Multiple sequence alignment - TraesCS2B01G168400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G168400 chr2B 100.000 4132 0 0 1 4132 141206467 141202336 0.000000e+00 7631.0
1 TraesCS2B01G168400 chr2B 83.796 1370 134 48 608 1922 730083372 730082036 0.000000e+00 1219.0
2 TraesCS2B01G168400 chr2B 86.217 653 58 16 2542 3175 730080314 730079675 0.000000e+00 678.0
3 TraesCS2B01G168400 chr2B 92.391 368 26 2 3765 4132 788360159 788359794 1.320000e-144 523.0
4 TraesCS2B01G168400 chr2B 92.391 368 26 2 3765 4132 788413537 788413172 1.320000e-144 523.0
5 TraesCS2B01G168400 chr2B 92.120 368 27 2 3765 4132 788383179 788382814 6.120000e-143 518.0
6 TraesCS2B01G168400 chr2B 91.848 368 28 2 3765 4132 788302831 788303196 2.850000e-141 512.0
7 TraesCS2B01G168400 chr2B 80.498 241 27 11 2189 2422 730081898 730081671 2.550000e-37 167.0
8 TraesCS2B01G168400 chr2A 92.288 1919 96 25 52 1943 88298204 88296311 0.000000e+00 2676.0
9 TraesCS2B01G168400 chr2A 87.611 1574 110 44 1942 3479 88296228 88294704 0.000000e+00 1748.0
10 TraesCS2B01G168400 chr2A 83.248 1367 142 50 608 1922 733797728 733796397 0.000000e+00 1175.0
11 TraesCS2B01G168400 chr2A 80.688 1046 119 38 2182 3175 733795671 733794657 0.000000e+00 736.0
12 TraesCS2B01G168400 chr2A 90.686 204 15 4 3565 3765 88294705 88294503 6.810000e-68 268.0
13 TraesCS2B01G168400 chr2A 86.517 89 4 2 3486 3567 710254629 710254542 1.580000e-14 91.6
14 TraesCS2B01G168400 chr2D 93.791 1514 60 12 203 1690 87840394 87838889 0.000000e+00 2244.0
15 TraesCS2B01G168400 chr2D 93.160 731 44 4 2751 3479 87835998 87835272 0.000000e+00 1068.0
16 TraesCS2B01G168400 chr2D 81.986 1138 116 46 608 1690 600164577 600163474 0.000000e+00 883.0
17 TraesCS2B01G168400 chr2D 91.693 638 39 11 2054 2687 87836701 87836074 0.000000e+00 872.0
18 TraesCS2B01G168400 chr2D 86.272 743 82 10 2702 3441 600162036 600161311 0.000000e+00 789.0
19 TraesCS2B01G168400 chr2D 85.938 768 61 17 939 1690 600134145 600133409 0.000000e+00 776.0
20 TraesCS2B01G168400 chr2D 81.064 771 84 36 2674 3440 600131880 600131168 3.610000e-155 558.0
21 TraesCS2B01G168400 chr2D 91.729 266 20 2 1690 1953 87837237 87836972 6.530000e-98 368.0
22 TraesCS2B01G168400 chr2D 93.678 174 10 1 1745 1918 600132759 600132587 4.100000e-65 259.0
23 TraesCS2B01G168400 chr2D 95.570 158 7 0 1761 1918 600162844 600162687 1.910000e-63 254.0
24 TraesCS2B01G168400 chr2D 85.845 219 15 6 2 204 87939787 87939569 6.950000e-53 219.0
25 TraesCS2B01G168400 chr2D 94.444 126 7 0 3640 3765 87832035 87831910 1.170000e-45 195.0
26 TraesCS2B01G168400 chr2D 86.316 95 7 1 3482 3570 81391194 81391100 9.450000e-17 99.0
27 TraesCS2B01G168400 chr1B 95.068 365 18 0 3768 4132 133533453 133533089 3.580000e-160 575.0
28 TraesCS2B01G168400 chr1B 87.059 85 4 3 3486 3563 388797895 388797811 5.690000e-14 89.8
29 TraesCS2B01G168400 chr1B 93.103 58 4 0 3506 3563 594834348 594834405 7.360000e-13 86.1
30 TraesCS2B01G168400 chr6B 93.767 369 23 0 3764 4132 63578619 63578251 4.670000e-154 555.0
31 TraesCS2B01G168400 chr6B 93.478 368 22 2 3765 4132 38019380 38019745 2.810000e-151 545.0
32 TraesCS2B01G168400 chr6B 84.783 92 6 2 3483 3566 551542625 551542716 7.360000e-13 86.1
33 TraesCS2B01G168400 chr6B 83.721 86 8 1 3485 3564 479166819 479166734 4.430000e-10 76.8
34 TraesCS2B01G168400 chr7B 93.207 368 21 3 3765 4132 65823883 65824246 4.700000e-149 538.0
35 TraesCS2B01G168400 chr7B 92.412 369 28 0 3764 4132 42074393 42074025 1.020000e-145 527.0
36 TraesCS2B01G168400 chr7B 90.164 61 6 0 1243 1303 489829250 489829190 3.420000e-11 80.5
37 TraesCS2B01G168400 chr7B 100.000 29 0 0 3481 3509 23560039 23560067 2.000000e-03 54.7
38 TraesCS2B01G168400 chr4A 91.667 84 7 0 3482 3565 724508316 724508399 2.610000e-22 117.0
39 TraesCS2B01G168400 chr4A 93.103 58 4 0 3506 3563 616792833 616792776 7.360000e-13 86.1
40 TraesCS2B01G168400 chr4B 94.828 58 3 0 3506 3563 404569895 404569952 1.580000e-14 91.6
41 TraesCS2B01G168400 chr7A 83.721 86 14 0 1218 1303 534444346 534444431 9.520000e-12 82.4
42 TraesCS2B01G168400 chr7A 90.000 60 6 0 1243 1302 79776761 79776820 1.230000e-10 78.7
43 TraesCS2B01G168400 chr4D 84.444 90 7 3 3481 3563 64543009 64543098 9.520000e-12 82.4
44 TraesCS2B01G168400 chr3B 100.000 30 0 0 3476 3505 520448047 520448018 5.770000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G168400 chr2B 141202336 141206467 4131 True 7631.0 7631 100.000000 1 4132 1 chr2B.!!$R1 4131
1 TraesCS2B01G168400 chr2B 730079675 730083372 3697 True 688.0 1219 83.503667 608 3175 3 chr2B.!!$R5 2567
2 TraesCS2B01G168400 chr2A 88294503 88298204 3701 True 1564.0 2676 90.195000 52 3765 3 chr2A.!!$R2 3713
3 TraesCS2B01G168400 chr2A 733794657 733797728 3071 True 955.5 1175 81.968000 608 3175 2 chr2A.!!$R3 2567
4 TraesCS2B01G168400 chr2D 87831910 87840394 8484 True 949.4 2244 92.963400 203 3765 5 chr2D.!!$R3 3562
5 TraesCS2B01G168400 chr2D 600161311 600164577 3266 True 642.0 883 87.942667 608 3441 3 chr2D.!!$R5 2833
6 TraesCS2B01G168400 chr2D 600131168 600134145 2977 True 531.0 776 86.893333 939 3440 3 chr2D.!!$R4 2501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.028505 GCGTAATGGTGATGCTGCTG 59.971 55.0 0.0 0.0 0.0 4.41 F
234 235 0.388649 GCATCTTCGTCGGTGAGTGT 60.389 55.0 0.0 0.0 0.0 3.55 F
450 462 0.458025 GGGTCGCTTCTACGGTTCTG 60.458 60.0 0.0 0.0 0.0 3.02 F
2059 5245 0.871057 CACACACACACACACACACA 59.129 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 4536 1.091771 CCTGAACTATGCAGCCACCG 61.092 60.0 0.00 0.00 32.06 4.94 R
2065 5251 0.177141 ACTAGGCGTTGTGTGTGTGT 59.823 50.0 0.00 0.00 0.00 3.72 R
2066 5252 0.581529 CACTAGGCGTTGTGTGTGTG 59.418 55.0 11.99 0.00 0.00 3.82 R
3828 11883 0.031585 TGTGTGCGTGTGGACTAGTC 59.968 55.0 14.87 14.87 37.34 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.653115 GGCAGGACCTTTTGCAGC 59.347 61.111 6.54 0.00 42.02 5.25
22 23 1.905354 GGCAGGACCTTTTGCAGCT 60.905 57.895 6.54 0.00 42.02 4.24
23 24 1.288127 GCAGGACCTTTTGCAGCTG 59.712 57.895 10.11 10.11 40.02 4.24
24 25 1.288127 CAGGACCTTTTGCAGCTGC 59.712 57.895 31.89 31.89 42.50 5.25
38 39 3.792716 GCTGCAAAAGCGTAATGGT 57.207 47.368 0.00 0.00 43.45 3.55
39 40 1.339711 GCTGCAAAAGCGTAATGGTG 58.660 50.000 0.00 0.00 43.45 4.17
40 41 1.068610 GCTGCAAAAGCGTAATGGTGA 60.069 47.619 0.00 0.00 43.45 4.02
41 42 2.415893 GCTGCAAAAGCGTAATGGTGAT 60.416 45.455 0.00 0.00 43.45 3.06
42 43 3.173599 CTGCAAAAGCGTAATGGTGATG 58.826 45.455 0.00 0.00 0.00 3.07
43 44 1.919918 GCAAAAGCGTAATGGTGATGC 59.080 47.619 0.00 0.00 34.64 3.91
44 45 2.415893 GCAAAAGCGTAATGGTGATGCT 60.416 45.455 0.00 0.00 40.95 3.79
45 46 3.173599 CAAAAGCGTAATGGTGATGCTG 58.826 45.455 0.00 0.00 39.14 4.41
46 47 0.734889 AAGCGTAATGGTGATGCTGC 59.265 50.000 0.00 0.00 39.14 5.25
47 48 0.107508 AGCGTAATGGTGATGCTGCT 60.108 50.000 0.00 0.00 37.77 4.24
48 49 0.028505 GCGTAATGGTGATGCTGCTG 59.971 55.000 0.00 0.00 0.00 4.41
49 50 0.028505 CGTAATGGTGATGCTGCTGC 59.971 55.000 8.89 8.89 40.20 5.25
93 94 4.414852 CAAAATTGATACAAGCTGGACGG 58.585 43.478 0.00 0.00 0.00 4.79
95 96 0.981183 TTGATACAAGCTGGACGGGT 59.019 50.000 0.00 0.00 0.00 5.28
116 117 0.733566 ACGCAGCAATGCCGAAATTG 60.734 50.000 10.59 0.00 39.98 2.32
122 123 0.573521 CAATGCCGAAATTGCGATGC 59.426 50.000 7.61 3.53 31.19 3.91
158 159 7.027161 GTCAATAAATATTGCAACAAGGACGT 58.973 34.615 0.00 0.00 42.06 4.34
201 202 1.745489 CCGGTTCAAGGCTGGTAGC 60.745 63.158 0.00 0.00 41.46 3.58
234 235 0.388649 GCATCTTCGTCGGTGAGTGT 60.389 55.000 0.00 0.00 0.00 3.55
350 351 8.652290 AGTAGTAGGAGAGAAAAATTGTTGAGT 58.348 33.333 0.00 0.00 0.00 3.41
443 455 4.120589 CCATTTTAGAGGGTCGCTTCTAC 58.879 47.826 0.00 0.00 0.00 2.59
450 462 0.458025 GGGTCGCTTCTACGGTTCTG 60.458 60.000 0.00 0.00 0.00 3.02
461 473 3.580319 GGTTCTGGTGGGCTGGGT 61.580 66.667 0.00 0.00 0.00 4.51
527 539 4.384208 GCCCACACTCATATAACAAGGTCT 60.384 45.833 0.00 0.00 0.00 3.85
650 672 3.677700 CGTCATCGTGAGTAATTTCCCCA 60.678 47.826 0.00 0.00 0.00 4.96
651 673 3.871594 GTCATCGTGAGTAATTTCCCCAG 59.128 47.826 0.00 0.00 0.00 4.45
772 810 1.536766 CACATGCATGTCGTCACCTTT 59.463 47.619 29.23 0.96 39.39 3.11
902 949 3.517901 TCCATCTATATAAACCCCCTGCG 59.482 47.826 0.00 0.00 0.00 5.18
1329 1403 1.658686 ATCTCACGTCCGACTGCCTC 61.659 60.000 0.00 0.00 0.00 4.70
1500 1595 1.124780 TGGTGGACGAGGAGAAACAA 58.875 50.000 0.00 0.00 0.00 2.83
1894 4536 1.153147 GTTCGAGGGAATGGGCCTC 60.153 63.158 4.53 0.00 34.05 4.70
1947 4867 5.278071 CCGTGCTCCTCTCAGTTATAGTTAG 60.278 48.000 0.00 0.00 0.00 2.34
2052 5238 3.001228 CACTATCACACACACACACACAC 59.999 47.826 0.00 0.00 0.00 3.82
2053 5239 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
2054 5240 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2056 5242 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2058 5244 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2059 5245 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2060 5246 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2061 5247 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2062 5248 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2064 5250 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2065 5251 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2066 5252 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2068 5254 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2069 5255 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2072 5258 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2107 5293 1.079127 ATCAGGTCGAAGTTGCGGG 60.079 57.895 0.00 0.00 0.00 6.13
2119 5305 4.201990 CGAAGTTGCGGGAGTACTACTAAT 60.202 45.833 4.77 0.00 0.00 1.73
2120 5306 5.008019 CGAAGTTGCGGGAGTACTACTAATA 59.992 44.000 4.77 0.00 0.00 0.98
2121 5307 6.458751 CGAAGTTGCGGGAGTACTACTAATAA 60.459 42.308 4.77 0.00 0.00 1.40
2122 5308 6.973460 AGTTGCGGGAGTACTACTAATAAT 57.027 37.500 4.77 0.00 0.00 1.28
2123 5309 6.979465 AGTTGCGGGAGTACTACTAATAATC 58.021 40.000 4.77 0.00 0.00 1.75
2124 5310 6.548622 AGTTGCGGGAGTACTACTAATAATCA 59.451 38.462 4.77 0.00 0.00 2.57
2125 5311 6.323203 TGCGGGAGTACTACTAATAATCAC 57.677 41.667 4.77 0.00 0.00 3.06
2145 5331 8.558973 AATCACTAATCAGACTTCTTCCAAAG 57.441 34.615 0.00 0.00 0.00 2.77
2152 5338 6.090483 TCAGACTTCTTCCAAAGTAGTGAG 57.910 41.667 4.04 0.00 38.95 3.51
2157 5343 6.522946 ACTTCTTCCAAAGTAGTGAGGTTAC 58.477 40.000 0.00 0.00 37.68 2.50
2168 5358 9.582648 AAAGTAGTGAGGTTACAATACCAAAAT 57.417 29.630 0.00 0.00 40.62 1.82
2182 5373 8.458843 ACAATACCAAAATAGAGCAATACACAC 58.541 33.333 0.00 0.00 0.00 3.82
2212 5720 2.341846 TCTGCCGGTAATCCCAAATC 57.658 50.000 1.90 0.00 0.00 2.17
2226 5734 7.444629 AATCCCAAATCATACATCTTGATCG 57.555 36.000 0.00 0.00 32.72 3.69
2262 5771 0.755698 ACCAGTGACTCGTGGAGTGT 60.756 55.000 2.51 0.00 43.53 3.55
2307 5829 4.623595 GTGCTACTCTACTTGACTTGCTTC 59.376 45.833 0.00 0.00 0.00 3.86
2349 5877 7.381766 TGAACAATATGAGTCTTTCCATGTG 57.618 36.000 0.00 0.00 0.00 3.21
2376 5914 7.390996 TGAACTTTTTAACGGATGGCTGTATAA 59.609 33.333 0.00 0.00 32.01 0.98
2397 5935 9.226345 GTATAAGCATAACTGAAACTTTGCATC 57.774 33.333 0.00 0.00 32.66 3.91
2577 7369 5.637006 TGAGAGAGAAGAAAGTAGAGCAC 57.363 43.478 0.00 0.00 0.00 4.40
2626 7419 5.051891 AGCAAATGAATCAGTAACTGCAC 57.948 39.130 8.27 0.00 0.00 4.57
2635 7443 3.253230 TCAGTAACTGCACATGTCATCG 58.747 45.455 0.00 0.00 0.00 3.84
2679 7487 8.469309 AAATGACCCACTTTATCATATCCAAG 57.531 34.615 0.00 0.00 32.74 3.61
2700 7508 3.054065 AGGGGAATCTCCTGCTAGTTTTG 60.054 47.826 0.00 0.00 36.57 2.44
2745 7588 9.874195 TCAACCAATAAATAATATCATCCCACA 57.126 29.630 0.00 0.00 0.00 4.17
2806 7688 4.982916 CGACGGAATTTAGTCCTGATTAGG 59.017 45.833 0.00 0.00 46.06 2.69
2815 7698 7.739498 TTTAGTCCTGATTAGGTTTTGACAC 57.261 36.000 3.04 0.00 44.88 3.67
3005 7888 1.043116 TCCTCGTCTACATGGCCCTG 61.043 60.000 6.46 6.46 0.00 4.45
3083 7966 2.349590 CAACTCGGCATCAATGTCTCA 58.650 47.619 0.00 0.00 0.00 3.27
3216 8103 3.186409 CGTATATTGGATTGCCGAGGTTG 59.814 47.826 0.00 0.00 36.79 3.77
3217 8104 3.576078 ATATTGGATTGCCGAGGTTGA 57.424 42.857 0.00 0.00 36.79 3.18
3218 8105 2.214376 ATTGGATTGCCGAGGTTGAA 57.786 45.000 0.00 0.00 36.79 2.69
3260 8147 5.514484 GCACATATTCTTCATCTCCCCAGAT 60.514 44.000 0.00 0.00 40.32 2.90
3412 8302 9.973450 TTTGACGATCCTTTCAAATAAAATTGA 57.027 25.926 7.41 0.00 36.92 2.57
3415 8305 9.787532 GACGATCCTTTCAAATAAAATTGATGA 57.212 29.630 0.00 0.00 38.98 2.92
3476 8366 2.408271 TCATCCACAAGCCTAGCAAG 57.592 50.000 0.00 0.00 0.00 4.01
3477 8367 1.630369 TCATCCACAAGCCTAGCAAGT 59.370 47.619 0.00 0.00 0.00 3.16
3478 8368 2.837591 TCATCCACAAGCCTAGCAAGTA 59.162 45.455 0.00 0.00 0.00 2.24
3479 8369 2.762535 TCCACAAGCCTAGCAAGTAC 57.237 50.000 0.00 0.00 0.00 2.73
3480 8370 1.067142 TCCACAAGCCTAGCAAGTACG 60.067 52.381 0.00 0.00 0.00 3.67
3481 8371 1.337823 CCACAAGCCTAGCAAGTACGT 60.338 52.381 0.00 0.00 0.00 3.57
3482 8372 2.094390 CCACAAGCCTAGCAAGTACGTA 60.094 50.000 0.00 0.00 0.00 3.57
3483 8373 3.581755 CACAAGCCTAGCAAGTACGTAA 58.418 45.455 0.00 0.00 0.00 3.18
3498 8388 1.020437 CGTAAGTACTCCCTCCGTCC 58.980 60.000 0.00 0.00 0.00 4.79
3499 8389 1.397672 GTAAGTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
3500 8390 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3501 8391 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3502 8392 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3503 8393 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3504 8394 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3505 8395 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3506 8396 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3507 8397 1.768870 CTCCCTCCGTCCCATAATGTT 59.231 52.381 0.00 0.00 0.00 2.71
3508 8398 2.172717 CTCCCTCCGTCCCATAATGTTT 59.827 50.000 0.00 0.00 0.00 2.83
3509 8399 2.578940 TCCCTCCGTCCCATAATGTTTT 59.421 45.455 0.00 0.00 0.00 2.43
3510 8400 3.010808 TCCCTCCGTCCCATAATGTTTTT 59.989 43.478 0.00 0.00 0.00 1.94
3555 8445 7.424227 AAAACGTCTTACATTATGAAACGGA 57.576 32.000 0.00 0.00 0.00 4.69
3556 8446 7.424227 AAACGTCTTACATTATGAAACGGAA 57.576 32.000 0.00 0.00 0.00 4.30
3557 8447 6.642683 ACGTCTTACATTATGAAACGGAAG 57.357 37.500 0.00 0.00 0.00 3.46
3558 8448 5.579511 ACGTCTTACATTATGAAACGGAAGG 59.420 40.000 0.00 0.00 0.00 3.46
3559 8449 5.808540 CGTCTTACATTATGAAACGGAAGGA 59.191 40.000 0.00 0.00 0.00 3.36
3560 8450 6.019801 CGTCTTACATTATGAAACGGAAGGAG 60.020 42.308 0.00 0.00 0.00 3.69
3561 8451 6.817140 GTCTTACATTATGAAACGGAAGGAGT 59.183 38.462 0.00 0.00 0.00 3.85
3562 8452 7.977853 GTCTTACATTATGAAACGGAAGGAGTA 59.022 37.037 0.00 0.00 0.00 2.59
3563 8453 7.977853 TCTTACATTATGAAACGGAAGGAGTAC 59.022 37.037 0.00 0.00 0.00 2.73
3570 8460 5.916318 TGAAACGGAAGGAGTACTAAACAA 58.084 37.500 0.00 0.00 0.00 2.83
3578 8469 4.359996 AGGAGTACTAAACAACTAGGGGG 58.640 47.826 0.00 0.00 0.00 5.40
3580 8471 5.016675 AGGAGTACTAAACAACTAGGGGGTA 59.983 44.000 0.00 0.00 0.00 3.69
3688 11743 2.849294 TTGATGTCACCGAATCCACA 57.151 45.000 0.00 0.00 0.00 4.17
3765 11820 3.637911 ATTAACGGCCACCAGACAATA 57.362 42.857 2.24 0.00 0.00 1.90
3766 11821 2.389962 TAACGGCCACCAGACAATAC 57.610 50.000 2.24 0.00 0.00 1.89
3767 11822 0.322187 AACGGCCACCAGACAATACC 60.322 55.000 2.24 0.00 0.00 2.73
3768 11823 1.813753 CGGCCACCAGACAATACCG 60.814 63.158 2.24 0.00 0.00 4.02
3769 11824 1.600107 GGCCACCAGACAATACCGA 59.400 57.895 0.00 0.00 0.00 4.69
3770 11825 0.035820 GGCCACCAGACAATACCGAA 60.036 55.000 0.00 0.00 0.00 4.30
3771 11826 1.612199 GGCCACCAGACAATACCGAAA 60.612 52.381 0.00 0.00 0.00 3.46
3772 11827 2.156098 GCCACCAGACAATACCGAAAA 58.844 47.619 0.00 0.00 0.00 2.29
3773 11828 2.554893 GCCACCAGACAATACCGAAAAA 59.445 45.455 0.00 0.00 0.00 1.94
3774 11829 3.365969 GCCACCAGACAATACCGAAAAAG 60.366 47.826 0.00 0.00 0.00 2.27
3775 11830 3.190535 CCACCAGACAATACCGAAAAAGG 59.809 47.826 0.00 0.00 37.30 3.11
3776 11831 2.817844 ACCAGACAATACCGAAAAAGGC 59.182 45.455 0.00 0.00 33.69 4.35
3777 11832 3.081804 CCAGACAATACCGAAAAAGGCT 58.918 45.455 0.00 0.00 33.69 4.58
3778 11833 3.506067 CCAGACAATACCGAAAAAGGCTT 59.494 43.478 0.00 0.00 33.69 4.35
3779 11834 4.022329 CCAGACAATACCGAAAAAGGCTTT 60.022 41.667 6.68 6.68 33.69 3.51
3780 11835 5.154222 CAGACAATACCGAAAAAGGCTTTC 58.846 41.667 13.76 0.41 33.69 2.62
3782 11837 2.913777 ATACCGAAAAAGGCTTTCGC 57.086 45.000 13.76 7.41 46.89 4.70
3792 11847 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
3793 11848 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
3794 11849 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
3795 11850 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
3796 11851 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
3797 11852 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
3798 11853 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
3799 11854 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
3811 11866 7.449934 CTTTATAAATAAAGCAAACCGCCAG 57.550 36.000 9.01 0.00 41.69 4.85
3812 11867 6.761099 TTATAAATAAAGCAAACCGCCAGA 57.239 33.333 0.00 0.00 44.04 3.86
3813 11868 3.575965 AAATAAAGCAAACCGCCAGAG 57.424 42.857 0.00 0.00 44.04 3.35
3814 11869 2.489938 ATAAAGCAAACCGCCAGAGA 57.510 45.000 0.00 0.00 44.04 3.10
3815 11870 1.808411 TAAAGCAAACCGCCAGAGAG 58.192 50.000 0.00 0.00 44.04 3.20
3816 11871 1.518903 AAAGCAAACCGCCAGAGAGC 61.519 55.000 0.00 0.00 44.04 4.09
3824 11879 4.740235 GCCAGAGAGCGGACATAC 57.260 61.111 0.00 0.00 0.00 2.39
3825 11880 1.816537 GCCAGAGAGCGGACATACA 59.183 57.895 0.00 0.00 0.00 2.29
3826 11881 0.528684 GCCAGAGAGCGGACATACAC 60.529 60.000 0.00 0.00 0.00 2.90
3827 11882 0.248661 CCAGAGAGCGGACATACACG 60.249 60.000 0.00 0.00 0.00 4.49
3828 11883 0.248661 CAGAGAGCGGACATACACGG 60.249 60.000 0.00 0.00 0.00 4.94
3829 11884 0.393944 AGAGAGCGGACATACACGGA 60.394 55.000 0.00 0.00 0.00 4.69
3830 11885 0.248539 GAGAGCGGACATACACGGAC 60.249 60.000 0.00 0.00 0.00 4.79
3831 11886 0.680280 AGAGCGGACATACACGGACT 60.680 55.000 0.00 0.00 0.00 3.85
3832 11887 1.019673 GAGCGGACATACACGGACTA 58.980 55.000 0.00 0.00 0.00 2.59
3833 11888 1.002684 GAGCGGACATACACGGACTAG 60.003 57.143 0.00 0.00 0.00 2.57
3834 11889 0.737219 GCGGACATACACGGACTAGT 59.263 55.000 0.00 0.00 0.00 2.57
3835 11890 1.268437 GCGGACATACACGGACTAGTC 60.268 57.143 14.87 14.87 0.00 2.59
3836 11891 1.332997 CGGACATACACGGACTAGTCC 59.667 57.143 29.18 29.18 46.18 3.85
3846 11901 2.810486 GACTAGTCCACACGCACAC 58.190 57.895 12.13 0.00 0.00 3.82
3847 11902 0.031585 GACTAGTCCACACGCACACA 59.968 55.000 12.13 0.00 0.00 3.72
3848 11903 0.249322 ACTAGTCCACACGCACACAC 60.249 55.000 0.00 0.00 0.00 3.82
3849 11904 0.944311 CTAGTCCACACGCACACACC 60.944 60.000 0.00 0.00 0.00 4.16
3850 11905 2.372040 TAGTCCACACGCACACACCC 62.372 60.000 0.00 0.00 0.00 4.61
3851 11906 3.787001 TCCACACGCACACACCCA 61.787 61.111 0.00 0.00 0.00 4.51
3852 11907 2.826287 CCACACGCACACACCCAA 60.826 61.111 0.00 0.00 0.00 4.12
3853 11908 2.715005 CACACGCACACACCCAAG 59.285 61.111 0.00 0.00 0.00 3.61
3854 11909 2.112198 CACACGCACACACCCAAGT 61.112 57.895 0.00 0.00 0.00 3.16
3855 11910 1.817941 ACACGCACACACCCAAGTC 60.818 57.895 0.00 0.00 0.00 3.01
3856 11911 1.523711 CACGCACACACCCAAGTCT 60.524 57.895 0.00 0.00 0.00 3.24
3857 11912 1.227556 ACGCACACACCCAAGTCTC 60.228 57.895 0.00 0.00 0.00 3.36
3858 11913 1.227527 CGCACACACCCAAGTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
3859 11914 1.498865 CGCACACACCCAAGTCTCAC 61.499 60.000 0.00 0.00 0.00 3.51
3860 11915 0.463654 GCACACACCCAAGTCTCACA 60.464 55.000 0.00 0.00 0.00 3.58
3861 11916 1.299541 CACACACCCAAGTCTCACAC 58.700 55.000 0.00 0.00 0.00 3.82
3862 11917 0.908910 ACACACCCAAGTCTCACACA 59.091 50.000 0.00 0.00 0.00 3.72
3863 11918 1.280710 ACACACCCAAGTCTCACACAA 59.719 47.619 0.00 0.00 0.00 3.33
3864 11919 2.290641 ACACACCCAAGTCTCACACAAA 60.291 45.455 0.00 0.00 0.00 2.83
3865 11920 2.752354 CACACCCAAGTCTCACACAAAA 59.248 45.455 0.00 0.00 0.00 2.44
3866 11921 3.016736 ACACCCAAGTCTCACACAAAAG 58.983 45.455 0.00 0.00 0.00 2.27
3867 11922 3.016736 CACCCAAGTCTCACACAAAAGT 58.983 45.455 0.00 0.00 0.00 2.66
3868 11923 4.196193 CACCCAAGTCTCACACAAAAGTA 58.804 43.478 0.00 0.00 0.00 2.24
3869 11924 4.035208 CACCCAAGTCTCACACAAAAGTAC 59.965 45.833 0.00 0.00 0.00 2.73
3870 11925 4.196193 CCCAAGTCTCACACAAAAGTACA 58.804 43.478 0.00 0.00 0.00 2.90
3871 11926 4.821805 CCCAAGTCTCACACAAAAGTACAT 59.178 41.667 0.00 0.00 0.00 2.29
3872 11927 5.995282 CCCAAGTCTCACACAAAAGTACATA 59.005 40.000 0.00 0.00 0.00 2.29
3873 11928 6.147821 CCCAAGTCTCACACAAAAGTACATAG 59.852 42.308 0.00 0.00 0.00 2.23
3874 11929 6.147821 CCAAGTCTCACACAAAAGTACATAGG 59.852 42.308 0.00 0.00 0.00 2.57
3875 11930 6.420913 AGTCTCACACAAAAGTACATAGGT 57.579 37.500 0.00 0.00 0.00 3.08
3876 11931 6.827727 AGTCTCACACAAAAGTACATAGGTT 58.172 36.000 0.00 0.00 0.00 3.50
3877 11932 7.280356 AGTCTCACACAAAAGTACATAGGTTT 58.720 34.615 0.00 0.00 0.00 3.27
3878 11933 7.773690 AGTCTCACACAAAAGTACATAGGTTTT 59.226 33.333 0.00 0.00 0.00 2.43
3879 11934 7.855904 GTCTCACACAAAAGTACATAGGTTTTG 59.144 37.037 12.99 12.99 43.66 2.44
3880 11935 6.500041 TCACACAAAAGTACATAGGTTTTGC 58.500 36.000 14.01 0.00 42.42 3.68
3881 11936 6.320164 TCACACAAAAGTACATAGGTTTTGCT 59.680 34.615 14.01 3.39 42.42 3.91
3882 11937 6.417635 CACACAAAAGTACATAGGTTTTGCTG 59.582 38.462 14.01 13.24 42.42 4.41
3883 11938 6.320164 ACACAAAAGTACATAGGTTTTGCTGA 59.680 34.615 14.01 0.00 42.42 4.26
3884 11939 6.857964 CACAAAAGTACATAGGTTTTGCTGAG 59.142 38.462 14.01 3.00 42.42 3.35
3885 11940 6.016276 ACAAAAGTACATAGGTTTTGCTGAGG 60.016 38.462 14.01 0.00 42.42 3.86
3886 11941 4.222124 AGTACATAGGTTTTGCTGAGGG 57.778 45.455 0.00 0.00 0.00 4.30
3887 11942 1.839424 ACATAGGTTTTGCTGAGGGC 58.161 50.000 0.00 0.00 42.22 5.19
3897 11952 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
3898 11953 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
3899 11954 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
3900 11955 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
3910 11965 2.307934 GCTCAACAAGCCCACAAAAA 57.692 45.000 0.00 0.00 45.92 1.94
3911 11966 2.204237 GCTCAACAAGCCCACAAAAAG 58.796 47.619 0.00 0.00 45.92 2.27
3912 11967 2.825205 CTCAACAAGCCCACAAAAAGG 58.175 47.619 0.00 0.00 0.00 3.11
3913 11968 2.430332 CTCAACAAGCCCACAAAAAGGA 59.570 45.455 0.00 0.00 0.00 3.36
3914 11969 2.834549 TCAACAAGCCCACAAAAAGGAA 59.165 40.909 0.00 0.00 0.00 3.36
3915 11970 3.261897 TCAACAAGCCCACAAAAAGGAAA 59.738 39.130 0.00 0.00 0.00 3.13
3916 11971 3.990959 ACAAGCCCACAAAAAGGAAAA 57.009 38.095 0.00 0.00 0.00 2.29
3917 11972 4.293662 ACAAGCCCACAAAAAGGAAAAA 57.706 36.364 0.00 0.00 0.00 1.94
3933 11988 1.934589 AAAAAGAAAACACGGCAGCC 58.065 45.000 0.00 0.00 0.00 4.85
3952 12007 4.542075 CCTAAAGGCGAGGAAGGC 57.458 61.111 0.00 0.00 35.99 4.35
3953 12008 1.521681 CCTAAAGGCGAGGAAGGCG 60.522 63.158 0.00 0.00 41.99 5.52
3960 12015 4.345337 CGAGGAAGGCGCCTAATC 57.655 61.111 33.07 24.66 38.73 1.75
3961 12016 1.441729 CGAGGAAGGCGCCTAATCA 59.558 57.895 33.07 0.00 38.73 2.57
3962 12017 0.598680 CGAGGAAGGCGCCTAATCAG 60.599 60.000 33.07 17.79 38.73 2.90
3963 12018 0.250081 GAGGAAGGCGCCTAATCAGG 60.250 60.000 33.07 0.00 45.77 3.86
3971 12026 4.766970 CCTAATCAGGCTCTGGCG 57.233 61.111 2.86 0.00 39.81 5.69
3972 12027 1.070445 CCTAATCAGGCTCTGGCGG 59.930 63.158 2.86 0.00 39.81 6.13
3973 12028 1.402896 CCTAATCAGGCTCTGGCGGA 61.403 60.000 0.00 0.00 39.81 5.54
3974 12029 0.033228 CTAATCAGGCTCTGGCGGAG 59.967 60.000 19.19 19.19 44.49 4.63
3975 12030 1.402896 TAATCAGGCTCTGGCGGAGG 61.403 60.000 24.11 8.49 42.08 4.30
4008 12063 4.129737 CGACAGGCGGACGGTCAT 62.130 66.667 14.44 0.00 43.39 3.06
4009 12064 2.202756 GACAGGCGGACGGTCATC 60.203 66.667 9.35 0.47 42.84 2.92
4010 12065 4.129737 ACAGGCGGACGGTCATCG 62.130 66.667 10.76 6.46 45.88 3.84
4011 12066 3.822192 CAGGCGGACGGTCATCGA 61.822 66.667 10.76 0.00 42.43 3.59
4012 12067 2.833582 AGGCGGACGGTCATCGAT 60.834 61.111 10.76 0.00 42.43 3.59
4013 12068 2.354773 GGCGGACGGTCATCGATC 60.355 66.667 10.76 0.00 42.43 3.69
4014 12069 2.726180 GCGGACGGTCATCGATCG 60.726 66.667 9.36 9.36 42.39 3.69
4015 12070 2.051256 CGGACGGTCATCGATCGG 60.051 66.667 16.41 0.00 40.84 4.18
4016 12071 2.540228 CGGACGGTCATCGATCGGA 61.540 63.158 16.41 2.18 40.84 4.55
4017 12072 1.283181 GGACGGTCATCGATCGGAG 59.717 63.158 16.41 8.32 40.84 4.63
4018 12073 1.283181 GACGGTCATCGATCGGAGG 59.717 63.158 16.41 5.27 40.84 4.30
4019 12074 1.445716 GACGGTCATCGATCGGAGGT 61.446 60.000 16.41 6.50 40.84 3.85
4020 12075 1.283181 CGGTCATCGATCGGAGGTC 59.717 63.158 16.41 3.06 42.43 3.85
4021 12076 1.283181 GGTCATCGATCGGAGGTCG 59.717 63.158 16.41 0.00 40.30 4.79
4022 12077 1.283181 GTCATCGATCGGAGGTCGG 59.717 63.158 16.41 0.00 39.45 4.79
4023 12078 2.049985 CATCGATCGGAGGTCGGC 60.050 66.667 16.41 0.00 39.45 5.54
4024 12079 3.661131 ATCGATCGGAGGTCGGCG 61.661 66.667 16.41 0.00 39.45 6.46
4025 12080 4.843719 TCGATCGGAGGTCGGCGA 62.844 66.667 16.41 4.99 41.10 5.54
4026 12081 3.661131 CGATCGGAGGTCGGCGAT 61.661 66.667 14.79 0.00 38.57 4.58
4027 12082 2.049985 GATCGGAGGTCGGCGATG 60.050 66.667 14.79 1.06 39.77 3.84
4028 12083 2.518587 ATCGGAGGTCGGCGATGA 60.519 61.111 14.79 7.03 39.77 2.92
4029 12084 2.071844 GATCGGAGGTCGGCGATGAA 62.072 60.000 14.79 0.00 39.77 2.57
4030 12085 2.076622 ATCGGAGGTCGGCGATGAAG 62.077 60.000 14.79 4.40 39.77 3.02
4031 12086 2.107141 GGAGGTCGGCGATGAAGG 59.893 66.667 14.79 0.00 0.00 3.46
4032 12087 2.586357 GAGGTCGGCGATGAAGGC 60.586 66.667 14.79 0.00 0.00 4.35
4038 12093 2.423446 GGCGATGAAGGCGGAGAT 59.577 61.111 0.00 0.00 0.00 2.75
4039 12094 1.958205 GGCGATGAAGGCGGAGATG 60.958 63.158 0.00 0.00 0.00 2.90
4040 12095 1.958205 GCGATGAAGGCGGAGATGG 60.958 63.158 0.00 0.00 0.00 3.51
4041 12096 1.958205 CGATGAAGGCGGAGATGGC 60.958 63.158 0.00 0.00 0.00 4.40
4042 12097 1.958205 GATGAAGGCGGAGATGGCG 60.958 63.158 0.00 0.00 39.82 5.69
4043 12098 2.650813 GATGAAGGCGGAGATGGCGT 62.651 60.000 0.00 0.00 39.82 5.68
4044 12099 2.586357 GAAGGCGGAGATGGCGTC 60.586 66.667 0.00 0.00 39.82 5.19
4045 12100 4.514577 AAGGCGGAGATGGCGTCG 62.515 66.667 0.13 0.00 39.82 5.12
4065 12120 4.176752 GTCCTGGGGGCGGCTAAG 62.177 72.222 9.56 4.00 0.00 2.18
4076 12131 2.744709 GGCTAAGCGGACGCCAAA 60.745 61.111 13.63 0.00 43.25 3.28
4077 12132 2.750888 GGCTAAGCGGACGCCAAAG 61.751 63.158 13.63 9.32 43.25 2.77
4078 12133 1.740296 GCTAAGCGGACGCCAAAGA 60.740 57.895 13.63 0.00 43.17 2.52
4079 12134 1.090052 GCTAAGCGGACGCCAAAGAT 61.090 55.000 13.63 0.00 43.17 2.40
4080 12135 0.652592 CTAAGCGGACGCCAAAGATG 59.347 55.000 13.63 0.00 43.17 2.90
4081 12136 1.366111 TAAGCGGACGCCAAAGATGC 61.366 55.000 13.63 0.00 43.17 3.91
4082 12137 3.430862 GCGGACGCCAAAGATGCA 61.431 61.111 5.20 0.00 34.56 3.96
4083 12138 2.976840 GCGGACGCCAAAGATGCAA 61.977 57.895 5.20 0.00 34.56 4.08
4084 12139 1.135315 CGGACGCCAAAGATGCAAG 59.865 57.895 0.00 0.00 0.00 4.01
4085 12140 1.298157 CGGACGCCAAAGATGCAAGA 61.298 55.000 0.00 0.00 0.00 3.02
4086 12141 0.881118 GGACGCCAAAGATGCAAGAA 59.119 50.000 0.00 0.00 0.00 2.52
4087 12142 1.269448 GGACGCCAAAGATGCAAGAAA 59.731 47.619 0.00 0.00 0.00 2.52
4088 12143 2.319472 GACGCCAAAGATGCAAGAAAC 58.681 47.619 0.00 0.00 0.00 2.78
4089 12144 1.000274 ACGCCAAAGATGCAAGAAACC 60.000 47.619 0.00 0.00 0.00 3.27
4090 12145 1.000385 CGCCAAAGATGCAAGAAACCA 60.000 47.619 0.00 0.00 0.00 3.67
4091 12146 2.680577 GCCAAAGATGCAAGAAACCAG 58.319 47.619 0.00 0.00 0.00 4.00
4092 12147 2.297033 GCCAAAGATGCAAGAAACCAGA 59.703 45.455 0.00 0.00 0.00 3.86
4093 12148 3.613432 GCCAAAGATGCAAGAAACCAGAG 60.613 47.826 0.00 0.00 0.00 3.35
4094 12149 3.822735 CCAAAGATGCAAGAAACCAGAGA 59.177 43.478 0.00 0.00 0.00 3.10
4095 12150 4.279169 CCAAAGATGCAAGAAACCAGAGAA 59.721 41.667 0.00 0.00 0.00 2.87
4096 12151 5.047519 CCAAAGATGCAAGAAACCAGAGAAT 60.048 40.000 0.00 0.00 0.00 2.40
4097 12152 6.453092 CAAAGATGCAAGAAACCAGAGAATT 58.547 36.000 0.00 0.00 0.00 2.17
4098 12153 6.661304 AAGATGCAAGAAACCAGAGAATTT 57.339 33.333 0.00 0.00 0.00 1.82
4099 12154 6.022163 AGATGCAAGAAACCAGAGAATTTG 57.978 37.500 0.00 0.00 0.00 2.32
4100 12155 5.771666 AGATGCAAGAAACCAGAGAATTTGA 59.228 36.000 0.00 0.00 0.00 2.69
4101 12156 5.850557 TGCAAGAAACCAGAGAATTTGAA 57.149 34.783 0.00 0.00 0.00 2.69
4102 12157 5.835257 TGCAAGAAACCAGAGAATTTGAAG 58.165 37.500 0.00 0.00 0.00 3.02
4103 12158 5.593909 TGCAAGAAACCAGAGAATTTGAAGA 59.406 36.000 0.00 0.00 0.00 2.87
4104 12159 6.266103 TGCAAGAAACCAGAGAATTTGAAGAT 59.734 34.615 0.00 0.00 0.00 2.40
4105 12160 7.150640 GCAAGAAACCAGAGAATTTGAAGATT 58.849 34.615 0.00 0.00 0.00 2.40
4106 12161 7.115947 GCAAGAAACCAGAGAATTTGAAGATTG 59.884 37.037 0.00 0.00 0.00 2.67
4107 12162 6.685657 AGAAACCAGAGAATTTGAAGATTGC 58.314 36.000 0.00 0.00 0.00 3.56
4108 12163 4.691860 ACCAGAGAATTTGAAGATTGCG 57.308 40.909 0.00 0.00 0.00 4.85
4109 12164 4.074970 ACCAGAGAATTTGAAGATTGCGT 58.925 39.130 0.00 0.00 0.00 5.24
4110 12165 4.154918 ACCAGAGAATTTGAAGATTGCGTC 59.845 41.667 0.00 0.00 0.00 5.19
4111 12166 4.154737 CCAGAGAATTTGAAGATTGCGTCA 59.845 41.667 0.00 0.00 0.00 4.35
4112 12167 5.322310 CAGAGAATTTGAAGATTGCGTCAG 58.678 41.667 0.00 0.00 34.09 3.51
4113 12168 4.999950 AGAGAATTTGAAGATTGCGTCAGT 59.000 37.500 0.00 0.00 34.09 3.41
4114 12169 6.091305 CAGAGAATTTGAAGATTGCGTCAGTA 59.909 38.462 0.00 0.00 34.09 2.74
4115 12170 6.312426 AGAGAATTTGAAGATTGCGTCAGTAG 59.688 38.462 0.00 0.00 34.09 2.57
4116 12171 4.606457 ATTTGAAGATTGCGTCAGTAGC 57.394 40.909 0.00 0.00 34.09 3.58
4117 12172 3.319137 TTGAAGATTGCGTCAGTAGCT 57.681 42.857 0.00 0.00 34.09 3.32
4118 12173 2.881074 TGAAGATTGCGTCAGTAGCTC 58.119 47.619 0.00 0.00 35.28 4.09
4119 12174 1.849219 GAAGATTGCGTCAGTAGCTCG 59.151 52.381 0.00 0.00 35.28 5.03
4120 12175 0.811915 AGATTGCGTCAGTAGCTCGT 59.188 50.000 0.00 0.00 35.28 4.18
4121 12176 1.192793 GATTGCGTCAGTAGCTCGTC 58.807 55.000 0.00 0.00 35.28 4.20
4122 12177 0.523546 ATTGCGTCAGTAGCTCGTCG 60.524 55.000 0.00 0.00 35.28 5.12
4123 12178 1.571215 TTGCGTCAGTAGCTCGTCGA 61.571 55.000 0.00 0.00 35.28 4.20
4124 12179 1.134075 GCGTCAGTAGCTCGTCGAA 59.866 57.895 0.00 0.00 0.00 3.71
4125 12180 0.858135 GCGTCAGTAGCTCGTCGAAG 60.858 60.000 0.00 0.00 0.00 3.79
4126 12181 0.720027 CGTCAGTAGCTCGTCGAAGA 59.280 55.000 0.03 0.03 0.00 2.87
4127 12182 1.267136 CGTCAGTAGCTCGTCGAAGAG 60.267 57.143 22.11 22.11 36.95 2.85
4128 12183 1.062880 GTCAGTAGCTCGTCGAAGAGG 59.937 57.143 26.24 11.80 44.69 3.69
4129 12184 0.378962 CAGTAGCTCGTCGAAGAGGG 59.621 60.000 26.24 6.85 43.36 4.30
4131 12186 1.031029 GTAGCTCGTCGAAGAGGGGT 61.031 60.000 26.24 12.80 45.87 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.905354 AGCTGCAAAAGGTCCTGCC 60.905 57.895 1.02 0.00 37.79 4.85
5 6 1.288127 CAGCTGCAAAAGGTCCTGC 59.712 57.895 0.00 0.00 39.09 4.85
6 7 1.288127 GCAGCTGCAAAAGGTCCTG 59.712 57.895 33.36 0.00 41.59 3.86
7 8 3.769201 GCAGCTGCAAAAGGTCCT 58.231 55.556 33.36 0.00 41.59 3.85
23 24 1.919918 GCATCACCATTACGCTTTTGC 59.080 47.619 0.00 0.00 43.23 3.68
24 25 3.173599 CAGCATCACCATTACGCTTTTG 58.826 45.455 0.00 0.00 0.00 2.44
25 26 2.415893 GCAGCATCACCATTACGCTTTT 60.416 45.455 0.00 0.00 0.00 2.27
26 27 1.133025 GCAGCATCACCATTACGCTTT 59.867 47.619 0.00 0.00 0.00 3.51
27 28 0.734889 GCAGCATCACCATTACGCTT 59.265 50.000 0.00 0.00 0.00 4.68
28 29 0.107508 AGCAGCATCACCATTACGCT 60.108 50.000 0.00 0.00 0.00 5.07
29 30 0.028505 CAGCAGCATCACCATTACGC 59.971 55.000 0.00 0.00 0.00 4.42
30 31 0.028505 GCAGCAGCATCACCATTACG 59.971 55.000 0.00 0.00 41.58 3.18
31 32 3.932459 GCAGCAGCATCACCATTAC 57.068 52.632 0.00 0.00 41.58 1.89
42 43 1.370900 CGTCCAAACTTGCAGCAGC 60.371 57.895 0.00 0.00 42.57 5.25
43 44 1.370900 GCGTCCAAACTTGCAGCAG 60.371 57.895 0.00 0.00 0.00 4.24
44 45 2.117779 TGCGTCCAAACTTGCAGCA 61.118 52.632 0.00 0.00 32.73 4.41
45 46 1.658409 GTGCGTCCAAACTTGCAGC 60.658 57.895 0.00 0.00 38.14 5.25
46 47 1.369209 CGTGCGTCCAAACTTGCAG 60.369 57.895 0.00 0.00 38.14 4.41
47 48 1.815840 TCGTGCGTCCAAACTTGCA 60.816 52.632 0.00 0.00 34.44 4.08
48 49 1.368850 GTCGTGCGTCCAAACTTGC 60.369 57.895 0.00 0.00 0.00 4.01
49 50 1.083657 CGTCGTGCGTCCAAACTTG 60.084 57.895 0.00 0.00 35.54 3.16
50 51 3.315796 CGTCGTGCGTCCAAACTT 58.684 55.556 0.00 0.00 35.54 2.66
68 69 5.229423 GTCCAGCTTGTATCAATTTTGCAA 58.771 37.500 0.00 0.00 0.00 4.08
70 71 3.853671 CGTCCAGCTTGTATCAATTTTGC 59.146 43.478 0.00 0.00 0.00 3.68
122 123 6.073980 GCAATATTTATTGACATGCCTTGCAG 60.074 38.462 13.22 0.00 44.40 4.41
134 135 7.026562 CACGTCCTTGTTGCAATATTTATTGA 58.973 34.615 13.22 0.00 44.40 2.57
158 159 2.632377 GACTAGCCTTGTAGCATTGCA 58.368 47.619 11.91 0.00 34.23 4.08
184 185 0.605319 TTGCTACCAGCCTTGAACCG 60.605 55.000 0.00 0.00 41.51 4.44
228 229 6.954487 TCTCTCTGTTGTAAGTTACACTCA 57.046 37.500 15.31 15.15 38.63 3.41
359 360 6.713762 TCAACACCATCTCAACAATTTTCT 57.286 33.333 0.00 0.00 0.00 2.52
360 361 7.769272 TTTCAACACCATCTCAACAATTTTC 57.231 32.000 0.00 0.00 0.00 2.29
413 425 3.889538 GACCCTCTAAAATGGCCCATTAC 59.110 47.826 9.91 0.00 32.43 1.89
443 455 4.722700 CCCAGCCCACCAGAACCG 62.723 72.222 0.00 0.00 0.00 4.44
450 462 0.831711 ATGAAACAACCCAGCCCACC 60.832 55.000 0.00 0.00 0.00 4.61
461 473 6.073765 GCTTTCTAGTCGTTCTGATGAAACAA 60.074 38.462 0.00 0.00 33.52 2.83
594 616 5.180271 GTCCAATGAGGTAATTTCGGTACA 58.820 41.667 0.00 0.00 39.02 2.90
650 672 9.762381 TTCCTGATTTATTGGGTGTTTATTACT 57.238 29.630 0.00 0.00 0.00 2.24
772 810 0.464036 AAACGGCTGTCTCTGTCACA 59.536 50.000 0.00 0.00 0.00 3.58
902 949 1.139095 CTTCGGAGCTACGGTGGTC 59.861 63.158 20.39 0.00 0.00 4.02
1894 4536 1.091771 CCTGAACTATGCAGCCACCG 61.092 60.000 0.00 0.00 32.06 4.94
1927 4569 5.508320 GGCACTAACTATAACTGAGAGGAGC 60.508 48.000 0.00 0.00 0.00 4.70
1932 4574 4.439700 GCACGGCACTAACTATAACTGAGA 60.440 45.833 0.00 0.00 0.00 3.27
2008 4929 4.085884 GTGTTTACATTGTAATCGGCGTG 58.914 43.478 6.85 0.00 0.00 5.34
2052 5238 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2053 5239 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2054 5240 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2056 5242 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2058 5244 1.724336 CGTTGTGTGTGTGTGTGTGTG 60.724 52.381 0.00 0.00 0.00 3.82
2059 5245 0.515127 CGTTGTGTGTGTGTGTGTGT 59.485 50.000 0.00 0.00 0.00 3.72
2060 5246 0.792729 GCGTTGTGTGTGTGTGTGTG 60.793 55.000 0.00 0.00 0.00 3.82
2061 5247 1.499949 GCGTTGTGTGTGTGTGTGT 59.500 52.632 0.00 0.00 0.00 3.72
2062 5248 1.226267 GGCGTTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2064 5250 0.581529 CTAGGCGTTGTGTGTGTGTG 59.418 55.000 0.00 0.00 0.00 3.82
2065 5251 0.177141 ACTAGGCGTTGTGTGTGTGT 59.823 50.000 0.00 0.00 0.00 3.72
2066 5252 0.581529 CACTAGGCGTTGTGTGTGTG 59.418 55.000 11.99 0.00 0.00 3.82
2068 5254 1.526887 CTTCACTAGGCGTTGTGTGTG 59.473 52.381 18.04 8.03 35.82 3.82
2069 5255 1.411246 TCTTCACTAGGCGTTGTGTGT 59.589 47.619 18.04 0.00 35.82 3.72
2072 5258 2.926200 CTGATCTTCACTAGGCGTTGTG 59.074 50.000 13.68 13.68 35.68 3.33
2119 5305 9.658799 CTTTGGAAGAAGTCTGATTAGTGATTA 57.341 33.333 0.00 0.00 0.00 1.75
2120 5306 8.160106 ACTTTGGAAGAAGTCTGATTAGTGATT 58.840 33.333 0.00 0.00 34.94 2.57
2121 5307 7.684529 ACTTTGGAAGAAGTCTGATTAGTGAT 58.315 34.615 0.00 0.00 34.94 3.06
2122 5308 7.067496 ACTTTGGAAGAAGTCTGATTAGTGA 57.933 36.000 0.00 0.00 34.94 3.41
2123 5309 8.091449 ACTACTTTGGAAGAAGTCTGATTAGTG 58.909 37.037 0.00 0.00 40.24 2.74
2124 5310 8.091449 CACTACTTTGGAAGAAGTCTGATTAGT 58.909 37.037 0.00 0.00 40.24 2.24
2125 5311 8.307483 TCACTACTTTGGAAGAAGTCTGATTAG 58.693 37.037 0.00 0.00 40.24 1.73
2134 5320 6.522054 TGTAACCTCACTACTTTGGAAGAAG 58.478 40.000 0.00 0.00 0.00 2.85
2145 5331 9.880157 TCTATTTTGGTATTGTAACCTCACTAC 57.120 33.333 0.00 0.00 40.44 2.73
2152 5338 9.946165 GTATTGCTCTATTTTGGTATTGTAACC 57.054 33.333 0.00 0.00 40.19 2.85
2157 5343 8.458052 TGTGTGTATTGCTCTATTTTGGTATTG 58.542 33.333 0.00 0.00 0.00 1.90
2168 5358 9.098355 GATATTTTGTCTGTGTGTATTGCTCTA 57.902 33.333 0.00 0.00 0.00 2.43
2180 5371 3.009723 ACCGGCAGATATTTTGTCTGTG 58.990 45.455 0.00 0.00 43.86 3.66
2182 5373 5.049405 GGATTACCGGCAGATATTTTGTCTG 60.049 44.000 0.00 0.00 44.60 3.51
2212 5720 5.065090 TGCTTGGTTTCGATCAAGATGTATG 59.935 40.000 20.53 2.14 41.94 2.39
2226 5734 5.048083 TCACTGGTCAAATATGCTTGGTTTC 60.048 40.000 0.00 0.00 0.00 2.78
2262 5771 3.368635 CCTTTGCTTCTTTGCATGGCATA 60.369 43.478 0.00 0.00 42.96 3.14
2334 5862 4.422073 AGTTCACACATGGAAAGACTCA 57.578 40.909 0.00 0.00 0.00 3.41
2349 5877 4.226761 CAGCCATCCGTTAAAAAGTTCAC 58.773 43.478 0.00 0.00 0.00 3.18
2376 5914 5.972107 AGATGCAAAGTTTCAGTTATGCT 57.028 34.783 0.00 0.00 34.97 3.79
2397 5935 5.102953 TCCACTTTTGATGGAGACCATAG 57.897 43.478 3.13 0.73 45.26 2.23
2577 7369 4.335647 AGGCCACCCGAAGTGCTG 62.336 66.667 5.01 0.00 45.83 4.41
2626 7419 3.084070 TCTCGAACATCCGATGACATG 57.916 47.619 15.47 0.00 37.96 3.21
2655 7463 7.006509 CCTTGGATATGATAAAGTGGGTCATT 58.993 38.462 0.00 0.00 34.62 2.57
2656 7464 6.467775 CCCTTGGATATGATAAAGTGGGTCAT 60.468 42.308 0.00 0.00 36.60 3.06
2672 7480 2.057922 GCAGGAGATTCCCCTTGGATA 58.942 52.381 0.00 0.00 41.40 2.59
2679 7487 3.054361 TCAAAACTAGCAGGAGATTCCCC 60.054 47.826 0.00 0.00 37.19 4.81
2738 7581 5.221581 GGTACTAATAATCGTGGTGTGGGAT 60.222 44.000 0.00 0.00 0.00 3.85
2741 7584 5.013568 TGGTACTAATAATCGTGGTGTGG 57.986 43.478 0.00 0.00 0.00 4.17
2744 7587 6.073765 GCAGAATGGTACTAATAATCGTGGTG 60.074 42.308 0.00 0.00 35.86 4.17
2745 7588 5.989777 GCAGAATGGTACTAATAATCGTGGT 59.010 40.000 0.00 0.00 35.86 4.16
2815 7698 1.610038 TGAACTTTGCCTGCACATCAG 59.390 47.619 0.00 0.00 42.49 2.90
2906 7789 2.864343 GTTGTACACTCGTGATATGCCC 59.136 50.000 3.74 0.00 0.00 5.36
2978 7861 2.203451 TAGACGAGGATCCCCGCC 60.203 66.667 16.50 4.35 37.58 6.13
3029 7912 1.281867 CTCTGCACCTTGGGGTTCATA 59.718 52.381 0.00 0.00 44.73 2.15
3083 7966 2.360350 CCTGCACCGACCAGCATT 60.360 61.111 0.00 0.00 40.42 3.56
3206 8093 0.105224 TCGTTTCTTCAACCTCGGCA 59.895 50.000 0.00 0.00 30.65 5.69
3208 8095 2.413837 ACATCGTTTCTTCAACCTCGG 58.586 47.619 0.00 0.00 30.65 4.63
3216 8103 5.106712 TGTGCCAAGATTACATCGTTTCTTC 60.107 40.000 0.00 0.00 0.00 2.87
3217 8104 4.759693 TGTGCCAAGATTACATCGTTTCTT 59.240 37.500 0.00 0.00 0.00 2.52
3218 8105 4.323417 TGTGCCAAGATTACATCGTTTCT 58.677 39.130 0.00 0.00 0.00 2.52
3298 8187 2.422377 GGTCCAAAACCTACACCACTGT 60.422 50.000 0.00 0.00 45.45 3.55
3448 8338 3.382546 AGGCTTGTGGATGATGTAATTGC 59.617 43.478 0.00 0.00 0.00 3.56
3476 8366 2.609916 GACGGAGGGAGTACTTACGTAC 59.390 54.545 3.33 1.35 45.04 3.67
3477 8367 2.420129 GGACGGAGGGAGTACTTACGTA 60.420 54.545 3.33 0.00 35.52 3.57
3478 8368 1.680249 GGACGGAGGGAGTACTTACGT 60.680 57.143 2.96 2.96 37.17 3.57
3479 8369 1.020437 GGACGGAGGGAGTACTTACG 58.980 60.000 0.00 0.00 0.00 3.18
3480 8370 1.341383 TGGGACGGAGGGAGTACTTAC 60.341 57.143 0.00 0.00 0.00 2.34
3481 8371 1.002069 TGGGACGGAGGGAGTACTTA 58.998 55.000 0.00 0.00 0.00 2.24
3482 8372 0.338814 ATGGGACGGAGGGAGTACTT 59.661 55.000 0.00 0.00 0.00 2.24
3483 8373 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
3484 8374 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
3485 8375 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3486 8376 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3487 8377 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3488 8378 1.887797 AACATTATGGGACGGAGGGA 58.112 50.000 0.00 0.00 0.00 4.20
3489 8379 2.729028 AAACATTATGGGACGGAGGG 57.271 50.000 0.00 0.00 0.00 4.30
3530 8420 7.863666 TCCGTTTCATAATGTAAGACGTTTTT 58.136 30.769 0.00 0.00 0.00 1.94
3531 8421 7.424227 TCCGTTTCATAATGTAAGACGTTTT 57.576 32.000 0.00 0.00 0.00 2.43
3532 8422 7.360607 CCTTCCGTTTCATAATGTAAGACGTTT 60.361 37.037 0.00 0.00 0.00 3.60
3533 8423 6.091713 CCTTCCGTTTCATAATGTAAGACGTT 59.908 38.462 0.00 0.00 0.00 3.99
3534 8424 5.579511 CCTTCCGTTTCATAATGTAAGACGT 59.420 40.000 0.00 0.00 0.00 4.34
3535 8425 5.808540 TCCTTCCGTTTCATAATGTAAGACG 59.191 40.000 0.00 0.00 0.00 4.18
3536 8426 6.817140 ACTCCTTCCGTTTCATAATGTAAGAC 59.183 38.462 0.00 0.00 0.00 3.01
3537 8427 6.942976 ACTCCTTCCGTTTCATAATGTAAGA 58.057 36.000 0.00 0.00 0.00 2.10
3538 8428 7.980099 AGTACTCCTTCCGTTTCATAATGTAAG 59.020 37.037 0.00 0.00 0.00 2.34
3539 8429 7.844009 AGTACTCCTTCCGTTTCATAATGTAA 58.156 34.615 0.00 0.00 0.00 2.41
3540 8430 7.414222 AGTACTCCTTCCGTTTCATAATGTA 57.586 36.000 0.00 0.00 0.00 2.29
3541 8431 6.295719 AGTACTCCTTCCGTTTCATAATGT 57.704 37.500 0.00 0.00 0.00 2.71
3542 8432 8.601476 GTTTAGTACTCCTTCCGTTTCATAATG 58.399 37.037 0.00 0.00 0.00 1.90
3543 8433 8.316214 TGTTTAGTACTCCTTCCGTTTCATAAT 58.684 33.333 0.00 0.00 0.00 1.28
3544 8434 7.669427 TGTTTAGTACTCCTTCCGTTTCATAA 58.331 34.615 0.00 0.00 0.00 1.90
3545 8435 7.230849 TGTTTAGTACTCCTTCCGTTTCATA 57.769 36.000 0.00 0.00 0.00 2.15
3546 8436 6.105397 TGTTTAGTACTCCTTCCGTTTCAT 57.895 37.500 0.00 0.00 0.00 2.57
3547 8437 5.534207 TGTTTAGTACTCCTTCCGTTTCA 57.466 39.130 0.00 0.00 0.00 2.69
3548 8438 5.987953 AGTTGTTTAGTACTCCTTCCGTTTC 59.012 40.000 0.00 0.00 0.00 2.78
3549 8439 5.922053 AGTTGTTTAGTACTCCTTCCGTTT 58.078 37.500 0.00 0.00 0.00 3.60
3550 8440 5.541953 AGTTGTTTAGTACTCCTTCCGTT 57.458 39.130 0.00 0.00 0.00 4.44
3551 8441 5.184671 CCTAGTTGTTTAGTACTCCTTCCGT 59.815 44.000 0.00 0.00 0.00 4.69
3552 8442 5.393896 CCCTAGTTGTTTAGTACTCCTTCCG 60.394 48.000 0.00 0.00 0.00 4.30
3553 8443 5.105023 CCCCTAGTTGTTTAGTACTCCTTCC 60.105 48.000 0.00 0.00 0.00 3.46
3554 8444 5.105023 CCCCCTAGTTGTTTAGTACTCCTTC 60.105 48.000 0.00 0.00 0.00 3.46
3555 8445 4.781621 CCCCCTAGTTGTTTAGTACTCCTT 59.218 45.833 0.00 0.00 0.00 3.36
3556 8446 4.202869 ACCCCCTAGTTGTTTAGTACTCCT 60.203 45.833 0.00 0.00 0.00 3.69
3557 8447 4.099633 ACCCCCTAGTTGTTTAGTACTCC 58.900 47.826 0.00 0.00 0.00 3.85
3558 8448 6.857437 TTACCCCCTAGTTGTTTAGTACTC 57.143 41.667 0.00 0.00 0.00 2.59
3559 8449 6.097412 CGATTACCCCCTAGTTGTTTAGTACT 59.903 42.308 0.00 0.00 0.00 2.73
3560 8450 6.127338 ACGATTACCCCCTAGTTGTTTAGTAC 60.127 42.308 0.00 0.00 0.00 2.73
3561 8451 5.957774 ACGATTACCCCCTAGTTGTTTAGTA 59.042 40.000 0.00 0.00 0.00 1.82
3562 8452 4.779489 ACGATTACCCCCTAGTTGTTTAGT 59.221 41.667 0.00 0.00 0.00 2.24
3563 8453 5.349061 ACGATTACCCCCTAGTTGTTTAG 57.651 43.478 0.00 0.00 0.00 1.85
3570 8460 0.638292 TGGGACGATTACCCCCTAGT 59.362 55.000 0.00 0.00 46.21 2.57
3578 8469 9.268268 TCATATTTCTGTATTTGGGACGATTAC 57.732 33.333 0.00 0.00 0.00 1.89
3580 8471 8.924511 ATCATATTTCTGTATTTGGGACGATT 57.075 30.769 0.00 0.00 0.00 3.34
3742 11797 2.588620 TGTCTGGTGGCCGTTAATTTT 58.411 42.857 0.00 0.00 0.00 1.82
3752 11807 1.816074 TTTCGGTATTGTCTGGTGGC 58.184 50.000 0.00 0.00 0.00 5.01
3755 11810 2.817844 GCCTTTTTCGGTATTGTCTGGT 59.182 45.455 0.00 0.00 0.00 4.00
3776 11831 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
3777 11832 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
3778 11833 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
3788 11843 7.121463 TCTCTGGCGGTTTGCTTTATTTATAAA 59.879 33.333 0.00 0.00 45.43 1.40
3789 11844 6.600032 TCTCTGGCGGTTTGCTTTATTTATAA 59.400 34.615 0.00 0.00 45.43 0.98
3790 11845 6.116806 TCTCTGGCGGTTTGCTTTATTTATA 58.883 36.000 0.00 0.00 45.43 0.98
3791 11846 4.947388 TCTCTGGCGGTTTGCTTTATTTAT 59.053 37.500 0.00 0.00 45.43 1.40
3792 11847 4.328536 TCTCTGGCGGTTTGCTTTATTTA 58.671 39.130 0.00 0.00 45.43 1.40
3793 11848 3.153919 TCTCTGGCGGTTTGCTTTATTT 58.846 40.909 0.00 0.00 45.43 1.40
3794 11849 2.749621 CTCTCTGGCGGTTTGCTTTATT 59.250 45.455 0.00 0.00 45.43 1.40
3795 11850 2.359900 CTCTCTGGCGGTTTGCTTTAT 58.640 47.619 0.00 0.00 45.43 1.40
3796 11851 1.808411 CTCTCTGGCGGTTTGCTTTA 58.192 50.000 0.00 0.00 45.43 1.85
3797 11852 1.518903 GCTCTCTGGCGGTTTGCTTT 61.519 55.000 0.00 0.00 45.43 3.51
3798 11853 1.968540 GCTCTCTGGCGGTTTGCTT 60.969 57.895 0.00 0.00 45.43 3.91
3799 11854 2.359230 GCTCTCTGGCGGTTTGCT 60.359 61.111 0.00 0.00 45.43 3.91
3807 11862 0.528684 GTGTATGTCCGCTCTCTGGC 60.529 60.000 0.00 0.00 0.00 4.85
3808 11863 0.248661 CGTGTATGTCCGCTCTCTGG 60.249 60.000 0.00 0.00 0.00 3.86
3809 11864 0.248661 CCGTGTATGTCCGCTCTCTG 60.249 60.000 0.00 0.00 0.00 3.35
3810 11865 0.393944 TCCGTGTATGTCCGCTCTCT 60.394 55.000 0.00 0.00 0.00 3.10
3811 11866 0.248539 GTCCGTGTATGTCCGCTCTC 60.249 60.000 0.00 0.00 0.00 3.20
3812 11867 0.680280 AGTCCGTGTATGTCCGCTCT 60.680 55.000 0.00 0.00 0.00 4.09
3813 11868 1.002684 CTAGTCCGTGTATGTCCGCTC 60.003 57.143 0.00 0.00 0.00 5.03
3814 11869 1.022735 CTAGTCCGTGTATGTCCGCT 58.977 55.000 0.00 0.00 0.00 5.52
3815 11870 0.737219 ACTAGTCCGTGTATGTCCGC 59.263 55.000 0.00 0.00 0.00 5.54
3816 11871 1.332997 GGACTAGTCCGTGTATGTCCG 59.667 57.143 25.83 0.00 40.36 4.79
3828 11883 0.031585 TGTGTGCGTGTGGACTAGTC 59.968 55.000 14.87 14.87 37.34 2.59
3829 11884 0.249322 GTGTGTGCGTGTGGACTAGT 60.249 55.000 0.00 0.00 37.34 2.57
3830 11885 0.944311 GGTGTGTGCGTGTGGACTAG 60.944 60.000 0.00 0.00 37.34 2.57
3831 11886 1.068417 GGTGTGTGCGTGTGGACTA 59.932 57.895 0.00 0.00 37.34 2.59
3832 11887 2.203015 GGTGTGTGCGTGTGGACT 60.203 61.111 0.00 0.00 37.34 3.85
3833 11888 3.276846 GGGTGTGTGCGTGTGGAC 61.277 66.667 0.00 0.00 36.89 4.02
3834 11889 3.330992 TTGGGTGTGTGCGTGTGGA 62.331 57.895 0.00 0.00 0.00 4.02
3835 11890 2.826287 TTGGGTGTGTGCGTGTGG 60.826 61.111 0.00 0.00 0.00 4.17
3836 11891 2.047151 GACTTGGGTGTGTGCGTGTG 62.047 60.000 0.00 0.00 0.00 3.82
3837 11892 1.817941 GACTTGGGTGTGTGCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
3838 11893 1.498865 GAGACTTGGGTGTGTGCGTG 61.499 60.000 0.00 0.00 0.00 5.34
3839 11894 1.227556 GAGACTTGGGTGTGTGCGT 60.228 57.895 0.00 0.00 0.00 5.24
3840 11895 1.227527 TGAGACTTGGGTGTGTGCG 60.228 57.895 0.00 0.00 0.00 5.34
3841 11896 0.463654 TGTGAGACTTGGGTGTGTGC 60.464 55.000 0.00 0.00 0.00 4.57
3842 11897 1.299541 GTGTGAGACTTGGGTGTGTG 58.700 55.000 0.00 0.00 0.00 3.82
3843 11898 0.908910 TGTGTGAGACTTGGGTGTGT 59.091 50.000 0.00 0.00 0.00 3.72
3844 11899 2.036958 TTGTGTGAGACTTGGGTGTG 57.963 50.000 0.00 0.00 0.00 3.82
3845 11900 2.799126 TTTGTGTGAGACTTGGGTGT 57.201 45.000 0.00 0.00 0.00 4.16
3846 11901 3.016736 ACTTTTGTGTGAGACTTGGGTG 58.983 45.455 0.00 0.00 0.00 4.61
3847 11902 3.366052 ACTTTTGTGTGAGACTTGGGT 57.634 42.857 0.00 0.00 0.00 4.51
3848 11903 4.196193 TGTACTTTTGTGTGAGACTTGGG 58.804 43.478 0.00 0.00 0.00 4.12
3849 11904 6.147821 CCTATGTACTTTTGTGTGAGACTTGG 59.852 42.308 0.00 0.00 0.00 3.61
3850 11905 6.706270 ACCTATGTACTTTTGTGTGAGACTTG 59.294 38.462 0.00 0.00 0.00 3.16
3851 11906 6.827727 ACCTATGTACTTTTGTGTGAGACTT 58.172 36.000 0.00 0.00 0.00 3.01
3852 11907 6.420913 ACCTATGTACTTTTGTGTGAGACT 57.579 37.500 0.00 0.00 0.00 3.24
3853 11908 7.492352 AAACCTATGTACTTTTGTGTGAGAC 57.508 36.000 0.00 0.00 0.00 3.36
3854 11909 7.468084 GCAAAACCTATGTACTTTTGTGTGAGA 60.468 37.037 14.89 0.00 37.26 3.27
3855 11910 6.636850 GCAAAACCTATGTACTTTTGTGTGAG 59.363 38.462 14.89 0.00 37.26 3.51
3856 11911 6.320164 AGCAAAACCTATGTACTTTTGTGTGA 59.680 34.615 14.89 0.00 37.26 3.58
3857 11912 6.417635 CAGCAAAACCTATGTACTTTTGTGTG 59.582 38.462 14.89 10.70 37.26 3.82
3858 11913 6.320164 TCAGCAAAACCTATGTACTTTTGTGT 59.680 34.615 14.89 4.72 37.26 3.72
3859 11914 6.734137 TCAGCAAAACCTATGTACTTTTGTG 58.266 36.000 14.89 12.34 37.26 3.33
3860 11915 6.016276 CCTCAGCAAAACCTATGTACTTTTGT 60.016 38.462 14.89 4.12 37.26 2.83
3861 11916 6.381801 CCTCAGCAAAACCTATGTACTTTTG 58.618 40.000 11.10 11.10 37.75 2.44
3862 11917 5.476945 CCCTCAGCAAAACCTATGTACTTTT 59.523 40.000 0.00 0.00 0.00 2.27
3863 11918 5.010282 CCCTCAGCAAAACCTATGTACTTT 58.990 41.667 0.00 0.00 0.00 2.66
3864 11919 4.589908 CCCTCAGCAAAACCTATGTACTT 58.410 43.478 0.00 0.00 0.00 2.24
3865 11920 3.622455 GCCCTCAGCAAAACCTATGTACT 60.622 47.826 0.00 0.00 42.97 2.73
3866 11921 2.683362 GCCCTCAGCAAAACCTATGTAC 59.317 50.000 0.00 0.00 42.97 2.90
3867 11922 2.999331 GCCCTCAGCAAAACCTATGTA 58.001 47.619 0.00 0.00 42.97 2.29
3868 11923 1.839424 GCCCTCAGCAAAACCTATGT 58.161 50.000 0.00 0.00 42.97 2.29
3880 11935 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
3881 11936 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
3882 11937 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
3883 11938 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
3892 11947 2.430332 TCCTTTTTGTGGGCTTGTTGAG 59.570 45.455 0.00 0.00 0.00 3.02
3893 11948 2.461695 TCCTTTTTGTGGGCTTGTTGA 58.538 42.857 0.00 0.00 0.00 3.18
3894 11949 2.977772 TCCTTTTTGTGGGCTTGTTG 57.022 45.000 0.00 0.00 0.00 3.33
3895 11950 3.990959 TTTCCTTTTTGTGGGCTTGTT 57.009 38.095 0.00 0.00 0.00 2.83
3896 11951 3.990959 TTTTCCTTTTTGTGGGCTTGT 57.009 38.095 0.00 0.00 0.00 3.16
3914 11969 1.801025 CGGCTGCCGTGTTTTCTTTTT 60.801 47.619 31.72 0.00 42.73 1.94
3915 11970 0.248866 CGGCTGCCGTGTTTTCTTTT 60.249 50.000 31.72 0.00 42.73 2.27
3916 11971 1.358759 CGGCTGCCGTGTTTTCTTT 59.641 52.632 31.72 0.00 42.73 2.52
3917 11972 3.030652 CGGCTGCCGTGTTTTCTT 58.969 55.556 31.72 0.00 42.73 2.52
3935 11990 1.521681 CGCCTTCCTCGCCTTTAGG 60.522 63.158 0.00 0.00 38.53 2.69
3936 11991 2.174319 GCGCCTTCCTCGCCTTTAG 61.174 63.158 0.00 0.00 46.18 1.85
3937 11992 2.125269 GCGCCTTCCTCGCCTTTA 60.125 61.111 0.00 0.00 46.18 1.85
3943 11998 0.598680 CTGATTAGGCGCCTTCCTCG 60.599 60.000 37.74 17.00 37.66 4.63
3944 11999 0.250081 CCTGATTAGGCGCCTTCCTC 60.250 60.000 37.74 26.77 37.25 3.71
3945 12000 1.832912 CCTGATTAGGCGCCTTCCT 59.167 57.895 37.74 19.79 37.25 3.36
3946 12001 4.464262 CCTGATTAGGCGCCTTCC 57.536 61.111 37.74 23.31 37.25 3.46
3955 12010 0.033228 CTCCGCCAGAGCCTGATTAG 59.967 60.000 4.00 0.00 35.31 1.73
3956 12011 1.402896 CCTCCGCCAGAGCCTGATTA 61.403 60.000 4.00 0.00 41.74 1.75
3957 12012 2.739996 CCTCCGCCAGAGCCTGATT 61.740 63.158 4.00 0.00 41.74 2.57
3958 12013 3.160047 CCTCCGCCAGAGCCTGAT 61.160 66.667 4.00 0.00 41.74 2.90
3991 12046 4.129737 ATGACCGTCCGCCTGTCG 62.130 66.667 0.00 0.00 38.08 4.35
3992 12047 2.202756 GATGACCGTCCGCCTGTC 60.203 66.667 0.00 0.00 0.00 3.51
3993 12048 4.129737 CGATGACCGTCCGCCTGT 62.130 66.667 0.00 0.00 0.00 4.00
3994 12049 3.138930 ATCGATGACCGTCCGCCTG 62.139 63.158 0.00 0.00 39.75 4.85
3995 12050 2.833582 ATCGATGACCGTCCGCCT 60.834 61.111 0.00 0.00 39.75 5.52
3996 12051 2.354773 GATCGATGACCGTCCGCC 60.355 66.667 0.54 0.00 39.75 6.13
3997 12052 2.726180 CGATCGATGACCGTCCGC 60.726 66.667 10.26 0.00 39.75 5.54
3998 12053 2.051256 CCGATCGATGACCGTCCG 60.051 66.667 18.66 0.00 39.75 4.79
3999 12054 1.283181 CTCCGATCGATGACCGTCC 59.717 63.158 18.66 0.00 39.75 4.79
4000 12055 1.283181 CCTCCGATCGATGACCGTC 59.717 63.158 18.66 0.00 39.75 4.79
4001 12056 1.445716 GACCTCCGATCGATGACCGT 61.446 60.000 18.66 3.32 39.75 4.83
4002 12057 1.283181 GACCTCCGATCGATGACCG 59.717 63.158 18.66 0.00 40.25 4.79
4003 12058 1.283181 CGACCTCCGATCGATGACC 59.717 63.158 18.66 1.71 42.25 4.02
4004 12059 1.283181 CCGACCTCCGATCGATGAC 59.717 63.158 18.66 3.94 42.25 3.06
4005 12060 2.552819 GCCGACCTCCGATCGATGA 61.553 63.158 18.66 5.19 42.25 2.92
4006 12061 2.049985 GCCGACCTCCGATCGATG 60.050 66.667 18.66 8.51 42.25 3.84
4007 12062 3.661131 CGCCGACCTCCGATCGAT 61.661 66.667 18.66 0.00 42.25 3.59
4008 12063 4.843719 TCGCCGACCTCCGATCGA 62.844 66.667 18.66 1.60 42.25 3.59
4009 12064 3.661131 ATCGCCGACCTCCGATCG 61.661 66.667 8.51 8.51 39.78 3.69
4010 12065 2.049985 CATCGCCGACCTCCGATC 60.050 66.667 0.00 0.00 41.76 3.69
4011 12066 2.076622 CTTCATCGCCGACCTCCGAT 62.077 60.000 0.00 0.00 44.21 4.18
4012 12067 2.752640 TTCATCGCCGACCTCCGA 60.753 61.111 0.00 0.00 41.76 4.55
4013 12068 2.278857 CTTCATCGCCGACCTCCG 60.279 66.667 0.00 0.00 38.18 4.63
4014 12069 2.107141 CCTTCATCGCCGACCTCC 59.893 66.667 0.00 0.00 0.00 4.30
4015 12070 2.586357 GCCTTCATCGCCGACCTC 60.586 66.667 0.00 0.00 0.00 3.85
4016 12071 4.514577 CGCCTTCATCGCCGACCT 62.515 66.667 0.00 0.00 0.00 3.85
4018 12073 4.508128 TCCGCCTTCATCGCCGAC 62.508 66.667 0.00 0.00 0.00 4.79
4019 12074 4.207281 CTCCGCCTTCATCGCCGA 62.207 66.667 0.00 0.00 0.00 5.54
4020 12075 3.506059 ATCTCCGCCTTCATCGCCG 62.506 63.158 0.00 0.00 0.00 6.46
4021 12076 1.958205 CATCTCCGCCTTCATCGCC 60.958 63.158 0.00 0.00 0.00 5.54
4022 12077 1.958205 CCATCTCCGCCTTCATCGC 60.958 63.158 0.00 0.00 0.00 4.58
4023 12078 1.958205 GCCATCTCCGCCTTCATCG 60.958 63.158 0.00 0.00 0.00 3.84
4024 12079 1.958205 CGCCATCTCCGCCTTCATC 60.958 63.158 0.00 0.00 0.00 2.92
4025 12080 2.109799 CGCCATCTCCGCCTTCAT 59.890 61.111 0.00 0.00 0.00 2.57
4026 12081 3.371097 GACGCCATCTCCGCCTTCA 62.371 63.158 0.00 0.00 0.00 3.02
4027 12082 2.586357 GACGCCATCTCCGCCTTC 60.586 66.667 0.00 0.00 0.00 3.46
4028 12083 4.514577 CGACGCCATCTCCGCCTT 62.515 66.667 0.00 0.00 0.00 4.35
4048 12103 4.176752 CTTAGCCGCCCCCAGGAC 62.177 72.222 0.00 0.00 33.47 3.85
4060 12115 1.090052 ATCTTTGGCGTCCGCTTAGC 61.090 55.000 11.82 0.00 41.60 3.09
4061 12116 0.652592 CATCTTTGGCGTCCGCTTAG 59.347 55.000 11.82 6.74 41.60 2.18
4062 12117 1.366111 GCATCTTTGGCGTCCGCTTA 61.366 55.000 11.82 0.00 41.60 3.09
4063 12118 2.690778 GCATCTTTGGCGTCCGCTT 61.691 57.895 11.82 0.00 41.60 4.68
4064 12119 3.127533 GCATCTTTGGCGTCCGCT 61.128 61.111 11.82 0.00 41.60 5.52
4065 12120 2.855728 CTTGCATCTTTGGCGTCCGC 62.856 60.000 2.45 2.45 41.06 5.54
4066 12121 1.135315 CTTGCATCTTTGGCGTCCG 59.865 57.895 0.00 0.00 0.00 4.79
4067 12122 0.881118 TTCTTGCATCTTTGGCGTCC 59.119 50.000 0.00 0.00 0.00 4.79
4068 12123 2.319472 GTTTCTTGCATCTTTGGCGTC 58.681 47.619 0.00 0.00 0.00 5.19
4069 12124 1.000274 GGTTTCTTGCATCTTTGGCGT 60.000 47.619 0.00 0.00 0.00 5.68
4070 12125 1.000385 TGGTTTCTTGCATCTTTGGCG 60.000 47.619 0.00 0.00 0.00 5.69
4071 12126 2.297033 TCTGGTTTCTTGCATCTTTGGC 59.703 45.455 0.00 0.00 0.00 4.52
4072 12127 3.822735 TCTCTGGTTTCTTGCATCTTTGG 59.177 43.478 0.00 0.00 0.00 3.28
4073 12128 5.443185 TTCTCTGGTTTCTTGCATCTTTG 57.557 39.130 0.00 0.00 0.00 2.77
4074 12129 6.661304 AATTCTCTGGTTTCTTGCATCTTT 57.339 33.333 0.00 0.00 0.00 2.52
4075 12130 6.266103 TCAAATTCTCTGGTTTCTTGCATCTT 59.734 34.615 0.00 0.00 0.00 2.40
4076 12131 5.771666 TCAAATTCTCTGGTTTCTTGCATCT 59.228 36.000 0.00 0.00 0.00 2.90
4077 12132 6.017400 TCAAATTCTCTGGTTTCTTGCATC 57.983 37.500 0.00 0.00 0.00 3.91
4078 12133 6.266103 TCTTCAAATTCTCTGGTTTCTTGCAT 59.734 34.615 0.00 0.00 0.00 3.96
4079 12134 5.593909 TCTTCAAATTCTCTGGTTTCTTGCA 59.406 36.000 0.00 0.00 0.00 4.08
4080 12135 6.076981 TCTTCAAATTCTCTGGTTTCTTGC 57.923 37.500 0.00 0.00 0.00 4.01
4081 12136 7.115947 GCAATCTTCAAATTCTCTGGTTTCTTG 59.884 37.037 0.00 0.00 0.00 3.02
4082 12137 7.150640 GCAATCTTCAAATTCTCTGGTTTCTT 58.849 34.615 0.00 0.00 0.00 2.52
4083 12138 6.569226 CGCAATCTTCAAATTCTCTGGTTTCT 60.569 38.462 0.00 0.00 0.00 2.52
4084 12139 5.570589 CGCAATCTTCAAATTCTCTGGTTTC 59.429 40.000 0.00 0.00 0.00 2.78
4085 12140 5.010012 ACGCAATCTTCAAATTCTCTGGTTT 59.990 36.000 0.00 0.00 0.00 3.27
4086 12141 4.520492 ACGCAATCTTCAAATTCTCTGGTT 59.480 37.500 0.00 0.00 0.00 3.67
4087 12142 4.074970 ACGCAATCTTCAAATTCTCTGGT 58.925 39.130 0.00 0.00 0.00 4.00
4088 12143 4.154737 TGACGCAATCTTCAAATTCTCTGG 59.845 41.667 0.00 0.00 0.00 3.86
4089 12144 5.106791 ACTGACGCAATCTTCAAATTCTCTG 60.107 40.000 0.00 0.00 0.00 3.35
4090 12145 4.999950 ACTGACGCAATCTTCAAATTCTCT 59.000 37.500 0.00 0.00 0.00 3.10
4091 12146 5.288543 ACTGACGCAATCTTCAAATTCTC 57.711 39.130 0.00 0.00 0.00 2.87
4092 12147 5.163814 GCTACTGACGCAATCTTCAAATTCT 60.164 40.000 0.00 0.00 0.00 2.40
4093 12148 5.024555 GCTACTGACGCAATCTTCAAATTC 58.975 41.667 0.00 0.00 0.00 2.17
4094 12149 4.697352 AGCTACTGACGCAATCTTCAAATT 59.303 37.500 0.00 0.00 0.00 1.82
4095 12150 4.256920 AGCTACTGACGCAATCTTCAAAT 58.743 39.130 0.00 0.00 0.00 2.32
4096 12151 3.664107 AGCTACTGACGCAATCTTCAAA 58.336 40.909 0.00 0.00 0.00 2.69
4097 12152 3.254060 GAGCTACTGACGCAATCTTCAA 58.746 45.455 0.00 0.00 0.00 2.69
4098 12153 2.732282 CGAGCTACTGACGCAATCTTCA 60.732 50.000 0.00 0.00 0.00 3.02
4099 12154 1.849219 CGAGCTACTGACGCAATCTTC 59.151 52.381 0.00 0.00 0.00 2.87
4100 12155 1.202582 ACGAGCTACTGACGCAATCTT 59.797 47.619 0.00 0.00 0.00 2.40
4101 12156 0.811915 ACGAGCTACTGACGCAATCT 59.188 50.000 0.00 0.00 0.00 2.40
4102 12157 1.192793 GACGAGCTACTGACGCAATC 58.807 55.000 0.00 0.00 0.00 2.67
4103 12158 0.523546 CGACGAGCTACTGACGCAAT 60.524 55.000 0.00 0.00 0.00 3.56
4104 12159 1.154282 CGACGAGCTACTGACGCAA 60.154 57.895 0.00 0.00 0.00 4.85
4105 12160 1.571215 TTCGACGAGCTACTGACGCA 61.571 55.000 0.00 0.00 0.00 5.24
4106 12161 0.858135 CTTCGACGAGCTACTGACGC 60.858 60.000 0.00 0.00 0.00 5.19
4107 12162 0.720027 TCTTCGACGAGCTACTGACG 59.280 55.000 0.00 0.00 0.00 4.35
4108 12163 1.062880 CCTCTTCGACGAGCTACTGAC 59.937 57.143 13.21 0.00 0.00 3.51
4109 12164 1.370609 CCTCTTCGACGAGCTACTGA 58.629 55.000 13.21 0.00 0.00 3.41
4110 12165 0.378962 CCCTCTTCGACGAGCTACTG 59.621 60.000 13.21 0.00 0.00 2.74
4111 12166 0.748729 CCCCTCTTCGACGAGCTACT 60.749 60.000 13.21 0.00 0.00 2.57
4112 12167 1.031029 ACCCCTCTTCGACGAGCTAC 61.031 60.000 13.21 0.00 0.00 3.58
4113 12168 1.302285 ACCCCTCTTCGACGAGCTA 59.698 57.895 13.21 0.00 0.00 3.32
4114 12169 2.035940 ACCCCTCTTCGACGAGCT 59.964 61.111 13.21 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.