Multiple sequence alignment - TraesCS2B01G167400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G167400 chr2B 100.000 3182 0 0 1 3182 140746858 140750039 0.000000e+00 5877.0
1 TraesCS2B01G167400 chr2B 87.234 141 18 0 1501 1641 780673634 780673774 9.130000e-36 161.0
2 TraesCS2B01G167400 chr2B 86.806 144 15 2 1501 1642 780676356 780676215 1.180000e-34 158.0
3 TraesCS2B01G167400 chr2A 94.271 2723 113 19 1 2684 87853217 87855935 0.000000e+00 4124.0
4 TraesCS2B01G167400 chr2A 92.112 393 24 5 2793 3182 87856022 87856410 6.000000e-152 547.0
5 TraesCS2B01G167400 chr2A 83.099 142 24 0 1501 1642 776498154 776498295 2.580000e-26 130.0
6 TraesCS2B01G167400 chr7A 98.107 1479 26 1 1 1477 571270573 571272051 0.000000e+00 2575.0
7 TraesCS2B01G167400 chr2D 94.038 889 48 3 1008 1894 87663391 87664276 0.000000e+00 1343.0
8 TraesCS2B01G167400 chr2D 88.969 834 49 26 1889 2684 87664661 87665489 0.000000e+00 990.0
9 TraesCS2B01G167400 chr2D 91.520 342 19 6 2842 3182 87665653 87665985 2.240000e-126 462.0
10 TraesCS2B01G167400 chr2D 84.076 157 23 2 1501 1656 651283325 651283170 1.980000e-32 150.0
11 TraesCS2B01G167400 chr4A 86.250 80 10 1 2682 2761 1155648 1155570 5.660000e-13 86.1
12 TraesCS2B01G167400 chr4A 72.425 301 72 10 592 887 624228061 624228355 5.660000e-13 86.1
13 TraesCS2B01G167400 chr5B 72.459 305 65 16 592 887 686541901 686542195 2.630000e-11 80.5
14 TraesCS2B01G167400 chr5B 100.000 38 0 0 1592 1629 98515275 98515312 1.580000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G167400 chr2B 140746858 140750039 3181 False 5877.000000 5877 100.0000 1 3182 1 chr2B.!!$F1 3181
1 TraesCS2B01G167400 chr2A 87853217 87856410 3193 False 2335.500000 4124 93.1915 1 3182 2 chr2A.!!$F2 3181
2 TraesCS2B01G167400 chr7A 571270573 571272051 1478 False 2575.000000 2575 98.1070 1 1477 1 chr7A.!!$F1 1476
3 TraesCS2B01G167400 chr2D 87663391 87665985 2594 False 931.666667 1343 91.5090 1008 3182 3 chr2D.!!$F1 2174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 1.601903 CACGTTGTAGCTTTCTTGGCA 59.398 47.619 0.0 0.0 0.00 4.92 F
1182 1185 0.601558 CCTGCAAGCAACTCAAGCAT 59.398 50.000 0.0 0.0 34.35 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1286 1.377536 GCAGAGCACCTCAATTCTCC 58.622 55.0 0.0 0.0 32.06 3.71 R
2651 3089 0.684805 AACCAACTCCCCGTTTTGCA 60.685 50.0 0.0 0.0 32.27 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.032799 AGTGTGTGTTTGGTACATTGCG 59.967 45.455 0.00 0.00 39.39 4.85
361 362 1.601903 CACGTTGTAGCTTTCTTGGCA 59.398 47.619 0.00 0.00 0.00 4.92
363 364 2.032924 ACGTTGTAGCTTTCTTGGCAAC 59.967 45.455 0.00 0.00 34.61 4.17
954 955 4.724602 GCTCACTGGCTCGCGACA 62.725 66.667 3.71 0.98 0.00 4.35
1029 1032 5.714863 AGGATCCTAGAGACTGAACATGAT 58.285 41.667 14.27 0.00 0.00 2.45
1182 1185 0.601558 CCTGCAAGCAACTCAAGCAT 59.398 50.000 0.00 0.00 34.35 3.79
1221 1224 2.038952 TGATGTTGGGGACTCTTCAGTG 59.961 50.000 0.00 0.00 30.63 3.66
1581 1584 5.375417 TGTCTATTTGTGGCATCTTTGTG 57.625 39.130 0.00 0.00 0.00 3.33
1659 1662 3.974871 TTTTCTGTGCGGGTACTTTTC 57.025 42.857 0.00 0.00 0.00 2.29
1792 1795 3.074504 TGTACTGAATGCGTCGATACC 57.925 47.619 0.00 0.00 0.00 2.73
1794 1797 2.493713 ACTGAATGCGTCGATACCTC 57.506 50.000 0.00 0.00 0.00 3.85
1836 1839 1.022735 GCCAGGATGATGAGCAGTTG 58.977 55.000 0.00 0.00 39.69 3.16
1933 2326 2.039480 TGGCAACTGAGAGAGCTTGAAT 59.961 45.455 0.00 0.00 37.61 2.57
1968 2361 3.092301 GCCCCTAGAGCAACAAATTTCT 58.908 45.455 0.00 0.00 0.00 2.52
2042 2435 7.933577 TCTCAAAGAAGATAAATATCCATGCGT 59.066 33.333 0.00 0.00 33.17 5.24
2063 2456 3.127548 GTGGACTGCGATTCAATGAACAT 59.872 43.478 0.00 0.00 0.00 2.71
2112 2505 3.706086 ACAAAGGTGAGCAGGAAACAATT 59.294 39.130 0.00 0.00 0.00 2.32
2252 2645 4.691216 ACTTATGAACGGCTTGTTTCTCTC 59.309 41.667 0.00 0.00 42.09 3.20
2273 2670 7.233553 TCTCTCTTTCTCACTGTAGAATTTCCA 59.766 37.037 0.00 0.00 35.48 3.53
2358 2755 3.206150 CCTGTACTGTGCAAGAGTGTTT 58.794 45.455 9.44 0.00 42.32 2.83
2367 2764 1.135859 GCAAGAGTGTTTGATCCTGCG 60.136 52.381 0.00 0.00 0.00 5.18
2374 2771 1.271325 TGTTTGATCCTGCGGTGTCAT 60.271 47.619 0.00 0.00 0.00 3.06
2415 2813 5.363580 ACCTGGAAATATTTACCTTGCCATG 59.636 40.000 7.97 6.53 0.00 3.66
2526 2962 2.411904 GAAGGCTCTCAGTCACAACAG 58.588 52.381 0.00 0.00 0.00 3.16
2532 2968 3.616379 GCTCTCAGTCACAACAGATAAGC 59.384 47.826 0.00 0.00 0.00 3.09
2575 3013 8.489489 ACTGGATATAACAATGTGTCTTCAGAT 58.511 33.333 8.87 0.00 0.00 2.90
2581 3019 2.751259 CAATGTGTCTTCAGATGGGGTG 59.249 50.000 0.00 0.00 0.00 4.61
2586 3024 2.174639 TGTCTTCAGATGGGGTGTGTTT 59.825 45.455 0.00 0.00 0.00 2.83
2588 3026 2.162681 CTTCAGATGGGGTGTGTTTCC 58.837 52.381 0.00 0.00 0.00 3.13
2595 3033 2.904866 GGTGTGTTTCCCTGCGCA 60.905 61.111 10.98 10.98 0.00 6.09
2654 3092 2.106074 CGTTCCGCATAAGCCTGCA 61.106 57.895 4.64 0.00 42.40 4.41
2691 3129 5.888982 TTCAAACTGAACTACTCCCTTCT 57.111 39.130 0.00 0.00 30.26 2.85
2692 3130 5.888982 TCAAACTGAACTACTCCCTTCTT 57.111 39.130 0.00 0.00 0.00 2.52
2693 3131 6.248569 TCAAACTGAACTACTCCCTTCTTT 57.751 37.500 0.00 0.00 0.00 2.52
2694 3132 6.659824 TCAAACTGAACTACTCCCTTCTTTT 58.340 36.000 0.00 0.00 0.00 2.27
2695 3133 6.766467 TCAAACTGAACTACTCCCTTCTTTTC 59.234 38.462 0.00 0.00 0.00 2.29
2696 3134 6.502074 AACTGAACTACTCCCTTCTTTTCT 57.498 37.500 0.00 0.00 0.00 2.52
2697 3135 7.613551 AACTGAACTACTCCCTTCTTTTCTA 57.386 36.000 0.00 0.00 0.00 2.10
2698 3136 7.613551 ACTGAACTACTCCCTTCTTTTCTAA 57.386 36.000 0.00 0.00 0.00 2.10
2699 3137 8.208575 ACTGAACTACTCCCTTCTTTTCTAAT 57.791 34.615 0.00 0.00 0.00 1.73
2700 3138 8.661345 ACTGAACTACTCCCTTCTTTTCTAATT 58.339 33.333 0.00 0.00 0.00 1.40
2708 3146 9.508721 ACTCCCTTCTTTTCTAATTATAGGACT 57.491 33.333 0.00 0.00 0.00 3.85
2729 3167 9.367160 AGGACTTTTTAGAGATTTGATTTTGGA 57.633 29.630 0.00 0.00 0.00 3.53
2730 3168 9.411801 GGACTTTTTAGAGATTTGATTTTGGAC 57.588 33.333 0.00 0.00 0.00 4.02
2739 3177 9.347240 AGAGATTTGATTTTGGACTACATATGG 57.653 33.333 7.80 0.00 0.00 2.74
2740 3178 9.342308 GAGATTTGATTTTGGACTACATATGGA 57.658 33.333 7.80 0.00 0.00 3.41
2741 3179 9.872684 AGATTTGATTTTGGACTACATATGGAT 57.127 29.630 7.80 0.00 0.00 3.41
2742 3180 9.903682 GATTTGATTTTGGACTACATATGGATG 57.096 33.333 7.80 0.00 39.16 3.51
2743 3181 9.645128 ATTTGATTTTGGACTACATATGGATGA 57.355 29.630 7.80 0.00 36.48 2.92
2744 3182 9.473007 TTTGATTTTGGACTACATATGGATGAA 57.527 29.630 7.80 0.00 36.48 2.57
2745 3183 9.645128 TTGATTTTGGACTACATATGGATGAAT 57.355 29.630 7.80 0.00 36.48 2.57
2752 3190 9.997172 TGGACTACATATGGATGAATATAGACT 57.003 33.333 7.80 0.00 36.48 3.24
2773 3211 8.993404 AGACTTATATTTAGGAACGGAGTAGT 57.007 34.615 0.00 0.00 45.00 2.73
2797 3306 9.104965 AGTACATCGCTAACAAAATGCTATAAA 57.895 29.630 0.00 0.00 0.00 1.40
2831 3340 1.895020 TTGACTTCATAGCGGGGCGT 61.895 55.000 0.00 0.00 0.00 5.68
2883 3490 2.571212 AGCGGTGTCATGAACTGAAAA 58.429 42.857 16.35 0.00 35.07 2.29
2885 3492 2.032799 GCGGTGTCATGAACTGAAAACA 59.967 45.455 16.35 0.00 35.07 2.83
2921 3528 7.496529 TCAAACTATCAGACCTGTTTCTTTG 57.503 36.000 0.00 2.98 31.30 2.77
2933 3540 2.687935 TGTTTCTTTGTTGGGAGTCTGC 59.312 45.455 0.00 0.00 0.00 4.26
2959 3566 5.410132 TCGACGCATTTCAAAGGAGAAAATA 59.590 36.000 0.00 0.00 40.54 1.40
3013 3620 7.259882 TGAAAATGCTGATCATACCATGTTTC 58.740 34.615 0.00 11.52 34.33 2.78
3014 3621 6.778834 AAATGCTGATCATACCATGTTTCA 57.221 33.333 0.00 0.00 34.33 2.69
3016 3623 5.823209 TGCTGATCATACCATGTTTCAAG 57.177 39.130 0.00 0.00 0.00 3.02
3017 3624 5.255687 TGCTGATCATACCATGTTTCAAGT 58.744 37.500 0.00 0.00 0.00 3.16
3063 3673 8.299570 GGTAATGCTAATCCTATCATGTTTTGG 58.700 37.037 0.00 0.00 0.00 3.28
3065 3675 8.537728 AATGCTAATCCTATCATGTTTTGGAA 57.462 30.769 0.00 0.00 0.00 3.53
3098 3708 1.529226 TGCAAGACCCGTACCAAATG 58.471 50.000 0.00 0.00 0.00 2.32
3105 3715 5.231702 AGACCCGTACCAAATGTTAAAGA 57.768 39.130 0.00 0.00 0.00 2.52
3131 3741 3.214328 ACCACAAACTAAGAACTGCCAG 58.786 45.455 0.00 0.00 0.00 4.85
3144 3754 1.670811 ACTGCCAGACAACAACGAAAG 59.329 47.619 0.00 0.00 0.00 2.62
3145 3755 1.939934 CTGCCAGACAACAACGAAAGA 59.060 47.619 0.00 0.00 0.00 2.52
3169 3779 4.469945 TGACAGGTTCCAATCCCTACTTAG 59.530 45.833 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 2.094234 GGTCAAAACCCTAATGCGCAAT 60.094 45.455 17.11 9.36 39.93 3.56
118 119 0.172578 GGCGGTCAAAACCCTAATGC 59.827 55.000 0.00 0.00 43.21 3.56
361 362 1.539827 GCTCCTTATTTGGTGCACGTT 59.460 47.619 11.45 0.00 43.67 3.99
363 364 3.996825 GCTCCTTATTTGGTGCACG 57.003 52.632 11.45 0.00 43.67 5.34
426 427 7.215789 TGAAGTGGTTGTGCAAATAATTTGAT 58.784 30.769 0.00 0.00 43.26 2.57
664 665 0.249447 CGTGGCTGTGTCAACTCTCA 60.249 55.000 0.00 0.00 0.00 3.27
954 955 0.539986 ACTACCCCGCAATCAATCGT 59.460 50.000 0.00 0.00 0.00 3.73
1182 1185 4.532126 ACATCACAGTGGGACAGAGATAAA 59.468 41.667 0.00 0.00 41.80 1.40
1221 1224 2.368439 TCTGGTGCATTTATCTGCCAC 58.632 47.619 0.00 0.00 41.58 5.01
1283 1286 1.377536 GCAGAGCACCTCAATTCTCC 58.622 55.000 0.00 0.00 32.06 3.71
1581 1584 5.975693 TTGTCCATAACAGGTCAAAATCC 57.024 39.130 0.00 0.00 39.58 3.01
1659 1662 9.341899 CTAAAGAAAGTAAAAATGAATGACCGG 57.658 33.333 0.00 0.00 0.00 5.28
1695 1698 8.681806 CCCAAAATGTATGTTATGTGTGATACA 58.318 33.333 0.00 0.00 44.87 2.29
1696 1699 8.898761 TCCCAAAATGTATGTTATGTGTGATAC 58.101 33.333 0.00 0.00 0.00 2.24
1792 1795 3.344515 CATGGTCCCATATCTGCATGAG 58.655 50.000 0.00 0.00 34.91 2.90
1794 1797 1.816835 GCATGGTCCCATATCTGCATG 59.183 52.381 0.00 0.00 34.91 4.06
1836 1839 2.978489 CTCGTAACCTGTCGTTGTTCTC 59.022 50.000 0.00 0.00 35.79 2.87
2042 2435 2.777094 TGTTCATTGAATCGCAGTCCA 58.223 42.857 1.78 0.00 0.00 4.02
2063 2456 2.372172 GGACAGAAACCTCCTCTTGGAA 59.628 50.000 0.00 0.00 42.66 3.53
2112 2505 2.616256 CCCATCTGTAAGCTGCTTGACA 60.616 50.000 24.35 20.16 0.00 3.58
2252 2645 7.025963 GCAATGGAAATTCTACAGTGAGAAAG 58.974 38.462 0.00 0.00 38.89 2.62
2331 2728 4.101119 ACTCTTGCACAGTACAGGTAAAGT 59.899 41.667 0.00 0.00 0.00 2.66
2367 2764 7.399523 GTTTAATCAATCTACACGATGACACC 58.600 38.462 0.00 0.00 31.20 4.16
2374 2771 6.288941 TCCAGGTTTAATCAATCTACACGA 57.711 37.500 0.00 0.00 0.00 4.35
2415 2813 2.086054 AGAAGTTGACGGCACATCTC 57.914 50.000 0.00 0.00 0.00 2.75
2445 2849 4.689612 AACCTGACACTAAAGAGCAGAA 57.310 40.909 0.00 0.00 0.00 3.02
2526 2962 2.960819 ACAGGAAGACACACGCTTATC 58.039 47.619 0.00 0.00 0.00 1.75
2532 2968 3.442625 TCCAGTATACAGGAAGACACACG 59.557 47.826 14.21 0.00 0.00 4.49
2581 3019 1.448985 TTATCTGCGCAGGGAAACAC 58.551 50.000 35.36 0.00 0.00 3.32
2586 3024 2.945008 CTGAAAATTATCTGCGCAGGGA 59.055 45.455 35.36 21.44 0.00 4.20
2588 3026 2.097954 TGCTGAAAATTATCTGCGCAGG 59.902 45.455 35.36 18.08 44.45 4.85
2651 3089 0.684805 AACCAACTCCCCGTTTTGCA 60.685 50.000 0.00 0.00 32.27 4.08
2654 3092 2.146920 TTGAACCAACTCCCCGTTTT 57.853 45.000 0.00 0.00 32.27 2.43
2703 3141 9.367160 TCCAAAATCAAATCTCTAAAAAGTCCT 57.633 29.630 0.00 0.00 0.00 3.85
2704 3142 9.411801 GTCCAAAATCAAATCTCTAAAAAGTCC 57.588 33.333 0.00 0.00 0.00 3.85
2713 3151 9.347240 CCATATGTAGTCCAAAATCAAATCTCT 57.653 33.333 1.24 0.00 0.00 3.10
2714 3152 9.342308 TCCATATGTAGTCCAAAATCAAATCTC 57.658 33.333 1.24 0.00 0.00 2.75
2715 3153 9.872684 ATCCATATGTAGTCCAAAATCAAATCT 57.127 29.630 1.24 0.00 0.00 2.40
2716 3154 9.903682 CATCCATATGTAGTCCAAAATCAAATC 57.096 33.333 1.24 0.00 0.00 2.17
2717 3155 9.645128 TCATCCATATGTAGTCCAAAATCAAAT 57.355 29.630 1.24 0.00 34.50 2.32
2718 3156 9.473007 TTCATCCATATGTAGTCCAAAATCAAA 57.527 29.630 1.24 0.00 34.50 2.69
2719 3157 9.645128 ATTCATCCATATGTAGTCCAAAATCAA 57.355 29.630 1.24 0.00 34.50 2.57
2726 3164 9.997172 AGTCTATATTCATCCATATGTAGTCCA 57.003 33.333 1.24 0.00 34.50 4.02
2748 3186 8.993404 ACTACTCCGTTCCTAAATATAAGTCT 57.007 34.615 0.00 0.00 0.00 3.24
2750 3188 9.632638 TGTACTACTCCGTTCCTAAATATAAGT 57.367 33.333 0.00 0.00 0.00 2.24
2753 3191 8.939929 CGATGTACTACTCCGTTCCTAAATATA 58.060 37.037 0.00 0.00 0.00 0.86
2754 3192 7.574592 GCGATGTACTACTCCGTTCCTAAATAT 60.575 40.741 0.00 0.00 0.00 1.28
2755 3193 6.293626 GCGATGTACTACTCCGTTCCTAAATA 60.294 42.308 0.00 0.00 0.00 1.40
2756 3194 5.506982 GCGATGTACTACTCCGTTCCTAAAT 60.507 44.000 0.00 0.00 0.00 1.40
2757 3195 4.201950 GCGATGTACTACTCCGTTCCTAAA 60.202 45.833 0.00 0.00 0.00 1.85
2758 3196 3.313526 GCGATGTACTACTCCGTTCCTAA 59.686 47.826 0.00 0.00 0.00 2.69
2759 3197 2.874701 GCGATGTACTACTCCGTTCCTA 59.125 50.000 0.00 0.00 0.00 2.94
2760 3198 1.674962 GCGATGTACTACTCCGTTCCT 59.325 52.381 0.00 0.00 0.00 3.36
2761 3199 1.674962 AGCGATGTACTACTCCGTTCC 59.325 52.381 0.00 0.00 0.00 3.62
2762 3200 4.201851 TGTTAGCGATGTACTACTCCGTTC 60.202 45.833 0.00 0.00 0.00 3.95
2763 3201 3.691118 TGTTAGCGATGTACTACTCCGTT 59.309 43.478 0.00 0.00 0.00 4.44
2764 3202 3.273434 TGTTAGCGATGTACTACTCCGT 58.727 45.455 0.00 0.00 0.00 4.69
2765 3203 3.957671 TGTTAGCGATGTACTACTCCG 57.042 47.619 0.00 0.00 0.00 4.63
2766 3204 6.509677 GCATTTTGTTAGCGATGTACTACTCC 60.510 42.308 0.00 0.00 0.00 3.85
2767 3205 6.255887 AGCATTTTGTTAGCGATGTACTACTC 59.744 38.462 0.00 0.00 0.00 2.59
2768 3206 6.106673 AGCATTTTGTTAGCGATGTACTACT 58.893 36.000 0.00 0.00 0.00 2.57
2769 3207 6.345920 AGCATTTTGTTAGCGATGTACTAC 57.654 37.500 0.00 0.00 0.00 2.73
2770 3208 9.752961 TTATAGCATTTTGTTAGCGATGTACTA 57.247 29.630 0.00 0.00 0.00 1.82
2771 3209 8.657074 TTATAGCATTTTGTTAGCGATGTACT 57.343 30.769 0.00 0.00 0.00 2.73
2772 3210 9.878599 ATTTATAGCATTTTGTTAGCGATGTAC 57.121 29.630 0.00 0.00 0.00 2.90
2831 3340 2.822255 GCAGAACGGCGCCCAATA 60.822 61.111 23.46 0.00 0.00 1.90
2883 3490 8.861086 TCTGATAGTTTGAACTCTAAAGTCTGT 58.139 33.333 0.00 0.00 40.37 3.41
2885 3492 8.308207 GGTCTGATAGTTTGAACTCTAAAGTCT 58.692 37.037 0.00 0.00 40.37 3.24
2921 3528 1.079750 GTCGAGGCAGACTCCCAAC 60.080 63.158 0.00 0.00 43.57 3.77
2933 3540 1.394917 CTCCTTTGAAATGCGTCGAGG 59.605 52.381 0.00 0.00 0.00 4.63
2959 3566 1.684248 GCATTGAACATCTCCAGGGCT 60.684 52.381 0.00 0.00 0.00 5.19
3013 3620 9.003658 ACCTTCACAATTCTACATAAAGACTTG 57.996 33.333 0.00 3.31 40.26 3.16
3046 3656 9.258629 TCAAAGATTCCAAAACATGATAGGATT 57.741 29.630 0.00 0.00 0.00 3.01
3063 3673 6.753744 GGGTCTTGCATTACAATCAAAGATTC 59.246 38.462 0.00 0.00 37.72 2.52
3065 3675 5.163622 CGGGTCTTGCATTACAATCAAAGAT 60.164 40.000 0.00 0.00 37.72 2.40
3105 3715 5.705905 GGCAGTTCTTAGTTTGTGGTATCTT 59.294 40.000 0.00 0.00 0.00 2.40
3131 3741 3.560068 ACCTGTCATCTTTCGTTGTTGTC 59.440 43.478 0.00 0.00 0.00 3.18
3144 3754 3.456277 AGTAGGGATTGGAACCTGTCATC 59.544 47.826 0.00 0.00 37.72 2.92
3145 3755 3.464828 AGTAGGGATTGGAACCTGTCAT 58.535 45.455 0.00 0.00 37.72 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.