Multiple sequence alignment - TraesCS2B01G165600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G165600 chr2B 100.000 5322 0 0 1 5322 137815867 137810546 0.000000e+00 9828.0
1 TraesCS2B01G165600 chr2B 96.801 1782 52 2 1367 3148 137349335 137347559 0.000000e+00 2970.0
2 TraesCS2B01G165600 chr2B 89.803 1726 142 20 1358 3063 135357971 135359682 0.000000e+00 2182.0
3 TraesCS2B01G165600 chr2B 92.220 527 37 2 1 527 206491378 206491900 0.000000e+00 743.0
4 TraesCS2B01G165600 chr2B 92.161 523 37 2 5 527 206487484 206488002 0.000000e+00 736.0
5 TraesCS2B01G165600 chr2B 91.682 529 41 2 1 527 275256832 275256305 0.000000e+00 730.0
6 TraesCS2B01G165600 chr2B 91.461 527 44 1 2 527 148374896 148375422 0.000000e+00 723.0
7 TraesCS2B01G165600 chr2B 91.288 528 45 1 1 527 383078396 383077869 0.000000e+00 719.0
8 TraesCS2B01G165600 chr2B 80.040 1002 163 13 4025 4996 135710383 135709389 0.000000e+00 708.0
9 TraesCS2B01G165600 chr2B 78.821 1001 178 30 4020 5001 136625318 136626303 1.250000e-180 643.0
10 TraesCS2B01G165600 chr2B 92.573 377 22 5 3308 3683 137347114 137346743 2.180000e-148 536.0
11 TraesCS2B01G165600 chr2B 80.680 647 113 11 4361 5001 136954650 136955290 4.790000e-135 492.0
12 TraesCS2B01G165600 chr2B 96.139 259 8 1 3918 4176 137346230 137345974 6.370000e-114 422.0
13 TraesCS2B01G165600 chr2B 94.510 255 9 2 3673 3927 137346568 137346319 6.460000e-104 388.0
14 TraesCS2B01G165600 chr2B 98.817 169 2 0 5154 5322 453186927 453187095 8.660000e-78 302.0
15 TraesCS2B01G165600 chr2B 97.633 169 4 0 5154 5322 632914388 632914220 1.880000e-74 291.0
16 TraesCS2B01G165600 chr2B 95.294 170 7 1 5154 5322 262317559 262317728 8.790000e-68 268.0
17 TraesCS2B01G165600 chr2B 91.667 144 10 2 3541 3683 136635394 136635252 1.170000e-46 198.0
18 TraesCS2B01G165600 chr2B 90.728 151 6 1 3785 3927 136635006 136634856 1.510000e-45 195.0
19 TraesCS2B01G165600 chr2B 96.262 107 3 1 3203 3308 136635905 136635799 1.970000e-39 174.0
20 TraesCS2B01G165600 chr2B 82.822 163 25 2 3308 3469 135514262 135514422 5.560000e-30 143.0
21 TraesCS2B01G165600 chr2B 92.857 98 7 0 3200 3297 135516500 135516597 5.560000e-30 143.0
22 TraesCS2B01G165600 chr2B 82.716 162 26 1 3308 3469 182132271 182132112 5.560000e-30 143.0
23 TraesCS2B01G165600 chr2B 82.143 168 22 5 3308 3469 135465369 135465534 2.580000e-28 137.0
24 TraesCS2B01G165600 chr2B 100.000 33 0 0 4003 4035 136634731 136634699 1.600000e-05 62.1
25 TraesCS2B01G165600 chr2D 92.156 2282 96 22 923 3191 85704214 85702003 0.000000e+00 3145.0
26 TraesCS2B01G165600 chr2D 89.498 1733 136 20 1347 3063 83529905 83531607 0.000000e+00 2150.0
27 TraesCS2B01G165600 chr2D 94.648 953 27 4 4044 4996 85247969 85247041 0.000000e+00 1456.0
28 TraesCS2B01G165600 chr2D 92.857 924 58 5 2189 3106 84779058 84778137 0.000000e+00 1334.0
29 TraesCS2B01G165600 chr2D 92.349 928 59 8 2189 3106 84936634 84935709 0.000000e+00 1310.0
30 TraesCS2B01G165600 chr2D 80.851 987 155 18 4022 4980 85683344 85684324 0.000000e+00 745.0
31 TraesCS2B01G165600 chr2D 80.525 991 150 20 4025 4983 83842378 83841399 0.000000e+00 721.0
32 TraesCS2B01G165600 chr2D 77.241 993 192 28 4024 5001 85392127 85393100 7.790000e-153 551.0
33 TraesCS2B01G165600 chr2D 96.732 306 8 1 3918 4223 85701169 85700866 4.760000e-140 508.0
34 TraesCS2B01G165600 chr2D 76.429 997 199 28 4020 5001 84766792 84767767 1.710000e-139 507.0
35 TraesCS2B01G165600 chr2D 81.431 587 100 9 4419 5001 84925307 84925888 6.240000e-129 472.0
36 TraesCS2B01G165600 chr2D 98.324 179 3 0 3749 3927 85701419 85701241 1.110000e-81 315.0
37 TraesCS2B01G165600 chr2D 79.128 321 43 14 3322 3632 84778106 84777800 3.250000e-47 200.0
38 TraesCS2B01G165600 chr2D 91.724 145 9 3 3541 3683 85248640 85248497 1.170000e-46 198.0
39 TraesCS2B01G165600 chr2D 79.062 320 42 15 3322 3632 84935678 84935375 4.200000e-46 196.0
40 TraesCS2B01G165600 chr2D 91.781 146 5 1 3785 3923 85248251 85248106 4.200000e-46 196.0
41 TraesCS2B01G165600 chr2D 97.170 106 3 0 3203 3308 85249150 85249045 4.230000e-41 180.0
42 TraesCS2B01G165600 chr2D 98.969 97 1 0 5060 5156 85245991 85245895 1.970000e-39 174.0
43 TraesCS2B01G165600 chr2D 91.270 126 10 1 3308 3433 85701632 85701508 2.550000e-38 171.0
44 TraesCS2B01G165600 chr2D 95.327 107 4 1 3203 3308 85701954 85701848 9.170000e-38 169.0
45 TraesCS2B01G165600 chr2D 100.000 58 0 0 5004 5061 85246999 85246942 2.030000e-19 108.0
46 TraesCS2B01G165600 chr2D 95.161 62 3 0 843 904 85704262 85704201 1.220000e-16 99.0
47 TraesCS2B01G165600 chr2D 97.826 46 1 0 3485 3530 85701507 85701462 4.420000e-11 80.5
48 TraesCS2B01G165600 chr2D 100.000 33 0 0 4003 4035 85247977 85247945 1.600000e-05 62.1
49 TraesCS2B01G165600 chr2A 91.619 2279 101 26 923 3191 86062403 86060205 0.000000e+00 3068.0
50 TraesCS2B01G165600 chr2A 89.418 2287 120 47 923 3191 84227927 84230109 0.000000e+00 2771.0
51 TraesCS2B01G165600 chr2A 90.156 1859 131 23 1347 3199 84143625 84145437 0.000000e+00 2372.0
52 TraesCS2B01G165600 chr2A 90.055 1820 145 18 1344 3137 83984967 83986776 0.000000e+00 2326.0
53 TraesCS2B01G165600 chr2A 89.945 547 30 15 3679 4223 85808334 85807811 0.000000e+00 682.0
54 TraesCS2B01G165600 chr2A 79.541 1002 165 19 4025 4996 84609562 84608571 0.000000e+00 678.0
55 TraesCS2B01G165600 chr2A 89.416 548 32 16 3679 4223 85924241 85923717 0.000000e+00 667.0
56 TraesCS2B01G165600 chr2A 91.512 377 26 5 3308 3683 86059834 86059463 1.020000e-141 514.0
57 TraesCS2B01G165600 chr2A 88.158 380 25 11 3308 3683 85808853 85808490 8.190000e-118 435.0
58 TraesCS2B01G165600 chr2A 88.158 380 25 11 3308 3683 85924760 85924397 8.190000e-118 435.0
59 TraesCS2B01G165600 chr2A 87.500 312 35 3 528 838 86063802 86063494 1.820000e-94 357.0
60 TraesCS2B01G165600 chr2A 94.595 222 7 2 4002 4223 86059386 86059170 6.600000e-89 339.0
61 TraesCS2B01G165600 chr2A 78.533 368 58 12 529 884 84206142 84206500 6.940000e-54 222.0
62 TraesCS2B01G165600 chr2A 95.370 108 3 2 3203 3308 85809176 85809069 2.550000e-38 171.0
63 TraesCS2B01G165600 chr2A 95.370 108 3 2 3203 3308 85925083 85924976 2.550000e-38 171.0
64 TraesCS2B01G165600 chr2A 94.393 107 5 1 3203 3308 86060156 86060050 4.260000e-36 163.0
65 TraesCS2B01G165600 chr2A 83.333 162 25 2 3308 3469 84145288 84145447 1.190000e-31 148.0
66 TraesCS2B01G165600 chr2A 91.837 98 8 0 3200 3297 83991994 83992091 2.580000e-28 137.0
67 TraesCS2B01G165600 chr7A 90.040 1978 119 27 1367 3303 618195365 618193425 0.000000e+00 2490.0
68 TraesCS2B01G165600 chr5D 93.675 1660 90 8 1460 3113 283110291 283108641 0.000000e+00 2470.0
69 TraesCS2B01G165600 chr5D 85.895 1262 124 20 1358 2600 230369050 230370276 0.000000e+00 1295.0
70 TraesCS2B01G165600 chr5D 100.000 169 0 0 5154 5322 484013958 484013790 4.000000e-81 313.0
71 TraesCS2B01G165600 chr5A 87.097 1891 151 40 1358 3199 326437953 326436107 0.000000e+00 2054.0
72 TraesCS2B01G165600 chr5A 97.633 169 4 0 5154 5322 663920105 663919937 1.880000e-74 291.0
73 TraesCS2B01G165600 chr5A 82.500 240 36 5 601 837 331858908 331858672 6.990000e-49 206.0
74 TraesCS2B01G165600 chr5B 92.093 1113 75 3 1367 2479 321478256 321477157 0.000000e+00 1555.0
75 TraesCS2B01G165600 chr5B 91.667 528 42 2 4 529 304160750 304160223 0.000000e+00 730.0
76 TraesCS2B01G165600 chr5B 91.115 529 46 1 1 528 583099570 583100098 0.000000e+00 715.0
77 TraesCS2B01G165600 chr5B 97.041 169 4 1 5154 5322 436169198 436169365 3.140000e-72 283.0
78 TraesCS2B01G165600 chr3B 91.477 528 43 2 1 527 121705296 121704770 0.000000e+00 725.0
79 TraesCS2B01G165600 chr3B 100.000 169 0 0 5154 5322 756629275 756629443 4.000000e-81 313.0
80 TraesCS2B01G165600 chr3B 98.817 169 2 0 5154 5322 308399737 308399905 8.660000e-78 302.0
81 TraesCS2B01G165600 chr7B 91.098 528 46 1 1 528 591190886 591190360 0.000000e+00 713.0
82 TraesCS2B01G165600 chr4A 90.311 547 28 15 3679 4223 349803869 349803346 0.000000e+00 693.0
83 TraesCS2B01G165600 chr4A 88.158 380 25 11 3308 3683 349804388 349804025 8.190000e-118 435.0
84 TraesCS2B01G165600 chr4A 95.370 108 3 2 3203 3308 349804711 349804604 2.550000e-38 171.0
85 TraesCS2B01G165600 chr1B 97.633 169 4 0 5154 5322 670560219 670560387 1.880000e-74 291.0
86 TraesCS2B01G165600 chr4D 85.845 219 24 6 624 838 504227926 504227711 5.360000e-55 226.0
87 TraesCS2B01G165600 chr6B 85.340 191 24 3 644 832 710917968 710918156 1.510000e-45 195.0
88 TraesCS2B01G165600 chr6B 85.340 191 24 3 644 832 710945405 710945593 1.510000e-45 195.0
89 TraesCS2B01G165600 chr6B 83.246 191 28 3 644 832 710931725 710931913 7.090000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G165600 chr2B 137810546 137815867 5321 True 9828.000000 9828 100.000000 1 5322 1 chr2B.!!$R2 5321
1 TraesCS2B01G165600 chr2B 135357971 135359682 1711 False 2182.000000 2182 89.803000 1358 3063 1 chr2B.!!$F1 1705
2 TraesCS2B01G165600 chr2B 137345974 137349335 3361 True 1079.000000 2970 95.005750 1367 4176 4 chr2B.!!$R8 2809
3 TraesCS2B01G165600 chr2B 206487484 206491900 4416 False 739.500000 743 92.190500 1 527 2 chr2B.!!$F9 526
4 TraesCS2B01G165600 chr2B 275256305 275256832 527 True 730.000000 730 91.682000 1 527 1 chr2B.!!$R4 526
5 TraesCS2B01G165600 chr2B 148374896 148375422 526 False 723.000000 723 91.461000 2 527 1 chr2B.!!$F5 525
6 TraesCS2B01G165600 chr2B 383077869 383078396 527 True 719.000000 719 91.288000 1 527 1 chr2B.!!$R5 526
7 TraesCS2B01G165600 chr2B 135709389 135710383 994 True 708.000000 708 80.040000 4025 4996 1 chr2B.!!$R1 971
8 TraesCS2B01G165600 chr2B 136625318 136626303 985 False 643.000000 643 78.821000 4020 5001 1 chr2B.!!$F3 981
9 TraesCS2B01G165600 chr2B 136954650 136955290 640 False 492.000000 492 80.680000 4361 5001 1 chr2B.!!$F4 640
10 TraesCS2B01G165600 chr2D 83529905 83531607 1702 False 2150.000000 2150 89.498000 1347 3063 1 chr2D.!!$F1 1716
11 TraesCS2B01G165600 chr2D 84777800 84779058 1258 True 767.000000 1334 85.992500 2189 3632 2 chr2D.!!$R2 1443
12 TraesCS2B01G165600 chr2D 84935375 84936634 1259 True 753.000000 1310 85.705500 2189 3632 2 chr2D.!!$R3 1443
13 TraesCS2B01G165600 chr2D 85683344 85684324 980 False 745.000000 745 80.851000 4022 4980 1 chr2D.!!$F5 958
14 TraesCS2B01G165600 chr2D 83841399 83842378 979 True 721.000000 721 80.525000 4025 4983 1 chr2D.!!$R1 958
15 TraesCS2B01G165600 chr2D 85700866 85704262 3396 True 641.071429 3145 95.256571 843 4223 7 chr2D.!!$R5 3380
16 TraesCS2B01G165600 chr2D 85392127 85393100 973 False 551.000000 551 77.241000 4024 5001 1 chr2D.!!$F4 977
17 TraesCS2B01G165600 chr2D 84766792 84767767 975 False 507.000000 507 76.429000 4020 5001 1 chr2D.!!$F2 981
18 TraesCS2B01G165600 chr2D 84925307 84925888 581 False 472.000000 472 81.431000 4419 5001 1 chr2D.!!$F3 582
19 TraesCS2B01G165600 chr2D 85245895 85249150 3255 True 339.157143 1456 96.327429 3203 5156 7 chr2D.!!$R4 1953
20 TraesCS2B01G165600 chr2A 84227927 84230109 2182 False 2771.000000 2771 89.418000 923 3191 1 chr2A.!!$F4 2268
21 TraesCS2B01G165600 chr2A 83984967 83986776 1809 False 2326.000000 2326 90.055000 1344 3137 1 chr2A.!!$F1 1793
22 TraesCS2B01G165600 chr2A 84143625 84145447 1822 False 1260.000000 2372 86.744500 1347 3469 2 chr2A.!!$F5 2122
23 TraesCS2B01G165600 chr2A 86059170 86063802 4632 True 888.200000 3068 91.923800 528 4223 5 chr2A.!!$R4 3695
24 TraesCS2B01G165600 chr2A 84608571 84609562 991 True 678.000000 678 79.541000 4025 4996 1 chr2A.!!$R1 971
25 TraesCS2B01G165600 chr2A 85807811 85809176 1365 True 429.333333 682 91.157667 3203 4223 3 chr2A.!!$R2 1020
26 TraesCS2B01G165600 chr2A 85923717 85925083 1366 True 424.333333 667 90.981333 3203 4223 3 chr2A.!!$R3 1020
27 TraesCS2B01G165600 chr7A 618193425 618195365 1940 True 2490.000000 2490 90.040000 1367 3303 1 chr7A.!!$R1 1936
28 TraesCS2B01G165600 chr5D 283108641 283110291 1650 True 2470.000000 2470 93.675000 1460 3113 1 chr5D.!!$R1 1653
29 TraesCS2B01G165600 chr5D 230369050 230370276 1226 False 1295.000000 1295 85.895000 1358 2600 1 chr5D.!!$F1 1242
30 TraesCS2B01G165600 chr5A 326436107 326437953 1846 True 2054.000000 2054 87.097000 1358 3199 1 chr5A.!!$R1 1841
31 TraesCS2B01G165600 chr5B 321477157 321478256 1099 True 1555.000000 1555 92.093000 1367 2479 1 chr5B.!!$R2 1112
32 TraesCS2B01G165600 chr5B 304160223 304160750 527 True 730.000000 730 91.667000 4 529 1 chr5B.!!$R1 525
33 TraesCS2B01G165600 chr5B 583099570 583100098 528 False 715.000000 715 91.115000 1 528 1 chr5B.!!$F2 527
34 TraesCS2B01G165600 chr3B 121704770 121705296 526 True 725.000000 725 91.477000 1 527 1 chr3B.!!$R1 526
35 TraesCS2B01G165600 chr7B 591190360 591190886 526 True 713.000000 713 91.098000 1 528 1 chr7B.!!$R1 527
36 TraesCS2B01G165600 chr4A 349803346 349804711 1365 True 433.000000 693 91.279667 3203 4223 3 chr4A.!!$R1 1020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 5904 0.109342 ACCAGTTGCAACTCCAGAGG 59.891 55.0 28.97 26.16 37.08 3.69 F
1011 5922 0.033504 GGCAACTTCAGAGACACCGA 59.966 55.0 0.00 0.00 0.00 4.69 F
2012 6968 0.178068 GCCTTCCGTGCCTCTGATAA 59.822 55.0 0.00 0.00 0.00 1.75 F
3117 8212 2.237393 TGTTGGCCTGAATTTTGCAC 57.763 45.0 3.32 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 6956 0.530870 GGAGGCGTTATCAGAGGCAC 60.531 60.0 0.0 0.0 32.33 5.01 R
2108 7064 0.534412 CTCGTCTTCAGCCATCTGGT 59.466 55.0 0.0 0.0 40.69 4.00 R
3194 8289 0.534873 TCGCCACTCAAATGATCCGA 59.465 50.0 0.0 0.0 0.00 4.55 R
4452 10380 0.823356 TGCTTCACAAACCCTGCTCC 60.823 55.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 0.759436 AACCGGCAGATCTCGGGTAT 60.759 55.000 22.66 9.21 45.54 2.73
272 4174 6.770785 CCCTAGATGTCTAGCCTATGAGTATC 59.229 46.154 10.84 0.00 43.47 2.24
295 4197 4.572389 CCCAATGACGGTGAAGAAGATAAG 59.428 45.833 0.00 0.00 0.00 1.73
300 4202 4.109050 GACGGTGAAGAAGATAAGCTCTG 58.891 47.826 0.00 0.00 33.29 3.35
302 4204 3.677148 CGGTGAAGAAGATAAGCTCTGCA 60.677 47.826 0.00 0.00 30.90 4.41
306 4208 3.817709 AGAAGATAAGCTCTGCAGACC 57.182 47.619 13.74 6.62 30.90 3.85
332 4236 9.139734 CAACCCCTCTAGTTTATATACACACTA 57.860 37.037 2.04 0.09 0.00 2.74
483 4387 1.134098 CATCCAACTCGGCCCATACTT 60.134 52.381 0.00 0.00 33.14 2.24
497 4401 1.825474 CATACTTCTGGGTCGGACACT 59.175 52.381 12.28 0.00 0.00 3.55
600 4505 4.101448 CAGGGTGAGCGGGGGAAG 62.101 72.222 0.00 0.00 0.00 3.46
619 4524 3.439440 GGGGGTTGGCTATCCATTC 57.561 57.895 0.00 0.00 43.05 2.67
623 4528 1.215423 GGGTTGGCTATCCATTCTGGT 59.785 52.381 0.00 0.00 43.05 4.00
630 4535 0.673985 TATCCATTCTGGTCGGCTCG 59.326 55.000 0.00 0.00 39.03 5.03
631 4536 2.032860 ATCCATTCTGGTCGGCTCGG 62.033 60.000 0.00 0.00 39.03 4.63
639 4544 2.722201 GGTCGGCTCGGAGGTCATT 61.722 63.158 7.20 0.00 0.00 2.57
648 4553 2.264794 GAGGTCATTGACGGCGGT 59.735 61.111 13.24 0.00 32.65 5.68
649 4554 1.514087 GAGGTCATTGACGGCGGTA 59.486 57.895 13.24 0.00 32.65 4.02
701 4606 3.556423 GGGCAAGAGGAAGTTTTACTCGA 60.556 47.826 0.00 0.00 36.40 4.04
702 4607 3.432592 GGCAAGAGGAAGTTTTACTCGAC 59.567 47.826 0.00 0.00 36.40 4.20
707 4612 0.712222 GAAGTTTTACTCGACCGCCG 59.288 55.000 0.00 0.00 40.25 6.46
710 4615 2.023223 TTTTACTCGACCGCCGCAC 61.023 57.895 0.00 0.00 38.37 5.34
726 4631 3.060473 GCCGCACGATGAAGTAGATTTAC 60.060 47.826 0.00 0.00 0.00 2.01
755 4660 5.342017 TCTTGGGAGGAATAGAGTTGAAGA 58.658 41.667 0.00 0.00 0.00 2.87
801 4706 0.538977 TAGGGGATCGGCTAGGTTCG 60.539 60.000 0.00 0.00 0.00 3.95
803 4708 2.029221 GGATCGGCTAGGTTCGCC 59.971 66.667 0.00 0.00 44.11 5.54
809 4714 1.811860 GGCTAGGTTCGCCGTAAGA 59.188 57.895 0.00 0.00 43.66 2.10
814 4719 2.119801 AGGTTCGCCGTAAGAGAGTA 57.880 50.000 0.00 0.00 43.66 2.59
819 4724 2.161855 TCGCCGTAAGAGAGTAAACCA 58.838 47.619 0.00 0.00 43.02 3.67
902 5761 9.979578 AAATGTATTGTTTTAGATTGTGAAGCA 57.020 25.926 0.00 0.00 0.00 3.91
903 5762 9.630098 AATGTATTGTTTTAGATTGTGAAGCAG 57.370 29.630 0.00 0.00 0.00 4.24
904 5763 8.165239 TGTATTGTTTTAGATTGTGAAGCAGT 57.835 30.769 0.00 0.00 0.00 4.40
907 5766 6.882610 TGTTTTAGATTGTGAAGCAGTGAT 57.117 33.333 0.00 0.00 0.00 3.06
909 5768 6.072508 TGTTTTAGATTGTGAAGCAGTGATCC 60.073 38.462 0.00 0.00 0.00 3.36
911 5770 6.544928 TTAGATTGTGAAGCAGTGATCCTA 57.455 37.500 0.00 0.00 0.00 2.94
912 5771 5.426689 AGATTGTGAAGCAGTGATCCTAA 57.573 39.130 0.00 0.00 0.00 2.69
913 5772 5.809001 AGATTGTGAAGCAGTGATCCTAAA 58.191 37.500 0.00 0.00 0.00 1.85
914 5773 6.240894 AGATTGTGAAGCAGTGATCCTAAAA 58.759 36.000 0.00 0.00 0.00 1.52
915 5774 6.716628 AGATTGTGAAGCAGTGATCCTAAAAA 59.283 34.615 0.00 0.00 0.00 1.94
987 5898 2.288666 TCACTGAACCAGTTGCAACTC 58.711 47.619 28.97 18.09 42.59 3.01
993 5904 0.109342 ACCAGTTGCAACTCCAGAGG 59.891 55.000 28.97 26.16 37.08 3.69
994 5905 1.239968 CCAGTTGCAACTCCAGAGGC 61.240 60.000 28.97 0.00 37.08 4.70
995 5906 0.535780 CAGTTGCAACTCCAGAGGCA 60.536 55.000 28.97 0.00 37.08 4.75
996 5907 0.183492 AGTTGCAACTCCAGAGGCAA 59.817 50.000 26.36 7.10 43.32 4.52
997 5908 2.719376 TTGCAACTCCAGAGGCAAC 58.281 52.632 0.00 0.00 40.94 4.17
1010 5921 2.533318 GGCAACTTCAGAGACACCG 58.467 57.895 0.00 0.00 0.00 4.94
1011 5922 0.033504 GGCAACTTCAGAGACACCGA 59.966 55.000 0.00 0.00 0.00 4.69
1018 5929 0.820482 TCAGAGACACCGAACACCGA 60.820 55.000 0.00 0.00 41.76 4.69
1530 6480 0.933097 CAGATCCAATCCAAGACGCG 59.067 55.000 3.53 3.53 0.00 6.01
1531 6481 0.179073 AGATCCAATCCAAGACGCGG 60.179 55.000 12.47 0.00 0.00 6.46
1532 6482 0.462047 GATCCAATCCAAGACGCGGT 60.462 55.000 12.47 0.00 0.00 5.68
2012 6968 0.178068 GCCTTCCGTGCCTCTGATAA 59.822 55.000 0.00 0.00 0.00 1.75
2108 7064 2.680707 TATCCGTGCCCGTGGACA 60.681 61.111 0.00 0.00 37.02 4.02
3117 8212 2.237393 TGTTGGCCTGAATTTTGCAC 57.763 45.000 3.32 0.00 0.00 4.57
3198 8293 1.406898 CATTCTGCTGCTCTAGTCGGA 59.593 52.381 0.00 0.00 0.00 4.55
3201 8333 1.028130 CTGCTGCTCTAGTCGGATCA 58.972 55.000 0.00 0.00 0.00 2.92
3211 8343 2.029838 AGTCGGATCATTTGAGTGGC 57.970 50.000 0.00 0.00 0.00 5.01
3291 8426 9.757227 AGATACAGCAATCTAATAGTCAAGAAC 57.243 33.333 0.00 0.00 34.40 3.01
3320 8853 1.553308 GTGGCATACCGAGTAACGAC 58.447 55.000 0.00 0.00 45.77 4.34
3404 8937 9.944376 AGAGCATTTGAGTAACTTTCTGTATAA 57.056 29.630 0.00 0.00 0.00 0.98
3443 8976 4.245660 TCTATGGCTTCTTGAAACACTCG 58.754 43.478 0.00 0.00 0.00 4.18
3467 9000 5.239525 GGTTGCTCTATTCAGAAAAGTGTGT 59.760 40.000 0.00 0.00 0.00 3.72
3548 9096 6.861065 TTGGTTTAAGAAACTGCAGTCTAG 57.139 37.500 21.95 0.00 41.14 2.43
3564 9112 5.119898 GCAGTCTAGTTGTCAAGAATGTGAG 59.880 44.000 3.24 0.00 39.40 3.51
3572 9120 6.378280 AGTTGTCAAGAATGTGAGAAAGGTTT 59.622 34.615 0.00 0.00 33.09 3.27
3577 9125 5.796424 AGAATGTGAGAAAGGTTTGCATT 57.204 34.783 0.00 0.00 0.00 3.56
3578 9126 6.899393 AGAATGTGAGAAAGGTTTGCATTA 57.101 33.333 0.00 0.00 0.00 1.90
3654 9219 4.142359 ACTGTAGTCTTACATTCTCAGGCG 60.142 45.833 0.00 0.00 39.00 5.52
3723 9486 4.514441 CAGCAGCAGGATCCTATGTTAAAG 59.486 45.833 15.67 0.00 0.00 1.85
3724 9487 3.251972 GCAGCAGGATCCTATGTTAAAGC 59.748 47.826 15.67 11.19 0.00 3.51
3725 9488 3.817647 CAGCAGGATCCTATGTTAAAGCC 59.182 47.826 15.67 0.00 0.00 4.35
3726 9489 3.718956 AGCAGGATCCTATGTTAAAGCCT 59.281 43.478 15.67 0.00 0.00 4.58
4058 9951 8.875168 AGAGTTTGCATAGGATAGCTTAAGTAT 58.125 33.333 4.02 1.21 0.00 2.12
4079 9976 7.763356 AGTATAGAACGGCTAATGCATACTAG 58.237 38.462 0.00 0.00 41.91 2.57
4291 10189 3.423539 CCAGTCTTTTGTCTGGGATCA 57.576 47.619 0.00 0.00 47.00 2.92
4452 10380 2.030457 GCGACAGACCGTAATGAAATGG 59.970 50.000 0.00 0.00 0.00 3.16
4530 10458 1.226603 CGCGGTCCCTTTAGACTCG 60.227 63.158 0.00 0.00 36.95 4.18
4684 10612 3.245518 TCTCGGATTTCTGCATTTCGA 57.754 42.857 0.00 0.00 0.00 3.71
4685 10613 3.797039 TCTCGGATTTCTGCATTTCGAT 58.203 40.909 0.00 0.00 0.00 3.59
4693 10621 3.409851 TCTGCATTTCGATGTTCATGC 57.590 42.857 0.00 0.00 42.07 4.06
4694 10622 3.011818 TCTGCATTTCGATGTTCATGCT 58.988 40.909 12.42 0.00 42.20 3.79
4696 10624 4.818005 TCTGCATTTCGATGTTCATGCTAT 59.182 37.500 12.42 0.00 42.20 2.97
4779 10707 7.531716 CACTTGTGTTTTTAAAGTACTCCACA 58.468 34.615 0.00 0.00 32.96 4.17
4804 10732 1.879796 GCAGGAAAGTCACCTCCACTG 60.880 57.143 0.00 0.00 35.35 3.66
4921 10849 4.558226 TTTCTACCATGCATCAGTGACT 57.442 40.909 0.00 0.00 0.00 3.41
5001 10929 5.452078 TTCCATTTGCACGATCTTTCTTT 57.548 34.783 0.00 0.00 0.00 2.52
5150 12064 2.392821 GCACATGTCACGCAATTGAAA 58.607 42.857 10.34 0.00 0.00 2.69
5156 12070 4.827304 TGTCACGCAATTGAAATCTTCA 57.173 36.364 10.34 0.00 38.04 3.02
5157 12071 4.536065 TGTCACGCAATTGAAATCTTCAC 58.464 39.130 10.34 0.00 39.87 3.18
5158 12072 3.599514 GTCACGCAATTGAAATCTTCACG 59.400 43.478 10.34 2.12 39.87 4.35
5159 12073 2.910482 CACGCAATTGAAATCTTCACGG 59.090 45.455 10.34 0.00 39.87 4.94
5160 12074 2.095263 ACGCAATTGAAATCTTCACGGG 60.095 45.455 10.34 0.00 39.87 5.28
5161 12075 2.262211 GCAATTGAAATCTTCACGGGC 58.738 47.619 10.34 0.00 39.87 6.13
5162 12076 2.879826 CAATTGAAATCTTCACGGGCC 58.120 47.619 0.00 0.00 39.87 5.80
5163 12077 2.493278 CAATTGAAATCTTCACGGGCCT 59.507 45.455 0.84 0.00 39.87 5.19
5164 12078 3.644966 ATTGAAATCTTCACGGGCCTA 57.355 42.857 0.84 0.00 39.87 3.93
5165 12079 3.644966 TTGAAATCTTCACGGGCCTAT 57.355 42.857 0.84 0.00 39.87 2.57
5166 12080 3.644966 TGAAATCTTCACGGGCCTATT 57.355 42.857 0.84 0.00 34.08 1.73
5167 12081 3.541632 TGAAATCTTCACGGGCCTATTC 58.458 45.455 0.84 0.00 34.08 1.75
5168 12082 3.199946 TGAAATCTTCACGGGCCTATTCT 59.800 43.478 0.84 0.00 34.08 2.40
5169 12083 3.933861 AATCTTCACGGGCCTATTCTT 57.066 42.857 0.84 0.00 0.00 2.52
5170 12084 2.981859 TCTTCACGGGCCTATTCTTC 57.018 50.000 0.84 0.00 0.00 2.87
5171 12085 2.184533 TCTTCACGGGCCTATTCTTCA 58.815 47.619 0.84 0.00 0.00 3.02
5172 12086 2.569853 TCTTCACGGGCCTATTCTTCAA 59.430 45.455 0.84 0.00 0.00 2.69
5173 12087 3.008594 TCTTCACGGGCCTATTCTTCAAA 59.991 43.478 0.84 0.00 0.00 2.69
5174 12088 3.426787 TCACGGGCCTATTCTTCAAAA 57.573 42.857 0.84 0.00 0.00 2.44
5175 12089 3.757270 TCACGGGCCTATTCTTCAAAAA 58.243 40.909 0.84 0.00 0.00 1.94
5176 12090 3.756434 TCACGGGCCTATTCTTCAAAAAG 59.244 43.478 0.84 0.00 0.00 2.27
5177 12091 3.506067 CACGGGCCTATTCTTCAAAAAGT 59.494 43.478 0.84 0.00 33.95 2.66
5178 12092 3.506067 ACGGGCCTATTCTTCAAAAAGTG 59.494 43.478 0.84 0.00 33.95 3.16
5179 12093 3.506067 CGGGCCTATTCTTCAAAAAGTGT 59.494 43.478 0.84 0.00 33.95 3.55
5180 12094 4.022329 CGGGCCTATTCTTCAAAAAGTGTT 60.022 41.667 0.84 0.00 33.95 3.32
5181 12095 5.230182 GGGCCTATTCTTCAAAAAGTGTTG 58.770 41.667 0.84 0.00 33.95 3.33
5182 12096 5.230182 GGCCTATTCTTCAAAAAGTGTTGG 58.770 41.667 0.00 0.00 33.95 3.77
5183 12097 5.230182 GCCTATTCTTCAAAAAGTGTTGGG 58.770 41.667 0.00 0.00 33.95 4.12
5184 12098 5.783111 CCTATTCTTCAAAAAGTGTTGGGG 58.217 41.667 0.00 0.00 33.95 4.96
5185 12099 3.535280 TTCTTCAAAAAGTGTTGGGGC 57.465 42.857 0.00 0.00 33.95 5.80
5186 12100 2.461695 TCTTCAAAAAGTGTTGGGGCA 58.538 42.857 0.00 0.00 33.95 5.36
5187 12101 2.167487 TCTTCAAAAAGTGTTGGGGCAC 59.833 45.455 0.00 0.00 39.51 5.01
5192 12106 3.330192 AGTGTTGGGGCACTGTCA 58.670 55.556 0.00 0.00 46.72 3.58
5193 12107 1.612513 AGTGTTGGGGCACTGTCAA 59.387 52.632 0.00 0.00 46.72 3.18
5194 12108 0.466189 AGTGTTGGGGCACTGTCAAG 60.466 55.000 0.00 0.00 46.72 3.02
5195 12109 1.827789 TGTTGGGGCACTGTCAAGC 60.828 57.895 0.00 0.00 0.00 4.01
5196 12110 1.827789 GTTGGGGCACTGTCAAGCA 60.828 57.895 0.00 0.00 0.00 3.91
5197 12111 1.827789 TTGGGGCACTGTCAAGCAC 60.828 57.895 0.00 0.00 0.00 4.40
5198 12112 3.357079 GGGGCACTGTCAAGCACG 61.357 66.667 0.00 0.00 34.20 5.34
5199 12113 2.280797 GGGCACTGTCAAGCACGA 60.281 61.111 0.00 0.00 0.00 4.35
5200 12114 2.607892 GGGCACTGTCAAGCACGAC 61.608 63.158 0.00 0.00 36.40 4.34
5201 12115 2.607892 GGCACTGTCAAGCACGACC 61.608 63.158 0.00 0.00 34.88 4.79
5202 12116 1.595382 GCACTGTCAAGCACGACCT 60.595 57.895 0.00 0.00 34.88 3.85
5203 12117 1.560860 GCACTGTCAAGCACGACCTC 61.561 60.000 0.00 0.00 34.88 3.85
5204 12118 0.249447 CACTGTCAAGCACGACCTCA 60.249 55.000 0.00 0.00 34.88 3.86
5205 12119 0.681733 ACTGTCAAGCACGACCTCAT 59.318 50.000 0.00 0.00 34.88 2.90
5206 12120 1.073964 CTGTCAAGCACGACCTCATG 58.926 55.000 0.00 0.00 34.88 3.07
5207 12121 0.678950 TGTCAAGCACGACCTCATGA 59.321 50.000 0.00 0.00 34.88 3.07
5208 12122 1.337167 TGTCAAGCACGACCTCATGAG 60.337 52.381 16.24 16.24 34.88 2.90
5217 12131 3.851955 CCTCATGAGGGCCATTGC 58.148 61.111 31.14 0.00 44.87 3.56
5218 12132 1.229359 CCTCATGAGGGCCATTGCT 59.771 57.895 31.14 0.00 44.87 3.91
5219 12133 0.822532 CCTCATGAGGGCCATTGCTC 60.823 60.000 31.14 1.80 44.87 4.26
5220 12134 1.153107 TCATGAGGGCCATTGCTCG 60.153 57.895 6.18 0.00 45.20 5.03
5221 12135 1.452651 CATGAGGGCCATTGCTCGT 60.453 57.895 6.18 0.00 45.20 4.18
5222 12136 1.033746 CATGAGGGCCATTGCTCGTT 61.034 55.000 6.18 0.00 45.20 3.85
5223 12137 0.323725 ATGAGGGCCATTGCTCGTTT 60.324 50.000 6.18 0.00 45.20 3.60
5224 12138 0.960364 TGAGGGCCATTGCTCGTTTC 60.960 55.000 6.18 0.00 45.20 2.78
5225 12139 1.982073 GAGGGCCATTGCTCGTTTCG 61.982 60.000 6.18 0.00 45.20 3.46
5226 12140 2.038269 GGGCCATTGCTCGTTTCGA 61.038 57.895 4.39 0.00 37.74 3.71
5227 12141 1.134694 GGCCATTGCTCGTTTCGAC 59.865 57.895 0.00 0.00 37.74 4.20
5228 12142 1.298859 GGCCATTGCTCGTTTCGACT 61.299 55.000 0.00 0.00 37.74 4.18
5229 12143 0.095417 GCCATTGCTCGTTTCGACTC 59.905 55.000 0.00 0.00 33.53 3.36
5230 12144 0.721718 CCATTGCTCGTTTCGACTCC 59.278 55.000 0.00 0.00 0.00 3.85
5231 12145 0.721718 CATTGCTCGTTTCGACTCCC 59.278 55.000 0.00 0.00 0.00 4.30
5232 12146 0.608640 ATTGCTCGTTTCGACTCCCT 59.391 50.000 0.00 0.00 0.00 4.20
5233 12147 0.038526 TTGCTCGTTTCGACTCCCTC 60.039 55.000 0.00 0.00 0.00 4.30
5234 12148 1.153804 GCTCGTTTCGACTCCCTCC 60.154 63.158 0.00 0.00 0.00 4.30
5235 12149 1.874345 GCTCGTTTCGACTCCCTCCA 61.874 60.000 0.00 0.00 0.00 3.86
5236 12150 0.109226 CTCGTTTCGACTCCCTCCAC 60.109 60.000 0.00 0.00 0.00 4.02
5237 12151 0.824595 TCGTTTCGACTCCCTCCACA 60.825 55.000 0.00 0.00 0.00 4.17
5238 12152 0.666577 CGTTTCGACTCCCTCCACAC 60.667 60.000 0.00 0.00 0.00 3.82
5239 12153 0.680061 GTTTCGACTCCCTCCACACT 59.320 55.000 0.00 0.00 0.00 3.55
5240 12154 1.070289 GTTTCGACTCCCTCCACACTT 59.930 52.381 0.00 0.00 0.00 3.16
5241 12155 0.966920 TTCGACTCCCTCCACACTTC 59.033 55.000 0.00 0.00 0.00 3.01
5242 12156 1.213013 CGACTCCCTCCACACTTCG 59.787 63.158 0.00 0.00 0.00 3.79
5243 12157 1.241990 CGACTCCCTCCACACTTCGA 61.242 60.000 0.00 0.00 0.00 3.71
5244 12158 0.966920 GACTCCCTCCACACTTCGAA 59.033 55.000 0.00 0.00 0.00 3.71
5245 12159 0.680061 ACTCCCTCCACACTTCGAAC 59.320 55.000 0.00 0.00 0.00 3.95
5246 12160 0.037232 CTCCCTCCACACTTCGAACC 60.037 60.000 0.00 0.00 0.00 3.62
5247 12161 0.471211 TCCCTCCACACTTCGAACCT 60.471 55.000 0.00 0.00 0.00 3.50
5248 12162 0.037232 CCCTCCACACTTCGAACCTC 60.037 60.000 0.00 0.00 0.00 3.85
5249 12163 0.037232 CCTCCACACTTCGAACCTCC 60.037 60.000 0.00 0.00 0.00 4.30
5250 12164 0.679505 CTCCACACTTCGAACCTCCA 59.320 55.000 0.00 0.00 0.00 3.86
5251 12165 0.391597 TCCACACTTCGAACCTCCAC 59.608 55.000 0.00 0.00 0.00 4.02
5252 12166 0.393077 CCACACTTCGAACCTCCACT 59.607 55.000 0.00 0.00 0.00 4.00
5253 12167 1.502231 CACACTTCGAACCTCCACTG 58.498 55.000 0.00 0.00 0.00 3.66
5254 12168 0.393077 ACACTTCGAACCTCCACTGG 59.607 55.000 0.00 0.00 0.00 4.00
5255 12169 0.951040 CACTTCGAACCTCCACTGGC 60.951 60.000 0.00 0.00 0.00 4.85
5256 12170 1.122019 ACTTCGAACCTCCACTGGCT 61.122 55.000 0.00 0.00 0.00 4.75
5257 12171 0.390472 CTTCGAACCTCCACTGGCTC 60.390 60.000 0.00 0.00 0.00 4.70
5258 12172 1.118965 TTCGAACCTCCACTGGCTCA 61.119 55.000 0.00 0.00 0.00 4.26
5259 12173 1.118965 TCGAACCTCCACTGGCTCAA 61.119 55.000 0.00 0.00 0.00 3.02
5260 12174 0.951040 CGAACCTCCACTGGCTCAAC 60.951 60.000 0.00 0.00 0.00 3.18
5261 12175 0.398318 GAACCTCCACTGGCTCAACT 59.602 55.000 0.00 0.00 0.00 3.16
5262 12176 0.398318 AACCTCCACTGGCTCAACTC 59.602 55.000 0.00 0.00 0.00 3.01
5263 12177 0.472734 ACCTCCACTGGCTCAACTCT 60.473 55.000 0.00 0.00 0.00 3.24
5264 12178 0.036577 CCTCCACTGGCTCAACTCTG 60.037 60.000 0.00 0.00 0.00 3.35
5265 12179 0.673022 CTCCACTGGCTCAACTCTGC 60.673 60.000 0.00 0.00 0.00 4.26
5266 12180 2.031516 CCACTGGCTCAACTCTGCG 61.032 63.158 0.00 0.00 0.00 5.18
5267 12181 1.005748 CACTGGCTCAACTCTGCGA 60.006 57.895 0.00 0.00 0.00 5.10
5268 12182 0.601046 CACTGGCTCAACTCTGCGAA 60.601 55.000 0.00 0.00 0.00 4.70
5269 12183 0.322975 ACTGGCTCAACTCTGCGAAT 59.677 50.000 0.00 0.00 0.00 3.34
5270 12184 0.725686 CTGGCTCAACTCTGCGAATG 59.274 55.000 0.00 0.00 0.00 2.67
5271 12185 0.035317 TGGCTCAACTCTGCGAATGT 59.965 50.000 0.00 0.00 0.00 2.71
5272 12186 0.445436 GGCTCAACTCTGCGAATGTG 59.555 55.000 0.00 0.00 0.00 3.21
5273 12187 0.445436 GCTCAACTCTGCGAATGTGG 59.555 55.000 0.00 0.00 0.00 4.17
5274 12188 1.800805 CTCAACTCTGCGAATGTGGT 58.199 50.000 0.00 0.00 0.00 4.16
5275 12189 1.462283 CTCAACTCTGCGAATGTGGTG 59.538 52.381 0.00 0.00 0.00 4.17
5276 12190 0.110056 CAACTCTGCGAATGTGGTGC 60.110 55.000 0.00 0.00 0.00 5.01
5277 12191 0.250467 AACTCTGCGAATGTGGTGCT 60.250 50.000 0.00 0.00 0.00 4.40
5278 12192 0.671781 ACTCTGCGAATGTGGTGCTC 60.672 55.000 0.00 0.00 0.00 4.26
5279 12193 0.390866 CTCTGCGAATGTGGTGCTCT 60.391 55.000 0.00 0.00 0.00 4.09
5280 12194 0.035317 TCTGCGAATGTGGTGCTCTT 59.965 50.000 0.00 0.00 0.00 2.85
5281 12195 0.167470 CTGCGAATGTGGTGCTCTTG 59.833 55.000 0.00 0.00 0.00 3.02
5282 12196 1.154150 GCGAATGTGGTGCTCTTGC 60.154 57.895 0.00 0.00 40.20 4.01
5283 12197 1.503542 CGAATGTGGTGCTCTTGCC 59.496 57.895 0.00 0.00 38.71 4.52
5284 12198 1.236616 CGAATGTGGTGCTCTTGCCA 61.237 55.000 0.00 0.00 38.71 4.92
5285 12199 0.961019 GAATGTGGTGCTCTTGCCAA 59.039 50.000 0.00 0.00 36.41 4.52
5286 12200 1.340889 GAATGTGGTGCTCTTGCCAAA 59.659 47.619 0.00 0.00 36.41 3.28
5287 12201 1.412079 ATGTGGTGCTCTTGCCAAAA 58.588 45.000 0.00 0.00 36.41 2.44
5288 12202 1.189752 TGTGGTGCTCTTGCCAAAAA 58.810 45.000 0.00 0.00 36.41 1.94
5303 12217 3.697799 AAAAAGGATGGGGCAGAGG 57.302 52.632 0.00 0.00 0.00 3.69
5304 12218 0.041684 AAAAAGGATGGGGCAGAGGG 59.958 55.000 0.00 0.00 0.00 4.30
5305 12219 1.878799 AAAAGGATGGGGCAGAGGGG 61.879 60.000 0.00 0.00 0.00 4.79
5306 12220 2.805827 AAAGGATGGGGCAGAGGGGA 62.806 60.000 0.00 0.00 0.00 4.81
5307 12221 2.451294 GGATGGGGCAGAGGGGAT 60.451 66.667 0.00 0.00 0.00 3.85
5308 12222 2.087461 GGATGGGGCAGAGGGGATT 61.087 63.158 0.00 0.00 0.00 3.01
5309 12223 1.152368 GATGGGGCAGAGGGGATTG 59.848 63.158 0.00 0.00 0.00 2.67
5310 12224 2.990994 GATGGGGCAGAGGGGATTGC 62.991 65.000 0.00 0.00 39.56 3.56
5311 12225 3.743017 GGGGCAGAGGGGATTGCA 61.743 66.667 0.00 0.00 42.02 4.08
5312 12226 2.123982 GGGCAGAGGGGATTGCAG 60.124 66.667 0.00 0.00 42.02 4.41
5313 12227 2.683465 GGGCAGAGGGGATTGCAGA 61.683 63.158 0.00 0.00 42.02 4.26
5314 12228 1.452833 GGCAGAGGGGATTGCAGAC 60.453 63.158 0.00 0.00 42.02 3.51
5315 12229 1.606531 GCAGAGGGGATTGCAGACT 59.393 57.895 0.00 0.00 40.02 3.24
5316 12230 0.833287 GCAGAGGGGATTGCAGACTA 59.167 55.000 0.00 0.00 40.02 2.59
5317 12231 1.419387 GCAGAGGGGATTGCAGACTAT 59.581 52.381 0.00 0.00 40.02 2.12
5318 12232 2.634940 GCAGAGGGGATTGCAGACTATA 59.365 50.000 0.00 0.00 40.02 1.31
5319 12233 3.306641 GCAGAGGGGATTGCAGACTATAG 60.307 52.174 0.00 0.00 40.02 1.31
5320 12234 3.260380 CAGAGGGGATTGCAGACTATAGG 59.740 52.174 4.43 0.00 0.00 2.57
5321 12235 1.981495 AGGGGATTGCAGACTATAGGC 59.019 52.381 4.43 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 4174 2.472695 TCTTCTTCACCGTCATTGGG 57.527 50.000 0.00 0.00 0.00 4.12
295 4197 2.360475 GGGGTTGGTCTGCAGAGC 60.360 66.667 33.67 33.67 42.48 4.09
300 4202 0.984995 AACTAGAGGGGTTGGTCTGC 59.015 55.000 0.00 0.00 0.00 4.26
302 4204 7.289549 GTGTATATAAACTAGAGGGGTTGGTCT 59.710 40.741 0.00 0.00 0.00 3.85
306 4208 8.019656 AGTGTGTATATAAACTAGAGGGGTTG 57.980 38.462 4.68 0.00 0.00 3.77
332 4236 0.420272 TACAAACCCTAGGCCCCTCT 59.580 55.000 2.05 0.00 0.00 3.69
483 4387 1.185618 CCTCAAGTGTCCGACCCAGA 61.186 60.000 0.00 0.00 0.00 3.86
497 4401 1.229690 TGGATTCGGGGGTCCTCAA 60.230 57.895 0.00 0.00 35.49 3.02
559 4464 2.663852 ACCGGCACCGACTTTTCG 60.664 61.111 11.42 0.00 45.44 3.46
619 4524 3.827898 GACCTCCGAGCCGACCAG 61.828 72.222 0.00 0.00 0.00 4.00
623 4528 1.680989 TCAATGACCTCCGAGCCGA 60.681 57.895 0.00 0.00 0.00 5.54
630 4535 1.952102 TACCGCCGTCAATGACCTCC 61.952 60.000 7.91 0.00 0.00 4.30
631 4536 0.527817 CTACCGCCGTCAATGACCTC 60.528 60.000 7.91 0.00 0.00 3.85
677 4582 4.004314 GAGTAAAACTTCCTCTTGCCCTC 58.996 47.826 0.00 0.00 0.00 4.30
680 4585 3.432592 GTCGAGTAAAACTTCCTCTTGCC 59.567 47.826 0.00 0.00 0.00 4.52
683 4588 3.860002 GCGGTCGAGTAAAACTTCCTCTT 60.860 47.826 0.00 0.00 0.00 2.85
689 4594 1.287041 GCGGCGGTCGAGTAAAACTT 61.287 55.000 6.02 0.00 42.43 2.66
701 4606 2.884087 CTACTTCATCGTGCGGCGGT 62.884 60.000 9.78 0.00 41.72 5.68
702 4607 2.202690 TACTTCATCGTGCGGCGG 60.203 61.111 9.78 0.00 41.72 6.13
707 4612 4.357142 TCCGTAAATCTACTTCATCGTGC 58.643 43.478 0.00 0.00 0.00 5.34
726 4631 4.101741 ACTCTATTCCTCCCAAGATTTCCG 59.898 45.833 0.00 0.00 0.00 4.30
769 4674 5.508994 GCCGATCCCCTAAAAACATTAATGG 60.509 44.000 19.37 0.00 0.00 3.16
801 4706 5.678132 TTTTTGGTTTACTCTCTTACGGC 57.322 39.130 0.00 0.00 0.00 5.68
824 4729 5.315914 AGGGCATACCATCATAAGGGTAAAT 59.684 40.000 0.00 0.00 44.48 1.40
829 4734 4.567747 GGTTAGGGCATACCATCATAAGGG 60.568 50.000 0.00 0.00 43.89 3.95
839 4744 3.306472 TTTGGATGGTTAGGGCATACC 57.694 47.619 0.00 0.00 40.67 2.73
841 4746 5.538433 GCTTATTTTGGATGGTTAGGGCATA 59.462 40.000 0.00 0.00 0.00 3.14
912 5771 7.330262 TCCTGCTTCACAATCTTTTTCTTTTT 58.670 30.769 0.00 0.00 0.00 1.94
913 5772 6.877236 TCCTGCTTCACAATCTTTTTCTTTT 58.123 32.000 0.00 0.00 0.00 2.27
914 5773 6.322201 TCTCCTGCTTCACAATCTTTTTCTTT 59.678 34.615 0.00 0.00 0.00 2.52
915 5774 5.829924 TCTCCTGCTTCACAATCTTTTTCTT 59.170 36.000 0.00 0.00 0.00 2.52
916 5775 5.240403 GTCTCCTGCTTCACAATCTTTTTCT 59.760 40.000 0.00 0.00 0.00 2.52
917 5776 5.456265 GTCTCCTGCTTCACAATCTTTTTC 58.544 41.667 0.00 0.00 0.00 2.29
919 5778 3.823304 GGTCTCCTGCTTCACAATCTTTT 59.177 43.478 0.00 0.00 0.00 2.27
920 5779 3.181440 TGGTCTCCTGCTTCACAATCTTT 60.181 43.478 0.00 0.00 0.00 2.52
921 5780 2.373169 TGGTCTCCTGCTTCACAATCTT 59.627 45.455 0.00 0.00 0.00 2.40
987 5898 1.345741 TGTCTCTGAAGTTGCCTCTGG 59.654 52.381 0.00 0.00 0.00 3.86
993 5904 1.527311 GTTCGGTGTCTCTGAAGTTGC 59.473 52.381 0.00 0.00 41.44 4.17
994 5905 2.540101 GTGTTCGGTGTCTCTGAAGTTG 59.460 50.000 0.00 0.00 41.44 3.16
995 5906 2.483188 GGTGTTCGGTGTCTCTGAAGTT 60.483 50.000 0.00 0.00 41.44 2.66
996 5907 1.068741 GGTGTTCGGTGTCTCTGAAGT 59.931 52.381 0.00 0.00 41.44 3.01
997 5908 1.784525 GGTGTTCGGTGTCTCTGAAG 58.215 55.000 0.00 0.00 41.44 3.02
998 5909 0.031585 CGGTGTTCGGTGTCTCTGAA 59.968 55.000 0.00 0.00 38.90 3.02
999 5910 0.820482 TCGGTGTTCGGTGTCTCTGA 60.820 55.000 0.00 0.00 39.77 3.27
1000 5911 0.031585 TTCGGTGTTCGGTGTCTCTG 59.968 55.000 0.00 0.00 39.77 3.35
1001 5912 0.031721 GTTCGGTGTTCGGTGTCTCT 59.968 55.000 0.00 0.00 39.77 3.10
1002 5913 0.249155 TGTTCGGTGTTCGGTGTCTC 60.249 55.000 0.00 0.00 39.77 3.36
1003 5914 0.529119 GTGTTCGGTGTTCGGTGTCT 60.529 55.000 0.00 0.00 39.77 3.41
1004 5915 1.493134 GGTGTTCGGTGTTCGGTGTC 61.493 60.000 0.00 0.00 39.77 3.67
1005 5916 1.522130 GGTGTTCGGTGTTCGGTGT 60.522 57.895 0.00 0.00 39.77 4.16
1006 5917 2.591311 CGGTGTTCGGTGTTCGGTG 61.591 63.158 0.00 0.00 39.77 4.94
1007 5918 2.279650 CGGTGTTCGGTGTTCGGT 60.280 61.111 0.00 0.00 39.77 4.69
1018 5929 0.900647 CCCTGTCTCTCTCCGGTGTT 60.901 60.000 0.00 0.00 0.00 3.32
1193 6108 1.066587 GGCGTCCTGGAGATCTTCG 59.933 63.158 0.00 0.00 0.00 3.79
1530 6480 2.022129 CTTCGCCGCCATCGATACC 61.022 63.158 0.00 0.00 38.10 2.73
1531 6481 2.022129 CCTTCGCCGCCATCGATAC 61.022 63.158 0.00 0.00 38.10 2.24
1532 6482 2.338620 CCTTCGCCGCCATCGATA 59.661 61.111 0.00 0.00 38.10 2.92
2000 6956 0.530870 GGAGGCGTTATCAGAGGCAC 60.531 60.000 0.00 0.00 32.33 5.01
2054 7010 2.980233 GGTCACCACCAGCAGCAC 60.980 66.667 0.00 0.00 43.17 4.40
2066 7022 4.796495 GGGCATCCACGGGGTCAC 62.796 72.222 2.12 0.00 34.93 3.67
2091 7047 2.680707 TGTCCACGGGCACGGATA 60.681 61.111 15.46 0.00 46.48 2.59
2108 7064 0.534412 CTCGTCTTCAGCCATCTGGT 59.466 55.000 0.00 0.00 40.69 4.00
3038 8036 4.621991 CTTGATAGTCGGTACATCAAGGG 58.378 47.826 18.50 2.91 46.17 3.95
3117 8212 8.607459 AGATACGAAAAGATTACTCAAATGCTG 58.393 33.333 0.00 0.00 0.00 4.41
3191 8286 2.481276 CGCCACTCAAATGATCCGACTA 60.481 50.000 0.00 0.00 0.00 2.59
3192 8287 1.740380 CGCCACTCAAATGATCCGACT 60.740 52.381 0.00 0.00 0.00 4.18
3193 8288 0.652592 CGCCACTCAAATGATCCGAC 59.347 55.000 0.00 0.00 0.00 4.79
3194 8289 0.534873 TCGCCACTCAAATGATCCGA 59.465 50.000 0.00 0.00 0.00 4.55
3195 8290 1.262417 CATCGCCACTCAAATGATCCG 59.738 52.381 0.00 0.00 0.00 4.18
3198 8293 1.402968 GTGCATCGCCACTCAAATGAT 59.597 47.619 0.00 0.00 33.02 2.45
3201 8333 1.466856 ATGTGCATCGCCACTCAAAT 58.533 45.000 0.00 0.00 36.68 2.32
3211 8343 3.437428 CCAAACATGGTTATGTGCATCG 58.563 45.455 0.00 0.00 46.54 3.84
3291 8426 1.135803 CGGTATGCCACCTTTTTCACG 60.136 52.381 0.00 0.00 46.19 4.35
3418 8951 6.128172 CGAGTGTTTCAAGAAGCCATAGAAAT 60.128 38.462 0.00 0.00 31.73 2.17
3419 8952 5.179368 CGAGTGTTTCAAGAAGCCATAGAAA 59.821 40.000 0.00 0.00 0.00 2.52
3434 8967 3.994392 TGAATAGAGCAACCGAGTGTTTC 59.006 43.478 0.00 0.00 34.00 2.78
3443 8976 5.239525 ACACACTTTTCTGAATAGAGCAACC 59.760 40.000 13.64 0.00 33.70 3.77
3467 9000 1.842052 ATGTGCATCACCATTCAGCA 58.158 45.000 0.00 0.00 32.73 4.41
3548 9096 5.757850 ACCTTTCTCACATTCTTGACAAC 57.242 39.130 0.00 0.00 0.00 3.32
3623 9187 6.936900 AGAATGTAAGACTACAGTTGCACATT 59.063 34.615 12.41 12.41 41.33 2.71
3995 9888 7.726033 AAGCTATCCTTCTTTTCTAGTCAGA 57.274 36.000 0.00 0.00 0.00 3.27
4058 9951 5.074804 TCCTAGTATGCATTAGCCGTTCTA 58.925 41.667 3.54 0.00 41.13 2.10
4059 9952 3.895656 TCCTAGTATGCATTAGCCGTTCT 59.104 43.478 3.54 0.00 41.13 3.01
4079 9976 5.350640 CCAAGTACTTCGTATTTTGGACTCC 59.649 44.000 4.77 0.00 37.58 3.85
4452 10380 0.823356 TGCTTCACAAACCCTGCTCC 60.823 55.000 0.00 0.00 0.00 4.70
4494 10422 2.410730 CGCGGTTCGAAAAACTATGACT 59.589 45.455 0.00 0.00 41.67 3.41
4530 10458 5.751028 GTCAGAACATACCTTCAGCATAGAC 59.249 44.000 0.00 0.00 0.00 2.59
4575 10503 1.891150 ACGGTTAAAGCGAGGAAGAGA 59.109 47.619 0.00 0.00 42.41 3.10
4684 10612 3.742327 CGTGTCCAGGATAGCATGAACAT 60.742 47.826 0.00 0.00 0.00 2.71
4685 10613 2.418609 CGTGTCCAGGATAGCATGAACA 60.419 50.000 0.00 0.00 0.00 3.18
4779 10707 1.600916 GGTGACTTTCCTGCGCCTT 60.601 57.895 4.18 0.00 0.00 4.35
4804 10732 1.449778 GCCTTCCCCTAAGTGCGAC 60.450 63.158 0.00 0.00 32.89 5.19
5001 10929 1.152483 AGCTTGAGGGGCAAAGCAA 60.152 52.632 9.78 0.00 35.74 3.91
5150 12064 2.771943 TGAAGAATAGGCCCGTGAAGAT 59.228 45.455 0.00 0.00 0.00 2.40
5156 12070 3.506067 CACTTTTTGAAGAATAGGCCCGT 59.494 43.478 0.00 0.00 0.00 5.28
5157 12071 3.506067 ACACTTTTTGAAGAATAGGCCCG 59.494 43.478 0.00 0.00 0.00 6.13
5158 12072 5.230182 CAACACTTTTTGAAGAATAGGCCC 58.770 41.667 0.00 0.00 0.00 5.80
5159 12073 5.230182 CCAACACTTTTTGAAGAATAGGCC 58.770 41.667 0.00 0.00 0.00 5.19
5160 12074 5.230182 CCCAACACTTTTTGAAGAATAGGC 58.770 41.667 0.00 0.00 0.00 3.93
5161 12075 5.783111 CCCCAACACTTTTTGAAGAATAGG 58.217 41.667 0.00 0.00 0.00 2.57
5162 12076 5.221422 TGCCCCAACACTTTTTGAAGAATAG 60.221 40.000 0.00 0.00 0.00 1.73
5163 12077 4.651503 TGCCCCAACACTTTTTGAAGAATA 59.348 37.500 0.00 0.00 0.00 1.75
5164 12078 3.454082 TGCCCCAACACTTTTTGAAGAAT 59.546 39.130 0.00 0.00 0.00 2.40
5165 12079 2.834549 TGCCCCAACACTTTTTGAAGAA 59.165 40.909 0.00 0.00 0.00 2.52
5166 12080 2.167487 GTGCCCCAACACTTTTTGAAGA 59.833 45.455 0.00 0.00 37.58 2.87
5167 12081 2.549926 GTGCCCCAACACTTTTTGAAG 58.450 47.619 0.00 0.00 37.58 3.02
5168 12082 2.682155 GTGCCCCAACACTTTTTGAA 57.318 45.000 0.00 0.00 37.58 2.69
5176 12090 2.032981 CTTGACAGTGCCCCAACAC 58.967 57.895 0.00 0.00 41.02 3.32
5177 12091 1.827789 GCTTGACAGTGCCCCAACA 60.828 57.895 0.00 0.00 0.00 3.33
5178 12092 1.827789 TGCTTGACAGTGCCCCAAC 60.828 57.895 0.00 0.00 0.00 3.77
5179 12093 1.827789 GTGCTTGACAGTGCCCCAA 60.828 57.895 0.00 0.00 0.00 4.12
5180 12094 2.203337 GTGCTTGACAGTGCCCCA 60.203 61.111 0.00 0.00 0.00 4.96
5181 12095 3.357079 CGTGCTTGACAGTGCCCC 61.357 66.667 0.00 0.00 0.00 5.80
5182 12096 2.280797 TCGTGCTTGACAGTGCCC 60.281 61.111 0.00 0.00 0.00 5.36
5183 12097 2.607892 GGTCGTGCTTGACAGTGCC 61.608 63.158 10.37 0.00 40.72 5.01
5184 12098 1.560860 GAGGTCGTGCTTGACAGTGC 61.561 60.000 10.37 0.00 40.72 4.40
5185 12099 0.249447 TGAGGTCGTGCTTGACAGTG 60.249 55.000 10.37 0.00 40.72 3.66
5186 12100 0.681733 ATGAGGTCGTGCTTGACAGT 59.318 50.000 10.37 0.00 40.72 3.55
5187 12101 1.073964 CATGAGGTCGTGCTTGACAG 58.926 55.000 10.37 0.00 40.72 3.51
5188 12102 0.678950 TCATGAGGTCGTGCTTGACA 59.321 50.000 10.37 0.00 40.72 3.58
5189 12103 1.354040 CTCATGAGGTCGTGCTTGAC 58.646 55.000 15.38 0.86 38.17 3.18
5190 12104 0.247460 CCTCATGAGGTCGTGCTTGA 59.753 55.000 30.55 0.00 43.61 3.02
5191 12105 2.759783 CCTCATGAGGTCGTGCTTG 58.240 57.895 30.55 4.60 43.61 4.01
5201 12115 1.164662 CGAGCAATGGCCCTCATGAG 61.165 60.000 16.24 16.24 42.56 2.90
5202 12116 1.153107 CGAGCAATGGCCCTCATGA 60.153 57.895 0.00 0.00 42.56 3.07
5203 12117 1.033746 AACGAGCAATGGCCCTCATG 61.034 55.000 0.00 0.00 42.56 3.07
5204 12118 0.323725 AAACGAGCAATGGCCCTCAT 60.324 50.000 0.00 0.00 42.56 2.90
5205 12119 0.960364 GAAACGAGCAATGGCCCTCA 60.960 55.000 0.00 0.00 42.56 3.86
5206 12120 1.803289 GAAACGAGCAATGGCCCTC 59.197 57.895 0.00 0.00 42.56 4.30
5207 12121 2.040544 CGAAACGAGCAATGGCCCT 61.041 57.895 0.00 0.00 42.56 5.19
5208 12122 2.038269 TCGAAACGAGCAATGGCCC 61.038 57.895 0.00 0.00 42.56 5.80
5209 12123 1.134694 GTCGAAACGAGCAATGGCC 59.865 57.895 0.00 0.00 42.56 5.36
5210 12124 0.095417 GAGTCGAAACGAGCAATGGC 59.905 55.000 0.00 0.00 36.23 4.40
5211 12125 0.721718 GGAGTCGAAACGAGCAATGG 59.278 55.000 0.00 0.00 36.23 3.16
5212 12126 0.721718 GGGAGTCGAAACGAGCAATG 59.278 55.000 0.00 0.00 36.23 2.82
5213 12127 0.608640 AGGGAGTCGAAACGAGCAAT 59.391 50.000 0.00 0.00 36.23 3.56
5214 12128 0.038526 GAGGGAGTCGAAACGAGCAA 60.039 55.000 0.00 0.00 36.23 3.91
5215 12129 1.585006 GAGGGAGTCGAAACGAGCA 59.415 57.895 0.00 0.00 36.23 4.26
5216 12130 1.153804 GGAGGGAGTCGAAACGAGC 60.154 63.158 0.00 0.00 36.23 5.03
5217 12131 0.109226 GTGGAGGGAGTCGAAACGAG 60.109 60.000 0.00 0.00 36.23 4.18
5218 12132 0.824595 TGTGGAGGGAGTCGAAACGA 60.825 55.000 0.00 0.00 0.00 3.85
5219 12133 0.666577 GTGTGGAGGGAGTCGAAACG 60.667 60.000 0.00 0.00 0.00 3.60
5220 12134 0.680061 AGTGTGGAGGGAGTCGAAAC 59.320 55.000 0.00 0.00 0.00 2.78
5221 12135 1.343465 GAAGTGTGGAGGGAGTCGAAA 59.657 52.381 0.00 0.00 0.00 3.46
5222 12136 0.966920 GAAGTGTGGAGGGAGTCGAA 59.033 55.000 0.00 0.00 0.00 3.71
5223 12137 1.241990 CGAAGTGTGGAGGGAGTCGA 61.242 60.000 0.00 0.00 0.00 4.20
5224 12138 1.213013 CGAAGTGTGGAGGGAGTCG 59.787 63.158 0.00 0.00 0.00 4.18
5225 12139 0.966920 TTCGAAGTGTGGAGGGAGTC 59.033 55.000 0.00 0.00 0.00 3.36
5226 12140 0.680061 GTTCGAAGTGTGGAGGGAGT 59.320 55.000 0.00 0.00 0.00 3.85
5227 12141 0.037232 GGTTCGAAGTGTGGAGGGAG 60.037 60.000 0.00 0.00 0.00 4.30
5228 12142 0.471211 AGGTTCGAAGTGTGGAGGGA 60.471 55.000 0.00 0.00 0.00 4.20
5229 12143 0.037232 GAGGTTCGAAGTGTGGAGGG 60.037 60.000 0.00 0.00 0.00 4.30
5230 12144 0.037232 GGAGGTTCGAAGTGTGGAGG 60.037 60.000 0.00 0.00 0.00 4.30
5231 12145 0.679505 TGGAGGTTCGAAGTGTGGAG 59.320 55.000 0.00 0.00 0.00 3.86
5232 12146 0.391597 GTGGAGGTTCGAAGTGTGGA 59.608 55.000 0.00 0.00 0.00 4.02
5233 12147 0.393077 AGTGGAGGTTCGAAGTGTGG 59.607 55.000 0.00 0.00 0.00 4.17
5234 12148 1.502231 CAGTGGAGGTTCGAAGTGTG 58.498 55.000 0.00 0.00 0.00 3.82
5235 12149 0.393077 CCAGTGGAGGTTCGAAGTGT 59.607 55.000 1.68 0.00 0.00 3.55
5236 12150 0.951040 GCCAGTGGAGGTTCGAAGTG 60.951 60.000 15.20 0.00 0.00 3.16
5237 12151 1.122019 AGCCAGTGGAGGTTCGAAGT 61.122 55.000 15.20 0.00 0.00 3.01
5238 12152 0.390472 GAGCCAGTGGAGGTTCGAAG 60.390 60.000 15.20 0.00 0.00 3.79
5239 12153 1.118965 TGAGCCAGTGGAGGTTCGAA 61.119 55.000 15.20 0.00 41.31 3.71
5240 12154 1.118965 TTGAGCCAGTGGAGGTTCGA 61.119 55.000 15.20 1.33 41.31 3.71
5241 12155 0.951040 GTTGAGCCAGTGGAGGTTCG 60.951 60.000 15.20 0.00 41.31 3.95
5242 12156 0.398318 AGTTGAGCCAGTGGAGGTTC 59.602 55.000 15.20 4.94 39.14 3.62
5243 12157 0.398318 GAGTTGAGCCAGTGGAGGTT 59.602 55.000 15.20 0.00 0.00 3.50
5244 12158 0.472734 AGAGTTGAGCCAGTGGAGGT 60.473 55.000 15.20 0.00 0.00 3.85
5245 12159 0.036577 CAGAGTTGAGCCAGTGGAGG 60.037 60.000 15.20 0.00 0.00 4.30
5246 12160 0.673022 GCAGAGTTGAGCCAGTGGAG 60.673 60.000 15.20 0.00 0.00 3.86
5247 12161 1.372683 GCAGAGTTGAGCCAGTGGA 59.627 57.895 15.20 0.00 0.00 4.02
5248 12162 2.031516 CGCAGAGTTGAGCCAGTGG 61.032 63.158 4.20 4.20 0.00 4.00
5249 12163 0.601046 TTCGCAGAGTTGAGCCAGTG 60.601 55.000 0.00 0.00 38.43 3.66
5250 12164 0.322975 ATTCGCAGAGTTGAGCCAGT 59.677 50.000 0.00 0.00 38.43 4.00
5251 12165 0.725686 CATTCGCAGAGTTGAGCCAG 59.274 55.000 0.00 0.00 38.43 4.85
5252 12166 0.035317 ACATTCGCAGAGTTGAGCCA 59.965 50.000 0.00 0.00 38.43 4.75
5253 12167 0.445436 CACATTCGCAGAGTTGAGCC 59.555 55.000 0.00 0.00 38.43 4.70
5254 12168 0.445436 CCACATTCGCAGAGTTGAGC 59.555 55.000 0.00 0.00 38.43 4.26
5255 12169 1.462283 CACCACATTCGCAGAGTTGAG 59.538 52.381 0.00 0.00 38.43 3.02
5256 12170 1.511850 CACCACATTCGCAGAGTTGA 58.488 50.000 0.00 0.00 38.43 3.18
5257 12171 0.110056 GCACCACATTCGCAGAGTTG 60.110 55.000 0.00 0.00 38.43 3.16
5258 12172 0.250467 AGCACCACATTCGCAGAGTT 60.250 50.000 0.00 0.00 38.43 3.01
5259 12173 0.671781 GAGCACCACATTCGCAGAGT 60.672 55.000 0.00 0.00 38.43 3.24
5260 12174 0.390866 AGAGCACCACATTCGCAGAG 60.391 55.000 0.00 0.00 38.43 3.35
5261 12175 0.035317 AAGAGCACCACATTCGCAGA 59.965 50.000 0.00 0.00 0.00 4.26
5262 12176 0.167470 CAAGAGCACCACATTCGCAG 59.833 55.000 0.00 0.00 0.00 5.18
5263 12177 1.855213 GCAAGAGCACCACATTCGCA 61.855 55.000 0.00 0.00 41.58 5.10
5264 12178 1.154150 GCAAGAGCACCACATTCGC 60.154 57.895 0.00 0.00 41.58 4.70
5265 12179 1.236616 TGGCAAGAGCACCACATTCG 61.237 55.000 0.00 0.00 44.61 3.34
5266 12180 0.961019 TTGGCAAGAGCACCACATTC 59.039 50.000 0.00 0.00 44.61 2.67
5267 12181 1.412079 TTTGGCAAGAGCACCACATT 58.588 45.000 0.00 0.00 44.61 2.71
5268 12182 1.412079 TTTTGGCAAGAGCACCACAT 58.588 45.000 0.00 0.00 44.61 3.21
5269 12183 1.189752 TTTTTGGCAAGAGCACCACA 58.810 45.000 0.00 0.00 44.61 4.17
5285 12199 0.041684 CCCTCTGCCCCATCCTTTTT 59.958 55.000 0.00 0.00 0.00 1.94
5286 12200 1.699752 CCCTCTGCCCCATCCTTTT 59.300 57.895 0.00 0.00 0.00 2.27
5287 12201 2.319762 CCCCTCTGCCCCATCCTTT 61.320 63.158 0.00 0.00 0.00 3.11
5288 12202 2.590411 ATCCCCTCTGCCCCATCCTT 62.590 60.000 0.00 0.00 0.00 3.36
5289 12203 2.590411 AATCCCCTCTGCCCCATCCT 62.590 60.000 0.00 0.00 0.00 3.24
5290 12204 2.087461 AATCCCCTCTGCCCCATCC 61.087 63.158 0.00 0.00 0.00 3.51
5291 12205 1.152368 CAATCCCCTCTGCCCCATC 59.848 63.158 0.00 0.00 0.00 3.51
5292 12206 3.078843 GCAATCCCCTCTGCCCCAT 62.079 63.158 0.00 0.00 32.18 4.00
5293 12207 3.743017 GCAATCCCCTCTGCCCCA 61.743 66.667 0.00 0.00 32.18 4.96
5294 12208 3.728292 CTGCAATCCCCTCTGCCCC 62.728 68.421 0.00 0.00 37.79 5.80
5295 12209 2.123982 CTGCAATCCCCTCTGCCC 60.124 66.667 0.00 0.00 37.79 5.36
5296 12210 1.452833 GTCTGCAATCCCCTCTGCC 60.453 63.158 0.00 0.00 37.79 4.85
5297 12211 0.833287 TAGTCTGCAATCCCCTCTGC 59.167 55.000 0.00 0.00 39.09 4.26
5298 12212 3.260380 CCTATAGTCTGCAATCCCCTCTG 59.740 52.174 0.00 0.00 0.00 3.35
5299 12213 3.515562 CCTATAGTCTGCAATCCCCTCT 58.484 50.000 0.00 0.00 0.00 3.69
5300 12214 2.027653 GCCTATAGTCTGCAATCCCCTC 60.028 54.545 0.00 0.00 0.00 4.30
5301 12215 1.981495 GCCTATAGTCTGCAATCCCCT 59.019 52.381 0.00 0.00 0.00 4.79
5302 12216 2.481289 GCCTATAGTCTGCAATCCCC 57.519 55.000 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.