Multiple sequence alignment - TraesCS2B01G164700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G164700 chr2B 100.000 4345 0 0 1 4345 136804459 136808803 0.000000e+00 8024.0
1 TraesCS2B01G164700 chr2B 97.435 2300 36 8 1550 3827 137608121 137610419 0.000000e+00 3899.0
2 TraesCS2B01G164700 chr2B 98.438 2177 14 3 1671 3827 136951179 136953355 0.000000e+00 3814.0
3 TraesCS2B01G164700 chr2B 89.756 2743 160 64 668 3381 137187587 137190237 0.000000e+00 3397.0
4 TraesCS2B01G164700 chr2B 86.544 1360 121 36 1 1335 136949429 136950751 0.000000e+00 1441.0
5 TraesCS2B01G164700 chr2B 95.411 523 11 7 3824 4345 136630585 136631095 0.000000e+00 821.0
6 TraesCS2B01G164700 chr2B 95.411 523 10 8 3824 4345 137615006 137615515 0.000000e+00 821.0
7 TraesCS2B01G164700 chr2B 85.190 736 77 19 7 729 137606760 137607476 0.000000e+00 726.0
8 TraesCS2B01G164700 chr2B 96.497 314 10 1 1336 1649 136950886 136951198 6.440000e-143 518.0
9 TraesCS2B01G164700 chr2B 82.075 530 56 18 3826 4345 137011052 137011552 2.420000e-112 416.0
10 TraesCS2B01G164700 chr2B 92.933 283 13 3 900 1175 137607566 137607848 5.230000e-109 405.0
11 TraesCS2B01G164700 chr2B 88.966 290 15 1 1261 1550 137607879 137608151 4.160000e-90 342.0
12 TraesCS2B01G164700 chr2B 86.022 279 32 5 1 273 137144535 137144812 4.250000e-75 292.0
13 TraesCS2B01G164700 chr2B 88.119 202 11 3 3847 4048 182150075 182150263 1.220000e-55 228.0
14 TraesCS2B01G164700 chr2B 95.690 116 5 0 3852 3967 135360860 135360745 2.060000e-43 187.0
15 TraesCS2B01G164700 chr2B 95.690 116 5 0 3852 3967 135361153 135361038 2.060000e-43 187.0
16 TraesCS2B01G164700 chr2B 93.421 76 4 1 771 846 137607479 137607553 1.280000e-20 111.0
17 TraesCS2B01G164700 chr2D 90.186 3444 220 45 1 3381 85671756 85675144 0.000000e+00 4379.0
18 TraesCS2B01G164700 chr2D 94.936 2350 68 21 1524 3826 85388858 85391203 0.000000e+00 3633.0
19 TraesCS2B01G164700 chr2D 92.792 1859 105 7 1540 3381 84916312 84918158 0.000000e+00 2663.0
20 TraesCS2B01G164700 chr2D 88.153 1570 117 28 1 1520 84914779 84916329 0.000000e+00 1805.0
21 TraesCS2B01G164700 chr2D 92.098 696 33 12 900 1580 85388196 85388884 0.000000e+00 961.0
22 TraesCS2B01G164700 chr2D 85.006 867 89 22 1 846 85387337 85388183 0.000000e+00 843.0
23 TraesCS2B01G164700 chr2D 84.369 531 39 19 3824 4345 84770664 84771159 8.450000e-132 481.0
24 TraesCS2B01G164700 chr2D 83.015 524 51 16 3824 4345 84928455 84928942 1.430000e-119 440.0
25 TraesCS2B01G164700 chr2D 86.755 302 19 5 4046 4345 85396331 85396613 2.520000e-82 316.0
26 TraesCS2B01G164700 chr2D 86.522 230 15 6 3824 4053 85395998 85396211 5.620000e-59 239.0
27 TraesCS2B01G164700 chr2D 84.483 116 17 1 1408 1523 499903436 499903322 3.550000e-21 113.0
28 TraesCS2B01G164700 chr2D 78.899 109 5 12 1426 1520 142675724 142675620 1.690000e-04 58.4
29 TraesCS2B01G164700 chr2A 90.354 1524 132 11 1866 3381 84154116 84152600 0.000000e+00 1986.0
30 TraesCS2B01G164700 chr2A 84.803 533 38 9 3824 4345 85605065 85605565 3.020000e-136 496.0
31 TraesCS2B01G164700 chr2A 87.192 203 13 3 3846 4048 83988173 83987984 7.320000e-53 219.0
32 TraesCS2B01G164700 chr2A 90.625 96 9 0 1287 1382 84154377 84154282 1.270000e-25 128.0
33 TraesCS2B01G164700 chr2A 83.761 117 10 3 4238 4345 83987701 83987585 7.690000e-18 102.0
34 TraesCS2B01G164700 chr4B 93.296 537 14 7 3312 3826 446685640 446686176 0.000000e+00 773.0
35 TraesCS2B01G164700 chr3B 92.179 537 18 5 3312 3826 124618410 124618944 0.000000e+00 737.0
36 TraesCS2B01G164700 chr3B 76.303 1266 253 31 2105 3352 824391358 824392594 2.200000e-177 632.0
37 TraesCS2B01G164700 chr3B 75.984 1270 248 33 2105 3352 764449309 764450543 1.730000e-168 603.0
38 TraesCS2B01G164700 chrUn 76.531 1274 261 30 2105 3358 320961871 320963126 0.000000e+00 662.0
39 TraesCS2B01G164700 chr7A 75.524 1287 254 45 2106 3365 32413303 32414555 3.770000e-160 575.0
40 TraesCS2B01G164700 chr7A 87.834 337 20 8 3824 4155 571312723 571313043 4.100000e-100 375.0
41 TraesCS2B01G164700 chr7A 89.205 176 17 1 4172 4345 571318640 571318815 7.320000e-53 219.0
42 TraesCS2B01G164700 chr7A 96.154 130 5 0 3697 3826 571276068 571276197 3.400000e-51 213.0
43 TraesCS2B01G164700 chr7A 81.726 197 27 8 1664 1854 522982765 522982958 5.820000e-34 156.0
44 TraesCS2B01G164700 chr7A 81.915 94 14 3 1540 1630 269271899 269271992 4.660000e-10 76.8
45 TraesCS2B01G164700 chr4A 73.761 1231 260 44 2142 3345 717966792 717965598 4.020000e-115 425.0
46 TraesCS2B01G164700 chr7D 74.393 1070 214 37 2142 3187 16708757 16709790 1.880000e-108 403.0
47 TraesCS2B01G164700 chr7D 81.452 124 13 5 1492 1615 633355352 633355465 4.630000e-15 93.5
48 TraesCS2B01G164700 chr5D 77.108 249 21 13 1397 1621 234843008 234843244 1.280000e-20 111.0
49 TraesCS2B01G164700 chr5D 85.000 60 9 0 1526 1585 46603899 46603840 1.300000e-05 62.1
50 TraesCS2B01G164700 chr5A 93.750 48 3 0 1408 1455 613462676 613462723 6.030000e-09 73.1
51 TraesCS2B01G164700 chr5A 76.812 138 19 9 1395 1520 309313457 309313593 1.010000e-06 65.8
52 TraesCS2B01G164700 chr1D 97.297 37 1 0 3551 3587 38596749 38596713 3.630000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G164700 chr2B 136804459 136808803 4344 False 8024.000000 8024 100.000000 1 4345 1 chr2B.!!$F2 4344
1 TraesCS2B01G164700 chr2B 137187587 137190237 2650 False 3397.000000 3397 89.756000 668 3381 1 chr2B.!!$F5 2713
2 TraesCS2B01G164700 chr2B 136949429 136953355 3926 False 1924.333333 3814 93.826333 1 3827 3 chr2B.!!$F8 3826
3 TraesCS2B01G164700 chr2B 137606760 137610419 3659 False 1096.600000 3899 91.589000 7 3827 5 chr2B.!!$F9 3820
4 TraesCS2B01G164700 chr2B 136630585 136631095 510 False 821.000000 821 95.411000 3824 4345 1 chr2B.!!$F1 521
5 TraesCS2B01G164700 chr2B 137615006 137615515 509 False 821.000000 821 95.411000 3824 4345 1 chr2B.!!$F6 521
6 TraesCS2B01G164700 chr2B 137011052 137011552 500 False 416.000000 416 82.075000 3826 4345 1 chr2B.!!$F3 519
7 TraesCS2B01G164700 chr2D 85671756 85675144 3388 False 4379.000000 4379 90.186000 1 3381 1 chr2D.!!$F3 3380
8 TraesCS2B01G164700 chr2D 84914779 84918158 3379 False 2234.000000 2663 90.472500 1 3381 2 chr2D.!!$F4 3380
9 TraesCS2B01G164700 chr2D 85387337 85391203 3866 False 1812.333333 3633 90.680000 1 3826 3 chr2D.!!$F5 3825
10 TraesCS2B01G164700 chr2D 85395998 85396613 615 False 277.500000 316 86.638500 3824 4345 2 chr2D.!!$F6 521
11 TraesCS2B01G164700 chr2A 84152600 84154377 1777 True 1057.000000 1986 90.489500 1287 3381 2 chr2A.!!$R2 2094
12 TraesCS2B01G164700 chr2A 85605065 85605565 500 False 496.000000 496 84.803000 3824 4345 1 chr2A.!!$F1 521
13 TraesCS2B01G164700 chr4B 446685640 446686176 536 False 773.000000 773 93.296000 3312 3826 1 chr4B.!!$F1 514
14 TraesCS2B01G164700 chr3B 124618410 124618944 534 False 737.000000 737 92.179000 3312 3826 1 chr3B.!!$F1 514
15 TraesCS2B01G164700 chr3B 824391358 824392594 1236 False 632.000000 632 76.303000 2105 3352 1 chr3B.!!$F3 1247
16 TraesCS2B01G164700 chr3B 764449309 764450543 1234 False 603.000000 603 75.984000 2105 3352 1 chr3B.!!$F2 1247
17 TraesCS2B01G164700 chrUn 320961871 320963126 1255 False 662.000000 662 76.531000 2105 3358 1 chrUn.!!$F1 1253
18 TraesCS2B01G164700 chr7A 32413303 32414555 1252 False 575.000000 575 75.524000 2106 3365 1 chr7A.!!$F1 1259
19 TraesCS2B01G164700 chr4A 717965598 717966792 1194 True 425.000000 425 73.761000 2142 3345 1 chr4A.!!$R1 1203
20 TraesCS2B01G164700 chr7D 16708757 16709790 1033 False 403.000000 403 74.393000 2142 3187 1 chr7D.!!$F1 1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 239 0.109781 GGCTCGTCGTGGTACGTTTA 60.110 55.0 0.0 0.0 43.14 2.01 F
931 999 0.458716 CTTCCTCCGCCTCTTCGTTC 60.459 60.0 0.0 0.0 0.00 3.95 F
1075 1159 0.545548 GTGACCTGTCCCTCCCTCTT 60.546 60.0 0.0 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1035 1119 1.371183 GTGTGCAGACCTAGTGGCA 59.629 57.895 1.72 0.0 36.63 4.92 R
1838 2157 2.037251 GTGATATTTGGGAGCGGCTAGA 59.963 50.000 0.60 0.0 0.00 2.43 R
3540 4076 5.074115 TCCTGGATGAACAATTAAACCGTT 58.926 37.500 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 2.754658 GAGCTCCTCGGTCCGGAA 60.755 66.667 5.23 0.00 34.06 4.30
97 99 2.577700 TCCTAGAGTCTGATTCGGCTC 58.422 52.381 1.86 8.17 0.00 4.70
122 124 0.618458 ATCCGTAGTTGGCATGGTGT 59.382 50.000 0.00 0.00 0.00 4.16
129 131 0.318614 GTTGGCATGGTGTTCGTTGG 60.319 55.000 0.00 0.00 0.00 3.77
135 137 0.467290 ATGGTGTTCGTTGGTGGCTT 60.467 50.000 0.00 0.00 0.00 4.35
162 164 3.293714 CGGCAATGTGGGTGTGCA 61.294 61.111 0.00 0.00 40.12 4.57
175 177 2.743928 GTGCAAGGTCGAGGCTGG 60.744 66.667 0.00 0.00 0.00 4.85
232 239 0.109781 GGCTCGTCGTGGTACGTTTA 60.110 55.000 0.00 0.00 43.14 2.01
241 248 5.153513 GTCGTGGTACGTTTATTGTAGTGA 58.846 41.667 0.00 0.00 43.14 3.41
314 325 3.551659 CCATCTCGATGATTCTTCGCAGA 60.552 47.826 15.05 16.58 41.20 4.26
325 336 0.886490 CTTCGCAGAGCCAACCTTGT 60.886 55.000 0.00 0.00 38.43 3.16
329 340 1.933853 CGCAGAGCCAACCTTGTATAC 59.066 52.381 0.00 0.00 0.00 1.47
350 361 2.668457 CTGCTCTGTCGCTCGTTTATTT 59.332 45.455 0.00 0.00 0.00 1.40
375 386 2.206536 CCATTGTTGGCCCCGTTGT 61.207 57.895 0.00 0.00 35.85 3.32
437 451 0.602638 TTCTGCCGCTTCGATGTGTT 60.603 50.000 10.54 0.00 0.00 3.32
441 455 1.076332 GCCGCTTCGATGTGTTACTT 58.924 50.000 10.54 0.00 0.00 2.24
448 462 5.052304 CGCTTCGATGTGTTACTTAGTCATC 60.052 44.000 3.81 0.00 33.75 2.92
515 529 4.110482 GACGATGACGCTAAGGTACAAAT 58.890 43.478 0.00 0.00 43.96 2.32
520 534 4.309099 TGACGCTAAGGTACAAATTCGTT 58.691 39.130 0.00 0.00 0.00 3.85
555 569 9.244799 CTTCGTAGCAGTGTGTGATTTATATTA 57.755 33.333 0.00 0.00 0.00 0.98
619 660 9.856162 TTTTTCTCTAATTAACCAGGTAACACT 57.144 29.630 0.00 0.00 41.41 3.55
620 661 9.498176 TTTTCTCTAATTAACCAGGTAACACTC 57.502 33.333 0.00 0.00 41.41 3.51
632 673 5.360591 CAGGTAACACTCACACTCTTCTTT 58.639 41.667 0.00 0.00 41.41 2.52
672 718 8.385898 TGAGTTTGCCCCGTTTATTTATATAG 57.614 34.615 0.00 0.00 0.00 1.31
673 719 8.212312 TGAGTTTGCCCCGTTTATTTATATAGA 58.788 33.333 0.00 0.00 0.00 1.98
674 720 8.617290 AGTTTGCCCCGTTTATTTATATAGAG 57.383 34.615 0.00 0.00 0.00 2.43
676 722 9.227777 GTTTGCCCCGTTTATTTATATAGAGAT 57.772 33.333 0.00 0.00 0.00 2.75
731 791 6.380274 TCCCTGTGTACTTATGGTAGAAGAAG 59.620 42.308 0.00 0.00 0.00 2.85
750 810 3.594603 AGGACGAGTGATACAAACAGG 57.405 47.619 0.00 0.00 0.00 4.00
850 916 1.801771 CCATCGGCGTAAGAAAACACA 59.198 47.619 6.85 0.00 43.02 3.72
894 962 2.033424 GGCACAGCCGATTCCTTTAATC 59.967 50.000 0.00 0.00 39.62 1.75
931 999 0.458716 CTTCCTCCGCCTCTTCGTTC 60.459 60.000 0.00 0.00 0.00 3.95
937 1013 2.654877 GCCTCTTCGTTCCCGACA 59.345 61.111 0.00 0.00 44.13 4.35
1063 1147 2.666190 CTGCACACCCGTGACCTG 60.666 66.667 0.96 0.00 46.80 4.00
1075 1159 0.545548 GTGACCTGTCCCTCCCTCTT 60.546 60.000 0.00 0.00 0.00 2.85
1175 1259 1.811941 GCAGCTATTGGTCAGTAGCCC 60.812 57.143 17.83 8.97 44.62 5.19
1235 1320 1.605710 CCACGAATGAATGATGCTCCC 59.394 52.381 0.00 0.00 0.00 4.30
1319 1416 2.105134 TGTTGTCCGGATAAACAGGTGT 59.895 45.455 24.17 0.00 35.40 4.16
1331 1428 1.745232 ACAGGTGTGAGTTTTGCGAA 58.255 45.000 0.00 0.00 0.00 4.70
1404 1635 5.172934 CAAACATCACCGGTTTAGCTACTA 58.827 41.667 2.97 0.00 36.38 1.82
1554 1816 3.563697 CCCGGTATCTATCTTAGGCTGGA 60.564 52.174 0.00 0.00 0.00 3.86
1658 1977 4.115199 GGTTCAGGGGAGCGCCAT 62.115 66.667 9.31 0.00 35.15 4.40
1659 1978 2.514824 GTTCAGGGGAGCGCCATC 60.515 66.667 9.31 0.00 35.15 3.51
1660 1979 3.797353 TTCAGGGGAGCGCCATCC 61.797 66.667 9.31 5.22 38.76 3.51
3877 4452 2.307496 AATGGACATGGTTCTTGGCA 57.693 45.000 0.00 0.00 0.00 4.92
4087 4843 7.742556 AAAGAAGTTCAGAAAGATCTTGGAG 57.257 36.000 9.17 1.90 36.62 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 1.464734 TTCGAGCCGAATCAGACTCT 58.535 50.000 6.01 0.00 41.05 3.24
97 99 3.186409 CCATGCCAACTACGGATATTTCG 59.814 47.826 0.00 0.00 0.00 3.46
102 104 1.834896 ACACCATGCCAACTACGGATA 59.165 47.619 0.00 0.00 0.00 2.59
104 106 0.398696 AACACCATGCCAACTACGGA 59.601 50.000 0.00 0.00 0.00 4.69
109 111 0.667993 CAACGAACACCATGCCAACT 59.332 50.000 0.00 0.00 0.00 3.16
122 124 1.380403 CCACACAAGCCACCAACGAA 61.380 55.000 0.00 0.00 0.00 3.85
129 131 4.332637 CGCTGCCACACAAGCCAC 62.333 66.667 0.00 0.00 0.00 5.01
135 137 3.672447 CATTGCCGCTGCCACACA 61.672 61.111 0.00 0.00 36.33 3.72
162 164 1.228894 TCACTCCAGCCTCGACCTT 60.229 57.895 0.00 0.00 0.00 3.50
232 239 4.516698 CCACAGCTTTGACTTCACTACAAT 59.483 41.667 0.17 0.00 0.00 2.71
241 248 1.898574 CCCGCCACAGCTTTGACTT 60.899 57.895 0.17 0.00 36.60 3.01
314 325 2.840651 AGAGCAGTATACAAGGTTGGCT 59.159 45.455 5.50 2.35 0.00 4.75
325 336 1.664873 ACGAGCGACAGAGCAGTATA 58.335 50.000 0.00 0.00 40.15 1.47
329 340 1.914634 ATAAACGAGCGACAGAGCAG 58.085 50.000 0.00 0.00 40.15 4.24
375 386 2.534298 CAAATGAACAACACACGCCAA 58.466 42.857 0.00 0.00 0.00 4.52
425 439 6.262323 GATGACTAAGTAACACATCGAAGC 57.738 41.667 0.00 0.00 0.00 3.86
437 451 3.767673 AGGAAGCAACCGATGACTAAGTA 59.232 43.478 0.00 0.00 34.73 2.24
441 455 3.695830 AAAGGAAGCAACCGATGACTA 57.304 42.857 0.00 0.00 34.73 2.59
448 462 4.561735 TTTGACTTAAAGGAAGCAACCG 57.438 40.909 0.00 0.00 38.92 4.44
515 529 8.377681 CACTGCTACGAAGAAAATATTAACGAA 58.622 33.333 0.00 0.00 0.00 3.85
520 534 7.815549 TCACACACTGCTACGAAGAAAATATTA 59.184 33.333 0.00 0.00 0.00 0.98
528 542 3.660501 AATCACACACTGCTACGAAGA 57.339 42.857 0.00 0.00 0.00 2.87
555 569 9.409918 ACTATACAACTCACTACACATAGACAT 57.590 33.333 0.00 0.00 32.23 3.06
610 651 5.615925 AAAGAAGAGTGTGAGTGTTACCT 57.384 39.130 0.00 0.00 0.00 3.08
613 654 9.607988 TGATTAAAAAGAAGAGTGTGAGTGTTA 57.392 29.630 0.00 0.00 0.00 2.41
615 656 8.682936 ATGATTAAAAAGAAGAGTGTGAGTGT 57.317 30.769 0.00 0.00 0.00 3.55
616 657 9.390795 CAATGATTAAAAAGAAGAGTGTGAGTG 57.609 33.333 0.00 0.00 0.00 3.51
617 658 9.342308 TCAATGATTAAAAAGAAGAGTGTGAGT 57.658 29.630 0.00 0.00 0.00 3.41
632 673 7.390162 GGGGCAAACTCATTTTCAATGATTAAA 59.610 33.333 0.00 0.00 0.00 1.52
731 791 2.232941 TCCCTGTTTGTATCACTCGTCC 59.767 50.000 0.00 0.00 0.00 4.79
767 827 2.156917 AGTCACACGATCGTTCCTACA 58.843 47.619 20.14 0.00 0.00 2.74
803 869 1.303236 CAACCGATGGAAGCCACCA 60.303 57.895 1.96 1.96 44.41 4.17
850 916 2.983930 GCCAGAGCTCGTCGTCTGT 61.984 63.158 8.37 0.00 38.88 3.41
931 999 1.064296 CTTCGTCGGATCTGTCGGG 59.936 63.158 18.84 9.98 0.00 5.14
937 1013 0.797249 CGCGTTTCTTCGTCGGATCT 60.797 55.000 0.00 0.00 0.00 2.75
985 1061 3.928769 CATGATCGTGCCACGCCG 61.929 66.667 13.39 0.00 42.21 6.46
992 1068 4.602696 GCGGCTGCATGATCGTGC 62.603 66.667 29.27 29.27 45.25 5.34
1035 1119 1.371183 GTGTGCAGACCTAGTGGCA 59.629 57.895 1.72 0.00 36.63 4.92
1039 1123 1.533273 ACGGGTGTGCAGACCTAGT 60.533 57.895 30.02 25.60 36.14 2.57
1175 1259 3.853671 GCAAAATTACCAAGATGCACGAG 59.146 43.478 0.00 0.00 34.10 4.18
1235 1320 2.590007 GCGTGCATCTAGGCAGGG 60.590 66.667 10.75 0.00 46.63 4.45
1319 1416 2.801342 GCCACCAATTTCGCAAAACTCA 60.801 45.455 0.00 0.00 0.00 3.41
1331 1428 4.420522 AACAAATCAAGTGCCACCAATT 57.579 36.364 0.00 0.00 0.00 2.32
1404 1635 7.228706 CCCAAATTATAAATTCAGGCGACTACT 59.771 37.037 0.00 0.00 40.21 2.57
1554 1816 6.153680 CCTAAGATAGATAATGAGGTCGCCTT 59.846 42.308 0.00 0.00 31.76 4.35
1641 1960 4.115199 ATGGCGCTCCCCTGAACC 62.115 66.667 7.64 0.00 0.00 3.62
1642 1961 2.514824 GATGGCGCTCCCCTGAAC 60.515 66.667 7.64 0.00 0.00 3.18
1643 1962 3.797353 GGATGGCGCTCCCCTGAA 61.797 66.667 7.64 0.00 0.00 3.02
1672 1991 4.530857 CCTAACCGCCTGCCTCCG 62.531 72.222 0.00 0.00 0.00 4.63
1673 1992 4.858680 GCCTAACCGCCTGCCTCC 62.859 72.222 0.00 0.00 0.00 4.30
1674 1993 3.330992 AAGCCTAACCGCCTGCCTC 62.331 63.158 0.00 0.00 0.00 4.70
1675 1994 3.330720 AAGCCTAACCGCCTGCCT 61.331 61.111 0.00 0.00 0.00 4.75
1676 1995 3.134127 CAAGCCTAACCGCCTGCC 61.134 66.667 0.00 0.00 0.00 4.85
1677 1996 2.359975 ACAAGCCTAACCGCCTGC 60.360 61.111 0.00 0.00 0.00 4.85
1838 2157 2.037251 GTGATATTTGGGAGCGGCTAGA 59.963 50.000 0.60 0.00 0.00 2.43
3538 4074 6.887545 TCCTGGATGAACAATTAAACCGTTAT 59.112 34.615 0.00 0.00 0.00 1.89
3539 4075 6.239396 TCCTGGATGAACAATTAAACCGTTA 58.761 36.000 0.00 0.00 0.00 3.18
3540 4076 5.074115 TCCTGGATGAACAATTAAACCGTT 58.926 37.500 0.00 0.00 0.00 4.44
3640 4179 2.236395 AGTTGTGTAATTCTCCCCCTCG 59.764 50.000 0.00 0.00 0.00 4.63
3877 4452 4.728772 TCAACCATCTTGAGTTGGAACAT 58.271 39.130 13.61 0.00 42.87 2.71
4010 4636 7.290813 ACCCAGTTCTTCTTCTTATGAGTTTT 58.709 34.615 0.00 0.00 0.00 2.43
4012 4638 6.441088 ACCCAGTTCTTCTTCTTATGAGTT 57.559 37.500 0.00 0.00 0.00 3.01
4014 4640 6.467677 TGAACCCAGTTCTTCTTCTTATGAG 58.532 40.000 8.77 0.00 42.39 2.90
4015 4641 6.270000 TCTGAACCCAGTTCTTCTTCTTATGA 59.730 38.462 8.77 0.00 42.39 2.15
4016 4642 6.467677 TCTGAACCCAGTTCTTCTTCTTATG 58.532 40.000 8.77 0.00 42.39 1.90
4017 4643 6.688073 TCTGAACCCAGTTCTTCTTCTTAT 57.312 37.500 8.77 0.00 42.39 1.73
4018 4644 6.494666 TTCTGAACCCAGTTCTTCTTCTTA 57.505 37.500 8.77 0.00 42.39 2.10
4019 4645 5.373812 TTCTGAACCCAGTTCTTCTTCTT 57.626 39.130 8.77 0.00 42.39 2.52
4020 4646 5.312079 CATTCTGAACCCAGTTCTTCTTCT 58.688 41.667 8.77 0.00 42.39 2.85
4021 4647 4.457257 CCATTCTGAACCCAGTTCTTCTTC 59.543 45.833 8.77 0.00 42.39 2.87
4087 4843 6.258230 TGAGTGTTGGATGATGAAACAATC 57.742 37.500 7.93 7.93 44.74 2.67
4163 4924 6.445357 TCAGTGACGAAACAGCATACTATA 57.555 37.500 0.00 0.00 0.00 1.31
4164 4925 5.324784 TCAGTGACGAAACAGCATACTAT 57.675 39.130 0.00 0.00 0.00 2.12
4165 4926 4.776795 TCAGTGACGAAACAGCATACTA 57.223 40.909 0.00 0.00 0.00 1.82
4166 4927 3.660501 TCAGTGACGAAACAGCATACT 57.339 42.857 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.