Multiple sequence alignment - TraesCS2B01G164200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G164200 chr2B 100.000 3350 0 0 1 3350 136428596 136431945 0.000000e+00 6187.0
1 TraesCS2B01G164200 chr2D 94.249 2643 100 19 729 3350 84340872 84343483 0.000000e+00 3991.0
2 TraesCS2B01G164200 chr2D 78.210 257 33 10 357 599 356526150 356526397 3.480000e-30 143.0
3 TraesCS2B01G164200 chr2D 90.909 44 3 1 612 654 521506351 521506308 1.300000e-04 58.4
4 TraesCS2B01G164200 chr2A 91.198 2363 128 26 724 3069 85287581 85289880 0.000000e+00 3138.0
5 TraesCS2B01G164200 chr2A 87.188 320 41 0 1 320 85286831 85287150 6.830000e-97 364.0
6 TraesCS2B01G164200 chr2A 88.265 196 8 5 3156 3350 85289924 85290105 1.560000e-53 220.0
7 TraesCS2B01G164200 chr2A 95.050 101 5 0 615 715 85287153 85287253 3.460000e-35 159.0
8 TraesCS2B01G164200 chr2A 76.094 297 47 15 357 639 477002329 477002615 2.100000e-27 134.0
9 TraesCS2B01G164200 chr2A 100.000 29 0 0 11 39 508000491 508000463 2.000000e-03 54.7
10 TraesCS2B01G164200 chr7D 85.603 639 86 6 5 641 109316952 109317586 0.000000e+00 665.0
11 TraesCS2B01G164200 chr7A 83.750 640 98 5 5 641 115265264 115265900 4.780000e-168 601.0
12 TraesCS2B01G164200 chr7A 100.000 31 0 0 612 642 209688044 209688014 1.300000e-04 58.4
13 TraesCS2B01G164200 chr7B 83.887 602 87 5 4 599 68551157 68551754 1.740000e-157 566.0
14 TraesCS2B01G164200 chr7B 78.205 156 31 3 490 643 604366225 604366071 2.750000e-16 97.1
15 TraesCS2B01G164200 chr3B 79.422 277 45 8 366 639 52798417 52798684 5.710000e-43 185.0
16 TraesCS2B01G164200 chr5D 79.825 114 19 3 529 639 543255451 543255339 2.770000e-11 80.5
17 TraesCS2B01G164200 chr4A 77.451 102 19 4 10 109 625976260 625976359 1.300000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G164200 chr2B 136428596 136431945 3349 False 6187.00 6187 100.00000 1 3350 1 chr2B.!!$F1 3349
1 TraesCS2B01G164200 chr2D 84340872 84343483 2611 False 3991.00 3991 94.24900 729 3350 1 chr2D.!!$F1 2621
2 TraesCS2B01G164200 chr2A 85286831 85290105 3274 False 970.25 3138 90.42525 1 3350 4 chr2A.!!$F2 3349
3 TraesCS2B01G164200 chr7D 109316952 109317586 634 False 665.00 665 85.60300 5 641 1 chr7D.!!$F1 636
4 TraesCS2B01G164200 chr7A 115265264 115265900 636 False 601.00 601 83.75000 5 641 1 chr7A.!!$F1 636
5 TraesCS2B01G164200 chr7B 68551157 68551754 597 False 566.00 566 83.88700 4 599 1 chr7B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 1207 0.110486 AAGTCGCAAGTGGAACCCAT 59.890 50.0 0.0 0.0 37.8 4.00 F
1811 2152 0.037447 GAGCCAGCAAAAGAGGAGGT 59.963 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 2555 0.043183 TCTTCTCCTCATGCTCCCCA 59.957 55.0 0.00 0.0 0.00 4.96 R
3120 3493 1.340088 AAAATGCCAGCATGACCACA 58.660 45.0 5.78 0.0 39.69 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 1.376543 CTGCACCGCATCTTTGATCT 58.623 50.000 0.00 0.00 38.13 2.75
117 118 1.742761 CATCTTTGATCTGGCGGTGT 58.257 50.000 0.00 0.00 0.00 4.16
152 153 1.298157 CCGAGCATGCTTGGTTCGAA 61.298 55.000 36.87 0.00 41.59 3.71
305 315 1.452651 CGGCTCCAGTGATGGCAAT 60.453 57.895 0.00 0.00 0.00 3.56
327 337 7.270779 CAATGATGAAGATGAGTAGAACTCCA 58.729 38.462 4.69 0.00 44.44 3.86
334 344 5.765510 AGATGAGTAGAACTCCAGTGATCT 58.234 41.667 4.69 3.51 44.44 2.75
408 418 5.125356 TCTATCAAATGGTGTGCTATGTGG 58.875 41.667 0.00 0.00 0.00 4.17
467 477 9.035607 GTATGTGATGAACTATACTTGTGGAAG 57.964 37.037 0.00 0.00 35.07 3.46
471 481 7.220300 GTGATGAACTATACTTGTGGAAGTACG 59.780 40.741 0.00 0.00 45.44 3.67
475 485 5.589192 ACTATACTTGTGGAAGTACGATGC 58.411 41.667 0.00 0.00 45.44 3.91
511 521 6.521133 GCGAACTAGATGTTTCAAATCAAGTG 59.479 38.462 0.00 0.00 39.30 3.16
516 526 9.342308 ACTAGATGTTTCAAATCAAGTGAGAAA 57.658 29.630 0.00 0.00 0.00 2.52
533 544 6.425721 AGTGAGAAAATCCGACGAAATTTACA 59.574 34.615 0.00 2.27 0.00 2.41
545 556 7.096023 CCGACGAAATTTACAGGATCTATTCTG 60.096 40.741 0.00 0.00 37.07 3.02
557 568 0.387367 CTATTCTGCCGATCCGTCCG 60.387 60.000 0.00 0.00 0.00 4.79
601 614 3.488310 CGGGATACTGTAAACGAAATCCG 59.512 47.826 0.00 0.00 40.67 4.18
605 618 3.034721 ACTGTAAACGAAATCCGCAGA 57.965 42.857 0.00 0.00 43.32 4.26
607 620 3.810941 ACTGTAAACGAAATCCGCAGAAA 59.189 39.130 0.00 0.00 43.32 2.52
610 623 1.892209 AACGAAATCCGCAGAAAGGT 58.108 45.000 0.00 0.00 43.32 3.50
662 677 2.039746 TCTCATCCCATTGGACACGTTT 59.960 45.455 3.62 0.00 45.58 3.60
715 730 4.935205 TGTTCTTCGATGAAATGTGTAGGG 59.065 41.667 14.62 0.00 0.00 3.53
716 731 4.137116 TCTTCGATGAAATGTGTAGGGG 57.863 45.455 0.00 0.00 0.00 4.79
717 732 3.772572 TCTTCGATGAAATGTGTAGGGGA 59.227 43.478 0.00 0.00 0.00 4.81
718 733 3.536956 TCGATGAAATGTGTAGGGGAC 57.463 47.619 0.00 0.00 0.00 4.46
720 735 3.132289 TCGATGAAATGTGTAGGGGACTC 59.868 47.826 0.00 0.00 43.67 3.36
721 736 3.741388 CGATGAAATGTGTAGGGGACTCC 60.741 52.174 0.00 0.00 43.67 3.85
769 1103 3.030168 ATGCGTGCCATTCGGGAGA 62.030 57.895 0.00 0.00 40.01 3.71
814 1148 0.816018 ACGGAACCACATTCGTGCAA 60.816 50.000 0.00 0.00 42.17 4.08
827 1161 2.203480 TGCAACCCAGCCCAAGAC 60.203 61.111 0.00 0.00 0.00 3.01
828 1162 2.203480 GCAACCCAGCCCAAGACA 60.203 61.111 0.00 0.00 0.00 3.41
829 1163 1.607467 GCAACCCAGCCCAAGACAT 60.607 57.895 0.00 0.00 0.00 3.06
830 1164 1.598701 GCAACCCAGCCCAAGACATC 61.599 60.000 0.00 0.00 0.00 3.06
867 1201 1.436195 GCACACAAGTCGCAAGTGGA 61.436 55.000 0.00 0.00 37.58 4.02
871 1205 0.818040 ACAAGTCGCAAGTGGAACCC 60.818 55.000 0.00 0.00 37.80 4.11
872 1206 0.817634 CAAGTCGCAAGTGGAACCCA 60.818 55.000 0.00 0.00 37.80 4.51
873 1207 0.110486 AAGTCGCAAGTGGAACCCAT 59.890 50.000 0.00 0.00 37.80 4.00
874 1208 0.321653 AGTCGCAAGTGGAACCCATC 60.322 55.000 0.00 0.00 37.80 3.51
875 1209 1.375396 TCGCAAGTGGAACCCATCG 60.375 57.895 0.00 0.00 37.80 3.84
877 1211 2.700773 GCAAGTGGAACCCATCGCC 61.701 63.158 0.00 0.00 37.80 5.54
880 1214 3.728373 GTGGAACCCATCGCCCCT 61.728 66.667 0.00 0.00 35.28 4.79
882 1216 4.191015 GGAACCCATCGCCCCTCC 62.191 72.222 0.00 0.00 0.00 4.30
883 1217 4.191015 GAACCCATCGCCCCTCCC 62.191 72.222 0.00 0.00 0.00 4.30
1584 1925 2.352915 GACGAGATCGAGGCGCTG 60.353 66.667 7.64 0.00 43.02 5.18
1689 2030 1.225376 TTTACCGCGTCCACAAGCTG 61.225 55.000 4.92 0.00 0.00 4.24
1811 2152 0.037447 GAGCCAGCAAAAGAGGAGGT 59.963 55.000 0.00 0.00 0.00 3.85
1827 2168 2.334946 GGTGATCAAGCAAGCGCCA 61.335 57.895 2.29 0.00 39.83 5.69
1883 2224 5.574970 AGAGAAAATGAGAAACTGGAGGT 57.425 39.130 0.00 0.00 0.00 3.85
1886 2227 5.249420 AGAAAATGAGAAACTGGAGGTAGC 58.751 41.667 0.00 0.00 0.00 3.58
1986 2327 1.688772 TCGGTAGCTCTATGGTGGTC 58.311 55.000 0.00 0.00 0.00 4.02
2034 2378 6.088173 TGCATCGAAATTGAATGTTGAAGAG 58.912 36.000 0.00 0.00 0.00 2.85
2046 2390 6.543465 TGAATGTTGAAGAGTCAAGTGACAAT 59.457 34.615 13.66 0.00 44.44 2.71
2075 2419 3.529533 CTGCTGAGGAACCACATTCTAG 58.470 50.000 0.00 0.00 37.48 2.43
2110 2454 3.458118 TGAGGTGAAAGAAGGGACAAAGA 59.542 43.478 0.00 0.00 0.00 2.52
2142 2486 1.268352 GACTCGAGCAAGGATAGCGAT 59.732 52.381 13.61 0.00 37.01 4.58
2187 2531 1.076632 AGCGACCGAGGAGGATCTT 60.077 57.895 0.00 0.00 45.00 2.40
2211 2555 2.752030 TGGGACGAGATTGAGGATCTT 58.248 47.619 0.00 0.00 45.17 2.40
2238 2582 2.476199 CATGAGGAGAAGAAGGGGAGT 58.524 52.381 0.00 0.00 0.00 3.85
2286 2630 1.335496 GAGGAGCTACGTAAGAGGCTG 59.665 57.143 11.34 0.00 44.91 4.85
2515 2862 6.849085 TGATGTTATAAAGTGGCATTTGGT 57.151 33.333 0.00 0.00 0.00 3.67
2533 2880 8.199176 CATTTGGTAATGCATCAATTTGCTAA 57.801 30.769 0.00 0.00 43.18 3.09
2713 3070 4.519540 TTTGTATCCTCTTGGCTTTTGC 57.480 40.909 0.00 0.00 46.64 3.68
2719 3076 2.371841 TCCTCTTGGCTTTTGCTAGTCA 59.628 45.455 0.00 0.00 46.54 3.41
2742 3099 7.273381 GTCAAATAATGTGCATGAGTTTGTACC 59.727 37.037 0.00 0.00 31.98 3.34
2754 3111 6.019779 TGAGTTTGTACCACATAAATTGGC 57.980 37.500 0.00 0.00 37.69 4.52
2762 3119 3.118811 ACCACATAAATTGGCATTTCCCG 60.119 43.478 0.00 0.00 37.69 5.14
2821 3179 5.707242 TTCTCCAATAGTAGCGGATACAG 57.293 43.478 6.16 0.00 36.79 2.74
2831 3189 1.344763 AGCGGATACAGATTAGTGCCC 59.655 52.381 0.00 0.00 0.00 5.36
2848 3206 1.609320 GCCCTGAGAGTTGAGACAACC 60.609 57.143 10.38 3.78 0.00 3.77
2862 3220 1.461127 GACAACCGTGACAGCTCAATC 59.539 52.381 0.00 0.00 0.00 2.67
2949 3311 7.113658 TCATCCATGAGTAGTTCTAACTTCC 57.886 40.000 0.00 0.00 35.09 3.46
2985 3347 4.353777 ACTCCACATTAGACCAGAGCTTA 58.646 43.478 0.00 0.00 0.00 3.09
3073 3446 4.224370 AGAGGCTACGGTATTCTTTTCCAA 59.776 41.667 0.00 0.00 0.00 3.53
3193 3569 3.674997 TGGACAGTTTTATGAGGTCTGC 58.325 45.455 0.00 0.00 0.00 4.26
3288 3665 7.751047 GTACGATTGTACTAACATCACATGT 57.249 36.000 14.99 0.00 46.07 3.21
3289 3666 8.845942 GTACGATTGTACTAACATCACATGTA 57.154 34.615 14.99 0.00 46.07 2.29
3290 3667 7.751047 ACGATTGTACTAACATCACATGTAC 57.249 36.000 0.00 0.00 44.07 2.90
3291 3668 7.317390 ACGATTGTACTAACATCACATGTACA 58.683 34.615 0.00 0.00 44.07 2.90
3292 3669 7.488150 ACGATTGTACTAACATCACATGTACAG 59.512 37.037 0.00 0.00 44.07 2.74
3293 3670 7.488150 CGATTGTACTAACATCACATGTACAGT 59.512 37.037 0.00 0.00 44.07 3.55
3294 3671 9.797556 GATTGTACTAACATCACATGTACAGTA 57.202 33.333 0.00 6.82 44.07 2.74
3296 3673 7.660735 GTACTAACATCACATGTACAGTACG 57.339 40.000 17.29 0.00 43.79 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.604578 GTTCACCCATGTGCATGCTT 59.395 50.000 20.33 0.46 42.46 3.91
84 85 2.672996 GATGCGGTGCAGGTGGTT 60.673 61.111 0.00 0.00 43.65 3.67
88 89 0.322816 ATCAAAGATGCGGTGCAGGT 60.323 50.000 0.00 0.00 43.65 4.00
117 118 2.185867 GGTCGCTCGGTGGCATTA 59.814 61.111 0.00 0.00 0.00 1.90
124 125 4.498520 CATGCTCGGTCGCTCGGT 62.499 66.667 0.00 0.00 0.00 4.69
178 179 3.854459 GCGCTGCTACGGCTTCAC 61.854 66.667 0.00 0.00 39.59 3.18
211 212 1.820481 GCGAGCTCGTACTCCTCCT 60.820 63.158 34.46 0.00 42.22 3.69
231 234 0.545309 AGGGAGTTGCAGAGCACCTA 60.545 55.000 0.00 0.00 38.71 3.08
294 304 4.788679 TCATCTTCATCATTGCCATCACT 58.211 39.130 0.00 0.00 0.00 3.41
305 315 5.954752 ACTGGAGTTCTACTCATCTTCATCA 59.045 40.000 8.89 0.00 46.79 3.07
327 337 9.978044 AAAACTTAAACGACTAGTTAGATCACT 57.022 29.630 0.00 0.00 43.37 3.41
440 450 8.073467 TCCACAAGTATAGTTCATCACATACA 57.927 34.615 0.00 0.00 0.00 2.29
467 477 1.409412 CGCCATAGACAGCATCGTAC 58.591 55.000 0.00 0.00 0.00 3.67
471 481 0.875908 TTCGCGCCATAGACAGCATC 60.876 55.000 0.00 0.00 0.00 3.91
475 485 1.333931 TCTAGTTCGCGCCATAGACAG 59.666 52.381 0.00 0.00 0.00 3.51
511 521 6.091713 TCCTGTAAATTTCGTCGGATTTTCTC 59.908 38.462 11.06 2.66 0.00 2.87
516 526 5.671493 AGATCCTGTAAATTTCGTCGGATT 58.329 37.500 0.00 0.00 30.45 3.01
599 612 1.805120 CGGTATACCACCTTTCTGCGG 60.805 57.143 21.76 0.00 46.19 5.69
601 614 1.483415 TCCGGTATACCACCTTTCTGC 59.517 52.381 21.76 0.00 46.19 4.26
605 618 2.104281 GCAGATCCGGTATACCACCTTT 59.896 50.000 21.76 1.30 46.19 3.11
607 620 1.133136 AGCAGATCCGGTATACCACCT 60.133 52.381 21.76 9.21 46.19 4.00
610 623 3.329814 TCTCTAGCAGATCCGGTATACCA 59.670 47.826 21.76 3.43 35.14 3.25
715 730 2.035961 GGGCTTTCAAGTTTTGGAGTCC 59.964 50.000 0.73 0.73 33.94 3.85
716 731 2.287608 CGGGCTTTCAAGTTTTGGAGTC 60.288 50.000 0.00 0.00 0.00 3.36
717 732 1.681264 CGGGCTTTCAAGTTTTGGAGT 59.319 47.619 0.00 0.00 0.00 3.85
718 733 1.953686 TCGGGCTTTCAAGTTTTGGAG 59.046 47.619 0.00 0.00 0.00 3.86
720 735 2.863740 GTTTCGGGCTTTCAAGTTTTGG 59.136 45.455 0.00 0.00 0.00 3.28
721 736 3.551485 CAGTTTCGGGCTTTCAAGTTTTG 59.449 43.478 0.00 0.00 0.00 2.44
769 1103 3.894547 ATCGCAGGTTTCCGCGGTT 62.895 57.895 27.15 3.97 42.90 4.44
770 1104 4.388499 ATCGCAGGTTTCCGCGGT 62.388 61.111 27.15 1.01 42.90 5.68
771 1105 3.864686 CATCGCAGGTTTCCGCGG 61.865 66.667 22.12 22.12 42.90 6.46
772 1106 4.520846 GCATCGCAGGTTTCCGCG 62.521 66.667 0.00 0.00 43.57 6.46
773 1107 3.430862 TGCATCGCAGGTTTCCGC 61.431 61.111 0.00 0.00 33.32 5.54
774 1108 2.480555 GTGCATCGCAGGTTTCCG 59.519 61.111 0.00 0.00 40.08 4.30
775 1109 1.573829 TTCGTGCATCGCAGGTTTCC 61.574 55.000 8.35 0.00 43.65 3.13
776 1110 0.237235 TTTCGTGCATCGCAGGTTTC 59.763 50.000 8.35 0.00 43.65 2.78
777 1111 0.040425 GTTTCGTGCATCGCAGGTTT 60.040 50.000 8.35 0.00 43.65 3.27
814 1148 1.217057 ATGGATGTCTTGGGCTGGGT 61.217 55.000 0.00 0.00 0.00 4.51
827 1161 2.111878 GCACGGGAGGGATGGATG 59.888 66.667 0.00 0.00 32.31 3.51
828 1162 2.366837 TGCACGGGAGGGATGGAT 60.367 61.111 0.00 0.00 32.31 3.41
829 1163 3.399181 GTGCACGGGAGGGATGGA 61.399 66.667 0.00 0.00 32.31 3.41
830 1164 3.687321 CTGTGCACGGGAGGGATGG 62.687 68.421 18.43 0.00 32.31 3.51
975 1310 2.244651 CGGCGATTTGGATCCGGTC 61.245 63.158 7.39 4.08 38.35 4.79
999 1334 3.311048 GCGAGTTGAAGAGGAAATCCATC 59.689 47.826 1.67 0.00 38.89 3.51
1650 1991 1.375523 GTACCTGGCCCAGAACACG 60.376 63.158 13.74 0.00 32.44 4.49
1689 2030 2.817396 GCGTCCTCCTGCTGCTTC 60.817 66.667 0.00 0.00 0.00 3.86
1811 2152 0.452987 GATTGGCGCTTGCTTGATCA 59.547 50.000 7.64 0.00 39.13 2.92
1827 2168 5.130350 TCAGGTTTCGGTTCTTCTTTGATT 58.870 37.500 0.00 0.00 0.00 2.57
1883 2224 0.614812 TGCATTGACTCTGCCTGCTA 59.385 50.000 0.00 0.00 38.89 3.49
1886 2227 1.199327 CAACTGCATTGACTCTGCCTG 59.801 52.381 0.00 0.00 41.23 4.85
1986 2327 0.171455 CCTTCTCCTCCTTGTCGACG 59.829 60.000 11.62 0.00 0.00 5.12
2034 2378 4.676924 GCAGCAGTTTTATTGTCACTTGAC 59.323 41.667 2.19 2.19 44.97 3.18
2046 2390 2.158682 TGGTTCCTCAGCAGCAGTTTTA 60.159 45.455 0.00 0.00 0.00 1.52
2075 2419 0.743701 CACCTCAGCATCTCCAGTGC 60.744 60.000 0.00 0.00 42.81 4.40
2090 2434 4.519906 TTCTTTGTCCCTTCTTTCACCT 57.480 40.909 0.00 0.00 0.00 4.00
2110 2454 2.297315 TGCTCGAGTCACTTGTCTCATT 59.703 45.455 15.13 0.00 31.92 2.57
2142 2486 3.447586 GCTGTCTAGACACCATGGAGTAA 59.552 47.826 21.74 7.70 36.21 2.24
2187 2531 2.466846 TCCTCAATCTCGTCCCATTCA 58.533 47.619 0.00 0.00 0.00 2.57
2211 2555 0.043183 TCTTCTCCTCATGCTCCCCA 59.957 55.000 0.00 0.00 0.00 4.96
2286 2630 0.778815 CGTCGTCTTCTGCAACACTC 59.221 55.000 0.00 0.00 0.00 3.51
2451 2798 2.637947 TCCATAACATAAGCAGCGCAA 58.362 42.857 11.47 0.00 0.00 4.85
2713 3070 8.239314 ACAAACTCATGCACATTATTTGACTAG 58.761 33.333 15.31 0.00 31.59 2.57
2719 3076 7.090173 GTGGTACAAACTCATGCACATTATTT 58.910 34.615 0.00 0.00 44.16 1.40
2742 3099 4.111916 GACGGGAAATGCCAATTTATGTG 58.888 43.478 0.00 0.00 36.10 3.21
2754 3111 4.697514 ACATAGATCAGTGACGGGAAATG 58.302 43.478 0.00 0.00 0.00 2.32
2762 3119 6.615264 ATGCATGAAACATAGATCAGTGAC 57.385 37.500 0.00 0.00 0.00 3.67
2821 3179 3.449018 TCTCAACTCTCAGGGCACTAATC 59.551 47.826 0.00 0.00 0.00 1.75
2831 3189 2.034685 TCACGGTTGTCTCAACTCTCAG 59.965 50.000 11.48 3.22 0.00 3.35
2848 3206 5.890110 AATAATACGATTGAGCTGTCACG 57.110 39.130 0.00 0.00 30.10 4.35
2928 3289 6.497259 AGTTGGAAGTTAGAACTACTCATGGA 59.503 38.462 0.00 0.00 38.57 3.41
2985 3347 4.201950 GGCATTGTCAAGAGCATACGAAAT 60.202 41.667 13.01 0.00 0.00 2.17
3105 3478 6.646240 GCATGACCACAAACATTACTTCATTT 59.354 34.615 0.00 0.00 0.00 2.32
3120 3493 1.340088 AAAATGCCAGCATGACCACA 58.660 45.000 5.78 0.00 39.69 4.17
3142 3515 5.639757 CAATTCGAATTGCCAACATGACTA 58.360 37.500 31.60 0.00 39.29 2.59
3159 3535 3.837213 ACTGTCCAGAAATGCAATTCG 57.163 42.857 8.82 4.46 33.67 3.34
3282 3659 7.577668 CGCAATTTAATACGTACTGTACATGTG 59.422 37.037 17.35 4.21 35.44 3.21
3283 3660 7.254185 CCGCAATTTAATACGTACTGTACATGT 60.254 37.037 17.35 2.69 35.44 3.21
3284 3661 7.043258 TCCGCAATTTAATACGTACTGTACATG 60.043 37.037 17.35 5.22 35.44 3.21
3286 3663 6.328714 TCCGCAATTTAATACGTACTGTACA 58.671 36.000 17.35 0.00 35.44 2.90
3287 3664 6.810888 TCCGCAATTTAATACGTACTGTAC 57.189 37.500 7.90 7.90 35.44 2.90
3288 3665 7.201835 TGATCCGCAATTTAATACGTACTGTA 58.798 34.615 0.00 0.00 37.49 2.74
3289 3666 6.044046 TGATCCGCAATTTAATACGTACTGT 58.956 36.000 0.00 0.00 0.00 3.55
3290 3667 6.519353 TGATCCGCAATTTAATACGTACTG 57.481 37.500 0.00 0.00 0.00 2.74
3291 3668 6.535865 TGTTGATCCGCAATTTAATACGTACT 59.464 34.615 0.00 0.00 39.03 2.73
3292 3669 6.707711 TGTTGATCCGCAATTTAATACGTAC 58.292 36.000 0.00 0.00 39.03 3.67
3293 3670 6.905544 TGTTGATCCGCAATTTAATACGTA 57.094 33.333 0.00 0.00 39.03 3.57
3294 3671 5.804692 TGTTGATCCGCAATTTAATACGT 57.195 34.783 0.00 0.00 39.03 3.57
3295 3672 6.658831 AGATGTTGATCCGCAATTTAATACG 58.341 36.000 0.00 0.00 39.03 3.06
3296 3673 8.745837 CAAAGATGTTGATCCGCAATTTAATAC 58.254 33.333 0.00 0.00 39.03 1.89
3302 3679 5.585390 GATCAAAGATGTTGATCCGCAATT 58.415 37.500 15.19 0.00 45.46 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.