Multiple sequence alignment - TraesCS2B01G162800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G162800 | chr2B | 100.000 | 3218 | 0 | 0 | 1 | 3218 | 135357085 | 135360302 | 0.000000e+00 | 5943.0 |
1 | TraesCS2B01G162800 | chr2B | 91.153 | 2611 | 154 | 44 | 511 | 3074 | 135197667 | 135200247 | 0.000000e+00 | 3470.0 |
2 | TraesCS2B01G162800 | chr2B | 91.178 | 2437 | 142 | 37 | 736 | 3137 | 182153466 | 182151068 | 0.000000e+00 | 3241.0 |
3 | TraesCS2B01G162800 | chr2B | 89.340 | 2167 | 132 | 57 | 714 | 2832 | 135463498 | 135465613 | 0.000000e+00 | 2630.0 |
4 | TraesCS2B01G162800 | chr2B | 87.563 | 2171 | 143 | 61 | 704 | 2834 | 135126538 | 135128621 | 0.000000e+00 | 2396.0 |
5 | TraesCS2B01G162800 | chr2B | 89.809 | 1727 | 140 | 20 | 887 | 2598 | 137814510 | 137812805 | 0.000000e+00 | 2182.0 |
6 | TraesCS2B01G162800 | chr2B | 89.860 | 1716 | 137 | 24 | 896 | 2598 | 137349335 | 137347644 | 0.000000e+00 | 2170.0 |
7 | TraesCS2B01G162800 | chr2B | 89.844 | 256 | 19 | 1 | 2889 | 3137 | 135515489 | 135515744 | 4.000000e-84 | 322.0 |
8 | TraesCS2B01G162800 | chr2B | 98.413 | 63 | 1 | 0 | 3156 | 3218 | 182151081 | 182151019 | 9.440000e-21 | 111.0 |
9 | TraesCS2B01G162800 | chr2B | 89.231 | 65 | 6 | 1 | 722 | 785 | 135238904 | 135238968 | 2.660000e-11 | 80.5 |
10 | TraesCS2B01G162800 | chr2D | 93.178 | 2448 | 114 | 24 | 715 | 3137 | 83225052 | 83227471 | 0.000000e+00 | 3546.0 |
11 | TraesCS2B01G162800 | chr2D | 90.990 | 2464 | 144 | 38 | 715 | 3137 | 83188233 | 83190659 | 0.000000e+00 | 3249.0 |
12 | TraesCS2B01G162800 | chr2D | 92.323 | 2006 | 97 | 19 | 750 | 2740 | 83529794 | 83531757 | 0.000000e+00 | 2798.0 |
13 | TraesCS2B01G162800 | chr2D | 90.095 | 1999 | 123 | 29 | 868 | 2848 | 127821397 | 127819456 | 0.000000e+00 | 2525.0 |
14 | TraesCS2B01G162800 | chr2D | 87.800 | 459 | 27 | 13 | 1 | 432 | 83529146 | 83529602 | 7.960000e-141 | 510.0 |
15 | TraesCS2B01G162800 | chr2D | 85.644 | 202 | 19 | 7 | 511 | 707 | 83529598 | 83529794 | 1.510000e-48 | 204.0 |
16 | TraesCS2B01G162800 | chr2D | 92.045 | 88 | 7 | 0 | 427 | 514 | 512165927 | 512165840 | 1.210000e-24 | 124.0 |
17 | TraesCS2B01G162800 | chr2D | 98.413 | 63 | 1 | 0 | 3156 | 3218 | 83190646 | 83190708 | 9.440000e-21 | 111.0 |
18 | TraesCS2B01G162800 | chr2D | 96.875 | 64 | 1 | 1 | 3156 | 3218 | 83227458 | 83227521 | 4.390000e-19 | 106.0 |
19 | TraesCS2B01G162800 | chr2A | 91.313 | 2072 | 131 | 28 | 865 | 2921 | 83984965 | 83987002 | 0.000000e+00 | 2784.0 |
20 | TraesCS2B01G162800 | chr2A | 89.775 | 2044 | 146 | 29 | 868 | 2892 | 134867511 | 134865512 | 0.000000e+00 | 2558.0 |
21 | TraesCS2B01G162800 | chr2A | 87.460 | 2201 | 147 | 67 | 656 | 2832 | 84143431 | 84145526 | 0.000000e+00 | 2416.0 |
22 | TraesCS2B01G162800 | chr2A | 86.775 | 2155 | 166 | 57 | 704 | 2835 | 83989970 | 83992028 | 0.000000e+00 | 2290.0 |
23 | TraesCS2B01G162800 | chr2A | 91.932 | 1066 | 68 | 9 | 1535 | 2598 | 84228932 | 84229981 | 0.000000e+00 | 1476.0 |
24 | TraesCS2B01G162800 | chr2A | 89.347 | 291 | 21 | 7 | 1 | 290 | 84116105 | 84116386 | 1.100000e-94 | 357.0 |
25 | TraesCS2B01G162800 | chr2A | 90.310 | 258 | 18 | 1 | 2873 | 3123 | 83992267 | 83992524 | 6.650000e-87 | 331.0 |
26 | TraesCS2B01G162800 | chr2A | 91.257 | 183 | 12 | 1 | 2955 | 3137 | 83987003 | 83987181 | 2.480000e-61 | 246.0 |
27 | TraesCS2B01G162800 | chr2A | 94.521 | 146 | 8 | 0 | 286 | 431 | 84141725 | 84141870 | 3.230000e-55 | 226.0 |
28 | TraesCS2B01G162800 | chr2A | 91.083 | 157 | 11 | 3 | 511 | 664 | 84141870 | 84142026 | 3.250000e-50 | 209.0 |
29 | TraesCS2B01G162800 | chr2A | 90.517 | 116 | 6 | 2 | 2580 | 2691 | 84231276 | 84231390 | 7.190000e-32 | 148.0 |
30 | TraesCS2B01G162800 | chr2A | 98.413 | 63 | 1 | 0 | 3156 | 3218 | 83987168 | 83987230 | 9.440000e-21 | 111.0 |
31 | TraesCS2B01G162800 | chrUn | 89.022 | 1339 | 93 | 17 | 511 | 1841 | 25420038 | 25418746 | 0.000000e+00 | 1609.0 |
32 | TraesCS2B01G162800 | chrUn | 89.594 | 788 | 57 | 13 | 2366 | 3137 | 25418011 | 25417233 | 0.000000e+00 | 977.0 |
33 | TraesCS2B01G162800 | chrUn | 93.779 | 434 | 23 | 2 | 1 | 432 | 25420465 | 25420034 | 0.000000e+00 | 649.0 |
34 | TraesCS2B01G162800 | chrUn | 86.957 | 92 | 12 | 0 | 423 | 514 | 42479331 | 42479240 | 1.580000e-18 | 104.0 |
35 | TraesCS2B01G162800 | chrUn | 93.750 | 64 | 3 | 1 | 3156 | 3218 | 25417246 | 25417183 | 9.500000e-16 | 95.3 |
36 | TraesCS2B01G162800 | chr5B | 87.822 | 1125 | 104 | 17 | 896 | 2012 | 321478256 | 321477157 | 0.000000e+00 | 1288.0 |
37 | TraesCS2B01G162800 | chr7D | 89.362 | 94 | 10 | 0 | 430 | 523 | 221683482 | 221683575 | 5.640000e-23 | 119.0 |
38 | TraesCS2B01G162800 | chr7B | 86.275 | 102 | 13 | 1 | 416 | 516 | 684403208 | 684403309 | 3.390000e-20 | 110.0 |
39 | TraesCS2B01G162800 | chr7B | 88.372 | 86 | 10 | 0 | 429 | 514 | 428965844 | 428965929 | 1.580000e-18 | 104.0 |
40 | TraesCS2B01G162800 | chr6D | 88.636 | 88 | 10 | 0 | 427 | 514 | 190909272 | 190909359 | 1.220000e-19 | 108.0 |
41 | TraesCS2B01G162800 | chr5D | 88.506 | 87 | 8 | 1 | 430 | 514 | 535136260 | 535136174 | 1.580000e-18 | 104.0 |
42 | TraesCS2B01G162800 | chr3A | 88.372 | 86 | 10 | 0 | 429 | 514 | 507291489 | 507291574 | 1.580000e-18 | 104.0 |
43 | TraesCS2B01G162800 | chr3D | 87.500 | 88 | 11 | 0 | 428 | 515 | 526192469 | 526192556 | 5.680000e-18 | 102.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G162800 | chr2B | 135357085 | 135360302 | 3217 | False | 5943.000000 | 5943 | 100.000000 | 1 | 3218 | 1 | chr2B.!!$F4 | 3217 |
1 | TraesCS2B01G162800 | chr2B | 135197667 | 135200247 | 2580 | False | 3470.000000 | 3470 | 91.153000 | 511 | 3074 | 1 | chr2B.!!$F2 | 2563 |
2 | TraesCS2B01G162800 | chr2B | 135463498 | 135465613 | 2115 | False | 2630.000000 | 2630 | 89.340000 | 714 | 2832 | 1 | chr2B.!!$F5 | 2118 |
3 | TraesCS2B01G162800 | chr2B | 135126538 | 135128621 | 2083 | False | 2396.000000 | 2396 | 87.563000 | 704 | 2834 | 1 | chr2B.!!$F1 | 2130 |
4 | TraesCS2B01G162800 | chr2B | 137812805 | 137814510 | 1705 | True | 2182.000000 | 2182 | 89.809000 | 887 | 2598 | 1 | chr2B.!!$R2 | 1711 |
5 | TraesCS2B01G162800 | chr2B | 137347644 | 137349335 | 1691 | True | 2170.000000 | 2170 | 89.860000 | 896 | 2598 | 1 | chr2B.!!$R1 | 1702 |
6 | TraesCS2B01G162800 | chr2B | 182151019 | 182153466 | 2447 | True | 1676.000000 | 3241 | 94.795500 | 736 | 3218 | 2 | chr2B.!!$R3 | 2482 |
7 | TraesCS2B01G162800 | chr2D | 127819456 | 127821397 | 1941 | True | 2525.000000 | 2525 | 90.095000 | 868 | 2848 | 1 | chr2D.!!$R1 | 1980 |
8 | TraesCS2B01G162800 | chr2D | 83225052 | 83227521 | 2469 | False | 1826.000000 | 3546 | 95.026500 | 715 | 3218 | 2 | chr2D.!!$F2 | 2503 |
9 | TraesCS2B01G162800 | chr2D | 83188233 | 83190708 | 2475 | False | 1680.000000 | 3249 | 94.701500 | 715 | 3218 | 2 | chr2D.!!$F1 | 2503 |
10 | TraesCS2B01G162800 | chr2D | 83529146 | 83531757 | 2611 | False | 1170.666667 | 2798 | 88.589000 | 1 | 2740 | 3 | chr2D.!!$F3 | 2739 |
11 | TraesCS2B01G162800 | chr2A | 134865512 | 134867511 | 1999 | True | 2558.000000 | 2558 | 89.775000 | 868 | 2892 | 1 | chr2A.!!$R1 | 2024 |
12 | TraesCS2B01G162800 | chr2A | 83984965 | 83992524 | 7559 | False | 1152.400000 | 2784 | 91.613600 | 704 | 3218 | 5 | chr2A.!!$F2 | 2514 |
13 | TraesCS2B01G162800 | chr2A | 84141725 | 84145526 | 3801 | False | 950.333333 | 2416 | 91.021333 | 286 | 2832 | 3 | chr2A.!!$F3 | 2546 |
14 | TraesCS2B01G162800 | chr2A | 84228932 | 84231390 | 2458 | False | 812.000000 | 1476 | 91.224500 | 1535 | 2691 | 2 | chr2A.!!$F4 | 1156 |
15 | TraesCS2B01G162800 | chrUn | 25417183 | 25420465 | 3282 | True | 832.575000 | 1609 | 91.536250 | 1 | 3218 | 4 | chrUn.!!$R2 | 3217 |
16 | TraesCS2B01G162800 | chr5B | 321477157 | 321478256 | 1099 | True | 1288.000000 | 1288 | 87.822000 | 896 | 2012 | 1 | chr5B.!!$R1 | 1116 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
942 | 2429 | 0.459585 | GCGACAGCTGGTAATCCGAA | 60.46 | 55.0 | 19.93 | 0.0 | 41.01 | 4.3 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2313 | 3834 | 0.096454 | GCGTTCTTTATTTCGCGGCT | 59.904 | 50.0 | 6.13 | 0.0 | 39.35 | 5.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
115 | 118 | 6.244552 | TCTGCAATAGAGTTCATCCTTCAT | 57.755 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
116 | 119 | 6.053650 | TCTGCAATAGAGTTCATCCTTCATG | 58.946 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
164 | 167 | 5.349061 | AATGCAATTCATTTTCTCCCTCC | 57.651 | 39.130 | 0.00 | 0.00 | 42.48 | 4.30 |
165 | 168 | 2.754552 | TGCAATTCATTTTCTCCCTCCG | 59.245 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
166 | 169 | 2.755103 | GCAATTCATTTTCTCCCTCCGT | 59.245 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
167 | 170 | 3.945285 | GCAATTCATTTTCTCCCTCCGTA | 59.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
168 | 171 | 4.580580 | GCAATTCATTTTCTCCCTCCGTAT | 59.419 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
169 | 172 | 5.067805 | GCAATTCATTTTCTCCCTCCGTATT | 59.932 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
358 | 387 | 7.003402 | AGATCTGAAGCCTGTATCTTATTCC | 57.997 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
368 | 397 | 6.461788 | GCCTGTATCTTATTCCGAACTTCTCT | 60.462 | 42.308 | 0.00 | 0.00 | 0.00 | 3.10 |
407 | 436 | 0.482446 | TCCAGTTGCTCCATTGGGTT | 59.518 | 50.000 | 2.09 | 0.00 | 34.93 | 4.11 |
434 | 463 | 9.036671 | GTCTTTCAGAAGCATATTTAGTACTCC | 57.963 | 37.037 | 0.00 | 0.00 | 32.75 | 3.85 |
435 | 464 | 8.982723 | TCTTTCAGAAGCATATTTAGTACTCCT | 58.017 | 33.333 | 0.00 | 0.00 | 32.75 | 3.69 |
436 | 465 | 9.606631 | CTTTCAGAAGCATATTTAGTACTCCTT | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
437 | 466 | 9.959721 | TTTCAGAAGCATATTTAGTACTCCTTT | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
438 | 467 | 9.959721 | TTCAGAAGCATATTTAGTACTCCTTTT | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
439 | 468 | 9.383519 | TCAGAAGCATATTTAGTACTCCTTTTG | 57.616 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
440 | 469 | 9.167311 | CAGAAGCATATTTAGTACTCCTTTTGT | 57.833 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
441 | 470 | 9.384764 | AGAAGCATATTTAGTACTCCTTTTGTC | 57.615 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
442 | 471 | 8.507524 | AAGCATATTTAGTACTCCTTTTGTCC | 57.492 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
443 | 472 | 7.054751 | AGCATATTTAGTACTCCTTTTGTCCC | 58.945 | 38.462 | 0.00 | 0.00 | 0.00 | 4.46 |
444 | 473 | 6.826741 | GCATATTTAGTACTCCTTTTGTCCCA | 59.173 | 38.462 | 0.00 | 0.00 | 0.00 | 4.37 |
445 | 474 | 7.201705 | GCATATTTAGTACTCCTTTTGTCCCAC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 4.61 |
446 | 475 | 5.633655 | TTTAGTACTCCTTTTGTCCCACA | 57.366 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
447 | 476 | 5.633655 | TTAGTACTCCTTTTGTCCCACAA | 57.366 | 39.130 | 0.00 | 0.00 | 36.11 | 3.33 |
448 | 477 | 4.724279 | AGTACTCCTTTTGTCCCACAAT | 57.276 | 40.909 | 0.00 | 0.00 | 38.00 | 2.71 |
449 | 478 | 5.836024 | AGTACTCCTTTTGTCCCACAATA | 57.164 | 39.130 | 0.00 | 0.00 | 38.00 | 1.90 |
450 | 479 | 6.388619 | AGTACTCCTTTTGTCCCACAATAT | 57.611 | 37.500 | 0.00 | 0.00 | 38.00 | 1.28 |
451 | 480 | 7.504926 | AGTACTCCTTTTGTCCCACAATATA | 57.495 | 36.000 | 0.00 | 0.00 | 38.00 | 0.86 |
452 | 481 | 7.924541 | AGTACTCCTTTTGTCCCACAATATAA | 58.075 | 34.615 | 0.00 | 0.00 | 38.00 | 0.98 |
453 | 482 | 8.047310 | AGTACTCCTTTTGTCCCACAATATAAG | 58.953 | 37.037 | 0.00 | 0.00 | 38.00 | 1.73 |
454 | 483 | 7.027874 | ACTCCTTTTGTCCCACAATATAAGA | 57.972 | 36.000 | 2.29 | 0.00 | 38.00 | 2.10 |
455 | 484 | 6.884836 | ACTCCTTTTGTCCCACAATATAAGAC | 59.115 | 38.462 | 2.29 | 0.00 | 38.00 | 3.01 |
456 | 485 | 5.878116 | TCCTTTTGTCCCACAATATAAGACG | 59.122 | 40.000 | 2.29 | 0.00 | 38.00 | 4.18 |
457 | 486 | 5.646360 | CCTTTTGTCCCACAATATAAGACGT | 59.354 | 40.000 | 0.00 | 0.00 | 38.00 | 4.34 |
458 | 487 | 6.150474 | CCTTTTGTCCCACAATATAAGACGTT | 59.850 | 38.462 | 0.00 | 0.00 | 38.00 | 3.99 |
459 | 488 | 7.308951 | CCTTTTGTCCCACAATATAAGACGTTT | 60.309 | 37.037 | 0.00 | 0.00 | 38.00 | 3.60 |
460 | 489 | 7.513371 | TTTGTCCCACAATATAAGACGTTTT | 57.487 | 32.000 | 0.00 | 0.00 | 38.00 | 2.43 |
461 | 490 | 7.513371 | TTGTCCCACAATATAAGACGTTTTT | 57.487 | 32.000 | 0.00 | 0.00 | 32.34 | 1.94 |
462 | 491 | 6.904498 | TGTCCCACAATATAAGACGTTTTTG | 58.096 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
463 | 492 | 5.798434 | GTCCCACAATATAAGACGTTTTTGC | 59.202 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
464 | 493 | 5.473846 | TCCCACAATATAAGACGTTTTTGCA | 59.526 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
465 | 494 | 6.016192 | TCCCACAATATAAGACGTTTTTGCAA | 60.016 | 34.615 | 0.00 | 0.00 | 0.00 | 4.08 |
466 | 495 | 6.307800 | CCCACAATATAAGACGTTTTTGCAAG | 59.692 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
467 | 496 | 6.183359 | CCACAATATAAGACGTTTTTGCAAGC | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
468 | 497 | 6.582295 | CACAATATAAGACGTTTTTGCAAGCT | 59.418 | 34.615 | 0.00 | 0.00 | 0.00 | 3.74 |
469 | 498 | 7.748683 | CACAATATAAGACGTTTTTGCAAGCTA | 59.251 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
470 | 499 | 8.293867 | ACAATATAAGACGTTTTTGCAAGCTAA | 58.706 | 29.630 | 0.00 | 0.00 | 0.00 | 3.09 |
471 | 500 | 8.575454 | CAATATAAGACGTTTTTGCAAGCTAAC | 58.425 | 33.333 | 0.00 | 5.28 | 0.00 | 2.34 |
472 | 501 | 4.364415 | AAGACGTTTTTGCAAGCTAACA | 57.636 | 36.364 | 16.37 | 0.00 | 0.00 | 2.41 |
473 | 502 | 4.568152 | AGACGTTTTTGCAAGCTAACAT | 57.432 | 36.364 | 16.37 | 5.95 | 0.00 | 2.71 |
474 | 503 | 5.682943 | AGACGTTTTTGCAAGCTAACATA | 57.317 | 34.783 | 16.37 | 0.00 | 0.00 | 2.29 |
475 | 504 | 5.689819 | AGACGTTTTTGCAAGCTAACATAG | 58.310 | 37.500 | 16.37 | 7.17 | 0.00 | 2.23 |
493 | 522 | 9.722056 | CTAACATAGCTTGGAAAAACATGATAC | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
494 | 523 | 7.701539 | ACATAGCTTGGAAAAACATGATACA | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
495 | 524 | 8.297470 | ACATAGCTTGGAAAAACATGATACAT | 57.703 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
496 | 525 | 8.752187 | ACATAGCTTGGAAAAACATGATACATT | 58.248 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
500 | 529 | 8.199449 | AGCTTGGAAAAACATGATACATTATGG | 58.801 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
501 | 530 | 7.439056 | GCTTGGAAAAACATGATACATTATGGG | 59.561 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
502 | 531 | 8.601047 | TTGGAAAAACATGATACATTATGGGA | 57.399 | 30.769 | 0.00 | 0.00 | 0.00 | 4.37 |
503 | 532 | 8.006298 | TGGAAAAACATGATACATTATGGGAC | 57.994 | 34.615 | 0.00 | 0.00 | 0.00 | 4.46 |
504 | 533 | 7.138736 | GGAAAAACATGATACATTATGGGACG | 58.861 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
505 | 534 | 6.633500 | AAAACATGATACATTATGGGACGG | 57.367 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
506 | 535 | 5.560722 | AACATGATACATTATGGGACGGA | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
507 | 536 | 5.152623 | ACATGATACATTATGGGACGGAG | 57.847 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
508 | 537 | 4.020218 | ACATGATACATTATGGGACGGAGG | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
509 | 538 | 2.903784 | TGATACATTATGGGACGGAGGG | 59.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
527 | 556 | 5.104652 | CGGAGGGAGTAGAAGGGAAAAATTA | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
530 | 559 | 6.188407 | AGGGAGTAGAAGGGAAAAATTAAGC | 58.812 | 40.000 | 0.00 | 0.00 | 0.00 | 3.09 |
554 | 583 | 7.286316 | AGCATGAAGGAGAACCATATTTTAAGG | 59.714 | 37.037 | 0.00 | 0.00 | 38.94 | 2.69 |
555 | 584 | 7.470563 | GCATGAAGGAGAACCATATTTTAAGGG | 60.471 | 40.741 | 0.00 | 0.00 | 38.94 | 3.95 |
561 | 593 | 7.959152 | AGGAGAACCATATTTTAAGGGGAAAAA | 59.041 | 33.333 | 0.00 | 0.00 | 38.94 | 1.94 |
641 | 678 | 7.969690 | TTTTATGGGATTGATACACATTGGT | 57.030 | 32.000 | 0.00 | 0.00 | 33.27 | 3.67 |
702 | 2152 | 5.992829 | TGCTTTTTGTACCAACGAATCTCTA | 59.007 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
705 | 2155 | 7.416154 | TTTTTGTACCAACGAATCTCTACTG | 57.584 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
706 | 2156 | 5.717078 | TTGTACCAACGAATCTCTACTGT | 57.283 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
707 | 2157 | 5.055642 | TGTACCAACGAATCTCTACTGTG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
708 | 2158 | 4.521639 | TGTACCAACGAATCTCTACTGTGT | 59.478 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
709 | 2159 | 4.602340 | ACCAACGAATCTCTACTGTGTT | 57.398 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
710 | 2160 | 4.307432 | ACCAACGAATCTCTACTGTGTTG | 58.693 | 43.478 | 0.00 | 0.00 | 36.04 | 3.33 |
711 | 2161 | 4.038763 | ACCAACGAATCTCTACTGTGTTGA | 59.961 | 41.667 | 3.94 | 0.00 | 37.90 | 3.18 |
712 | 2162 | 4.623167 | CCAACGAATCTCTACTGTGTTGAG | 59.377 | 45.833 | 3.94 | 3.46 | 37.90 | 3.02 |
713 | 2163 | 5.461526 | CAACGAATCTCTACTGTGTTGAGA | 58.538 | 41.667 | 12.50 | 12.50 | 45.03 | 3.27 |
757 | 2236 | 7.294245 | AGAAATTCATCAATAGGATCCAGAGGA | 59.706 | 37.037 | 15.82 | 10.30 | 32.57 | 3.71 |
785 | 2269 | 7.664318 | TCCAGGTTTTTAACTGAAGAATCCTAC | 59.336 | 37.037 | 0.00 | 0.00 | 36.86 | 3.18 |
788 | 2272 | 9.642343 | AGGTTTTTAACTGAAGAATCCTACTTT | 57.358 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
808 | 2292 | 6.360618 | ACTTTTGGACTGAGAAACTGAAGAT | 58.639 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
811 | 2295 | 4.635223 | TGGACTGAGAAACTGAAGATGTG | 58.365 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
826 | 2310 | 6.645700 | GAAGATGTGCTACTTCTTCTTCAG | 57.354 | 41.667 | 22.88 | 0.00 | 46.90 | 3.02 |
840 | 2327 | 4.567558 | TCTTCTTCAGTTAAAAACGACGCA | 59.432 | 37.500 | 0.00 | 0.00 | 36.23 | 5.24 |
862 | 2349 | 3.078837 | TCCGGAATTAAAACAGCTGGAC | 58.921 | 45.455 | 19.93 | 0.00 | 0.00 | 4.02 |
942 | 2429 | 0.459585 | GCGACAGCTGGTAATCCGAA | 60.460 | 55.000 | 19.93 | 0.00 | 41.01 | 4.30 |
1018 | 2507 | 1.660167 | CAGCTCCAATTCGATCTGCA | 58.340 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1019 | 2508 | 2.219458 | CAGCTCCAATTCGATCTGCAT | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
1056 | 2551 | 1.399744 | CCAGACCTAGGCACGCCATA | 61.400 | 60.000 | 9.30 | 0.00 | 38.92 | 2.74 |
1739 | 3249 | 0.390472 | GCCCGTGAAGAAGGTCTCTG | 60.390 | 60.000 | 0.00 | 0.00 | 33.37 | 3.35 |
1752 | 3262 | 1.906824 | TCTCTGGTCCCGTCGCTTT | 60.907 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
1892 | 3402 | 1.134551 | GCAAGGTTCCCAAGCAAAACA | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1911 | 3421 | 0.527565 | AAATCGCCATTGCCTGTCAC | 59.472 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1997 | 3511 | 8.475331 | TTGCTAGTCTTTTATCTTCCTAAACG | 57.525 | 34.615 | 0.00 | 0.00 | 0.00 | 3.60 |
2063 | 3577 | 6.716628 | TCTGCACTTAATCACCAAGATTTCTT | 59.283 | 34.615 | 0.00 | 0.00 | 44.48 | 2.52 |
2079 | 3593 | 7.830099 | AGATTTCTTGTGTTCTTTGAATCCT | 57.170 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2305 | 3826 | 1.478137 | GGCACGAGACATAGCGTAAG | 58.522 | 55.000 | 0.00 | 0.00 | 38.92 | 2.34 |
2327 | 3848 | 2.368980 | GCACTAGCCGCGAAATAAAG | 57.631 | 50.000 | 8.23 | 0.00 | 33.58 | 1.85 |
2426 | 4147 | 1.032657 | TGCCTAGCGTCTGGAGTCTC | 61.033 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2435 | 4156 | 1.892474 | GTCTGGAGTCTCTGCTGACTT | 59.108 | 52.381 | 16.22 | 0.00 | 46.11 | 3.01 |
2445 | 4166 | 6.529220 | AGTCTCTGCTGACTTTCTTGTAAAT | 58.471 | 36.000 | 2.59 | 0.00 | 44.01 | 1.40 |
2494 | 9317 | 2.673043 | GCATTGGCATCTTGGTGAGTTG | 60.673 | 50.000 | 0.00 | 0.00 | 40.72 | 3.16 |
2542 | 9365 | 3.804036 | TGGTTAGTGAACTCTTGTGTGG | 58.196 | 45.455 | 0.00 | 0.00 | 35.74 | 4.17 |
2691 | 9632 | 2.995939 | TGAGCAGAGCATTTGAGTAACG | 59.004 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3115 | 10708 | 1.135721 | GGGCATTGCTTGGAATCACTC | 59.864 | 52.381 | 8.82 | 0.00 | 0.00 | 3.51 |
3141 | 10734 | 9.946165 | CGATCTAATTTGTTACTTTTAATCCCC | 57.054 | 33.333 | 0.00 | 0.00 | 0.00 | 4.81 |
3143 | 10736 | 8.283699 | TCTAATTTGTTACTTTTAATCCCCCG | 57.716 | 34.615 | 0.00 | 0.00 | 0.00 | 5.73 |
3194 | 10950 | 2.224079 | GCGACAACATGCTCAGAAGAAA | 59.776 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
32 | 33 | 4.129380 | GACACCATTGCATGTATAGAGCA | 58.871 | 43.478 | 0.00 | 0.00 | 36.32 | 4.26 |
33 | 34 | 4.024556 | GTGACACCATTGCATGTATAGAGC | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 4.09 |
40 | 43 | 2.516906 | TGATGTGACACCATTGCATGT | 58.483 | 42.857 | 2.45 | 0.00 | 0.00 | 3.21 |
50 | 53 | 4.548494 | TGCATGTTTTGATGATGTGACAC | 58.452 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
53 | 56 | 5.394224 | ACATGCATGTTTTGATGATGTGA | 57.606 | 34.783 | 26.61 | 0.00 | 37.90 | 3.58 |
84 | 87 | 8.677300 | GGATGAACTCTATTGCAGAAAATAACA | 58.323 | 33.333 | 0.00 | 0.00 | 31.12 | 2.41 |
98 | 101 | 8.641498 | AACAAAACATGAAGGATGAACTCTAT | 57.359 | 30.769 | 0.00 | 0.00 | 35.80 | 1.98 |
115 | 118 | 6.506500 | AATGTTGGCATTTCAAACAAAACA | 57.493 | 29.167 | 0.00 | 0.00 | 42.19 | 2.83 |
335 | 364 | 5.866633 | CGGAATAAGATACAGGCTTCAGATC | 59.133 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
358 | 387 | 1.807142 | GGGAAGCCAAAGAGAAGTTCG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
368 | 397 | 2.286935 | AGGAGGATAGGGAAGCCAAA | 57.713 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
434 | 463 | 6.737254 | ACGTCTTATATTGTGGGACAAAAG | 57.263 | 37.500 | 0.00 | 0.00 | 39.85 | 2.27 |
435 | 464 | 7.513371 | AAACGTCTTATATTGTGGGACAAAA | 57.487 | 32.000 | 0.00 | 0.00 | 44.16 | 2.44 |
436 | 465 | 7.513371 | AAAACGTCTTATATTGTGGGACAAA | 57.487 | 32.000 | 0.00 | 0.00 | 44.16 | 2.83 |
437 | 466 | 7.364200 | CAAAAACGTCTTATATTGTGGGACAA | 58.636 | 34.615 | 0.00 | 0.00 | 44.16 | 3.18 |
438 | 467 | 6.568844 | GCAAAAACGTCTTATATTGTGGGACA | 60.569 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
439 | 468 | 5.798434 | GCAAAAACGTCTTATATTGTGGGAC | 59.202 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
440 | 469 | 5.473846 | TGCAAAAACGTCTTATATTGTGGGA | 59.526 | 36.000 | 0.00 | 0.00 | 0.00 | 4.37 |
441 | 470 | 5.704888 | TGCAAAAACGTCTTATATTGTGGG | 58.295 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
442 | 471 | 6.183359 | GCTTGCAAAAACGTCTTATATTGTGG | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
443 | 472 | 6.582295 | AGCTTGCAAAAACGTCTTATATTGTG | 59.418 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
444 | 473 | 6.677913 | AGCTTGCAAAAACGTCTTATATTGT | 58.322 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
445 | 474 | 8.575454 | GTTAGCTTGCAAAAACGTCTTATATTG | 58.425 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
446 | 475 | 8.293867 | TGTTAGCTTGCAAAAACGTCTTATATT | 58.706 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
447 | 476 | 7.812648 | TGTTAGCTTGCAAAAACGTCTTATAT | 58.187 | 30.769 | 0.00 | 0.00 | 0.00 | 0.86 |
448 | 477 | 7.192148 | TGTTAGCTTGCAAAAACGTCTTATA | 57.808 | 32.000 | 0.00 | 0.00 | 0.00 | 0.98 |
449 | 478 | 6.067263 | TGTTAGCTTGCAAAAACGTCTTAT | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
450 | 479 | 5.487153 | TGTTAGCTTGCAAAAACGTCTTA | 57.513 | 34.783 | 0.00 | 0.00 | 0.00 | 2.10 |
451 | 480 | 4.364415 | TGTTAGCTTGCAAAAACGTCTT | 57.636 | 36.364 | 0.00 | 0.00 | 0.00 | 3.01 |
452 | 481 | 4.568152 | ATGTTAGCTTGCAAAAACGTCT | 57.432 | 36.364 | 0.00 | 0.00 | 0.00 | 4.18 |
453 | 482 | 5.975138 | CTATGTTAGCTTGCAAAAACGTC | 57.025 | 39.130 | 13.85 | 0.43 | 0.00 | 4.34 |
467 | 496 | 9.722056 | GTATCATGTTTTTCCAAGCTATGTTAG | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
468 | 497 | 9.237187 | TGTATCATGTTTTTCCAAGCTATGTTA | 57.763 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
469 | 498 | 8.121305 | TGTATCATGTTTTTCCAAGCTATGTT | 57.879 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
470 | 499 | 7.701539 | TGTATCATGTTTTTCCAAGCTATGT | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
474 | 503 | 8.199449 | CCATAATGTATCATGTTTTTCCAAGCT | 58.801 | 33.333 | 0.00 | 0.00 | 0.00 | 3.74 |
475 | 504 | 7.439056 | CCCATAATGTATCATGTTTTTCCAAGC | 59.561 | 37.037 | 0.00 | 0.00 | 0.00 | 4.01 |
476 | 505 | 8.694540 | TCCCATAATGTATCATGTTTTTCCAAG | 58.305 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
477 | 506 | 8.474025 | GTCCCATAATGTATCATGTTTTTCCAA | 58.526 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
478 | 507 | 7.201776 | CGTCCCATAATGTATCATGTTTTTCCA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
479 | 508 | 7.138736 | CGTCCCATAATGTATCATGTTTTTCC | 58.861 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
480 | 509 | 7.012894 | TCCGTCCCATAATGTATCATGTTTTTC | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
481 | 510 | 6.831353 | TCCGTCCCATAATGTATCATGTTTTT | 59.169 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
482 | 511 | 6.361433 | TCCGTCCCATAATGTATCATGTTTT | 58.639 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
483 | 512 | 5.935945 | TCCGTCCCATAATGTATCATGTTT | 58.064 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
484 | 513 | 5.513094 | CCTCCGTCCCATAATGTATCATGTT | 60.513 | 44.000 | 0.00 | 0.00 | 0.00 | 2.71 |
485 | 514 | 4.020218 | CCTCCGTCCCATAATGTATCATGT | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
486 | 515 | 4.507710 | CCTCCGTCCCATAATGTATCATG | 58.492 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
487 | 516 | 3.519510 | CCCTCCGTCCCATAATGTATCAT | 59.480 | 47.826 | 0.00 | 0.00 | 0.00 | 2.45 |
488 | 517 | 2.903784 | CCCTCCGTCCCATAATGTATCA | 59.096 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
489 | 518 | 3.170717 | TCCCTCCGTCCCATAATGTATC | 58.829 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
490 | 519 | 3.173965 | CTCCCTCCGTCCCATAATGTAT | 58.826 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
491 | 520 | 2.090943 | ACTCCCTCCGTCCCATAATGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
492 | 521 | 1.344087 | ACTCCCTCCGTCCCATAATGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
493 | 522 | 1.424638 | ACTCCCTCCGTCCCATAATG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
494 | 523 | 2.449730 | TCTACTCCCTCCGTCCCATAAT | 59.550 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
495 | 524 | 1.854939 | TCTACTCCCTCCGTCCCATAA | 59.145 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
496 | 525 | 1.526315 | TCTACTCCCTCCGTCCCATA | 58.474 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
497 | 526 | 0.635009 | TTCTACTCCCTCCGTCCCAT | 59.365 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
498 | 527 | 0.033405 | CTTCTACTCCCTCCGTCCCA | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
499 | 528 | 0.756070 | CCTTCTACTCCCTCCGTCCC | 60.756 | 65.000 | 0.00 | 0.00 | 0.00 | 4.46 |
500 | 529 | 0.756070 | CCCTTCTACTCCCTCCGTCC | 60.756 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
501 | 530 | 0.258194 | TCCCTTCTACTCCCTCCGTC | 59.742 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
502 | 531 | 0.708802 | TTCCCTTCTACTCCCTCCGT | 59.291 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
503 | 532 | 1.861982 | TTTCCCTTCTACTCCCTCCG | 58.138 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
504 | 533 | 4.864483 | ATTTTTCCCTTCTACTCCCTCC | 57.136 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
505 | 534 | 6.319152 | GCTTAATTTTTCCCTTCTACTCCCTC | 59.681 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
506 | 535 | 6.188407 | GCTTAATTTTTCCCTTCTACTCCCT | 58.812 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
507 | 536 | 5.949952 | TGCTTAATTTTTCCCTTCTACTCCC | 59.050 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
508 | 537 | 7.339466 | TCATGCTTAATTTTTCCCTTCTACTCC | 59.661 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
509 | 538 | 8.281212 | TCATGCTTAATTTTTCCCTTCTACTC | 57.719 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
527 | 556 | 8.593945 | TTAAAATATGGTTCTCCTTCATGCTT | 57.406 | 30.769 | 0.00 | 0.00 | 34.23 | 3.91 |
530 | 559 | 7.014615 | CCCCTTAAAATATGGTTCTCCTTCATG | 59.985 | 40.741 | 0.00 | 0.00 | 34.23 | 3.07 |
757 | 2236 | 6.490381 | GGATTCTTCAGTTAAAAACCTGGACT | 59.510 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
785 | 2269 | 6.261826 | ACATCTTCAGTTTCTCAGTCCAAAAG | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
788 | 2272 | 5.059161 | CACATCTTCAGTTTCTCAGTCCAA | 58.941 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
808 | 2292 | 8.395633 | GTTTTTAACTGAAGAAGAAGTAGCACA | 58.604 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
811 | 2295 | 7.792967 | GTCGTTTTTAACTGAAGAAGAAGTAGC | 59.207 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
824 | 2308 | 2.492001 | CGGATGCGTCGTTTTTAACTG | 58.508 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
825 | 2309 | 1.461897 | CCGGATGCGTCGTTTTTAACT | 59.538 | 47.619 | 5.72 | 0.00 | 0.00 | 2.24 |
826 | 2310 | 1.460359 | TCCGGATGCGTCGTTTTTAAC | 59.540 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
840 | 2327 | 3.694566 | GTCCAGCTGTTTTAATTCCGGAT | 59.305 | 43.478 | 13.81 | 0.00 | 0.00 | 4.18 |
862 | 2349 | 0.025513 | GCAATCTCACGCGCTGTTAG | 59.974 | 55.000 | 5.73 | 6.54 | 0.00 | 2.34 |
942 | 2429 | 1.211457 | AGCTCCTGATTCTTGCCGAAT | 59.789 | 47.619 | 0.00 | 0.00 | 44.87 | 3.34 |
1018 | 2507 | 0.764752 | GAGATCGGGAAGGTGGGGAT | 60.765 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1019 | 2508 | 1.382695 | GAGATCGGGAAGGTGGGGA | 60.383 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
1703 | 3213 | 2.956194 | CGCAACAGCATTGGCAGA | 59.044 | 55.556 | 3.24 | 0.00 | 44.61 | 4.26 |
1739 | 3249 | 2.033194 | CCTTGAAAGCGACGGGACC | 61.033 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
1752 | 3262 | 1.512926 | GACGAAAGAGCAAGCCTTGA | 58.487 | 50.000 | 9.04 | 0.00 | 0.00 | 3.02 |
1804 | 3314 | 1.002087 | GTCATCTTCTTCACACCGGGT | 59.998 | 52.381 | 6.32 | 0.00 | 0.00 | 5.28 |
1892 | 3402 | 0.527565 | GTGACAGGCAATGGCGATTT | 59.472 | 50.000 | 0.00 | 0.00 | 41.39 | 2.17 |
2063 | 3577 | 5.192927 | ACTGAACAGGATTCAAAGAACACA | 58.807 | 37.500 | 6.76 | 0.00 | 0.00 | 3.72 |
2313 | 3834 | 0.096454 | GCGTTCTTTATTTCGCGGCT | 59.904 | 50.000 | 6.13 | 0.00 | 39.35 | 5.52 |
2319 | 3840 | 2.659757 | GCAAACGGGCGTTCTTTATTTC | 59.340 | 45.455 | 0.00 | 0.00 | 37.35 | 2.17 |
2327 | 3848 | 2.683859 | GGGTAGCAAACGGGCGTTC | 61.684 | 63.158 | 0.00 | 0.00 | 37.35 | 3.95 |
2494 | 9317 | 1.192534 | CTCGTCGGAAACTGCAACTTC | 59.807 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2542 | 9365 | 2.227388 | CTCAAAGCTTCACCCACACATC | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3115 | 10708 | 9.946165 | GGGGATTAAAAGTAACAAATTAGATCG | 57.054 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
3155 | 10911 | 6.680874 | TGTCGCTCCTTTAAAAGTAACAAA | 57.319 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3157 | 10913 | 5.585445 | TGTTGTCGCTCCTTTAAAAGTAACA | 59.415 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3158 | 10914 | 6.051646 | TGTTGTCGCTCCTTTAAAAGTAAC | 57.948 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
3159 | 10915 | 6.664515 | CATGTTGTCGCTCCTTTAAAAGTAA | 58.335 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3163 | 10919 | 3.568007 | AGCATGTTGTCGCTCCTTTAAAA | 59.432 | 39.130 | 0.00 | 0.00 | 31.16 | 1.52 |
3167 | 10923 | 3.329300 | AGCATGTTGTCGCTCCTTT | 57.671 | 47.368 | 0.00 | 0.00 | 31.16 | 3.11 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.