Multiple sequence alignment - TraesCS2B01G162100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G162100 chr2B 100.000 3705 0 0 1530 5234 135004931 135008635 0.000000e+00 6842.0
1 TraesCS2B01G162100 chr2B 100.000 1247 0 0 1 1247 135003402 135004648 0.000000e+00 2303.0
2 TraesCS2B01G162100 chr2A 88.926 1788 145 15 1530 3314 83825915 83827652 0.000000e+00 2156.0
3 TraesCS2B01G162100 chr2A 91.252 1246 64 24 1 1228 83824114 83825332 0.000000e+00 1655.0
4 TraesCS2B01G162100 chr2A 89.091 935 59 20 4333 5232 83828491 83829417 0.000000e+00 1122.0
5 TraesCS2B01G162100 chr2A 82.553 235 24 9 4030 4261 83828176 83828396 1.920000e-44 191.0
6 TraesCS2B01G162100 chr2A 93.750 48 2 1 3915 3962 757630069 757630023 2.610000e-08 71.3
7 TraesCS2B01G162100 chr2A 97.059 34 1 0 3308 3341 159086847 159086814 2.040000e-04 58.4
8 TraesCS2B01G162100 chr2D 91.632 1422 105 9 1806 3224 83138163 83139573 0.000000e+00 1954.0
9 TraesCS2B01G162100 chr2D 93.131 1252 55 13 1 1245 83136482 83137709 0.000000e+00 1807.0
10 TraesCS2B01G162100 chr2D 95.255 569 25 2 4667 5234 83141678 83142245 0.000000e+00 900.0
11 TraesCS2B01G162100 chr2D 81.275 251 26 9 1530 1771 83137742 83137980 3.220000e-42 183.0
12 TraesCS2B01G162100 chr2D 96.825 63 1 1 3970 4031 549001748 549001810 2.580000e-18 104.0
13 TraesCS2B01G162100 chr2D 94.203 69 1 3 3970 4037 32990637 32990571 9.270000e-18 102.0
14 TraesCS2B01G162100 chr3B 95.522 67 2 1 3970 4035 426527927 426527861 7.170000e-19 106.0
15 TraesCS2B01G162100 chr6D 96.825 63 0 2 3970 4031 389645598 389645659 2.580000e-18 104.0
16 TraesCS2B01G162100 chr6D 94.286 70 1 1 3970 4036 420732474 420732405 2.580000e-18 104.0
17 TraesCS2B01G162100 chr6D 97.561 41 1 0 3340 3380 14789248 14789288 2.610000e-08 71.3
18 TraesCS2B01G162100 chr6D 95.556 45 1 1 3336 3379 409547329 409547373 2.610000e-08 71.3
19 TraesCS2B01G162100 chr6D 92.000 50 2 2 3340 3387 368363625 368363674 9.400000e-08 69.4
20 TraesCS2B01G162100 chr3D 96.825 63 1 1 3970 4031 341026247 341026309 2.580000e-18 104.0
21 TraesCS2B01G162100 chr4A 95.312 64 1 1 3970 4031 624263601 624263538 3.340000e-17 100.0
22 TraesCS2B01G162100 chr5D 95.238 63 1 2 3970 4032 446570681 446570621 1.200000e-16 99.0
23 TraesCS2B01G162100 chr1B 92.754 69 2 2 3970 4035 641923844 641923776 4.310000e-16 97.1
24 TraesCS2B01G162100 chr5A 88.158 76 5 3 3312 3383 169296047 169296122 2.600000e-13 87.9
25 TraesCS2B01G162100 chr5A 92.000 50 3 1 3336 3384 647485024 647485073 9.400000e-08 69.4
26 TraesCS2B01G162100 chr5A 84.615 65 4 3 4002 4064 618190241 618190181 5.660000e-05 60.2
27 TraesCS2B01G162100 chrUn 100.000 41 0 0 3922 3962 295269475 295269515 5.620000e-10 76.8
28 TraesCS2B01G162100 chrUn 100.000 41 0 0 3922 3962 313003275 313003315 5.620000e-10 76.8
29 TraesCS2B01G162100 chrUn 100.000 41 0 0 3922 3962 336976583 336976543 5.620000e-10 76.8
30 TraesCS2B01G162100 chr7B 100.000 41 0 0 3922 3962 604218234 604218194 5.620000e-10 76.8
31 TraesCS2B01G162100 chr5B 92.593 54 2 2 3336 3387 147440541 147440594 5.620000e-10 76.8
32 TraesCS2B01G162100 chr7D 97.674 43 0 1 3339 3380 561522689 561522731 7.270000e-09 73.1
33 TraesCS2B01G162100 chr6A 89.655 58 3 3 3905 3962 530623706 530623652 2.610000e-08 71.3
34 TraesCS2B01G162100 chr4D 97.561 41 1 0 3922 3962 342258550 342258590 2.610000e-08 71.3
35 TraesCS2B01G162100 chr1D 97.619 42 0 1 3339 3379 198283022 198282981 2.610000e-08 71.3
36 TraesCS2B01G162100 chr1D 97.561 41 1 0 3922 3962 441594105 441594065 2.610000e-08 71.3
37 TraesCS2B01G162100 chr1A 97.561 41 1 0 3922 3962 78795350 78795310 2.610000e-08 71.3
38 TraesCS2B01G162100 chr3A 90.566 53 4 1 3336 3387 661647677 661647729 9.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G162100 chr2B 135003402 135008635 5233 False 4572.5 6842 100.00000 1 5234 2 chr2B.!!$F1 5233
1 TraesCS2B01G162100 chr2A 83824114 83829417 5303 False 1281.0 2156 87.95550 1 5232 4 chr2A.!!$F1 5231
2 TraesCS2B01G162100 chr2D 83136482 83142245 5763 False 1211.0 1954 90.32325 1 5234 4 chr2D.!!$F2 5233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 760 0.969894 CCAACGGTTCCTCTCTGAGT 59.030 55.0 4.32 0.0 0.00 3.41 F
1653 2211 0.107508 CGGGTCTGCATCCACTTCAT 60.108 55.0 9.72 0.0 0.00 2.57 F
1723 2281 0.164647 GCATGAATAGTGATCCGCGC 59.835 55.0 0.00 0.0 0.00 6.86 F
1727 2285 0.233332 GAATAGTGATCCGCGCTTGC 59.767 55.0 5.56 0.0 38.54 4.01 F
3331 4358 0.397254 CTCCCTCCGTCCCACAGTAT 60.397 60.0 0.00 0.0 0.00 2.12 F
4137 5312 0.105039 GGAAGATGGTACGGCCTGAG 59.895 60.0 0.00 0.0 38.35 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 2252 0.235144 CTATTCATGCAGCAGAGCGC 59.765 55.000 0.0 0.0 42.91 5.92 R
3361 4388 0.113776 ACTACTCCCTCCGTCCACAA 59.886 55.000 0.0 0.0 0.00 3.33 R
3539 4568 0.177141 GGGTGGCGTTGCTATCTACA 59.823 55.000 0.0 0.0 0.00 2.74 R
3638 4685 1.553248 TGACTTCCAACAGATACGGGG 59.447 52.381 0.0 0.0 0.00 5.73 R
4142 5317 0.039035 GACAGGTTGCCCATTACCCA 59.961 55.000 0.0 0.0 34.90 4.51 R
4995 6720 1.201647 CGTTACGATGTGGTCACCTCT 59.798 52.381 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.425668 TCATGAGCGAGTCATAACCGAA 59.574 45.455 0.00 0.00 44.73 4.30
24 25 3.068165 TCATGAGCGAGTCATAACCGAAT 59.932 43.478 0.00 0.00 44.73 3.34
49 50 2.598394 AGGTGTGGCCACATGTGC 60.598 61.111 39.53 26.33 43.97 4.57
160 161 2.551459 GCACTACATGATGCAAGATCCC 59.449 50.000 13.88 0.00 41.65 3.85
188 189 3.117851 TGATAACACCAGGTGAACCACAA 60.118 43.478 27.39 2.51 36.96 3.33
226 227 1.301401 CTTCAAGTTCCGGTCGCCA 60.301 57.895 0.00 0.00 0.00 5.69
295 299 6.074142 GCTTGTGAATTGGAGTTTTGCTTTAG 60.074 38.462 0.00 0.00 0.00 1.85
296 300 5.288804 TGTGAATTGGAGTTTTGCTTTAGC 58.711 37.500 0.00 0.00 42.50 3.09
297 301 5.068987 TGTGAATTGGAGTTTTGCTTTAGCT 59.931 36.000 3.10 0.00 42.66 3.32
298 302 5.403466 GTGAATTGGAGTTTTGCTTTAGCTG 59.597 40.000 0.00 0.00 42.66 4.24
305 312 5.460091 GGAGTTTTGCTTTAGCTGAAACTTG 59.540 40.000 24.01 0.00 46.85 3.16
358 365 1.136147 GCGCCAGTTGCTGATCTTG 59.864 57.895 0.00 0.00 38.05 3.02
398 405 4.982916 GTGTACAGAGTGTTCTTGTGTAGG 59.017 45.833 0.00 0.00 29.85 3.18
430 437 1.882912 AACAGCGCTCTGATTGACAA 58.117 45.000 7.13 0.00 42.95 3.18
476 487 5.308014 TGGTGGATCAATTGATTCTATCCG 58.692 41.667 24.13 0.00 39.20 4.18
484 495 5.522460 TCAATTGATTCTATCCGACGGAAAC 59.478 40.000 22.55 3.52 34.34 2.78
574 588 1.563435 CTTGTGTGCTCACTGCTCGG 61.563 60.000 18.85 1.07 44.14 4.63
660 676 5.794687 TTCTTGTATGCATAAACTCGGTG 57.205 39.130 8.28 0.00 0.00 4.94
692 708 2.417379 CGGTCAAGATTCTCGACACCAT 60.417 50.000 7.06 0.00 0.00 3.55
740 756 2.876079 GCAAATCCAACGGTTCCTCTCT 60.876 50.000 0.00 0.00 0.00 3.10
741 757 2.744202 CAAATCCAACGGTTCCTCTCTG 59.256 50.000 0.00 0.00 0.00 3.35
742 758 1.938585 ATCCAACGGTTCCTCTCTGA 58.061 50.000 0.00 0.00 0.00 3.27
743 759 1.257743 TCCAACGGTTCCTCTCTGAG 58.742 55.000 0.00 0.00 0.00 3.35
744 760 0.969894 CCAACGGTTCCTCTCTGAGT 59.030 55.000 4.32 0.00 0.00 3.41
745 761 2.168496 CCAACGGTTCCTCTCTGAGTA 58.832 52.381 4.32 0.00 0.00 2.59
746 762 2.761208 CCAACGGTTCCTCTCTGAGTAT 59.239 50.000 4.32 0.00 0.00 2.12
747 763 3.952323 CCAACGGTTCCTCTCTGAGTATA 59.048 47.826 4.32 0.00 0.00 1.47
755 771 5.512942 TCCTCTCTGAGTATATCTCCTGG 57.487 47.826 4.32 0.00 42.12 4.45
842 858 5.184864 TCCTTAAACATTGTGCCATGGTTAG 59.815 40.000 14.67 0.54 32.33 2.34
916 932 1.135721 GCTTTGGTGCATCAGGGATTC 59.864 52.381 0.00 0.00 0.00 2.52
949 965 2.561037 GCCAAACAACCTCACGGGG 61.561 63.158 0.00 0.00 40.03 5.73
1074 1091 0.179119 ATCTGCGCGTGTAACCCTAC 60.179 55.000 8.43 0.00 0.00 3.18
1245 1801 2.654912 CGACGGCGTCTGAAACACC 61.655 63.158 33.90 8.91 0.00 4.16
1548 2104 0.179097 GATCTCTTCCGTGTCCTGCC 60.179 60.000 0.00 0.00 0.00 4.85
1653 2211 0.107508 CGGGTCTGCATCCACTTCAT 60.108 55.000 9.72 0.00 0.00 2.57
1668 2226 5.422012 TCCACTTCATAGCAGTCACTGATTA 59.578 40.000 9.70 0.00 32.44 1.75
1669 2227 6.098838 TCCACTTCATAGCAGTCACTGATTAT 59.901 38.462 9.70 2.64 32.44 1.28
1670 2228 6.765036 CCACTTCATAGCAGTCACTGATTATT 59.235 38.462 9.70 0.00 32.44 1.40
1671 2229 7.928167 CCACTTCATAGCAGTCACTGATTATTA 59.072 37.037 9.70 0.00 32.44 0.98
1679 2237 8.000780 AGCAGTCACTGATTATTATTTTTCCC 57.999 34.615 9.70 0.00 32.44 3.97
1681 2239 7.068716 GCAGTCACTGATTATTATTTTTCCCCT 59.931 37.037 9.70 0.00 32.44 4.79
1682 2240 8.971073 CAGTCACTGATTATTATTTTTCCCCTT 58.029 33.333 0.00 0.00 32.44 3.95
1683 2241 9.547279 AGTCACTGATTATTATTTTTCCCCTTT 57.453 29.630 0.00 0.00 0.00 3.11
1684 2242 9.586435 GTCACTGATTATTATTTTTCCCCTTTG 57.414 33.333 0.00 0.00 0.00 2.77
1685 2243 9.540538 TCACTGATTATTATTTTTCCCCTTTGA 57.459 29.630 0.00 0.00 0.00 2.69
1688 2246 9.317936 CTGATTATTATTTTTCCCCTTTGAAGC 57.682 33.333 0.00 0.00 0.00 3.86
1689 2247 8.820831 TGATTATTATTTTTCCCCTTTGAAGCA 58.179 29.630 0.00 0.00 0.00 3.91
1690 2248 9.098355 GATTATTATTTTTCCCCTTTGAAGCAC 57.902 33.333 0.00 0.00 0.00 4.40
1694 2252 1.172180 TTCCCCTTTGAAGCACGCTG 61.172 55.000 0.00 0.00 0.00 5.18
1695 2253 2.256461 CCCTTTGAAGCACGCTGC 59.744 61.111 0.00 0.00 45.46 5.25
1710 2268 2.358984 TGCGCTCTGCTGCATGAA 60.359 55.556 9.73 0.00 46.63 2.57
1714 2272 1.579698 CGCTCTGCTGCATGAATAGT 58.420 50.000 1.31 0.00 0.00 2.12
1720 2278 2.479275 CTGCTGCATGAATAGTGATCCG 59.521 50.000 1.31 0.00 0.00 4.18
1723 2281 0.164647 GCATGAATAGTGATCCGCGC 59.835 55.000 0.00 0.00 0.00 6.86
1727 2285 0.233332 GAATAGTGATCCGCGCTTGC 59.767 55.000 5.56 0.00 38.54 4.01
1729 2287 0.598680 ATAGTGATCCGCGCTTGCTC 60.599 55.000 5.56 0.00 38.54 4.26
1733 2291 4.227134 ATCCGCGCTTGCTCCGAT 62.227 61.111 5.56 0.00 36.08 4.18
1742 2300 2.033407 CGCTTGCTCCGATAAGTTCATG 60.033 50.000 0.00 0.00 0.00 3.07
1767 2325 3.377172 TCTGCTGCACATCAATCAATCAG 59.623 43.478 0.00 0.00 0.00 2.90
1768 2326 3.349022 TGCTGCACATCAATCAATCAGA 58.651 40.909 0.00 0.00 0.00 3.27
1769 2327 3.759618 TGCTGCACATCAATCAATCAGAA 59.240 39.130 0.00 0.00 0.00 3.02
1770 2328 4.401202 TGCTGCACATCAATCAATCAGAAT 59.599 37.500 0.00 0.00 0.00 2.40
1771 2329 4.976731 GCTGCACATCAATCAATCAGAATC 59.023 41.667 0.00 0.00 0.00 2.52
1772 2330 5.449999 GCTGCACATCAATCAATCAGAATCA 60.450 40.000 0.00 0.00 0.00 2.57
1773 2331 6.518208 TGCACATCAATCAATCAGAATCAA 57.482 33.333 0.00 0.00 0.00 2.57
1774 2332 7.107639 TGCACATCAATCAATCAGAATCAAT 57.892 32.000 0.00 0.00 0.00 2.57
1775 2333 7.200455 TGCACATCAATCAATCAGAATCAATC 58.800 34.615 0.00 0.00 0.00 2.67
1776 2334 7.147983 TGCACATCAATCAATCAGAATCAATCA 60.148 33.333 0.00 0.00 0.00 2.57
1777 2335 7.704899 GCACATCAATCAATCAGAATCAATCAA 59.295 33.333 0.00 0.00 0.00 2.57
2164 2883 3.463574 CGAGAAGCAGCGATACGAT 57.536 52.632 0.00 0.00 0.00 3.73
2199 2918 5.865085 AGTGAGCCATGTTTTAGTTAGTGA 58.135 37.500 0.00 0.00 0.00 3.41
2200 2919 6.296026 AGTGAGCCATGTTTTAGTTAGTGAA 58.704 36.000 0.00 0.00 0.00 3.18
2211 2930 3.923017 AGTTAGTGAAGTTGGCATTGC 57.077 42.857 0.00 0.00 0.00 3.56
2214 2933 4.281688 AGTTAGTGAAGTTGGCATTGCAAT 59.718 37.500 5.99 5.99 0.00 3.56
2215 2934 5.476599 AGTTAGTGAAGTTGGCATTGCAATA 59.523 36.000 12.53 0.00 0.00 1.90
2216 2935 4.870123 AGTGAAGTTGGCATTGCAATAA 57.130 36.364 12.53 0.00 0.00 1.40
2217 2936 4.813027 AGTGAAGTTGGCATTGCAATAAG 58.187 39.130 12.53 1.62 0.00 1.73
2218 2937 3.368843 GTGAAGTTGGCATTGCAATAAGC 59.631 43.478 12.53 12.32 45.96 3.09
2235 2954 3.375782 AAGCCTTTCTTTGTGATGTGC 57.624 42.857 0.00 0.00 0.00 4.57
2240 2959 4.301628 CCTTTCTTTGTGATGTGCCTTTC 58.698 43.478 0.00 0.00 0.00 2.62
2248 2967 4.460263 TGTGATGTGCCTTTCTAGTTTGT 58.540 39.130 0.00 0.00 0.00 2.83
2263 2982 6.567050 TCTAGTTTGTACTGACTTGTTTCGT 58.433 36.000 6.95 0.00 35.78 3.85
2298 3017 3.767309 CCTAGAGCTAGGGGGATGTAT 57.233 52.381 14.52 0.00 46.96 2.29
2388 3107 2.182030 GAAGTGTCCGAGGAGGCG 59.818 66.667 0.00 0.00 40.77 5.52
2421 3140 3.384789 TGGAGAATGGGAATACGAGTGAG 59.615 47.826 0.00 0.00 0.00 3.51
2427 3146 1.389609 GGAATACGAGTGAGGCCGGA 61.390 60.000 5.05 0.00 0.00 5.14
2449 3168 3.651904 AGATGATGAAGGGGAGGAAGATG 59.348 47.826 0.00 0.00 0.00 2.90
2452 3171 0.624500 TGAAGGGGAGGAAGATGGGG 60.625 60.000 0.00 0.00 0.00 4.96
2458 3177 1.522569 GAGGAAGATGGGGTGTCCG 59.477 63.158 0.00 0.00 38.76 4.79
2490 3209 2.202570 CGACCCTTGGACGCTACG 60.203 66.667 0.00 0.00 34.05 3.51
2500 3219 3.059898 GACGCTACGTCGAGCTATG 57.940 57.895 8.59 0.00 46.56 2.23
2502 3221 0.582482 ACGCTACGTCGAGCTATGAG 59.418 55.000 8.59 0.00 40.51 2.90
2507 3226 2.175530 ACGTCGAGCTATGAGAAACG 57.824 50.000 0.00 0.00 35.00 3.60
2509 3228 1.063616 CGTCGAGCTATGAGAAACGGA 59.936 52.381 0.00 0.00 0.00 4.69
2513 3232 3.442625 TCGAGCTATGAGAAACGGAAGAA 59.557 43.478 0.00 0.00 0.00 2.52
2514 3233 4.098044 TCGAGCTATGAGAAACGGAAGAAT 59.902 41.667 0.00 0.00 0.00 2.40
2521 3240 7.064728 GCTATGAGAAACGGAAGAATTGTAAGT 59.935 37.037 0.00 0.00 0.00 2.24
2532 3251 6.018180 GGAAGAATTGTAAGTATGGCGGTAAG 60.018 42.308 0.00 0.00 0.00 2.34
2563 3282 2.421424 GCTGAATCGAATTGCCTGTCTT 59.579 45.455 0.00 0.00 0.00 3.01
2598 3317 2.196749 GATGTGCGTGGTCACTATCAG 58.803 52.381 0.00 0.00 37.81 2.90
2658 3377 3.264193 TGGAGCTGTTCAAGGATGTACAT 59.736 43.478 8.43 8.43 36.43 2.29
2673 3392 3.575630 TGTACATCGTCACTTTCAGAGC 58.424 45.455 0.00 0.00 0.00 4.09
2687 3406 0.870393 CAGAGCGTTGTTCAGCATGT 59.130 50.000 0.00 0.00 37.40 3.21
2739 3458 3.503363 TCAAGGGCGCATATGATCAATTC 59.497 43.478 10.83 0.00 0.00 2.17
2745 3464 3.425892 GCGCATATGATCAATTCCAGAGC 60.426 47.826 6.97 0.00 0.00 4.09
2919 3638 2.636830 CAACAGGATGCCAGAGTAAGG 58.363 52.381 0.00 0.00 42.53 2.69
2955 3674 1.000394 CAAAAGCTTGGGTTTACCGGG 60.000 52.381 6.32 0.00 44.64 5.73
2961 3680 2.175035 TTGGGTTTACCGGGAGCGAG 62.175 60.000 6.32 0.00 44.64 5.03
2976 3695 4.687215 GAGGTGGTCAGCGCTGCA 62.687 66.667 32.44 22.16 0.00 4.41
2997 3716 1.407618 AGTGTTTTCGCAAAGGAACCC 59.592 47.619 0.00 0.00 0.00 4.11
3003 3722 2.325082 CGCAAAGGAACCCGACCAG 61.325 63.158 0.00 0.00 0.00 4.00
3018 3737 2.671914 CGACCAGATGGGCATGTTTTTG 60.672 50.000 5.38 0.00 46.09 2.44
3027 3746 0.681175 GCATGTTTTTGGCACTCCCT 59.319 50.000 0.00 0.00 0.00 4.20
3075 3794 5.356190 ACTCAAGATGCTCAATGGTATGTTG 59.644 40.000 0.00 0.00 35.24 3.33
3098 3817 5.662657 TGACTGATCCTCAAATCCTGTATGA 59.337 40.000 0.00 0.00 0.00 2.15
3099 3818 6.156775 TGACTGATCCTCAAATCCTGTATGAA 59.843 38.462 0.00 0.00 0.00 2.57
3105 3824 4.024556 CCTCAAATCCTGTATGAACGCATC 60.025 45.833 0.00 0.00 35.94 3.91
3107 3826 2.890808 ATCCTGTATGAACGCATCGT 57.109 45.000 0.00 0.00 43.97 3.73
3108 3827 1.921243 TCCTGTATGAACGCATCGTG 58.079 50.000 0.00 0.00 39.99 4.35
3117 3836 0.454957 AACGCATCGTGCTTCATTGC 60.455 50.000 8.07 0.00 42.25 3.56
3120 3839 1.796253 CGCATCGTGCTTCATTGCAAT 60.796 47.619 5.99 5.99 45.12 3.56
3123 3842 4.046462 GCATCGTGCTTCATTGCAATAAT 58.954 39.130 12.53 0.00 45.12 1.28
3124 3843 5.214417 GCATCGTGCTTCATTGCAATAATA 58.786 37.500 12.53 0.00 45.12 0.98
3129 3848 6.966632 TCGTGCTTCATTGCAATAATAGTTTC 59.033 34.615 12.53 4.42 45.12 2.78
3256 4280 7.173218 TCGATTTTGAACATAGATGGGCTATTC 59.827 37.037 0.00 0.00 37.72 1.75
3310 4337 5.221880 TGTTTGTCTATGAACATTGCTTGC 58.778 37.500 0.00 0.00 31.30 4.01
3315 4342 3.691118 TCTATGAACATTGCTTGCACTCC 59.309 43.478 0.00 0.00 0.00 3.85
3316 4343 0.961019 TGAACATTGCTTGCACTCCC 59.039 50.000 0.00 0.00 0.00 4.30
3317 4344 1.251251 GAACATTGCTTGCACTCCCT 58.749 50.000 0.00 0.00 0.00 4.20
3318 4345 1.200948 GAACATTGCTTGCACTCCCTC 59.799 52.381 0.00 0.00 0.00 4.30
3319 4346 0.610232 ACATTGCTTGCACTCCCTCC 60.610 55.000 0.00 0.00 0.00 4.30
3320 4347 1.377725 ATTGCTTGCACTCCCTCCG 60.378 57.895 0.00 0.00 0.00 4.63
3321 4348 2.129555 ATTGCTTGCACTCCCTCCGT 62.130 55.000 0.00 0.00 0.00 4.69
3322 4349 2.435059 GCTTGCACTCCCTCCGTC 60.435 66.667 0.00 0.00 0.00 4.79
3323 4350 2.266055 CTTGCACTCCCTCCGTCC 59.734 66.667 0.00 0.00 0.00 4.79
3325 4352 4.631740 TGCACTCCCTCCGTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
3326 4353 4.083862 GCACTCCCTCCGTCCCAC 62.084 72.222 0.00 0.00 0.00 4.61
3328 4355 2.283966 ACTCCCTCCGTCCCACAG 60.284 66.667 0.00 0.00 0.00 3.66
3330 4357 1.000019 CTCCCTCCGTCCCACAGTA 60.000 63.158 0.00 0.00 0.00 2.74
3331 4358 0.397254 CTCCCTCCGTCCCACAGTAT 60.397 60.000 0.00 0.00 0.00 2.12
3332 4359 0.928505 TCCCTCCGTCCCACAGTATA 59.071 55.000 0.00 0.00 0.00 1.47
3333 4360 1.288633 TCCCTCCGTCCCACAGTATAA 59.711 52.381 0.00 0.00 0.00 0.98
3336 4363 3.231818 CCTCCGTCCCACAGTATAAGAT 58.768 50.000 0.00 0.00 0.00 2.40
3338 4365 5.017490 CCTCCGTCCCACAGTATAAGATAT 58.983 45.833 0.00 0.00 0.00 1.63
3339 4366 5.480772 CCTCCGTCCCACAGTATAAGATATT 59.519 44.000 0.00 0.00 0.00 1.28
3340 4367 6.662234 CCTCCGTCCCACAGTATAAGATATTA 59.338 42.308 0.00 0.00 0.00 0.98
3341 4368 7.148052 CCTCCGTCCCACAGTATAAGATATTAG 60.148 44.444 0.00 0.00 0.00 1.73
3342 4369 6.152323 TCCGTCCCACAGTATAAGATATTAGC 59.848 42.308 0.00 0.00 0.00 3.09
3345 4372 7.542477 CGTCCCACAGTATAAGATATTAGCTTG 59.458 40.741 4.47 0.00 0.00 4.01
3346 4373 8.585881 GTCCCACAGTATAAGATATTAGCTTGA 58.414 37.037 4.47 0.00 0.00 3.02
3347 4374 9.154632 TCCCACAGTATAAGATATTAGCTTGAA 57.845 33.333 4.47 0.00 0.00 2.69
3348 4375 9.778741 CCCACAGTATAAGATATTAGCTTGAAA 57.221 33.333 4.47 0.00 0.00 2.69
3439 4467 3.851105 GCTTGCAACTGCTGAACAACTAG 60.851 47.826 0.00 0.00 42.66 2.57
3455 4483 6.648879 ACAACTAGCATAACCAACATTTGT 57.351 33.333 0.00 0.00 0.00 2.83
3480 4508 5.010213 GGAGTGCTAGTTTCTACTATGAGGG 59.990 48.000 0.00 0.00 36.32 4.30
3481 4509 4.896482 AGTGCTAGTTTCTACTATGAGGGG 59.104 45.833 0.00 0.00 36.32 4.79
3498 4526 3.454812 GAGGGGGTATCTGTGTATGTGTT 59.545 47.826 0.00 0.00 0.00 3.32
3499 4527 4.627015 AGGGGGTATCTGTGTATGTGTTA 58.373 43.478 0.00 0.00 0.00 2.41
3501 4529 4.652421 GGGGGTATCTGTGTATGTGTTAGA 59.348 45.833 0.00 0.00 0.00 2.10
3502 4530 5.129815 GGGGGTATCTGTGTATGTGTTAGAA 59.870 44.000 0.00 0.00 0.00 2.10
3503 4531 6.281405 GGGGTATCTGTGTATGTGTTAGAAG 58.719 44.000 0.00 0.00 0.00 2.85
3507 4535 8.033038 GGTATCTGTGTATGTGTTAGAAGTCAA 58.967 37.037 0.00 0.00 0.00 3.18
3508 4536 9.077674 GTATCTGTGTATGTGTTAGAAGTCAAG 57.922 37.037 0.00 0.00 0.00 3.02
3511 4539 7.652105 TCTGTGTATGTGTTAGAAGTCAAGAAC 59.348 37.037 0.00 0.00 0.00 3.01
3519 4548 6.535508 GTGTTAGAAGTCAAGAACACACTCTT 59.464 38.462 10.91 0.00 46.96 2.85
3525 4554 6.222038 AGTCAAGAACACACTCTTTGTCTA 57.778 37.500 0.00 0.00 35.67 2.59
3537 4566 6.926272 ACACTCTTTGTCTAGCTTGTTCTTAG 59.074 38.462 0.00 0.00 29.79 2.18
3539 4568 6.042208 ACTCTTTGTCTAGCTTGTTCTTAGGT 59.958 38.462 0.00 0.00 0.00 3.08
3550 4579 6.070767 AGCTTGTTCTTAGGTGTAGATAGCAA 60.071 38.462 0.00 0.00 0.00 3.91
3553 4582 4.303086 TCTTAGGTGTAGATAGCAACGC 57.697 45.455 0.00 0.00 0.00 4.84
3574 4603 0.802494 ACCCGCTTGCACGAATTTAG 59.198 50.000 0.00 0.00 34.06 1.85
3588 4617 5.297776 CACGAATTTAGAAGGCCATCTGATT 59.702 40.000 20.70 18.23 0.00 2.57
3589 4618 5.888161 ACGAATTTAGAAGGCCATCTGATTT 59.112 36.000 20.70 14.17 0.00 2.17
3590 4619 7.012327 CACGAATTTAGAAGGCCATCTGATTTA 59.988 37.037 20.70 0.00 0.00 1.40
3592 4621 8.571336 CGAATTTAGAAGGCCATCTGATTTATT 58.429 33.333 20.70 9.03 0.00 1.40
3628 4657 6.613699 AGGGATAAAATGCCATCTGATAACA 58.386 36.000 0.09 0.00 44.23 2.41
3630 4677 7.421735 AGGGATAAAATGCCATCTGATAACAGA 60.422 37.037 5.04 5.04 46.17 3.41
3651 4698 4.821805 AGATAAAATGCCCCGTATCTGTTG 59.178 41.667 0.00 0.00 33.15 3.33
3652 4699 1.762708 AAATGCCCCGTATCTGTTGG 58.237 50.000 0.00 0.00 0.00 3.77
3653 4700 0.916086 AATGCCCCGTATCTGTTGGA 59.084 50.000 0.00 0.00 0.00 3.53
3654 4701 0.916086 ATGCCCCGTATCTGTTGGAA 59.084 50.000 0.00 0.00 0.00 3.53
3685 4732 4.264253 TCTCATTCTGTGCATAGGGTTTG 58.736 43.478 10.87 3.99 0.00 2.93
3726 4811 6.609237 TTTCTGTCATCTTGTTCAGACTTG 57.391 37.500 0.00 0.00 36.80 3.16
3728 4813 5.536260 TCTGTCATCTTGTTCAGACTTGAG 58.464 41.667 0.00 0.00 32.83 3.02
3769 4854 3.292460 TGTTTTTCCTTGTCCGGTGAAT 58.708 40.909 0.00 0.00 0.00 2.57
3777 4862 3.369892 CCTTGTCCGGTGAATCTGATTCT 60.370 47.826 25.83 0.00 39.96 2.40
3792 4877 4.537688 TCTGATTCTTGTCTCATCCCCTTT 59.462 41.667 0.00 0.00 0.00 3.11
3801 4886 2.716424 TCTCATCCCCTTTTTCAGGTGT 59.284 45.455 0.00 0.00 42.02 4.16
3810 4895 3.558505 CTTTTTCAGGTGTGCAATCTCG 58.441 45.455 0.00 0.00 0.00 4.04
3826 4911 5.456822 GCAATCTCGCCATTTTTAGCTTAAG 59.543 40.000 0.00 0.00 0.00 1.85
3878 4963 4.808364 GCTCTAATTCAGTCTAGTTGCAGG 59.192 45.833 0.00 0.00 0.00 4.85
3899 4984 5.011586 AGGAATGGCAATTGAAATTTTGGG 58.988 37.500 10.34 0.00 0.00 4.12
3901 4986 5.124297 GGAATGGCAATTGAAATTTTGGGAG 59.876 40.000 10.34 0.00 0.00 4.30
3905 4990 4.631377 GGCAATTGAAATTTTGGGAGTAGC 59.369 41.667 10.34 0.00 0.00 3.58
3910 4995 5.389859 TGAAATTTTGGGAGTAGCACATG 57.610 39.130 0.00 0.00 0.00 3.21
3918 5003 4.917385 TGGGAGTAGCACATGTGTAAATT 58.083 39.130 26.01 9.42 0.00 1.82
3921 5006 5.183140 GGGAGTAGCACATGTGTAAATTGTT 59.817 40.000 26.01 5.31 0.00 2.83
3922 5007 6.373216 GGGAGTAGCACATGTGTAAATTGTTA 59.627 38.462 26.01 0.00 0.00 2.41
3923 5008 7.241376 GGAGTAGCACATGTGTAAATTGTTAC 58.759 38.462 26.01 11.09 40.15 2.50
3924 5009 7.119262 GGAGTAGCACATGTGTAAATTGTTACT 59.881 37.037 26.01 15.26 40.35 2.24
3925 5010 8.029642 AGTAGCACATGTGTAAATTGTTACTC 57.970 34.615 26.01 5.51 40.35 2.59
3926 5011 6.254281 AGCACATGTGTAAATTGTTACTCC 57.746 37.500 26.01 5.09 40.35 3.85
3927 5012 5.183140 AGCACATGTGTAAATTGTTACTCCC 59.817 40.000 26.01 4.46 40.35 4.30
3928 5013 5.183140 GCACATGTGTAAATTGTTACTCCCT 59.817 40.000 26.01 0.00 40.35 4.20
3929 5014 6.294508 GCACATGTGTAAATTGTTACTCCCTT 60.295 38.462 26.01 0.00 40.35 3.95
3930 5015 7.305474 CACATGTGTAAATTGTTACTCCCTTC 58.695 38.462 18.03 0.00 40.35 3.46
3931 5016 6.148811 ACATGTGTAAATTGTTACTCCCTTCG 59.851 38.462 0.00 0.00 40.35 3.79
3932 5017 5.613329 TGTGTAAATTGTTACTCCCTTCGT 58.387 37.500 0.00 0.00 40.35 3.85
3933 5018 6.056884 TGTGTAAATTGTTACTCCCTTCGTT 58.943 36.000 0.00 0.00 40.35 3.85
3934 5019 6.203338 TGTGTAAATTGTTACTCCCTTCGTTC 59.797 38.462 0.00 0.00 40.35 3.95
3935 5020 5.702209 TGTAAATTGTTACTCCCTTCGTTCC 59.298 40.000 0.00 0.00 40.35 3.62
3936 5021 4.360951 AATTGTTACTCCCTTCGTTCCA 57.639 40.909 0.00 0.00 0.00 3.53
3937 5022 3.842007 TTGTTACTCCCTTCGTTCCAA 57.158 42.857 0.00 0.00 0.00 3.53
3938 5023 3.842007 TGTTACTCCCTTCGTTCCAAA 57.158 42.857 0.00 0.00 0.00 3.28
3939 5024 4.360951 TGTTACTCCCTTCGTTCCAAAT 57.639 40.909 0.00 0.00 0.00 2.32
3940 5025 4.721132 TGTTACTCCCTTCGTTCCAAATT 58.279 39.130 0.00 0.00 0.00 1.82
3941 5026 5.867330 TGTTACTCCCTTCGTTCCAAATTA 58.133 37.500 0.00 0.00 0.00 1.40
3942 5027 5.702209 TGTTACTCCCTTCGTTCCAAATTAC 59.298 40.000 0.00 0.00 0.00 1.89
3943 5028 4.635699 ACTCCCTTCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
3944 5029 4.576879 ACTCCCTTCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
3945 5030 4.041198 ACTCCCTTCGTTCCAAATTACTCA 59.959 41.667 0.00 0.00 0.00 3.41
3946 5031 5.174037 TCCCTTCGTTCCAAATTACTCAT 57.826 39.130 0.00 0.00 0.00 2.90
3947 5032 5.183228 TCCCTTCGTTCCAAATTACTCATC 58.817 41.667 0.00 0.00 0.00 2.92
3948 5033 4.941263 CCCTTCGTTCCAAATTACTCATCA 59.059 41.667 0.00 0.00 0.00 3.07
3949 5034 5.590259 CCCTTCGTTCCAAATTACTCATCAT 59.410 40.000 0.00 0.00 0.00 2.45
3950 5035 6.458751 CCCTTCGTTCCAAATTACTCATCATG 60.459 42.308 0.00 0.00 0.00 3.07
3951 5036 6.435430 TTCGTTCCAAATTACTCATCATGG 57.565 37.500 0.00 0.00 0.00 3.66
3952 5037 5.496556 TCGTTCCAAATTACTCATCATGGT 58.503 37.500 0.00 0.00 0.00 3.55
3953 5038 5.943416 TCGTTCCAAATTACTCATCATGGTT 59.057 36.000 0.00 0.00 0.00 3.67
3954 5039 6.432783 TCGTTCCAAATTACTCATCATGGTTT 59.567 34.615 0.00 0.00 0.00 3.27
3955 5040 7.040062 TCGTTCCAAATTACTCATCATGGTTTT 60.040 33.333 0.00 0.00 0.00 2.43
3956 5041 8.240682 CGTTCCAAATTACTCATCATGGTTTTA 58.759 33.333 0.00 0.00 0.00 1.52
3957 5042 9.573133 GTTCCAAATTACTCATCATGGTTTTAG 57.427 33.333 0.00 0.00 0.00 1.85
3958 5043 8.877864 TCCAAATTACTCATCATGGTTTTAGT 57.122 30.769 0.00 0.00 0.00 2.24
3959 5044 9.308000 TCCAAATTACTCATCATGGTTTTAGTT 57.692 29.630 0.00 0.00 0.00 2.24
3960 5045 9.573133 CCAAATTACTCATCATGGTTTTAGTTC 57.427 33.333 0.00 0.00 0.00 3.01
3963 5048 5.862924 ACTCATCATGGTTTTAGTTCACG 57.137 39.130 0.00 0.00 0.00 4.35
3964 5049 5.547465 ACTCATCATGGTTTTAGTTCACGA 58.453 37.500 0.00 0.00 0.00 4.35
3965 5050 5.408604 ACTCATCATGGTTTTAGTTCACGAC 59.591 40.000 0.00 0.00 0.00 4.34
3966 5051 4.387559 TCATCATGGTTTTAGTTCACGACG 59.612 41.667 0.00 0.00 0.00 5.12
3967 5052 3.979948 TCATGGTTTTAGTTCACGACGA 58.020 40.909 0.00 0.00 0.00 4.20
3968 5053 3.985279 TCATGGTTTTAGTTCACGACGAG 59.015 43.478 0.00 0.00 0.00 4.18
3969 5054 3.441496 TGGTTTTAGTTCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3970 5055 3.374745 TGGTTTTAGTTCACGACGAGTC 58.625 45.455 0.00 0.00 0.00 3.36
3971 5056 2.728318 GGTTTTAGTTCACGACGAGTCC 59.272 50.000 0.00 0.00 0.00 3.85
3972 5057 2.320805 TTTAGTTCACGACGAGTCCG 57.679 50.000 0.00 0.00 42.50 4.79
3986 5071 2.597305 CGAGTCCGTTCCAAATTACTCG 59.403 50.000 8.10 8.10 46.77 4.18
3987 5072 3.582780 GAGTCCGTTCCAAATTACTCGT 58.417 45.455 0.00 0.00 0.00 4.18
3988 5073 3.582780 AGTCCGTTCCAAATTACTCGTC 58.417 45.455 0.00 0.00 0.00 4.20
3989 5074 3.006110 AGTCCGTTCCAAATTACTCGTCA 59.994 43.478 0.00 0.00 0.00 4.35
3990 5075 3.930848 GTCCGTTCCAAATTACTCGTCAT 59.069 43.478 0.00 0.00 0.00 3.06
3991 5076 3.930229 TCCGTTCCAAATTACTCGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
3992 5077 3.063452 CCGTTCCAAATTACTCGTCATGG 59.937 47.826 0.00 0.00 0.00 3.66
3993 5078 3.682858 CGTTCCAAATTACTCGTCATGGT 59.317 43.478 0.00 0.00 0.00 3.55
3994 5079 4.153475 CGTTCCAAATTACTCGTCATGGTT 59.847 41.667 0.00 0.00 0.00 3.67
3995 5080 5.334569 CGTTCCAAATTACTCGTCATGGTTT 60.335 40.000 0.00 0.00 0.00 3.27
3996 5081 6.443792 GTTCCAAATTACTCGTCATGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
3997 5082 7.571613 CGTTCCAAATTACTCGTCATGGTTTTA 60.572 37.037 0.00 0.00 0.00 1.52
3998 5083 7.372451 TCCAAATTACTCGTCATGGTTTTAG 57.628 36.000 0.00 0.00 0.00 1.85
3999 5084 6.938030 TCCAAATTACTCGTCATGGTTTTAGT 59.062 34.615 0.00 0.00 0.00 2.24
4000 5085 7.446013 TCCAAATTACTCGTCATGGTTTTAGTT 59.554 33.333 0.00 0.00 0.00 2.24
4001 5086 7.749126 CCAAATTACTCGTCATGGTTTTAGTTC 59.251 37.037 0.00 0.00 0.00 3.01
4002 5087 7.972832 AATTACTCGTCATGGTTTTAGTTCA 57.027 32.000 0.00 0.00 0.00 3.18
4003 5088 6.774354 TTACTCGTCATGGTTTTAGTTCAC 57.226 37.500 0.00 0.00 0.00 3.18
4004 5089 3.739300 ACTCGTCATGGTTTTAGTTCACG 59.261 43.478 0.00 0.00 0.00 4.35
4005 5090 3.979948 TCGTCATGGTTTTAGTTCACGA 58.020 40.909 0.00 0.00 32.91 4.35
4006 5091 3.737266 TCGTCATGGTTTTAGTTCACGAC 59.263 43.478 0.00 0.00 30.50 4.34
4007 5092 3.421312 CGTCATGGTTTTAGTTCACGACG 60.421 47.826 0.00 0.00 37.91 5.12
4008 5093 3.737266 GTCATGGTTTTAGTTCACGACGA 59.263 43.478 0.00 0.00 0.00 4.20
4009 5094 3.985279 TCATGGTTTTAGTTCACGACGAG 59.015 43.478 0.00 0.00 0.00 4.18
4010 5095 3.441496 TGGTTTTAGTTCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
4011 5096 4.566545 TGGTTTTAGTTCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
4012 5097 4.930963 TGGTTTTAGTTCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
4013 5098 5.531634 TGGTTTTAGTTCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
4014 5099 5.984926 TGGTTTTAGTTCACGACGAGTAATT 59.015 36.000 0.00 0.00 0.00 1.40
4015 5100 6.479660 TGGTTTTAGTTCACGACGAGTAATTT 59.520 34.615 0.00 0.00 0.00 1.82
4016 5101 6.788930 GGTTTTAGTTCACGACGAGTAATTTG 59.211 38.462 0.00 0.00 0.00 2.32
4017 5102 6.456447 TTTAGTTCACGACGAGTAATTTGG 57.544 37.500 0.00 0.00 0.00 3.28
4018 5103 4.247267 AGTTCACGACGAGTAATTTGGA 57.753 40.909 0.00 0.00 0.00 3.53
4019 5104 4.624015 AGTTCACGACGAGTAATTTGGAA 58.376 39.130 0.00 0.00 0.00 3.53
4020 5105 4.446719 AGTTCACGACGAGTAATTTGGAAC 59.553 41.667 0.00 0.00 32.03 3.62
4021 5106 2.981805 TCACGACGAGTAATTTGGAACG 59.018 45.455 0.00 0.00 0.00 3.95
4022 5107 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
4023 5108 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4024 5109 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4025 5110 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4026 5111 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4027 5112 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4028 5113 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4045 5130 5.397672 GGAGGGAGTATATATCTAGCGTCCA 60.398 48.000 0.00 0.00 0.00 4.02
4049 5134 6.773685 GGGAGTATATATCTAGCGTCCATCTT 59.226 42.308 0.00 0.00 0.00 2.40
4062 5147 7.108841 AGCGTCCATCTTAAGTGTTCTAATA 57.891 36.000 1.63 0.00 0.00 0.98
4063 5148 7.203910 AGCGTCCATCTTAAGTGTTCTAATAG 58.796 38.462 1.63 0.00 0.00 1.73
4067 5152 8.639761 GTCCATCTTAAGTGTTCTAATAGGCTA 58.360 37.037 1.63 0.00 0.00 3.93
4069 5154 9.646427 CCATCTTAAGTGTTCTAATAGGCTATC 57.354 37.037 7.63 0.00 0.00 2.08
4070 5155 9.646427 CATCTTAAGTGTTCTAATAGGCTATCC 57.354 37.037 7.63 0.00 0.00 2.59
4073 5158 8.548880 TTAAGTGTTCTAATAGGCTATCCTGT 57.451 34.615 7.63 0.00 44.08 4.00
4075 5160 8.548880 AAGTGTTCTAATAGGCTATCCTGTTA 57.451 34.615 7.63 0.00 41.33 2.41
4077 5162 8.422566 AGTGTTCTAATAGGCTATCCTGTTAAC 58.577 37.037 7.63 0.00 42.88 2.01
4078 5163 8.422566 GTGTTCTAATAGGCTATCCTGTTAACT 58.577 37.037 7.63 0.00 42.88 2.24
4080 5165 8.639761 GTTCTAATAGGCTATCCTGTTAACTGA 58.360 37.037 13.56 7.37 42.88 3.41
4081 5166 8.410673 TCTAATAGGCTATCCTGTTAACTGAG 57.589 38.462 13.56 4.97 42.88 3.35
4082 5167 8.225416 TCTAATAGGCTATCCTGTTAACTGAGA 58.775 37.037 13.56 9.41 42.88 3.27
4115 5241 3.126703 TTTCCTTGCACCGGGCTCA 62.127 57.895 6.32 0.00 45.15 4.26
4134 5309 0.617820 AGTGGAAGATGGTACGGCCT 60.618 55.000 0.00 0.00 38.35 5.19
4135 5310 0.462047 GTGGAAGATGGTACGGCCTG 60.462 60.000 0.00 0.00 38.35 4.85
4137 5312 0.105039 GGAAGATGGTACGGCCTGAG 59.895 60.000 0.00 0.00 38.35 3.35
4138 5313 0.105039 GAAGATGGTACGGCCTGAGG 59.895 60.000 0.00 0.00 38.35 3.86
4180 5355 1.004161 TCCGATTCCAACAGCATTCCA 59.996 47.619 0.00 0.00 0.00 3.53
4182 5357 2.428171 CCGATTCCAACAGCATTCCAAT 59.572 45.455 0.00 0.00 0.00 3.16
4184 5359 3.489738 CGATTCCAACAGCATTCCAATCC 60.490 47.826 0.00 0.00 0.00 3.01
4186 5361 3.104519 TCCAACAGCATTCCAATCCAT 57.895 42.857 0.00 0.00 0.00 3.41
4192 5367 3.952323 ACAGCATTCCAATCCATTCTGAG 59.048 43.478 0.00 0.00 0.00 3.35
4193 5368 3.952323 CAGCATTCCAATCCATTCTGAGT 59.048 43.478 0.00 0.00 0.00 3.41
4195 5370 4.079901 AGCATTCCAATCCATTCTGAGTCT 60.080 41.667 0.00 0.00 0.00 3.24
4196 5371 4.643784 GCATTCCAATCCATTCTGAGTCTT 59.356 41.667 0.00 0.00 0.00 3.01
4197 5372 5.126707 GCATTCCAATCCATTCTGAGTCTTT 59.873 40.000 0.00 0.00 0.00 2.52
4199 5374 5.503634 TCCAATCCATTCTGAGTCTTTGA 57.496 39.130 0.00 0.00 0.00 2.69
4225 5865 0.249447 GAGCAAAACAACAGCCACCC 60.249 55.000 0.00 0.00 0.00 4.61
4236 5876 0.598065 CAGCCACCCAAAACTGTAGC 59.402 55.000 0.00 0.00 0.00 3.58
4246 5886 3.369147 CCAAAACTGTAGCTCATCAGACG 59.631 47.826 16.67 0.00 35.84 4.18
4271 5941 5.974751 CGTAGCAAGGAAATTACTCTCTCTC 59.025 44.000 0.00 0.00 0.00 3.20
4275 5945 6.096846 AGCAAGGAAATTACTCTCTCTCTCTC 59.903 42.308 0.00 0.00 0.00 3.20
4276 5946 6.096846 GCAAGGAAATTACTCTCTCTCTCTCT 59.903 42.308 0.00 0.00 0.00 3.10
4277 5947 7.682021 GCAAGGAAATTACTCTCTCTCTCTCTC 60.682 44.444 0.00 0.00 0.00 3.20
4278 5948 7.213178 AGGAAATTACTCTCTCTCTCTCTCT 57.787 40.000 0.00 0.00 0.00 3.10
4279 5949 7.283329 AGGAAATTACTCTCTCTCTCTCTCTC 58.717 42.308 0.00 0.00 0.00 3.20
4281 5951 7.442666 GGAAATTACTCTCTCTCTCTCTCTCTC 59.557 44.444 0.00 0.00 0.00 3.20
4283 5953 6.716934 TTACTCTCTCTCTCTCTCTCTCTC 57.283 45.833 0.00 0.00 0.00 3.20
4287 5957 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4288 5958 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4289 5959 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4290 5960 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4291 5961 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4292 5962 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4293 5963 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4294 5964 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4295 5965 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4296 5966 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4297 5967 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4298 5968 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4299 5969 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4300 5970 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4301 5971 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4302 5972 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
4307 5977 5.886609 TCTCTCTCTCTCTCTCTCCAAAAA 58.113 41.667 0.00 0.00 0.00 1.94
4328 5998 4.422073 AAACTGTTCAGTGTCCTGATGA 57.578 40.909 6.22 0.00 46.80 2.92
4330 6000 4.199432 ACTGTTCAGTGTCCTGATGATC 57.801 45.455 4.58 0.00 46.80 2.92
4331 6001 3.580022 ACTGTTCAGTGTCCTGATGATCA 59.420 43.478 0.00 0.00 46.80 2.92
4334 6024 3.881937 TCAGTGTCCTGATGATCAGTG 57.118 47.619 20.06 11.77 42.80 3.66
4337 6027 0.176449 TGTCCTGATGATCAGTGGCG 59.824 55.000 20.06 5.96 42.80 5.69
4362 6056 7.898309 CGTGAGCTAATTATGTTACTTTGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
4378 6072 6.910433 ACTTTGTCACGAAAATACACACAATC 59.090 34.615 0.00 0.00 0.00 2.67
4387 6081 6.538742 CGAAAATACACACAATCCCACTAGAT 59.461 38.462 0.00 0.00 0.00 1.98
4399 6096 6.824958 ATCCCACTAGATAACAAAGCCTTA 57.175 37.500 0.00 0.00 0.00 2.69
4419 6116 7.976734 AGCCTTACAATATATAAGCTCGATGAC 59.023 37.037 0.00 0.00 0.00 3.06
4421 6118 8.251026 CCTTACAATATATAAGCTCGATGACCA 58.749 37.037 0.00 0.00 0.00 4.02
4425 6122 7.039714 ACAATATATAAGCTCGATGACCACAGA 60.040 37.037 0.00 0.00 0.00 3.41
4429 6126 3.724508 AGCTCGATGACCACAGATTAG 57.275 47.619 0.00 0.00 0.00 1.73
4432 6129 3.622828 CTCGATGACCACAGATTAGTCG 58.377 50.000 0.00 0.00 33.09 4.18
4440 6153 9.862371 GATGACCACAGATTAGTCGATATATTT 57.138 33.333 0.00 0.00 33.09 1.40
4466 6179 5.741011 AGTTTCAACCTCAAACTGTGTAGA 58.259 37.500 0.00 0.00 41.55 2.59
4468 6181 6.093633 AGTTTCAACCTCAAACTGTGTAGAAC 59.906 38.462 0.00 0.00 41.55 3.01
4469 6182 5.353394 TCAACCTCAAACTGTGTAGAACT 57.647 39.130 0.00 0.00 0.00 3.01
4471 6184 5.584649 TCAACCTCAAACTGTGTAGAACTTG 59.415 40.000 0.00 0.00 0.00 3.16
4472 6185 3.877508 ACCTCAAACTGTGTAGAACTTGC 59.122 43.478 0.00 0.00 0.00 4.01
4473 6186 4.130118 CCTCAAACTGTGTAGAACTTGCT 58.870 43.478 0.00 0.00 0.00 3.91
4474 6187 4.024556 CCTCAAACTGTGTAGAACTTGCTG 60.025 45.833 0.00 0.00 0.00 4.41
4475 6188 3.312421 TCAAACTGTGTAGAACTTGCTGC 59.688 43.478 0.00 0.00 0.00 5.25
4477 6190 3.131709 ACTGTGTAGAACTTGCTGCAT 57.868 42.857 1.84 0.00 33.16 3.96
4488 6203 2.162208 ACTTGCTGCATCCATACAAACG 59.838 45.455 1.84 0.00 0.00 3.60
4490 6205 2.009051 TGCTGCATCCATACAAACGAG 58.991 47.619 0.00 0.00 0.00 4.18
4502 6217 1.531149 ACAAACGAGCTGGTGAATTCG 59.469 47.619 0.71 0.00 38.88 3.34
4505 6220 1.016130 ACGAGCTGGTGAATTCGCAG 61.016 55.000 20.06 15.26 36.58 5.18
4510 6227 1.266718 GCTGGTGAATTCGCAGACAAA 59.733 47.619 20.06 0.00 34.32 2.83
4511 6228 2.666619 GCTGGTGAATTCGCAGACAAAG 60.667 50.000 20.06 8.48 34.32 2.77
4514 6231 3.629855 TGGTGAATTCGCAGACAAAGAAA 59.370 39.130 20.06 0.00 34.32 2.52
4536 6253 1.313812 TGCCATGAATGCGCACATGA 61.314 50.000 31.46 16.76 44.28 3.07
4537 6254 0.868602 GCCATGAATGCGCACATGAC 60.869 55.000 31.46 21.92 44.28 3.06
4550 6267 0.392706 ACATGACGTGCACAGAGGAA 59.607 50.000 18.64 0.00 0.00 3.36
4566 6286 2.294512 GAGGAAGCACCAGTTGAAAAGG 59.705 50.000 2.96 0.00 42.04 3.11
4579 6299 5.049405 CAGTTGAAAAGGAAACGTAGAGCAT 60.049 40.000 0.00 0.00 0.00 3.79
4583 6303 6.894828 TGAAAAGGAAACGTAGAGCATAAAC 58.105 36.000 0.00 0.00 0.00 2.01
4679 6400 7.258022 TGACATCAAATATCCACAAATACCG 57.742 36.000 0.00 0.00 0.00 4.02
4798 6522 5.460419 CCGCTTACTGAGATACTAGCAAAAG 59.540 44.000 0.00 0.00 0.00 2.27
4892 6617 3.256879 ACGAGACATGTCAATGACTGAGT 59.743 43.478 27.02 9.87 38.64 3.41
4893 6618 4.459337 ACGAGACATGTCAATGACTGAGTA 59.541 41.667 27.02 0.00 38.64 2.59
4899 6624 2.177977 GTCAATGACTGAGTAGACGCG 58.822 52.381 3.53 3.53 33.60 6.01
4967 6692 4.082571 ACTTACAATCATGAACAAGCTGGC 60.083 41.667 0.00 0.00 0.00 4.85
5232 6957 4.126437 TCTCAAGATTCAGCAACAACGAA 58.874 39.130 0.00 0.00 0.00 3.85
5233 6958 4.024893 TCTCAAGATTCAGCAACAACGAAC 60.025 41.667 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.586425 GTGGCCACACCTGCATAATAT 58.414 47.619 31.23 0.00 41.84 1.28
24 25 2.051334 GTGGCCACACCTGCATAATA 57.949 50.000 31.23 0.00 41.84 0.98
49 50 3.859443 AGAAGAGCAGTTCATACAGCAG 58.141 45.455 1.40 0.00 39.08 4.24
160 161 2.173669 CCTGGTGTTATCAGGCGCG 61.174 63.158 0.00 0.00 44.29 6.86
188 189 4.618920 AGTATCAGGTGGTTTCGAAAGT 57.381 40.909 11.66 0.00 0.00 2.66
295 299 3.572584 CTCCATTGCTTCAAGTTTCAGC 58.427 45.455 0.00 0.00 0.00 4.26
296 300 3.613432 GCCTCCATTGCTTCAAGTTTCAG 60.613 47.826 0.00 0.00 0.00 3.02
297 301 2.297033 GCCTCCATTGCTTCAAGTTTCA 59.703 45.455 0.00 0.00 0.00 2.69
298 302 2.560105 AGCCTCCATTGCTTCAAGTTTC 59.440 45.455 0.00 0.00 34.87 2.78
305 312 3.205784 ACTATGAGCCTCCATTGCTTC 57.794 47.619 0.00 0.00 39.69 3.86
358 365 6.477688 TCTGTACACAACTGTAAAGTACAAGC 59.522 38.462 15.36 0.00 42.86 4.01
398 405 0.452784 CGCTGTTAGAAACAAGGCGC 60.453 55.000 11.68 0.00 44.88 6.53
430 437 7.290248 ACCAGTAAATACTACTAGCATCCATGT 59.710 37.037 0.00 0.00 34.13 3.21
476 487 3.059461 TCAAACAACATAGCGTTTCCGTC 60.059 43.478 0.00 0.00 34.86 4.79
484 495 6.305399 CCTTTACAATGTCAAACAACATAGCG 59.695 38.462 0.00 0.00 38.92 4.26
546 560 2.225019 GTGAGCACACAAGAACATCAGG 59.775 50.000 9.58 0.00 45.32 3.86
547 561 3.532892 GTGAGCACACAAGAACATCAG 57.467 47.619 9.58 0.00 45.32 2.90
574 588 5.470098 TCTTCTGTGGCTAGACAAAATCAAC 59.530 40.000 0.00 0.00 0.00 3.18
660 676 4.631813 AGAATCTTGACCGTTGATAACAGC 59.368 41.667 0.00 0.00 0.00 4.40
740 756 4.034285 TGCGATCCAGGAGATATACTCA 57.966 45.455 0.00 0.00 46.54 3.41
741 757 6.294453 CCATATGCGATCCAGGAGATATACTC 60.294 46.154 0.00 0.00 44.24 2.59
742 758 5.538053 CCATATGCGATCCAGGAGATATACT 59.462 44.000 0.00 0.00 34.42 2.12
743 759 5.536538 TCCATATGCGATCCAGGAGATATAC 59.463 44.000 0.00 0.00 34.42 1.47
744 760 5.705400 TCCATATGCGATCCAGGAGATATA 58.295 41.667 0.00 0.00 34.42 0.86
745 761 4.550669 TCCATATGCGATCCAGGAGATAT 58.449 43.478 0.00 0.00 34.42 1.63
746 762 3.956848 CTCCATATGCGATCCAGGAGATA 59.043 47.826 0.00 0.00 44.12 1.98
747 763 2.765135 CTCCATATGCGATCCAGGAGAT 59.235 50.000 0.00 0.00 44.12 2.75
755 771 1.723542 CAAGCGTCTCCATATGCGATC 59.276 52.381 0.00 0.00 36.47 3.69
842 858 6.274001 TGAACGCTCAATCTAATTCGATTC 57.726 37.500 2.36 0.00 31.52 2.52
916 932 1.468985 TTGGCAATGGTGGTAATCCG 58.531 50.000 0.00 0.00 36.30 4.18
949 965 4.767409 GGTATGGGCTTTGGATTAGGATTC 59.233 45.833 0.00 0.00 0.00 2.52
993 1010 1.317431 TACCTCATCCACCCACGTCG 61.317 60.000 0.00 0.00 0.00 5.12
995 1012 0.543410 TGTACCTCATCCACCCACGT 60.543 55.000 0.00 0.00 0.00 4.49
996 1013 0.830648 ATGTACCTCATCCACCCACG 59.169 55.000 0.00 0.00 29.76 4.94
997 1014 2.622064 GATGTACCTCATCCACCCAC 57.378 55.000 0.00 0.00 45.05 4.61
1074 1091 2.123382 GGGGGAGGAGTACCGGAG 60.123 72.222 9.46 0.00 41.83 4.63
1093 1110 1.452108 GAATCCGGAGCAGGGGTTG 60.452 63.158 11.34 0.00 0.00 3.77
1094 1111 2.680370 GGAATCCGGAGCAGGGGTT 61.680 63.158 11.34 0.00 0.00 4.11
1095 1112 3.090532 GGAATCCGGAGCAGGGGT 61.091 66.667 11.34 0.00 0.00 4.95
1540 2096 2.111384 GAGGTAATCTGAGGCAGGACA 58.889 52.381 0.00 0.00 31.51 4.02
1577 2133 2.278923 GACGGCGAGCTCTAAGGC 60.279 66.667 16.62 7.49 0.00 4.35
1616 2174 0.397254 CGTAGGTGGAGGATGGGTCT 60.397 60.000 0.00 0.00 0.00 3.85
1653 2211 9.120538 GGGAAAAATAATAATCAGTGACTGCTA 57.879 33.333 7.93 2.23 0.00 3.49
1658 2216 9.586435 CAAAGGGGAAAAATAATAATCAGTGAC 57.414 33.333 0.00 0.00 0.00 3.67
1668 2226 5.478407 CGTGCTTCAAAGGGGAAAAATAAT 58.522 37.500 0.00 0.00 0.00 1.28
1669 2227 4.797933 GCGTGCTTCAAAGGGGAAAAATAA 60.798 41.667 0.00 0.00 0.00 1.40
1670 2228 3.305744 GCGTGCTTCAAAGGGGAAAAATA 60.306 43.478 0.00 0.00 0.00 1.40
1671 2229 2.547855 GCGTGCTTCAAAGGGGAAAAAT 60.548 45.455 0.00 0.00 0.00 1.82
1673 2231 0.387565 GCGTGCTTCAAAGGGGAAAA 59.612 50.000 0.00 0.00 0.00 2.29
1675 2233 1.150536 AGCGTGCTTCAAAGGGGAA 59.849 52.632 0.00 0.00 0.00 3.97
1676 2234 1.600636 CAGCGTGCTTCAAAGGGGA 60.601 57.895 0.00 0.00 0.00 4.81
1677 2235 2.956987 CAGCGTGCTTCAAAGGGG 59.043 61.111 0.00 0.00 0.00 4.79
1679 2237 2.127118 CGCAGCGTGCTTCAAAGG 60.127 61.111 6.65 0.00 42.25 3.11
1694 2252 0.235144 CTATTCATGCAGCAGAGCGC 59.765 55.000 0.00 0.00 42.91 5.92
1695 2253 1.260825 CACTATTCATGCAGCAGAGCG 59.739 52.381 0.00 0.00 37.31 5.03
1705 2263 1.788258 AGCGCGGATCACTATTCATG 58.212 50.000 8.83 0.00 0.00 3.07
1706 2264 2.138320 CAAGCGCGGATCACTATTCAT 58.862 47.619 8.83 0.00 0.00 2.57
1710 2268 0.598680 GAGCAAGCGCGGATCACTAT 60.599 55.000 8.83 0.00 45.49 2.12
1720 2278 0.301987 GAACTTATCGGAGCAAGCGC 59.698 55.000 0.00 0.00 38.99 5.92
1723 2281 4.437239 AGTCATGAACTTATCGGAGCAAG 58.563 43.478 0.00 1.70 33.03 4.01
1727 2285 4.047822 GCAGAGTCATGAACTTATCGGAG 58.952 47.826 0.00 0.00 38.74 4.63
1729 2287 3.801050 CAGCAGAGTCATGAACTTATCGG 59.199 47.826 0.00 0.00 38.74 4.18
1731 2289 4.033817 GTGCAGCAGAGTCATGAACTTATC 59.966 45.833 0.00 0.00 38.74 1.75
1733 2291 3.244181 TGTGCAGCAGAGTCATGAACTTA 60.244 43.478 0.00 0.00 38.74 2.24
1742 2300 2.353323 TGATTGATGTGCAGCAGAGTC 58.647 47.619 0.00 0.00 0.00 3.36
1800 2358 9.807921 TCTGATCCATCACTACAACATAGTATA 57.192 33.333 0.00 0.00 32.50 1.47
1803 2361 6.462207 GCTCTGATCCATCACTACAACATAGT 60.462 42.308 0.00 0.00 32.50 2.12
1804 2362 5.925397 GCTCTGATCCATCACTACAACATAG 59.075 44.000 0.00 0.00 32.50 2.23
1842 2561 4.335647 CTCTGCCCCGCACAACCT 62.336 66.667 0.00 0.00 33.79 3.50
1852 2571 1.676967 CTTGTTCCTGCCTCTGCCC 60.677 63.158 0.00 0.00 36.33 5.36
2164 2883 1.416030 TGGCTCACTTTGCAGTACTCA 59.584 47.619 0.00 0.00 0.00 3.41
2199 2918 2.976589 GGCTTATTGCAATGCCAACTT 58.023 42.857 27.44 3.34 44.34 2.66
2200 2919 2.678471 GGCTTATTGCAATGCCAACT 57.322 45.000 27.44 4.04 44.34 3.16
2211 2930 5.346822 GCACATCACAAAGAAAGGCTTATTG 59.653 40.000 14.91 14.91 35.24 1.90
2214 2933 3.255642 GGCACATCACAAAGAAAGGCTTA 59.744 43.478 0.00 0.00 35.24 3.09
2215 2934 2.036346 GGCACATCACAAAGAAAGGCTT 59.964 45.455 0.00 0.00 38.88 4.35
2216 2935 1.615392 GGCACATCACAAAGAAAGGCT 59.385 47.619 0.00 0.00 0.00 4.58
2217 2936 1.615392 AGGCACATCACAAAGAAAGGC 59.385 47.619 0.00 0.00 0.00 4.35
2218 2937 4.038402 AGAAAGGCACATCACAAAGAAAGG 59.962 41.667 0.00 0.00 0.00 3.11
2219 2938 5.192327 AGAAAGGCACATCACAAAGAAAG 57.808 39.130 0.00 0.00 0.00 2.62
2220 2939 5.827797 ACTAGAAAGGCACATCACAAAGAAA 59.172 36.000 0.00 0.00 0.00 2.52
2221 2940 5.376625 ACTAGAAAGGCACATCACAAAGAA 58.623 37.500 0.00 0.00 0.00 2.52
2235 2954 7.787725 AACAAGTCAGTACAAACTAGAAAGG 57.212 36.000 0.00 0.00 33.48 3.11
2240 2959 6.696148 AGACGAAACAAGTCAGTACAAACTAG 59.304 38.462 0.00 0.00 40.84 2.57
2248 2967 3.067601 TGCAGAGACGAAACAAGTCAGTA 59.932 43.478 0.00 0.00 40.84 2.74
2286 3005 2.293924 TGGAACACCATACATCCCCCTA 60.294 50.000 0.00 0.00 0.00 3.53
2298 3017 5.457012 CGAAATGCGGAAATGGAACACCA 62.457 47.826 0.00 0.00 37.55 4.17
2388 3107 1.144057 ATTCTCCATGTCGGCGGTC 59.856 57.895 7.21 1.06 33.14 4.79
2421 3140 1.072159 CCCTTCATCATCTCCGGCC 59.928 63.158 0.00 0.00 0.00 6.13
2427 3146 3.428063 TCTTCCTCCCCTTCATCATCT 57.572 47.619 0.00 0.00 0.00 2.90
2490 3209 2.846039 TCCGTTTCTCATAGCTCGAC 57.154 50.000 0.00 0.00 0.00 4.20
2500 3219 7.676572 GCCATACTTACAATTCTTCCGTTTCTC 60.677 40.741 0.00 0.00 0.00 2.87
2502 3221 6.255950 GCCATACTTACAATTCTTCCGTTTC 58.744 40.000 0.00 0.00 0.00 2.78
2507 3226 4.196971 ACCGCCATACTTACAATTCTTCC 58.803 43.478 0.00 0.00 0.00 3.46
2509 3228 6.646267 TCTTACCGCCATACTTACAATTCTT 58.354 36.000 0.00 0.00 0.00 2.52
2513 3232 4.652421 TCCTCTTACCGCCATACTTACAAT 59.348 41.667 0.00 0.00 0.00 2.71
2514 3233 4.025360 TCCTCTTACCGCCATACTTACAA 58.975 43.478 0.00 0.00 0.00 2.41
2521 3240 2.317040 CCTCTTCCTCTTACCGCCATA 58.683 52.381 0.00 0.00 0.00 2.74
2532 3251 1.115467 TCGATTCAGCCCTCTTCCTC 58.885 55.000 0.00 0.00 0.00 3.71
2563 3282 0.677288 ACATCCTTCAACGTGTCCGA 59.323 50.000 0.00 0.00 37.88 4.55
2628 3347 0.391661 TGAACAGCTCCATCGCTTCC 60.392 55.000 0.00 0.00 38.41 3.46
2658 3377 1.202371 ACAACGCTCTGAAAGTGACGA 60.202 47.619 0.00 0.00 38.92 4.20
2673 3392 1.154413 GCCGACATGCTGAACAACG 60.154 57.895 0.00 0.00 0.00 4.10
2739 3458 1.135859 GCATTCTGAACAACGCTCTGG 60.136 52.381 0.00 0.00 0.00 3.86
2745 3464 0.512518 TGCTCGCATTCTGAACAACG 59.487 50.000 0.00 0.00 0.00 4.10
2779 3498 1.202915 TGCATCCTTGAACTGCTCCAA 60.203 47.619 0.00 0.00 36.84 3.53
2961 3680 3.730761 CTTGCAGCGCTGACCACC 61.731 66.667 40.21 22.19 0.00 4.61
2976 3695 2.159156 GGGTTCCTTTGCGAAAACACTT 60.159 45.455 4.12 0.00 0.00 3.16
2997 3716 1.176527 AAAACATGCCCATCTGGTCG 58.823 50.000 0.00 0.00 36.04 4.79
3003 3722 1.002315 AGTGCCAAAAACATGCCCATC 59.998 47.619 0.00 0.00 0.00 3.51
3018 3737 2.420687 CCTGTAGATTTCAGGGAGTGCC 60.421 54.545 0.00 0.00 46.03 5.01
3027 3746 4.942944 TGTACTCCCTCCTGTAGATTTCA 58.057 43.478 0.00 0.00 0.00 2.69
3105 3824 6.746822 TGAAACTATTATTGCAATGAAGCACG 59.253 34.615 22.27 6.31 45.61 5.34
3107 3826 7.259882 CCTGAAACTATTATTGCAATGAAGCA 58.740 34.615 22.27 8.01 43.99 3.91
3108 3827 6.199719 GCCTGAAACTATTATTGCAATGAAGC 59.800 38.462 22.27 5.21 0.00 3.86
3117 3836 9.736023 GAATAACCAAGCCTGAAACTATTATTG 57.264 33.333 0.00 0.00 0.00 1.90
3120 3839 8.325787 TCAGAATAACCAAGCCTGAAACTATTA 58.674 33.333 0.00 0.00 31.72 0.98
3123 3842 6.121776 TCAGAATAACCAAGCCTGAAACTA 57.878 37.500 0.00 0.00 31.72 2.24
3124 3843 4.985538 TCAGAATAACCAAGCCTGAAACT 58.014 39.130 0.00 0.00 31.72 2.66
3129 3848 4.096984 GGACATTCAGAATAACCAAGCCTG 59.903 45.833 10.98 0.00 0.00 4.85
3256 4280 3.878086 TGCAAGTCTAGAACAAAAGCG 57.122 42.857 0.00 0.00 0.00 4.68
3310 4337 2.603473 TGTGGGACGGAGGGAGTG 60.603 66.667 0.00 0.00 0.00 3.51
3315 4342 2.662866 TCTTATACTGTGGGACGGAGG 58.337 52.381 0.00 0.00 0.00 4.30
3316 4343 6.591750 AATATCTTATACTGTGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
3317 4344 6.152323 GCTAATATCTTATACTGTGGGACGGA 59.848 42.308 0.00 0.00 0.00 4.69
3318 4345 6.153000 AGCTAATATCTTATACTGTGGGACGG 59.847 42.308 0.00 0.00 0.00 4.79
3319 4346 7.159322 AGCTAATATCTTATACTGTGGGACG 57.841 40.000 0.00 0.00 0.00 4.79
3320 4347 8.585881 TCAAGCTAATATCTTATACTGTGGGAC 58.414 37.037 0.00 0.00 0.00 4.46
3321 4348 8.721133 TCAAGCTAATATCTTATACTGTGGGA 57.279 34.615 0.00 0.00 0.00 4.37
3322 4349 9.778741 TTTCAAGCTAATATCTTATACTGTGGG 57.221 33.333 0.00 0.00 0.00 4.61
3345 4372 8.836413 TCCGTCCACAATATAAGATCATTTTTC 58.164 33.333 0.00 0.00 0.00 2.29
3346 4373 8.746052 TCCGTCCACAATATAAGATCATTTTT 57.254 30.769 0.00 0.00 0.00 1.94
3347 4374 7.445402 CCTCCGTCCACAATATAAGATCATTTT 59.555 37.037 0.00 0.00 0.00 1.82
3348 4375 6.936900 CCTCCGTCCACAATATAAGATCATTT 59.063 38.462 0.00 0.00 0.00 2.32
3349 4376 6.467677 CCTCCGTCCACAATATAAGATCATT 58.532 40.000 0.00 0.00 0.00 2.57
3350 4377 5.046304 CCCTCCGTCCACAATATAAGATCAT 60.046 44.000 0.00 0.00 0.00 2.45
3351 4378 4.283467 CCCTCCGTCCACAATATAAGATCA 59.717 45.833 0.00 0.00 0.00 2.92
3352 4379 4.527038 TCCCTCCGTCCACAATATAAGATC 59.473 45.833 0.00 0.00 0.00 2.75
3353 4380 4.489737 TCCCTCCGTCCACAATATAAGAT 58.510 43.478 0.00 0.00 0.00 2.40
3354 4381 3.895656 CTCCCTCCGTCCACAATATAAGA 59.104 47.826 0.00 0.00 0.00 2.10
3355 4382 3.641906 ACTCCCTCCGTCCACAATATAAG 59.358 47.826 0.00 0.00 0.00 1.73
3356 4383 3.649843 ACTCCCTCCGTCCACAATATAA 58.350 45.455 0.00 0.00 0.00 0.98
3357 4384 3.323774 ACTCCCTCCGTCCACAATATA 57.676 47.619 0.00 0.00 0.00 0.86
3358 4385 2.176247 ACTCCCTCCGTCCACAATAT 57.824 50.000 0.00 0.00 0.00 1.28
3359 4386 2.024655 ACTACTCCCTCCGTCCACAATA 60.025 50.000 0.00 0.00 0.00 1.90
3360 4387 1.273098 ACTACTCCCTCCGTCCACAAT 60.273 52.381 0.00 0.00 0.00 2.71
3361 4388 0.113776 ACTACTCCCTCCGTCCACAA 59.886 55.000 0.00 0.00 0.00 3.33
3362 4389 0.994247 TACTACTCCCTCCGTCCACA 59.006 55.000 0.00 0.00 0.00 4.17
3363 4390 2.361643 ATACTACTCCCTCCGTCCAC 57.638 55.000 0.00 0.00 0.00 4.02
3364 4391 3.393426 AAATACTACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
3419 4446 2.033299 GCTAGTTGTTCAGCAGTTGCAA 59.967 45.455 6.90 0.00 45.16 4.08
3439 4467 4.236935 CACTCCACAAATGTTGGTTATGC 58.763 43.478 0.00 0.00 34.12 3.14
3455 4483 5.594725 CCTCATAGTAGAAACTAGCACTCCA 59.405 44.000 0.00 0.00 41.46 3.86
3480 4508 6.875076 ACTTCTAACACATACACAGATACCC 58.125 40.000 0.00 0.00 0.00 3.69
3481 4509 7.544622 TGACTTCTAACACATACACAGATACC 58.455 38.462 0.00 0.00 0.00 2.73
3498 4526 6.640518 ACAAAGAGTGTGTTCTTGACTTCTA 58.359 36.000 0.00 0.00 39.72 2.10
3499 4527 5.491982 ACAAAGAGTGTGTTCTTGACTTCT 58.508 37.500 0.00 0.00 39.72 2.85
3501 4529 5.491982 AGACAAAGAGTGTGTTCTTGACTT 58.508 37.500 0.00 0.00 41.96 3.01
3502 4530 5.091261 AGACAAAGAGTGTGTTCTTGACT 57.909 39.130 0.00 0.00 41.96 3.41
3503 4531 5.050702 GCTAGACAAAGAGTGTGTTCTTGAC 60.051 44.000 0.00 0.00 41.96 3.18
3507 4535 4.946478 AGCTAGACAAAGAGTGTGTTCT 57.054 40.909 0.00 0.00 41.96 3.01
3508 4536 4.811557 ACAAGCTAGACAAAGAGTGTGTTC 59.188 41.667 0.00 0.00 41.96 3.18
3511 4539 5.053145 AGAACAAGCTAGACAAAGAGTGTG 58.947 41.667 0.00 0.00 41.96 3.82
3516 4545 6.183360 ACACCTAAGAACAAGCTAGACAAAGA 60.183 38.462 0.00 0.00 0.00 2.52
3519 4548 5.546621 ACACCTAAGAACAAGCTAGACAA 57.453 39.130 0.00 0.00 0.00 3.18
3525 4554 5.422331 TGCTATCTACACCTAAGAACAAGCT 59.578 40.000 0.00 0.00 32.67 3.74
3537 4566 1.287425 GTGGCGTTGCTATCTACACC 58.713 55.000 0.00 0.00 0.00 4.16
3539 4568 0.177141 GGGTGGCGTTGCTATCTACA 59.823 55.000 0.00 0.00 0.00 2.74
3553 4582 2.141122 AAATTCGTGCAAGCGGGTGG 62.141 55.000 0.00 0.00 0.00 4.61
3598 4627 6.440010 TCAGATGGCATTTTATCCCTCAAAAA 59.560 34.615 0.00 0.00 0.00 1.94
3599 4628 5.957168 TCAGATGGCATTTTATCCCTCAAAA 59.043 36.000 0.00 0.00 0.00 2.44
3600 4629 5.517924 TCAGATGGCATTTTATCCCTCAAA 58.482 37.500 0.00 0.00 0.00 2.69
3601 4630 5.128033 TCAGATGGCATTTTATCCCTCAA 57.872 39.130 0.00 0.00 0.00 3.02
3602 4631 4.794311 TCAGATGGCATTTTATCCCTCA 57.206 40.909 0.00 0.00 0.00 3.86
3603 4632 6.716628 TGTTATCAGATGGCATTTTATCCCTC 59.283 38.462 0.00 0.00 0.00 4.30
3604 4633 6.613699 TGTTATCAGATGGCATTTTATCCCT 58.386 36.000 0.00 0.00 0.00 4.20
3605 4634 6.716628 TCTGTTATCAGATGGCATTTTATCCC 59.283 38.462 0.00 0.00 44.58 3.85
3606 4635 7.750229 TCTGTTATCAGATGGCATTTTATCC 57.250 36.000 0.00 0.00 44.58 2.59
3628 4657 4.706842 ACAGATACGGGGCATTTTATCT 57.293 40.909 0.00 0.00 32.56 1.98
3630 4677 3.888930 CCAACAGATACGGGGCATTTTAT 59.111 43.478 0.00 0.00 0.00 1.40
3638 4685 1.553248 TGACTTCCAACAGATACGGGG 59.447 52.381 0.00 0.00 0.00 5.73
3641 4688 4.748892 AGTCATGACTTCCAACAGATACG 58.251 43.478 22.89 0.00 38.83 3.06
3651 4698 4.869297 CACAGAATGAGAGTCATGACTTCC 59.131 45.833 28.46 21.72 39.59 3.46
3652 4699 4.329528 GCACAGAATGAGAGTCATGACTTC 59.670 45.833 28.46 24.19 39.59 3.01
3653 4700 4.252073 GCACAGAATGAGAGTCATGACTT 58.748 43.478 28.46 18.00 39.59 3.01
3654 4701 3.260128 TGCACAGAATGAGAGTCATGACT 59.740 43.478 28.23 28.23 41.71 3.41
3685 4732 8.500773 TGACAGAAAATATAAACAAACGAGGAC 58.499 33.333 0.00 0.00 0.00 3.85
3726 4811 5.832060 ACATTCCAGATCATTTGATTCCCTC 59.168 40.000 0.00 0.00 34.37 4.30
3728 4813 6.475596 AACATTCCAGATCATTTGATTCCC 57.524 37.500 0.00 0.00 34.37 3.97
3745 4830 3.316868 TCACCGGACAAGGAAAAACATTC 59.683 43.478 9.46 0.00 34.73 2.67
3769 4854 3.729108 AGGGGATGAGACAAGAATCAGA 58.271 45.455 0.00 0.00 0.00 3.27
3777 4862 3.766545 CCTGAAAAAGGGGATGAGACAA 58.233 45.455 0.00 0.00 43.15 3.18
3792 4877 0.874390 GCGAGATTGCACACCTGAAA 59.126 50.000 0.00 0.00 34.15 2.69
3801 4886 2.754552 AGCTAAAAATGGCGAGATTGCA 59.245 40.909 0.00 0.00 36.28 4.08
3810 4895 2.809446 CCGCCTTAAGCTAAAAATGGC 58.191 47.619 0.00 0.00 40.39 4.40
3826 4911 4.864334 CACTCCTCCCATGCCGCC 62.864 72.222 0.00 0.00 0.00 6.13
3830 4915 0.463474 GAGCTTCACTCCTCCCATGC 60.463 60.000 0.00 0.00 39.75 4.06
3856 4941 6.214191 TCCTGCAACTAGACTGAATTAGAG 57.786 41.667 0.00 0.00 0.00 2.43
3878 4963 5.706833 ACTCCCAAAATTTCAATTGCCATTC 59.293 36.000 0.00 0.00 0.00 2.67
3886 4971 6.014327 ACATGTGCTACTCCCAAAATTTCAAT 60.014 34.615 0.00 0.00 0.00 2.57
3899 4984 8.029642 AGTAACAATTTACACATGTGCTACTC 57.970 34.615 25.68 6.30 40.25 2.59
3901 4986 7.241376 GGAGTAACAATTTACACATGTGCTAC 58.759 38.462 25.68 12.86 40.25 3.58
3905 4990 6.817765 AGGGAGTAACAATTTACACATGTG 57.182 37.500 24.25 24.25 40.25 3.21
3910 4995 6.347969 GGAACGAAGGGAGTAACAATTTACAC 60.348 42.308 0.00 0.00 40.25 2.90
3918 5003 3.842007 TTTGGAACGAAGGGAGTAACA 57.158 42.857 0.00 0.00 0.00 2.41
3921 5006 5.246656 TGAGTAATTTGGAACGAAGGGAGTA 59.753 40.000 0.00 0.00 0.00 2.59
3922 5007 4.041198 TGAGTAATTTGGAACGAAGGGAGT 59.959 41.667 0.00 0.00 0.00 3.85
3923 5008 4.575885 TGAGTAATTTGGAACGAAGGGAG 58.424 43.478 0.00 0.00 0.00 4.30
3924 5009 4.627284 TGAGTAATTTGGAACGAAGGGA 57.373 40.909 0.00 0.00 0.00 4.20
3925 5010 4.941263 TGATGAGTAATTTGGAACGAAGGG 59.059 41.667 0.00 0.00 0.00 3.95
3926 5011 6.458751 CCATGATGAGTAATTTGGAACGAAGG 60.459 42.308 0.00 0.00 0.00 3.46
3927 5012 6.094048 ACCATGATGAGTAATTTGGAACGAAG 59.906 38.462 0.00 0.00 0.00 3.79
3928 5013 5.943416 ACCATGATGAGTAATTTGGAACGAA 59.057 36.000 0.00 0.00 0.00 3.85
3929 5014 5.496556 ACCATGATGAGTAATTTGGAACGA 58.503 37.500 0.00 0.00 0.00 3.85
3930 5015 5.818136 ACCATGATGAGTAATTTGGAACG 57.182 39.130 0.00 0.00 0.00 3.95
3931 5016 9.573133 CTAAAACCATGATGAGTAATTTGGAAC 57.427 33.333 0.00 0.00 0.00 3.62
3932 5017 9.308000 ACTAAAACCATGATGAGTAATTTGGAA 57.692 29.630 0.00 0.00 0.00 3.53
3933 5018 8.877864 ACTAAAACCATGATGAGTAATTTGGA 57.122 30.769 0.00 0.00 0.00 3.53
3934 5019 9.573133 GAACTAAAACCATGATGAGTAATTTGG 57.427 33.333 0.00 0.00 0.00 3.28
3937 5022 8.450964 CGTGAACTAAAACCATGATGAGTAATT 58.549 33.333 0.00 0.00 0.00 1.40
3938 5023 7.822334 TCGTGAACTAAAACCATGATGAGTAAT 59.178 33.333 0.00 0.00 0.00 1.89
3939 5024 7.117236 GTCGTGAACTAAAACCATGATGAGTAA 59.883 37.037 0.00 0.00 0.00 2.24
3940 5025 6.588756 GTCGTGAACTAAAACCATGATGAGTA 59.411 38.462 0.00 0.00 0.00 2.59
3941 5026 5.408604 GTCGTGAACTAAAACCATGATGAGT 59.591 40.000 0.00 0.00 0.00 3.41
3942 5027 5.444613 CGTCGTGAACTAAAACCATGATGAG 60.445 44.000 0.00 0.00 35.79 2.90
3943 5028 4.387559 CGTCGTGAACTAAAACCATGATGA 59.612 41.667 0.00 0.00 35.79 2.92
3944 5029 4.387559 TCGTCGTGAACTAAAACCATGATG 59.612 41.667 0.00 0.00 35.34 3.07
3945 5030 4.562082 TCGTCGTGAACTAAAACCATGAT 58.438 39.130 0.00 0.00 0.00 2.45
3946 5031 3.979948 TCGTCGTGAACTAAAACCATGA 58.020 40.909 0.00 0.00 0.00 3.07
3947 5032 3.739300 ACTCGTCGTGAACTAAAACCATG 59.261 43.478 0.56 0.00 0.00 3.66
3948 5033 3.985925 GACTCGTCGTGAACTAAAACCAT 59.014 43.478 0.56 0.00 0.00 3.55
3949 5034 3.374745 GACTCGTCGTGAACTAAAACCA 58.625 45.455 0.56 0.00 0.00 3.67
3950 5035 2.728318 GGACTCGTCGTGAACTAAAACC 59.272 50.000 0.56 0.00 0.00 3.27
3951 5036 2.403037 CGGACTCGTCGTGAACTAAAAC 59.597 50.000 0.56 0.00 0.00 2.43
3952 5037 2.653890 CGGACTCGTCGTGAACTAAAA 58.346 47.619 0.56 0.00 0.00 1.52
3953 5038 2.320805 CGGACTCGTCGTGAACTAAA 57.679 50.000 0.56 0.00 0.00 1.85
3965 5050 2.597305 CGAGTAATTTGGAACGGACTCG 59.403 50.000 7.72 7.72 46.87 4.18
3966 5051 3.582780 ACGAGTAATTTGGAACGGACTC 58.417 45.455 0.00 0.00 0.00 3.36
3967 5052 3.006110 TGACGAGTAATTTGGAACGGACT 59.994 43.478 0.00 0.00 0.00 3.85
3968 5053 3.319755 TGACGAGTAATTTGGAACGGAC 58.680 45.455 0.00 0.00 0.00 4.79
3969 5054 3.663995 TGACGAGTAATTTGGAACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3970 5055 3.063452 CCATGACGAGTAATTTGGAACGG 59.937 47.826 0.00 0.00 0.00 4.44
3971 5056 3.682858 ACCATGACGAGTAATTTGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
3972 5057 5.622770 AACCATGACGAGTAATTTGGAAC 57.377 39.130 0.00 0.00 0.00 3.62
3973 5058 6.642707 AAAACCATGACGAGTAATTTGGAA 57.357 33.333 0.00 0.00 0.00 3.53
3974 5059 6.938030 ACTAAAACCATGACGAGTAATTTGGA 59.062 34.615 0.00 0.00 0.00 3.53
3975 5060 7.141100 ACTAAAACCATGACGAGTAATTTGG 57.859 36.000 0.00 0.00 0.00 3.28
3976 5061 8.286800 TGAACTAAAACCATGACGAGTAATTTG 58.713 33.333 0.00 0.00 0.00 2.32
3977 5062 8.287503 GTGAACTAAAACCATGACGAGTAATTT 58.712 33.333 0.00 0.00 0.00 1.82
3978 5063 7.359765 CGTGAACTAAAACCATGACGAGTAATT 60.360 37.037 0.00 0.00 0.00 1.40
3979 5064 6.090358 CGTGAACTAAAACCATGACGAGTAAT 59.910 38.462 0.00 0.00 0.00 1.89
3980 5065 5.403166 CGTGAACTAAAACCATGACGAGTAA 59.597 40.000 0.00 0.00 0.00 2.24
3981 5066 4.919168 CGTGAACTAAAACCATGACGAGTA 59.081 41.667 0.00 0.00 0.00 2.59
3982 5067 3.739300 CGTGAACTAAAACCATGACGAGT 59.261 43.478 0.00 0.00 0.00 4.18
3983 5068 3.985279 TCGTGAACTAAAACCATGACGAG 59.015 43.478 0.00 0.00 31.48 4.18
3984 5069 3.737266 GTCGTGAACTAAAACCATGACGA 59.263 43.478 0.00 0.00 37.18 4.20
3985 5070 4.048820 GTCGTGAACTAAAACCATGACG 57.951 45.455 0.00 0.00 37.18 4.35
3986 5071 3.737266 TCGTCGTGAACTAAAACCATGAC 59.263 43.478 0.00 0.00 41.14 3.06
3987 5072 3.979948 TCGTCGTGAACTAAAACCATGA 58.020 40.909 0.00 0.00 0.00 3.07
3988 5073 3.739300 ACTCGTCGTGAACTAAAACCATG 59.261 43.478 0.56 0.00 0.00 3.66
3989 5074 3.986277 ACTCGTCGTGAACTAAAACCAT 58.014 40.909 0.56 0.00 0.00 3.55
3990 5075 3.441496 ACTCGTCGTGAACTAAAACCA 57.559 42.857 0.56 0.00 0.00 3.67
3991 5076 6.457851 AATTACTCGTCGTGAACTAAAACC 57.542 37.500 0.56 0.00 0.00 3.27
3992 5077 6.788930 CCAAATTACTCGTCGTGAACTAAAAC 59.211 38.462 0.56 0.00 0.00 2.43
3993 5078 6.700960 TCCAAATTACTCGTCGTGAACTAAAA 59.299 34.615 0.56 0.00 0.00 1.52
3994 5079 6.215121 TCCAAATTACTCGTCGTGAACTAAA 58.785 36.000 0.56 0.00 0.00 1.85
3995 5080 5.771469 TCCAAATTACTCGTCGTGAACTAA 58.229 37.500 0.56 0.00 0.00 2.24
3996 5081 5.375417 TCCAAATTACTCGTCGTGAACTA 57.625 39.130 0.56 0.00 0.00 2.24
3997 5082 4.247267 TCCAAATTACTCGTCGTGAACT 57.753 40.909 0.56 0.00 0.00 3.01
3998 5083 4.662394 CGTTCCAAATTACTCGTCGTGAAC 60.662 45.833 0.56 0.00 0.00 3.18
3999 5084 3.426191 CGTTCCAAATTACTCGTCGTGAA 59.574 43.478 0.56 0.00 0.00 3.18
4000 5085 2.981805 CGTTCCAAATTACTCGTCGTGA 59.018 45.455 0.56 0.00 0.00 4.35
4001 5086 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
4002 5087 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4003 5088 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4004 5089 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4005 5090 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4006 5091 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4007 5092 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4008 5093 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4009 5094 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4010 5095 8.674925 ATATATACTCCCTCCGTTCCAAATTA 57.325 34.615 0.00 0.00 0.00 1.40
4011 5096 5.906772 ATATACTCCCTCCGTTCCAAATT 57.093 39.130 0.00 0.00 0.00 1.82
4012 5097 6.960542 AGATATATACTCCCTCCGTTCCAAAT 59.039 38.462 0.00 0.00 0.00 2.32
4013 5098 6.320518 AGATATATACTCCCTCCGTTCCAAA 58.679 40.000 0.00 0.00 0.00 3.28
4014 5099 5.900437 AGATATATACTCCCTCCGTTCCAA 58.100 41.667 0.00 0.00 0.00 3.53
4015 5100 5.531753 AGATATATACTCCCTCCGTTCCA 57.468 43.478 0.00 0.00 0.00 3.53
4016 5101 5.532032 GCTAGATATATACTCCCTCCGTTCC 59.468 48.000 0.00 0.00 0.00 3.62
4017 5102 5.236911 CGCTAGATATATACTCCCTCCGTTC 59.763 48.000 0.00 0.00 0.00 3.95
4018 5103 5.124645 CGCTAGATATATACTCCCTCCGTT 58.875 45.833 0.00 0.00 0.00 4.44
4019 5104 4.163839 ACGCTAGATATATACTCCCTCCGT 59.836 45.833 0.00 0.00 0.00 4.69
4020 5105 4.706035 ACGCTAGATATATACTCCCTCCG 58.294 47.826 0.00 0.00 0.00 4.63
4021 5106 5.065235 GGACGCTAGATATATACTCCCTCC 58.935 50.000 0.00 0.00 0.00 4.30
4022 5107 5.682659 TGGACGCTAGATATATACTCCCTC 58.317 45.833 0.00 0.00 0.00 4.30
4023 5108 5.712084 TGGACGCTAGATATATACTCCCT 57.288 43.478 0.00 0.00 0.00 4.20
4024 5109 6.300703 AGATGGACGCTAGATATATACTCCC 58.699 44.000 0.00 0.00 0.00 4.30
4025 5110 7.811117 AAGATGGACGCTAGATATATACTCC 57.189 40.000 0.00 0.00 0.00 3.85
4027 5112 9.908747 ACTTAAGATGGACGCTAGATATATACT 57.091 33.333 10.09 0.00 0.00 2.12
4028 5113 9.938670 CACTTAAGATGGACGCTAGATATATAC 57.061 37.037 10.09 0.00 0.00 1.47
4045 5130 9.608718 AGGATAGCCTATTAGAACACTTAAGAT 57.391 33.333 10.09 0.00 44.74 2.40
4049 5134 8.548880 AACAGGATAGCCTATTAGAACACTTA 57.451 34.615 0.00 0.00 44.80 2.24
4063 5148 4.123506 GCTTCTCAGTTAACAGGATAGCC 58.876 47.826 8.61 0.00 0.00 3.93
4067 5152 4.566488 CCAAGGCTTCTCAGTTAACAGGAT 60.566 45.833 8.61 0.00 0.00 3.24
4069 5154 3.077359 CCAAGGCTTCTCAGTTAACAGG 58.923 50.000 8.61 0.00 0.00 4.00
4070 5155 2.485814 GCCAAGGCTTCTCAGTTAACAG 59.514 50.000 8.61 0.00 38.26 3.16
4073 5158 2.949177 TGCCAAGGCTTCTCAGTTAA 57.051 45.000 12.96 0.00 42.51 2.01
4075 5160 2.165998 GAATGCCAAGGCTTCTCAGTT 58.834 47.619 12.96 0.00 42.51 3.16
4077 5162 1.101331 GGAATGCCAAGGCTTCTCAG 58.899 55.000 12.96 0.00 42.51 3.35
4078 5163 0.700564 AGGAATGCCAAGGCTTCTCA 59.299 50.000 12.96 0.00 42.51 3.27
4080 5165 2.174360 GAAAGGAATGCCAAGGCTTCT 58.826 47.619 12.96 1.92 42.51 2.85
4081 5166 1.205655 GGAAAGGAATGCCAAGGCTTC 59.794 52.381 12.96 12.44 42.51 3.86
4082 5167 1.203225 AGGAAAGGAATGCCAAGGCTT 60.203 47.619 12.96 2.83 42.51 4.35
4115 5241 0.617820 AGGCCGTACCATCTTCCACT 60.618 55.000 0.00 0.00 43.14 4.00
4134 5309 2.006415 CCCATTACCCAGGGCCTCA 61.006 63.158 0.95 0.00 38.44 3.86
4135 5310 2.927056 CCCATTACCCAGGGCCTC 59.073 66.667 0.95 0.00 38.44 4.70
4140 5315 0.684153 CAGGTTGCCCATTACCCAGG 60.684 60.000 0.00 0.00 34.90 4.45
4141 5316 0.039618 ACAGGTTGCCCATTACCCAG 59.960 55.000 0.00 0.00 34.90 4.45
4142 5317 0.039035 GACAGGTTGCCCATTACCCA 59.961 55.000 0.00 0.00 34.90 4.51
4180 5355 5.890419 GGGAATCAAAGACTCAGAATGGATT 59.110 40.000 0.00 0.00 36.16 3.01
4182 5357 4.537688 AGGGAATCAAAGACTCAGAATGGA 59.462 41.667 0.00 0.00 36.16 3.41
4184 5359 5.494724 TCAGGGAATCAAAGACTCAGAATG 58.505 41.667 0.00 0.00 37.54 2.67
4186 5361 4.564406 GCTCAGGGAATCAAAGACTCAGAA 60.564 45.833 0.00 0.00 0.00 3.02
4192 5367 4.037923 TGTTTTGCTCAGGGAATCAAAGAC 59.962 41.667 0.00 0.00 31.20 3.01
4193 5368 4.214310 TGTTTTGCTCAGGGAATCAAAGA 58.786 39.130 0.00 0.00 31.20 2.52
4195 5370 4.161189 TGTTGTTTTGCTCAGGGAATCAAA 59.839 37.500 0.00 0.00 0.00 2.69
4196 5371 3.703556 TGTTGTTTTGCTCAGGGAATCAA 59.296 39.130 0.00 0.00 0.00 2.57
4197 5372 3.295093 TGTTGTTTTGCTCAGGGAATCA 58.705 40.909 0.00 0.00 0.00 2.57
4199 5374 2.036346 GCTGTTGTTTTGCTCAGGGAAT 59.964 45.455 0.00 0.00 0.00 3.01
4225 5865 3.181526 GCGTCTGATGAGCTACAGTTTTG 60.182 47.826 12.55 5.31 35.84 2.44
4236 5876 1.195347 CTTGCTACGCGTCTGATGAG 58.805 55.000 18.63 7.72 0.00 2.90
4246 5886 4.434520 AGAGAGTAATTTCCTTGCTACGC 58.565 43.478 0.00 0.00 28.95 4.42
4256 5926 8.207545 AGAGAGAGAGAGAGAGAGAGTAATTTC 58.792 40.741 0.00 0.00 0.00 2.17
4271 5941 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4275 5945 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4276 5946 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4277 5947 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4278 5948 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4279 5949 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
4281 5951 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
4283 5953 4.760530 TTGGAGAGAGAGAGAGAGAGAG 57.239 50.000 0.00 0.00 0.00 3.20
4328 5998 2.698855 AATTAGCTCACGCCACTGAT 57.301 45.000 0.00 0.00 36.60 2.90
4330 6000 3.198068 ACATAATTAGCTCACGCCACTG 58.802 45.455 0.00 0.00 36.60 3.66
4331 6001 3.543680 ACATAATTAGCTCACGCCACT 57.456 42.857 0.00 0.00 36.60 4.00
4334 6024 5.986004 AAGTAACATAATTAGCTCACGCC 57.014 39.130 0.00 0.00 36.60 5.68
4337 6027 7.898309 CGTGACAAAGTAACATAATTAGCTCAC 59.102 37.037 0.00 0.00 0.00 3.51
4353 6047 5.804692 TGTGTGTATTTTCGTGACAAAGT 57.195 34.783 0.00 0.00 0.00 2.66
4362 6056 5.872617 TCTAGTGGGATTGTGTGTATTTTCG 59.127 40.000 0.00 0.00 0.00 3.46
4369 6063 5.755409 TGTTATCTAGTGGGATTGTGTGT 57.245 39.130 0.00 0.00 0.00 3.72
4378 6072 5.741011 TGTAAGGCTTTGTTATCTAGTGGG 58.259 41.667 4.45 0.00 0.00 4.61
4399 6096 6.993079 TGTGGTCATCGAGCTTATATATTGT 58.007 36.000 0.00 0.00 0.00 2.71
4419 6116 9.698309 ACTCAAAATATATCGACTAATCTGTGG 57.302 33.333 0.00 0.00 0.00 4.17
4429 6126 8.879759 TGAGGTTGAAACTCAAAATATATCGAC 58.120 33.333 11.05 0.00 41.66 4.20
4441 6154 4.331968 ACACAGTTTGAGGTTGAAACTCA 58.668 39.130 9.20 9.20 40.83 3.41
4466 6179 3.366273 CGTTTGTATGGATGCAGCAAGTT 60.366 43.478 3.51 0.00 0.00 2.66
4468 6181 2.419673 TCGTTTGTATGGATGCAGCAAG 59.580 45.455 3.51 0.00 0.00 4.01
4469 6182 2.419673 CTCGTTTGTATGGATGCAGCAA 59.580 45.455 3.51 0.00 0.00 3.91
4471 6184 1.268234 GCTCGTTTGTATGGATGCAGC 60.268 52.381 0.00 0.00 0.00 5.25
4472 6185 2.031314 CAGCTCGTTTGTATGGATGCAG 59.969 50.000 0.00 0.00 0.00 4.41
4473 6186 2.009051 CAGCTCGTTTGTATGGATGCA 58.991 47.619 0.00 0.00 0.00 3.96
4474 6187 1.331756 CCAGCTCGTTTGTATGGATGC 59.668 52.381 0.00 0.00 32.55 3.91
4475 6188 2.352651 CACCAGCTCGTTTGTATGGATG 59.647 50.000 0.00 0.00 34.99 3.51
4477 6190 1.621317 TCACCAGCTCGTTTGTATGGA 59.379 47.619 0.00 0.00 34.99 3.41
4488 6203 0.723981 GTCTGCGAATTCACCAGCTC 59.276 55.000 14.97 9.02 0.00 4.09
4490 6205 0.874390 TTGTCTGCGAATTCACCAGC 59.126 50.000 14.97 7.06 0.00 4.85
4502 6217 5.252969 TCATGGCATATTTCTTTGTCTGC 57.747 39.130 0.00 0.00 0.00 4.26
4505 6220 5.174398 CGCATTCATGGCATATTTCTTTGTC 59.826 40.000 0.00 0.00 0.00 3.18
4510 6227 2.624364 TGCGCATTCATGGCATATTTCT 59.376 40.909 5.66 0.00 31.96 2.52
4511 6228 2.727798 GTGCGCATTCATGGCATATTTC 59.272 45.455 15.91 0.00 36.73 2.17
4514 6231 1.320507 TGTGCGCATTCATGGCATAT 58.679 45.000 15.91 0.00 36.73 1.78
4536 6253 1.595382 GTGCTTCCTCTGTGCACGT 60.595 57.895 13.13 0.00 45.62 4.49
4537 6254 3.248029 GTGCTTCCTCTGTGCACG 58.752 61.111 13.13 7.36 45.62 5.34
4550 6267 2.099098 CGTTTCCTTTTCAACTGGTGCT 59.901 45.455 0.00 0.00 0.00 4.40
4566 6286 4.079710 GCGTTGTTTATGCTCTACGTTTC 58.920 43.478 0.00 0.00 35.87 2.78
4579 6299 7.028926 TCCTTTCAGTTAATTGCGTTGTTTA 57.971 32.000 0.00 0.00 0.00 2.01
4583 6303 7.967854 TCATTATCCTTTCAGTTAATTGCGTTG 59.032 33.333 0.00 0.00 0.00 4.10
4679 6400 5.532779 AGTCCATTTCCAGTTCTCTTTTGTC 59.467 40.000 0.00 0.00 0.00 3.18
4798 6522 4.590850 AAAAGGAGTGAATTTCTGTGGC 57.409 40.909 0.00 0.00 0.00 5.01
4892 6617 3.066203 TGTGCTCTTTGATATCGCGTCTA 59.934 43.478 5.77 0.00 0.00 2.59
4893 6618 2.159240 TGTGCTCTTTGATATCGCGTCT 60.159 45.455 5.77 0.00 0.00 4.18
4899 6624 6.985188 TGGTTACTTGTGCTCTTTGATATC 57.015 37.500 0.00 0.00 0.00 1.63
4995 6720 1.201647 CGTTACGATGTGGTCACCTCT 59.798 52.381 0.00 0.00 0.00 3.69
5188 6913 4.163458 TGTTCACAGCTGTAATGCAATG 57.837 40.909 21.20 4.56 34.99 2.82
5199 6924 4.903054 TGAATCTTGAGATGTTCACAGCT 58.097 39.130 0.00 0.00 46.40 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.