AutoCloner

Multiple sequence alignment - TraesCS2B01G161600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G161600	chr2B	100.000	3337	0	0	1	3337	134602813	134599477	0.000000e+00	6163
1	TraesCS2B01G161600	chr2B	80.084	1667	294	24	93	1727	134512802	134511142	0.000000e+00	1205
2	TraesCS2B01G161600	chr2B	78.559	1763	324	35	3	1726	134550335	134548588	0.000000e+00	1112
3	TraesCS2B01G161600	chr2B	88.773	481	49	4	1864	2341	134510978	134510500	4.800000e-163	584
4	TraesCS2B01G161600	chr2D	97.100	1862	50	4	3	1861	82893730	82891870	0.000000e+00	3136
5	TraesCS2B01G161600	chr2D	79.717	2470	405	62	1	2410	82874431	82871998	0.000000e+00	1698
6	TraesCS2B01G161600	chr2D	79.267	2455	418	49	3	2396	82656023	82653599	0.000000e+00	1629
7	TraesCS2B01G161600	chr2D	79.651	1661	287	31	103	1726	82647594	82645948	0.000000e+00	1147
8	TraesCS2B01G161600	chr2D	77.638	1744	332	36	1	1705	82836797	82835073	0.000000e+00	1007
9	TraesCS2B01G161600	chr2D	96.735	582	19	0	1858	2439	82891839	82891258	0.000000e+00	970
10	TraesCS2B01G161600	chr2D	77.282	1523	297	33	197	1685	82335424	82333917	0.000000e+00	850
11	TraesCS2B01G161600	chr2D	89.463	484	51	0	1873	2356	82834940	82834457	2.200000e-171	612
12	TraesCS2B01G161600	chr2D	87.572	346	25	6	2996	3337	82890901	82890570	5.220000e-103	385
13	TraesCS2B01G161600	chr2D	86.119	353	26	9	2478	2815	82891283	82890939	3.170000e-95	359
14	TraesCS2B01G161600	chr2D	85.755	351	28	13	2996	3337	82869917	82869580	5.300000e-93	351
15	TraesCS2B01G161600	chr2D	78.100	621	80	33	2441	3014	82653589	82652978	3.190000e-90	342
16	TraesCS2B01G161600	chr2D	87.582	306	25	6	2996	3293	82832557	82832257	3.190000e-90	342
17	TraesCS2B01G161600	chr2D	80.627	351	53	12	2645	2991	82871695	82871356	1.190000e-64	257
18	TraesCS2B01G161600	chr2D	87.059	170	16	4	3118	3285	82652683	82652518	1.580000e-43	187
19	TraesCS2B01G161600	chr2A	79.748	2464	401	53	1	2396	83587146	83584713	0.000000e+00	1696
20	TraesCS2B01G161600	chr2A	80.732	1666	285	23	93	1727	83202459	83200799	0.000000e+00	1266
21	TraesCS2B01G161600	chr2A	80.346	1674	286	22	89	1726	83641847	83640181	0.000000e+00	1229
22	TraesCS2B01G161600	chr2A	80.346	1674	281	28	218	1862	83421907	83420253	0.000000e+00	1225
23	TraesCS2B01G161600	chr2A	89.675	862	68	12	2439	3293	83639482	83638635	0.000000e+00	1079
24	TraesCS2B01G161600	chr2A	77.034	1524	300	36	197	1685	83017099	83015591	0.000000e+00	830
25	TraesCS2B01G161600	chr2A	88.971	544	56	3	1873	2412	83640023	83639480	0.000000e+00	669
26	TraesCS2B01G161600	chr2A	87.835	485	57	2	1873	2356	83200624	83200141	4.830000e-158	568
27	TraesCS2B01G161600	chr2A	86.381	514	65	3	1875	2388	83440036	83439528	1.050000e-154	556
28	TraesCS2B01G161600	chr2A	75.847	1122	228	27	197	1293	83469250	83468147	6.340000e-147	531
29	TraesCS2B01G161600	chr2A	77.683	941	108	59	2439	3321	83584705	83583809	6.480000e-132	481

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G161600	chr2B	134599477	134602813	3336	True	6163.000000	6163	100.000000	1	3337	1	chr2B.!!$R2	3336
1	TraesCS2B01G161600	chr2B	134548588	134550335	1747	True	1112.000000	1112	78.559000	3	1726	1	chr2B.!!$R1	1723
2	TraesCS2B01G161600	chr2B	134510500	134512802	2302	True	894.500000	1205	84.428500	93	2341	2	chr2B.!!$R3	2248
3	TraesCS2B01G161600	chr2D	82890570	82893730	3160	True	1212.500000	3136	91.881500	3	3337	4	chr2D.!!$R6	3334
4	TraesCS2B01G161600	chr2D	82645948	82647594	1646	True	1147.000000	1147	79.651000	103	1726	1	chr2D.!!$R2	1623
5	TraesCS2B01G161600	chr2D	82333917	82335424	1507	True	850.000000	850	77.282000	197	1685	1	chr2D.!!$R1	1488
6	TraesCS2B01G161600	chr2D	82869580	82874431	4851	True	768.666667	1698	82.033000	1	3337	3	chr2D.!!$R5	3336
7	TraesCS2B01G161600	chr2D	82652518	82656023	3505	True	719.333333	1629	81.475333	3	3285	3	chr2D.!!$R3	3282
8	TraesCS2B01G161600	chr2D	82832257	82836797	4540	True	653.666667	1007	84.894333	1	3293	3	chr2D.!!$R4	3292
9	TraesCS2B01G161600	chr2A	83420253	83421907	1654	True	1225.000000	1225	80.346000	218	1862	1	chr2A.!!$R2	1644
10	TraesCS2B01G161600	chr2A	83583809	83587146	3337	True	1088.500000	1696	78.715500	1	3321	2	chr2A.!!$R6	3320
11	TraesCS2B01G161600	chr2A	83638635	83641847	3212	True	992.333333	1229	86.330667	89	3293	3	chr2A.!!$R7	3204
12	TraesCS2B01G161600	chr2A	83200141	83202459	2318	True	917.000000	1266	84.283500	93	2356	2	chr2A.!!$R5	2263
13	TraesCS2B01G161600	chr2A	83015591	83017099	1508	True	830.000000	830	77.034000	197	1685	1	chr2A.!!$R1	1488
14	TraesCS2B01G161600	chr2A	83439528	83440036	508	True	556.000000	556	86.381000	1875	2388	1	chr2A.!!$R3	513
15	TraesCS2B01G161600	chr2A	83468147	83469250	1103	True	531.000000	531	75.847000	197	1293	1	chr2A.!!$R4	1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
352	366	1.224592	CCGCCAGGCTGGATTTAGT	59.775	57.895	37.07	40.96	2.24	F
706	720	1.550524	CGAATTGTCTCTGTCCCTGGA	59.449	52.381	0.00	0.00	3.86	F
1038	1074	2.283884	GCTTGCTAGCTTTGATCTCGAC	59.716	50.000	17.23	44.27	4.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2053	2151	0.461961	AAGTGCATCGACTAGCCTCC	59.538	55.0	0.00	0.00	4.30	R
2086	2184	0.678048	GGGACAATGAGCAGTGGGTC	60.678	60.0	2.89	41.89	4.46	R
2980	4519	0.179048	AATGGCCGATTGCGATCAGA	60.179	50.0	14.39	37.43	3.27	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	6.757237	TGTTAATGTTCACTTTTCATGGCAT	58.243	32.000	0.00	0.00	0.00	4.40
86	87	3.066621	TCGCTAAATTCACCATTGCCATC	59.933	43.478	0.00	0.00	0.00	3.51
150	151	3.054875	TCAGATTCCAGCAGCAGTATTGT	60.055	43.478	0.00	0.00	0.00	2.71
161	162	1.267732	GCAGTATTGTGCATCGTGCTC	60.268	52.381	10.54	7.93	45.31	4.26
286	300	5.248477	TGGCCAAGGAATACTCTATACCATC	59.752	44.000	0.61	0.00	0.00	3.51
352	366	1.224592	CCGCCAGGCTGGATTTAGT	59.775	57.895	37.07	0.00	40.96	2.24
523	537	2.557924	TGGGCTTAAGATGTTGCACAAG	59.442	45.455	6.67	0.00	35.78	3.16
567	581	7.291411	TCAGGACTAAAGCTATATCAGAACC	57.709	40.000	0.00	0.00	0.00	3.62
583	597	1.553704	GAACCTACCACCTCCACGAAT	59.446	52.381	0.00	0.00	0.00	3.34
607	621	2.889170	TGGCCTGCTTGGTTAACATA	57.111	45.000	3.32	0.00	38.35	2.29
608	622	2.442413	TGGCCTGCTTGGTTAACATAC	58.558	47.619	3.32	0.00	38.35	2.39
706	720	1.550524	CGAATTGTCTCTGTCCCTGGA	59.449	52.381	0.00	0.00	0.00	3.86
960	996	3.761218	TGGAAACAGTCTGTTGCAAAGAA	59.239	39.130	22.72	2.87	40.14	2.52
1038	1074	2.283884	GCTTGCTAGCTTTGATCTCGAC	59.716	50.000	17.23	0.00	44.27	4.20
1119	1155	5.126067	AGCAATAGACCCAACATGACATAC	58.874	41.667	0.00	0.00	0.00	2.39
1341	1377	3.512724	AGAACATTGCCATGGAGGAAAAG	59.487	43.478	18.40	3.38	38.84	2.27
1671	1713	5.977821	TCTCCTACATTCTGAGAGAGGTA	57.022	43.478	0.00	0.00	31.75	3.08
1729	1778	5.834204	AGAGGCGGATATTGTAACTTACTCT	59.166	40.000	0.71	0.00	0.00	3.24
1813	1869	9.764363	CTACTCAAGTAAATAGATGGCAATACA	57.236	33.333	0.00	0.00	0.00	2.29
2004	2102	6.606796	ACAAATATGTAATGTCATTCCTGGCA	59.393	34.615	0.07	0.00	38.69	4.92
2053	2151	9.618890	TGGTCAGATCAAGGAAAGATTTATAAG	57.381	33.333	0.00	0.00	0.00	1.73
2060	2158	8.331931	TCAAGGAAAGATTTATAAGGAGGCTA	57.668	34.615	0.00	0.00	0.00	3.93
2108	2206	1.746615	CACTGCTCATTGTCCCGGG	60.747	63.158	16.85	16.85	0.00	5.73
2118	2216	0.546747	TTGTCCCGGGATCAGAAGGT	60.547	55.000	29.73	0.00	0.00	3.50
2426	2566	7.973048	ACTATATTCTCAGTTACACCAAGGA	57.027	36.000	0.00	0.00	0.00	3.36
2427	2567	8.012957	ACTATATTCTCAGTTACACCAAGGAG	57.987	38.462	0.00	0.00	0.00	3.69
2428	2568	7.839705	ACTATATTCTCAGTTACACCAAGGAGA	59.160	37.037	0.00	0.00	0.00	3.71
2429	2569	7.682787	ATATTCTCAGTTACACCAAGGAGAT	57.317	36.000	0.00	0.00	31.36	2.75
2430	2570	5.407407	TTCTCAGTTACACCAAGGAGATC	57.593	43.478	0.00	0.00	31.36	2.75
2431	2571	3.769844	TCTCAGTTACACCAAGGAGATCC	59.230	47.826	0.00	0.00	0.00	3.36
2432	2572	2.838202	TCAGTTACACCAAGGAGATCCC	59.162	50.000	0.00	0.00	36.42	3.85
2433	2573	2.571653	CAGTTACACCAAGGAGATCCCA	59.428	50.000	0.00	0.00	37.41	4.37
2434	2574	3.200825	CAGTTACACCAAGGAGATCCCAT	59.799	47.826	0.00	0.00	37.41	4.00
2435	2575	3.200825	AGTTACACCAAGGAGATCCCATG	59.799	47.826	0.00	1.70	37.41	3.66
2436	2576	1.971149	ACACCAAGGAGATCCCATGA	58.029	50.000	0.00	0.00	37.41	3.07
2437	2577	2.278245	ACACCAAGGAGATCCCATGAA	58.722	47.619	0.00	0.00	37.41	2.57
2438	2578	2.649312	ACACCAAGGAGATCCCATGAAA	59.351	45.455	0.00	0.00	37.41	2.69
2439	2579	3.019564	CACCAAGGAGATCCCATGAAAC	58.980	50.000	0.00	0.00	37.41	2.78
2454	2594	3.764237	TGAAACTGGGACTTGTAGACC	57.236	47.619	0.00	0.00	0.00	3.85
2469	2609	1.620822	AGACCCAATTTGCTCACCAC	58.379	50.000	0.00	0.00	0.00	4.16
2580	3974	9.134055	TCATGATGATGGCAACTTAAATAATGA	57.866	29.630	0.00	0.00	37.61	2.57
2679	4171	3.056821	TGTCAGGGTATGAGTCTTCAACG	60.057	47.826	0.00	0.00	39.07	4.10
2685	4177	2.254546	ATGAGTCTTCAACGCCAACA	57.745	45.000	0.00	0.00	36.78	3.33
2728	4236	3.205338	ACTTACACCGGGTGTTGTTTAC	58.795	45.455	35.37	0.00	45.08	2.01
2743	4251	6.016943	GTGTTGTTTACCACTACTAAATGGCA	60.017	38.462	0.00	0.00	39.84	4.92
2761	4276	2.418746	GGCACGGTCATTGAGTACTCAT	60.419	50.000	25.68	13.18	39.64	2.90
2839	4373	1.645034	CCAACTAGATGGCACTGACG	58.355	55.000	6.05	0.00	32.78	4.35
2858	4392	0.447801	GCCGACAAAGAACGATGCAT	59.552	50.000	0.00	0.00	0.00	3.96
2864	4398	4.319115	CGACAAAGAACGATGCATTTTGAG	59.681	41.667	21.72	13.57	33.98	3.02
2886	4420	0.271927	TGGATGGAGGGGAGCCTTAT	59.728	55.000	0.00	0.00	0.00	1.73
2901	4436	7.890655	GGGGAGCCTTATCACAATCTATTTTAT	59.109	37.037	0.00	0.00	0.00	1.40
2935	4473	2.787473	AGCAGTGCTAGCATGGTAAA	57.213	45.000	22.51	0.00	36.99	2.01
2936	4474	3.071874	AGCAGTGCTAGCATGGTAAAA	57.928	42.857	22.51	0.00	36.99	1.52
2980	4519	7.395489	ACCACAAATATTGAAATCTCTGCTTCT	59.605	33.333	0.00	0.00	0.00	2.85
3015	6004	3.689649	GGCCATTAACTGAACACTACAGG	59.310	47.826	0.00	0.00	39.38	4.00
3017	6006	3.689649	CCATTAACTGAACACTACAGGGC	59.310	47.826	0.00	0.00	39.38	5.19
3062	6278	4.499399	CGAACTGAACCGATGTATGTGTAG	59.501	45.833	0.00	0.00	0.00	2.74
3211	6450	3.423154	CAAAGCTGGGACGCGACC	61.423	66.667	19.61	19.61	33.54	4.79
3331	6572	0.898326	TGAAGCACCTAGAGCCGTGA	60.898	55.000	0.00	0.00	31.36	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	2.441410	TGGCAATGGTGAATTTAGCGA	58.559	42.857	0.00	0.00	0.00	4.93
86	87	8.535335	ACTATCACTAGGGCAAATATGTCTATG	58.465	37.037	0.00	0.00	0.00	2.23
286	300	1.299541	AAATCTCAAGTATGCCGGCG	58.700	50.000	23.90	6.13	0.00	6.46
523	537	5.414144	CCTGAAGATCTCCTTTTTCAGAACC	59.586	44.000	17.63	0.00	45.82	3.62
567	581	3.880047	TTGTATTCGTGGAGGTGGTAG	57.120	47.619	0.00	0.00	0.00	3.18
583	597	2.823154	GTTAACCAAGCAGGCCATTGTA	59.177	45.455	5.01	0.00	43.14	2.41
607	621	0.550914	TTTCACTTGTCCAGCCCAGT	59.449	50.000	0.00	0.00	0.00	4.00
608	622	1.242076	CTTTCACTTGTCCAGCCCAG	58.758	55.000	0.00	0.00	0.00	4.45
706	720	1.814634	GAGCCTATGAGCTGCATTGCT	60.815	52.381	10.49	15.77	45.15	3.91
947	967	2.346766	TGGCTCTTCTTTGCAACAGA	57.653	45.000	0.00	2.80	0.00	3.41
951	971	2.183478	TCGATGGCTCTTCTTTGCAA	57.817	45.000	0.00	0.00	0.00	4.08
952	972	2.183478	TTCGATGGCTCTTCTTTGCA	57.817	45.000	0.00	0.00	0.00	4.08
954	974	4.633126	TGATCTTTCGATGGCTCTTCTTTG	59.367	41.667	0.00	0.00	0.00	2.77
957	993	4.161189	TCTTGATCTTTCGATGGCTCTTCT	59.839	41.667	0.00	0.00	0.00	2.85
960	996	4.344679	AGATCTTGATCTTTCGATGGCTCT	59.655	41.667	7.27	0.00	0.00	4.09
1038	1074	7.041508	GGGTCTCTGCAGATTTCTATACAATTG	60.042	40.741	18.63	3.24	0.00	2.32
1087	1123	4.471904	TGGGTCTATTGCTAGTGAACTG	57.528	45.455	0.00	0.00	0.00	3.16
1095	1131	4.835284	TGTCATGTTGGGTCTATTGCTA	57.165	40.909	0.00	0.00	0.00	3.49
1119	1155	5.176406	CAGTGTCTTGTGTGTCTCATTACTG	59.824	44.000	0.00	0.00	0.00	2.74
1341	1377	3.637229	TGTGTCCGATCTCCTCCTTTATC	59.363	47.826	0.00	0.00	0.00	1.75
1729	1778	3.058293	GCATGCGCAAATATAACTGCCTA	60.058	43.478	17.11	0.00	38.36	3.93
1813	1869	7.394359	ACAACAGTATAGAAGTGGCAATTGATT	59.606	33.333	10.34	0.00	32.29	2.57
1821	1877	5.475719	TGTGTACAACAGTATAGAAGTGGC	58.524	41.667	0.00	0.00	33.78	5.01
2004	2102	4.065088	TGCTCTAGTTCTCGTGCAAAATT	58.935	39.130	0.00	0.00	0.00	1.82
2053	2151	0.461961	AAGTGCATCGACTAGCCTCC	59.538	55.000	0.00	0.00	0.00	4.30
2060	2158	7.041721	TCATATTTGAGTTAAGTGCATCGACT	58.958	34.615	0.00	0.00	0.00	4.18
2086	2184	0.678048	GGGACAATGAGCAGTGGGTC	60.678	60.000	2.89	0.00	41.89	4.46
2108	2206	5.651530	TGTTCAACTATCGACCTTCTGATC	58.348	41.667	0.00	0.00	0.00	2.92
2118	2216	6.754193	TGCATATGGTATGTTCAACTATCGA	58.246	36.000	4.56	0.00	0.00	3.59
2416	2556	3.129262	TCATGGGATCTCCTTGGTGTA	57.871	47.619	12.91	0.00	40.13	2.90
2417	2557	1.971149	TCATGGGATCTCCTTGGTGT	58.029	50.000	12.91	0.00	40.13	4.16
2418	2558	3.019564	GTTTCATGGGATCTCCTTGGTG	58.980	50.000	12.91	4.10	40.13	4.17
2419	2559	2.922283	AGTTTCATGGGATCTCCTTGGT	59.078	45.455	12.91	0.00	40.13	3.67
2420	2560	3.285484	CAGTTTCATGGGATCTCCTTGG	58.715	50.000	12.91	0.00	40.13	3.61
2421	2561	3.285484	CCAGTTTCATGGGATCTCCTTG	58.715	50.000	0.00	8.81	40.82	3.61
2422	2562	3.659183	CCAGTTTCATGGGATCTCCTT	57.341	47.619	0.00	0.00	36.64	3.36
2431	2571	4.003648	GTCTACAAGTCCCAGTTTCATGG	58.996	47.826	0.00	0.00	40.29	3.66
2432	2572	4.003648	GGTCTACAAGTCCCAGTTTCATG	58.996	47.826	0.00	0.00	0.00	3.07
2433	2573	3.009143	GGGTCTACAAGTCCCAGTTTCAT	59.991	47.826	4.59	0.00	42.25	2.57
2434	2574	2.370849	GGGTCTACAAGTCCCAGTTTCA	59.629	50.000	4.59	0.00	42.25	2.69
2435	2575	2.370849	TGGGTCTACAAGTCCCAGTTTC	59.629	50.000	7.71	0.00	46.31	2.78
2436	2576	2.414612	TGGGTCTACAAGTCCCAGTTT	58.585	47.619	7.71	0.00	46.31	2.66
2437	2577	2.112279	TGGGTCTACAAGTCCCAGTT	57.888	50.000	7.71	0.00	46.31	3.16
2438	2578	3.884467	TGGGTCTACAAGTCCCAGT	57.116	52.632	7.71	0.00	46.31	4.00
2447	2587	2.107378	TGGTGAGCAAATTGGGTCTACA	59.893	45.455	13.06	8.90	36.30	2.74
2449	2589	2.107378	TGTGGTGAGCAAATTGGGTCTA	59.893	45.455	13.06	0.00	36.30	2.59
2454	2594	2.095059	GCTACTGTGGTGAGCAAATTGG	60.095	50.000	0.00	0.00	36.20	3.16
2469	2609	2.230508	TCCTTGGTGTAACTCGCTACTG	59.769	50.000	0.00	0.00	36.74	2.74
2679	4171	5.948992	AGAATCTAAAAGACTGTGTTGGC	57.051	39.130	0.00	0.00	0.00	4.52
2728	4236	2.277084	GACCGTGCCATTTAGTAGTGG	58.723	52.381	0.47	0.47	38.55	4.00
2743	4251	3.096852	TCCATGAGTACTCAATGACCGT	58.903	45.455	28.43	8.34	43.58	4.83
2761	4276	1.416401	GGACTGAAGTGGTTGACTCCA	59.584	52.381	0.00	0.00	31.73	3.86
2839	4373	0.447801	ATGCATCGTTCTTTGTCGGC	59.552	50.000	0.00	0.00	0.00	5.54
2841	4375	4.218265	TCAAAATGCATCGTTCTTTGTCG	58.782	39.130	16.47	0.00	0.00	4.35
2858	4392	1.342275	CCCCTCCATCCATGCTCAAAA	60.342	52.381	0.00	0.00	0.00	2.44
2864	4398	2.114838	GCTCCCCTCCATCCATGC	59.885	66.667	0.00	0.00	0.00	4.06
2901	4436	3.306780	GCACTGCTTAGTGGGTTCTTAGA	60.307	47.826	9.24	0.00	39.97	2.10
2918	4453	5.577945	CCAAAATTTTACCATGCTAGCACTG	59.422	40.000	22.07	18.16	0.00	3.66
2922	4457	7.817478	AGTAAACCAAAATTTTACCATGCTAGC	59.183	33.333	8.10	8.10	39.34	3.42
2923	4458	9.353999	GAGTAAACCAAAATTTTACCATGCTAG	57.646	33.333	2.44	0.00	39.34	3.42
2924	4459	8.024285	CGAGTAAACCAAAATTTTACCATGCTA	58.976	33.333	2.44	0.00	39.34	3.49
2935	4473	5.125739	TGTGGTGTTCGAGTAAACCAAAATT	59.874	36.000	0.52	0.00	44.02	1.82
2936	4474	4.641094	TGTGGTGTTCGAGTAAACCAAAAT	59.359	37.500	0.52	0.00	44.02	1.82
2980	4519	0.179048	AATGGCCGATTGCGATCAGA	60.179	50.000	14.39	0.00	37.43	3.27
3015	6004	6.159988	GTGATTGTATGAGATAGGTACTGCC	58.840	44.000	0.00	0.00	41.52	4.85
3017	6006	7.203255	TCGTGATTGTATGAGATAGGTACTG	57.797	40.000	0.00	0.00	41.52	2.74
3062	6278	6.398234	TCTGACTATCCTAGAAGTGCATTC	57.602	41.667	0.00	0.00	38.28	2.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.