Multiple sequence alignment - TraesCS2B01G161000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G161000 chr2B 100.000 4950 0 0 1 4950 134258772 134253823 0.000000e+00 9142.0
1 TraesCS2B01G161000 chr2B 79.718 779 156 2 3003 3780 134569747 134568970 3.350000e-156 562.0
2 TraesCS2B01G161000 chr2B 73.491 1392 324 38 2571 3944 134480070 134478706 7.450000e-133 484.0
3 TraesCS2B01G161000 chr2B 81.481 189 30 4 997 1183 134543562 134543377 3.090000e-32 150.0
4 TraesCS2B01G161000 chr2B 75.918 245 51 6 1016 1256 134249505 134249265 8.700000e-23 119.0
5 TraesCS2B01G161000 chr2B 76.744 215 41 7 1048 1256 134386462 134386251 1.460000e-20 111.0
6 TraesCS2B01G161000 chr2D 95.188 2577 89 5 2401 4950 82228774 82226206 0.000000e+00 4039.0
7 TraesCS2B01G161000 chr2D 89.766 1456 67 25 2 1385 82232908 82231463 0.000000e+00 1788.0
8 TraesCS2B01G161000 chr2D 78.296 751 156 6 3968 4716 82873461 82872716 1.250000e-130 477.0
9 TraesCS2B01G161000 chr2D 90.909 275 21 3 2082 2356 82229050 82228780 2.820000e-97 366.0
10 TraesCS2B01G161000 chr2D 85.484 186 25 2 1070 1254 82865379 82865195 5.060000e-45 193.0
11 TraesCS2B01G161000 chr2D 80.080 251 44 5 1007 1254 82660317 82660070 1.090000e-41 182.0
12 TraesCS2B01G161000 chr2D 85.795 176 11 7 1494 1660 82230394 82230224 1.830000e-39 174.0
13 TraesCS2B01G161000 chr2D 79.008 262 46 7 997 1254 82578786 82578530 2.370000e-38 171.0
14 TraesCS2B01G161000 chr2D 87.129 101 10 1 2523 2623 82648179 82648082 1.460000e-20 111.0
15 TraesCS2B01G161000 chr2D 84.000 100 13 1 2523 2622 82656490 82656394 5.280000e-15 93.5
16 TraesCS2B01G161000 chr2D 80.172 116 9 9 1450 1562 420173659 420173763 1.910000e-09 75.0
17 TraesCS2B01G161000 chr2D 100.000 35 0 0 1889 1923 82229083 82229049 1.150000e-06 65.8
18 TraesCS2B01G161000 chr1B 84.010 419 54 4 2 411 312705910 312706324 1.670000e-104 390.0
19 TraesCS2B01G161000 chr3D 84.211 418 47 7 2 409 315486884 315487292 6.010000e-104 388.0
20 TraesCS2B01G161000 chr3D 87.043 301 34 5 1 298 482514887 482514589 7.940000e-88 335.0
21 TraesCS2B01G161000 chr7B 83.294 419 58 7 5 417 380544997 380544585 4.680000e-100 375.0
22 TraesCS2B01G161000 chr1D 82.783 424 56 5 2 416 185078185 185078600 3.640000e-96 363.0
23 TraesCS2B01G161000 chr1D 80.660 424 67 14 1 419 322160292 322160705 1.030000e-81 315.0
24 TraesCS2B01G161000 chr7D 82.423 421 60 4 5 415 412397596 412397180 6.090000e-94 355.0
25 TraesCS2B01G161000 chr7D 78.723 141 25 3 1749 1885 565183382 565183243 6.820000e-14 89.8
26 TraesCS2B01G161000 chr6A 80.529 416 68 9 2 409 464600723 464601133 1.730000e-79 307.0
27 TraesCS2B01G161000 chr6A 88.095 126 14 1 1760 1885 614780326 614780450 1.110000e-31 148.0
28 TraesCS2B01G161000 chr5D 96.089 179 7 0 1909 2087 151671722 151671544 4.850000e-75 292.0
29 TraesCS2B01G161000 chr5D 88.525 122 13 1 1748 1869 387984501 387984381 3.990000e-31 147.0
30 TraesCS2B01G161000 chr5D 83.088 136 19 4 1751 1885 55048751 55048619 2.420000e-23 121.0
31 TraesCS2B01G161000 chr2A 97.546 163 4 0 1921 2083 189020836 189020998 3.770000e-71 279.0
32 TraesCS2B01G161000 chr2A 81.275 251 41 5 1007 1254 83593528 83593281 1.090000e-46 198.0
33 TraesCS2B01G161000 chr2A 83.069 189 27 4 997 1183 83213652 83213467 3.060000e-37 167.0
34 TraesCS2B01G161000 chr2A 77.720 193 31 8 1070 1256 82364266 82364080 1.880000e-19 108.0
35 TraesCS2B01G161000 chr2A 82.906 117 14 5 1443 1556 294957192 294957079 3.150000e-17 100.0
36 TraesCS2B01G161000 chr2A 93.750 64 4 0 2559 2622 83587587 83587524 4.080000e-16 97.1
37 TraesCS2B01G161000 chr2A 90.566 53 5 0 1581 1633 186441991 186442043 2.470000e-08 71.3
38 TraesCS2B01G161000 chr4B 95.906 171 6 1 1918 2087 586317319 586317489 4.880000e-70 276.0
39 TraesCS2B01G161000 chr6D 95.882 170 6 1 1918 2087 204160015 204160183 1.760000e-69 274.0
40 TraesCS2B01G161000 chr6D 87.395 119 13 2 1749 1866 82643201 82643318 8.640000e-28 135.0
41 TraesCS2B01G161000 chr1A 95.882 170 6 1 1922 2091 254349076 254348908 1.760000e-69 274.0
42 TraesCS2B01G161000 chr3B 94.857 175 7 2 1910 2083 37969121 37969294 6.310000e-69 272.0
43 TraesCS2B01G161000 chr3A 92.973 185 11 2 1907 2091 745031375 745031193 8.170000e-68 268.0
44 TraesCS2B01G161000 chr3A 92.432 185 12 2 1907 2091 744958449 744958267 3.800000e-66 263.0
45 TraesCS2B01G161000 chr3A 92.432 185 12 2 1907 2091 745098286 745098104 3.800000e-66 263.0
46 TraesCS2B01G161000 chr3A 95.238 42 2 0 1757 1798 114243391 114243432 3.200000e-07 67.6
47 TraesCS2B01G161000 chr4A 75.847 236 26 18 1412 1628 619368993 619369216 1.900000e-14 91.6
48 TraesCS2B01G161000 chr4A 88.525 61 7 0 1413 1473 632955807 632955747 1.910000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G161000 chr2B 134253823 134258772 4949 True 9142.00 9142 100.0000 1 4950 1 chr2B.!!$R2 4949
1 TraesCS2B01G161000 chr2B 134568970 134569747 777 True 562.00 562 79.7180 3003 3780 1 chr2B.!!$R6 777
2 TraesCS2B01G161000 chr2B 134478706 134480070 1364 True 484.00 484 73.4910 2571 3944 1 chr2B.!!$R4 1373
3 TraesCS2B01G161000 chr2D 82226206 82232908 6702 True 1286.56 4039 92.3316 2 4950 5 chr2D.!!$R5 4948
4 TraesCS2B01G161000 chr2D 82872716 82873461 745 True 477.00 477 78.2960 3968 4716 1 chr2D.!!$R4 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 459 0.585764 CGACAGTCGTACGATGGTCG 60.586 60.0 36.66 36.66 42.35 4.79 F
1811 3437 0.251922 TTACACCCGGCCTCTGTACT 60.252 55.0 0.00 0.00 0.00 2.73 F
2731 4717 0.033228 TTGCAATTGGCCGGTTTCTG 59.967 50.0 7.72 0.00 43.89 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 3445 0.107017 ATCCAGGATGCCTTTGGACG 60.107 55.0 0.00 0.00 43.32 4.79 R
3544 5533 0.530650 CGTGGATCATCTGAACCCCG 60.531 60.0 4.27 1.04 36.29 5.73 R
4219 6231 0.320421 TCGCAGAGCTACACCAAACC 60.320 55.0 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.609423 ACGGTAAGAGATGACTACGATACT 58.391 41.667 0.00 0.00 0.00 2.12
26 27 5.695816 ACGGTAAGAGATGACTACGATACTC 59.304 44.000 0.00 0.00 0.00 2.59
65 66 1.406539 ACTCACACGTTAACACTCCGT 59.593 47.619 6.39 0.00 34.71 4.69
137 138 7.959658 AGTTTGGGTTGATTCAATATGATCA 57.040 32.000 0.00 0.00 0.00 2.92
173 174 7.148407 CGTCATATTCTTGAAGCTGTTTTAGGT 60.148 37.037 0.00 0.00 39.21 3.08
179 180 9.696917 ATTCTTGAAGCTGTTTTAGGTTAATTG 57.303 29.630 0.00 0.00 46.53 2.32
224 225 7.713734 AGATCCAGAAAACATGATCACAAAT 57.286 32.000 0.00 0.00 36.84 2.32
261 262 4.214758 GTCTTAGAGGCGAGACTAGGAATC 59.785 50.000 0.00 0.00 39.30 2.52
291 292 7.804614 TTACCGTTTATCATTTCAAATGTGC 57.195 32.000 9.98 0.00 0.00 4.57
415 445 6.873997 TGCATATAGGGTATATTTCCGACAG 58.126 40.000 0.00 0.00 0.00 3.51
418 448 5.640189 ATAGGGTATATTTCCGACAGTCG 57.360 43.478 16.50 16.50 40.07 4.18
421 451 4.276926 AGGGTATATTTCCGACAGTCGTAC 59.723 45.833 21.34 14.72 38.40 3.67
429 459 0.585764 CGACAGTCGTACGATGGTCG 60.586 60.000 36.66 36.66 42.35 4.79
436 466 2.162754 GTACGATGGTCGGCGTTGG 61.163 63.158 6.85 0.00 45.59 3.77
447 477 4.126524 GCGTTGGAGATGCCCTAC 57.873 61.111 0.00 0.00 34.03 3.18
449 479 1.090052 GCGTTGGAGATGCCCTACAC 61.090 60.000 0.00 0.00 34.86 2.90
461 491 1.881925 GCCCTACACAGCACATTGTCA 60.882 52.381 0.00 0.00 0.00 3.58
464 494 4.260985 CCCTACACAGCACATTGTCATTA 58.739 43.478 0.00 0.00 0.00 1.90
498 543 4.364415 TCACTTGAAACTTGAAAACCGG 57.636 40.909 0.00 0.00 0.00 5.28
499 544 3.759618 TCACTTGAAACTTGAAAACCGGT 59.240 39.130 0.00 0.00 0.00 5.28
500 545 4.102649 CACTTGAAACTTGAAAACCGGTC 58.897 43.478 8.04 0.00 0.00 4.79
506 551 0.666374 CTTGAAAACCGGTCGCCTTT 59.334 50.000 8.04 4.20 0.00 3.11
512 557 1.104630 AACCGGTCGCCTTTTGAAAA 58.895 45.000 8.04 0.00 0.00 2.29
540 596 1.760405 AATCCCTCACCTTCCCAACT 58.240 50.000 0.00 0.00 0.00 3.16
543 599 2.196595 TCCCTCACCTTCCCAACTATG 58.803 52.381 0.00 0.00 0.00 2.23
562 623 1.209261 TGGATGCACACGACCATGTAT 59.791 47.619 0.00 0.00 0.00 2.29
592 653 1.340248 TCAGACAACCGTCCTTCTCAC 59.660 52.381 0.00 0.00 43.73 3.51
596 657 1.485066 ACAACCGTCCTTCTCACACTT 59.515 47.619 0.00 0.00 0.00 3.16
656 724 2.036475 TCCTTCTCATAGCCTCAATCGC 59.964 50.000 0.00 0.00 0.00 4.58
661 729 1.837051 ATAGCCTCAATCGCGGGGA 60.837 57.895 6.13 0.00 0.00 4.81
699 769 2.133359 AAAACGGTAGGAGGGGGCAC 62.133 60.000 0.00 0.00 0.00 5.01
726 796 3.054875 TGATGGGAGAGGTGAAAGTGATG 60.055 47.826 0.00 0.00 0.00 3.07
727 797 2.619931 TGGGAGAGGTGAAAGTGATGA 58.380 47.619 0.00 0.00 0.00 2.92
734 804 5.303971 AGAGGTGAAAGTGATGAAAGTGAG 58.696 41.667 0.00 0.00 0.00 3.51
799 870 2.593346 ACTTGGAATTTTGTTGCGCA 57.407 40.000 5.66 5.66 0.00 6.09
825 896 5.296151 TGGCTGATATTTCTCGGAGATTT 57.704 39.130 8.81 2.18 33.89 2.17
827 898 6.122277 TGGCTGATATTTCTCGGAGATTTTT 58.878 36.000 8.81 0.00 33.89 1.94
907 978 2.624838 ACATGTCTTCCTTGGCAAACAG 59.375 45.455 0.00 0.00 0.00 3.16
935 1006 2.591429 TGTGGCTTGCAGTGGACG 60.591 61.111 0.00 0.00 0.00 4.79
936 1007 2.591715 GTGGCTTGCAGTGGACGT 60.592 61.111 0.00 0.00 0.00 4.34
937 1008 1.301401 GTGGCTTGCAGTGGACGTA 60.301 57.895 0.00 0.00 0.00 3.57
938 1009 1.301401 TGGCTTGCAGTGGACGTAC 60.301 57.895 0.00 0.00 0.00 3.67
939 1010 2.380410 GGCTTGCAGTGGACGTACG 61.380 63.158 15.01 15.01 0.00 3.67
960 1031 3.702048 TGACCAGTACGCTGCCCC 61.702 66.667 0.00 0.00 41.26 5.80
985 1056 2.055310 TATACGACGGTGCGCTGAGG 62.055 60.000 14.30 6.35 33.86 3.86
1146 1217 2.970639 GCTCTGGGTACGCTGACA 59.029 61.111 14.31 0.00 0.00 3.58
1227 1298 2.159572 CGATTTTTGGATGGTGACGACC 60.160 50.000 0.00 0.00 43.48 4.79
1284 1355 9.277783 ACTATACACATCTTTCATTTCCATAGC 57.722 33.333 0.00 0.00 0.00 2.97
1293 1364 5.929697 TTCATTTCCATAGCACATCGATC 57.070 39.130 0.00 0.00 0.00 3.69
1344 1416 5.400188 CGACGTACACAGTTTCAAGAATACA 59.600 40.000 0.00 0.00 0.00 2.29
1350 1422 5.760253 ACACAGTTTCAAGAATACAGTGGAG 59.240 40.000 16.53 4.66 0.00 3.86
1385 1458 4.884744 TCTCTAGAGGAAAGGAGATGAACG 59.115 45.833 19.67 0.00 31.02 3.95
1386 1459 2.682155 AGAGGAAAGGAGATGAACGC 57.318 50.000 0.00 0.00 0.00 4.84
1400 1473 5.484173 GATGAACGCATCCTTGATTTACA 57.516 39.130 0.00 0.00 44.12 2.41
1401 1474 4.678509 TGAACGCATCCTTGATTTACAC 57.321 40.909 0.00 0.00 0.00 2.90
1402 1475 3.124466 TGAACGCATCCTTGATTTACACG 59.876 43.478 0.00 0.00 0.00 4.49
1403 1476 2.967362 ACGCATCCTTGATTTACACGA 58.033 42.857 0.00 0.00 0.00 4.35
1404 1477 3.331150 ACGCATCCTTGATTTACACGAA 58.669 40.909 0.00 0.00 0.00 3.85
1406 1479 4.394920 ACGCATCCTTGATTTACACGAATT 59.605 37.500 0.00 0.00 0.00 2.17
1409 1482 6.237279 CGCATCCTTGATTTACACGAATTTTG 60.237 38.462 0.00 0.00 0.00 2.44
1411 1484 7.410728 GCATCCTTGATTTACACGAATTTTGTG 60.411 37.037 14.08 14.08 42.99 3.33
1412 1485 6.442952 TCCTTGATTTACACGAATTTTGTGG 58.557 36.000 18.72 3.89 41.64 4.17
1413 1486 5.633182 CCTTGATTTACACGAATTTTGTGGG 59.367 40.000 18.72 6.04 41.64 4.61
1414 1487 6.392625 TTGATTTACACGAATTTTGTGGGA 57.607 33.333 18.72 5.81 41.64 4.37
1415 1488 6.392625 TGATTTACACGAATTTTGTGGGAA 57.607 33.333 18.72 13.20 41.64 3.97
1418 1491 7.596995 TGATTTACACGAATTTTGTGGGAATTC 59.403 33.333 18.72 16.06 41.64 2.17
1419 1492 6.642707 TTACACGAATTTTGTGGGAATTCT 57.357 33.333 18.72 1.45 41.64 2.40
1420 1493 4.870363 ACACGAATTTTGTGGGAATTCTG 58.130 39.130 18.72 7.35 41.64 3.02
1425 1566 5.048083 CGAATTTTGTGGGAATTCTGAAGGA 60.048 40.000 5.23 0.00 39.95 3.36
1431 1572 5.886609 TGTGGGAATTCTGAAGGACATAAA 58.113 37.500 5.23 0.00 0.00 1.40
1432 1573 6.493166 TGTGGGAATTCTGAAGGACATAAAT 58.507 36.000 5.23 0.00 0.00 1.40
1434 1575 7.454380 TGTGGGAATTCTGAAGGACATAAATTT 59.546 33.333 5.23 0.00 29.83 1.82
1437 1578 9.803315 GGGAATTCTGAAGGACATAAATTTTAC 57.197 33.333 5.23 0.00 29.83 2.01
1474 2531 7.507616 TCTTTGAAGCCTTTTGGTTTATAGGAA 59.492 33.333 0.00 0.00 43.27 3.36
1475 2532 7.790782 TTGAAGCCTTTTGGTTTATAGGAAT 57.209 32.000 0.00 0.00 43.27 3.01
1476 2533 7.169158 TGAAGCCTTTTGGTTTATAGGAATG 57.831 36.000 0.00 0.00 43.27 2.67
1477 2534 6.154363 TGAAGCCTTTTGGTTTATAGGAATGG 59.846 38.462 0.00 0.00 43.27 3.16
1478 2535 4.962362 AGCCTTTTGGTTTATAGGAATGGG 59.038 41.667 0.00 0.00 42.99 4.00
1479 2536 4.959839 GCCTTTTGGTTTATAGGAATGGGA 59.040 41.667 0.00 0.00 42.99 4.37
1480 2537 5.602561 GCCTTTTGGTTTATAGGAATGGGAT 59.397 40.000 0.00 0.00 42.99 3.85
1481 2538 6.099701 GCCTTTTGGTTTATAGGAATGGGATT 59.900 38.462 0.00 0.00 42.99 3.01
1482 2539 7.365563 GCCTTTTGGTTTATAGGAATGGGATTT 60.366 37.037 0.00 0.00 42.99 2.17
1483 2540 8.548025 CCTTTTGGTTTATAGGAATGGGATTTT 58.452 33.333 0.00 0.00 34.07 1.82
1496 2553 8.581253 GGAATGGGATTTTATTCCTATGTAGG 57.419 38.462 8.37 0.00 45.66 3.18
1559 2617 5.147767 AGCCTAGACCCAATGAAAAAGTTT 58.852 37.500 0.00 0.00 0.00 2.66
1648 2713 2.172717 GGAGGCAAATACTAGCTGGGAA 59.827 50.000 0.85 0.00 0.00 3.97
1649 2714 3.181439 GGAGGCAAATACTAGCTGGGAAT 60.181 47.826 0.85 0.00 0.00 3.01
1650 2715 4.041691 GGAGGCAAATACTAGCTGGGAATA 59.958 45.833 0.85 0.00 0.00 1.75
1654 2719 6.717084 AGGCAAATACTAGCTGGGAATATTTC 59.283 38.462 0.85 0.00 0.00 2.17
1709 3335 9.225201 CTCATAATAACCATTTGATGTTTGTCG 57.775 33.333 0.00 0.00 0.00 4.35
1716 3342 5.221422 ACCATTTGATGTTTGTCGGTCAAAT 60.221 36.000 3.86 6.41 46.49 2.32
1718 3344 6.128849 CCATTTGATGTTTGTCGGTCAAATTC 60.129 38.462 8.88 5.53 44.46 2.17
1719 3345 4.497473 TGATGTTTGTCGGTCAAATTCC 57.503 40.909 3.86 0.00 45.88 3.01
1725 3351 4.561735 TTGTCGGTCAAATTCCAACTTC 57.438 40.909 0.00 0.00 32.64 3.01
1730 3356 2.307049 GTCAAATTCCAACTTCGCACG 58.693 47.619 0.00 0.00 0.00 5.34
1731 3357 1.052287 CAAATTCCAACTTCGCACGC 58.948 50.000 0.00 0.00 0.00 5.34
1738 3364 1.522806 AACTTCGCACGCTGAACCA 60.523 52.632 0.00 0.00 0.00 3.67
1740 3366 1.082756 CTTCGCACGCTGAACCAAC 60.083 57.895 0.00 0.00 0.00 3.77
1747 3373 1.999735 CACGCTGAACCAACGACATAT 59.000 47.619 0.00 0.00 0.00 1.78
1748 3374 2.415168 CACGCTGAACCAACGACATATT 59.585 45.455 0.00 0.00 0.00 1.28
1780 3406 9.811995 CCGACAAAGGGAATATATAAATATCGA 57.188 33.333 0.00 0.00 0.00 3.59
1801 3427 4.923871 CGAGAAGATATCAATTACACCCGG 59.076 45.833 5.32 0.00 0.00 5.73
1803 3429 3.418684 AGATATCAATTACACCCGGCC 57.581 47.619 5.32 0.00 0.00 6.13
1805 3431 2.922740 TATCAATTACACCCGGCCTC 57.077 50.000 0.00 0.00 0.00 4.70
1811 3437 0.251922 TTACACCCGGCCTCTGTACT 60.252 55.000 0.00 0.00 0.00 2.73
1819 3445 2.416972 CCGGCCTCTGTACTAACAAGAC 60.417 54.545 0.00 0.00 34.49 3.01
1834 3460 0.693049 AAGACGTCCAAAGGCATCCT 59.307 50.000 13.01 0.00 33.87 3.24
1849 3475 2.038952 GCATCCTGGATATACACAGCCA 59.961 50.000 9.27 0.00 33.43 4.75
1850 3476 3.496692 GCATCCTGGATATACACAGCCAA 60.497 47.826 9.27 0.00 33.43 4.52
1851 3477 4.321718 CATCCTGGATATACACAGCCAAG 58.678 47.826 9.27 0.00 33.43 3.61
1852 3478 3.653164 TCCTGGATATACACAGCCAAGA 58.347 45.455 0.00 0.00 33.43 3.02
1853 3479 4.037222 TCCTGGATATACACAGCCAAGAA 58.963 43.478 0.00 0.00 33.43 2.52
1854 3480 4.473196 TCCTGGATATACACAGCCAAGAAA 59.527 41.667 0.00 0.00 33.43 2.52
1855 3481 4.818546 CCTGGATATACACAGCCAAGAAAG 59.181 45.833 0.00 0.00 33.43 2.62
1856 3482 5.396772 CCTGGATATACACAGCCAAGAAAGA 60.397 44.000 0.00 0.00 33.43 2.52
1857 3483 6.061022 TGGATATACACAGCCAAGAAAGAA 57.939 37.500 0.00 0.00 0.00 2.52
1860 3486 7.615365 TGGATATACACAGCCAAGAAAGAAAAT 59.385 33.333 0.00 0.00 0.00 1.82
1869 3495 9.836864 ACAGCCAAGAAAGAAAATAAAAAGAAT 57.163 25.926 0.00 0.00 0.00 2.40
1927 3913 9.174166 ACATTGTACAAATTAGAACATACTCCC 57.826 33.333 13.23 0.00 0.00 4.30
1928 3914 9.396022 CATTGTACAAATTAGAACATACTCCCT 57.604 33.333 13.23 0.00 0.00 4.20
1929 3915 9.614792 ATTGTACAAATTAGAACATACTCCCTC 57.385 33.333 13.23 0.00 0.00 4.30
1930 3916 7.562135 TGTACAAATTAGAACATACTCCCTCC 58.438 38.462 0.00 0.00 0.00 4.30
1931 3917 5.671493 ACAAATTAGAACATACTCCCTCCG 58.329 41.667 0.00 0.00 0.00 4.63
1932 3918 5.189145 ACAAATTAGAACATACTCCCTCCGT 59.811 40.000 0.00 0.00 0.00 4.69
1933 3919 5.952347 AATTAGAACATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
1934 3920 4.996788 TTAGAACATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 36.95 3.95
1935 3921 2.108970 AGAACATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 37.31 3.62
1936 3922 1.829222 GAACATACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 31.82 3.53
1937 3923 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
1938 3924 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
1939 3925 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
1940 3926 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
1941 3927 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
1942 3928 5.132144 ACATACTCCCTCCGTTCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
1943 3929 6.328148 ACATACTCCCTCCGTTCCAAAATATA 59.672 38.462 0.00 0.00 0.00 0.86
1944 3930 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
1945 3931 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
1946 3932 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
1947 3933 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
1948 3934 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
1949 3935 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
1950 3936 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
1951 3937 7.415206 CCCTCCGTTCCAAAATATAAGTCTTTG 60.415 40.741 0.00 0.00 0.00 2.77
1952 3938 7.120726 CCTCCGTTCCAAAATATAAGTCTTTGT 59.879 37.037 0.00 0.00 0.00 2.83
1953 3939 9.158233 CTCCGTTCCAAAATATAAGTCTTTGTA 57.842 33.333 0.00 0.00 0.00 2.41
1954 3940 9.158233 TCCGTTCCAAAATATAAGTCTTTGTAG 57.842 33.333 0.00 0.00 0.00 2.74
1955 3941 9.158233 CCGTTCCAAAATATAAGTCTTTGTAGA 57.842 33.333 0.00 0.00 0.00 2.59
1969 3955 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
1970 3956 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
1971 3957 7.492994 GTCTTTGTAGAGATTTCACTATGGACC 59.507 40.741 0.00 0.00 0.00 4.46
1972 3958 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
1973 3959 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1974 3960 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1975 3961 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
1976 3962 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
1977 3963 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
1978 3964 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
1979 3965 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
1980 3966 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
1981 3967 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
1982 3968 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
1984 3970 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
1985 3971 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
2000 3986 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
2001 3987 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
2002 3988 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
2003 3989 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
2004 3990 9.929180 GGATGTATGTAGATGCATTTTAGAGTA 57.071 33.333 0.00 0.00 35.26 2.59
2024 4010 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
2025 4011 8.703743 AGAGTATAGATTCACTCATTTTGCTCT 58.296 33.333 4.70 0.00 42.99 4.09
2026 4012 8.659925 AGTATAGATTCACTCATTTTGCTCTG 57.340 34.615 0.00 0.00 0.00 3.35
2027 4013 8.263640 AGTATAGATTCACTCATTTTGCTCTGT 58.736 33.333 0.00 0.00 0.00 3.41
2028 4014 9.534565 GTATAGATTCACTCATTTTGCTCTGTA 57.465 33.333 0.00 0.00 0.00 2.74
2030 4016 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2031 4017 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2032 4018 5.868043 TCACTCATTTTGCTCTGTATGTG 57.132 39.130 0.00 0.00 0.00 3.21
2033 4019 4.696877 TCACTCATTTTGCTCTGTATGTGG 59.303 41.667 0.00 0.00 0.00 4.17
2034 4020 4.456911 CACTCATTTTGCTCTGTATGTGGT 59.543 41.667 0.00 0.00 0.00 4.16
2035 4021 4.697352 ACTCATTTTGCTCTGTATGTGGTC 59.303 41.667 0.00 0.00 0.00 4.02
2036 4022 4.009675 TCATTTTGCTCTGTATGTGGTCC 58.990 43.478 0.00 0.00 0.00 4.46
2037 4023 3.500448 TTTTGCTCTGTATGTGGTCCA 57.500 42.857 0.00 0.00 0.00 4.02
2038 4024 3.719268 TTTGCTCTGTATGTGGTCCAT 57.281 42.857 0.00 0.00 37.58 3.41
2039 4025 4.835284 TTTGCTCTGTATGTGGTCCATA 57.165 40.909 0.00 0.00 34.86 2.74
2040 4026 4.406648 TTGCTCTGTATGTGGTCCATAG 57.593 45.455 0.00 0.00 36.71 2.23
2041 4027 3.374764 TGCTCTGTATGTGGTCCATAGT 58.625 45.455 0.00 0.00 36.71 2.12
2042 4028 3.132824 TGCTCTGTATGTGGTCCATAGTG 59.867 47.826 0.00 0.00 36.71 2.74
2043 4029 3.493350 GCTCTGTATGTGGTCCATAGTGG 60.493 52.174 0.00 0.00 36.71 4.00
2044 4030 3.960755 CTCTGTATGTGGTCCATAGTGGA 59.039 47.826 0.00 0.00 45.98 4.02
2073 4059 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
2074 4060 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2075 4061 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
2076 4062 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
2077 4063 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
2078 4064 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2079 4065 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2080 4066 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2081 4067 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2082 4068 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2094 4080 5.566469 ACGGAGGGAGTATTTTGAATCAAA 58.434 37.500 4.03 4.03 0.00 2.69
2095 4081 5.648092 ACGGAGGGAGTATTTTGAATCAAAG 59.352 40.000 8.51 0.00 34.72 2.77
2096 4082 5.648092 CGGAGGGAGTATTTTGAATCAAAGT 59.352 40.000 8.51 8.61 34.72 2.66
2124 4110 9.530633 GTACCTCTTAGTGATATAGTTTTGTGG 57.469 37.037 0.00 0.00 0.00 4.17
2210 4196 9.467258 CTATTTTAAAGTGATGCAATATGGTGG 57.533 33.333 0.00 0.00 0.00 4.61
2211 4197 3.806625 AAAGTGATGCAATATGGTGGC 57.193 42.857 0.00 0.00 0.00 5.01
2218 4204 2.098614 TGCAATATGGTGGCGACAATT 58.901 42.857 0.00 0.00 46.06 2.32
2231 4217 3.689649 GGCGACAATTGGACAATAAGAGT 59.310 43.478 10.83 0.00 0.00 3.24
2256 4242 8.368126 GTCATCAATTTTGAAGTAAAGAATGCG 58.632 33.333 0.00 0.00 41.13 4.73
2258 4244 9.079833 CATCAATTTTGAAGTAAAGAATGCGAT 57.920 29.630 0.00 0.00 41.13 4.58
2279 4265 6.487960 CGATAGAGAAACAGTACTACCACTG 58.512 44.000 0.00 1.82 45.41 3.66
2281 4267 7.012515 CGATAGAGAAACAGTACTACCACTGAT 59.987 40.741 10.06 0.00 43.72 2.90
2325 4311 5.143376 AGATTTTGCAGAATCCAAACTGG 57.857 39.130 22.55 0.00 36.84 4.00
2336 4322 2.806434 TCCAAACTGGCTGTATGCATT 58.194 42.857 3.54 0.00 45.15 3.56
2338 4324 2.492881 CCAAACTGGCTGTATGCATTCA 59.507 45.455 3.54 4.91 45.15 2.57
2356 4342 0.390860 CAAGGATGTAGAGGCCGAGG 59.609 60.000 0.00 0.00 0.00 4.63
2358 4344 0.485099 AGGATGTAGAGGCCGAGGAT 59.515 55.000 0.00 0.00 0.00 3.24
2359 4345 1.133009 AGGATGTAGAGGCCGAGGATT 60.133 52.381 0.00 0.00 0.00 3.01
2360 4346 1.694696 GGATGTAGAGGCCGAGGATTT 59.305 52.381 0.00 0.00 0.00 2.17
2361 4347 2.104963 GGATGTAGAGGCCGAGGATTTT 59.895 50.000 0.00 0.00 0.00 1.82
2362 4348 2.981859 TGTAGAGGCCGAGGATTTTC 57.018 50.000 0.00 0.00 0.00 2.29
2363 4349 1.485066 TGTAGAGGCCGAGGATTTTCC 59.515 52.381 0.00 0.00 36.58 3.13
2380 4366 9.434275 AGGATTTTCCTTCCTTTTAGAAAGAAA 57.566 29.630 2.15 0.00 46.91 2.52
2385 4371 9.647797 TTTCCTTCCTTTTAGAAAGAAAAACAC 57.352 29.630 2.15 0.00 34.71 3.32
2386 4372 8.356000 TCCTTCCTTTTAGAAAGAAAAACACA 57.644 30.769 2.15 0.00 0.00 3.72
2387 4373 8.466798 TCCTTCCTTTTAGAAAGAAAAACACAG 58.533 33.333 2.15 0.00 0.00 3.66
2388 4374 8.466798 CCTTCCTTTTAGAAAGAAAAACACAGA 58.533 33.333 2.15 0.00 0.00 3.41
2389 4375 9.855021 CTTCCTTTTAGAAAGAAAAACACAGAA 57.145 29.630 2.15 0.00 0.00 3.02
2390 4376 9.855021 TTCCTTTTAGAAAGAAAAACACAGAAG 57.145 29.630 2.15 0.00 0.00 2.85
2391 4377 7.973944 TCCTTTTAGAAAGAAAAACACAGAAGC 59.026 33.333 2.15 0.00 0.00 3.86
2392 4378 7.044052 CCTTTTAGAAAGAAAAACACAGAAGCG 60.044 37.037 2.15 0.00 0.00 4.68
2393 4379 4.965119 AGAAAGAAAAACACAGAAGCGT 57.035 36.364 0.00 0.00 0.00 5.07
2394 4380 5.310720 AGAAAGAAAAACACAGAAGCGTT 57.689 34.783 0.00 0.00 0.00 4.84
2395 4381 5.095490 AGAAAGAAAAACACAGAAGCGTTG 58.905 37.500 0.00 0.00 0.00 4.10
2396 4382 4.434713 AAGAAAAACACAGAAGCGTTGT 57.565 36.364 0.00 0.00 0.00 3.32
2397 4383 5.554822 AAGAAAAACACAGAAGCGTTGTA 57.445 34.783 0.00 0.00 0.00 2.41
2398 4384 4.905269 AGAAAAACACAGAAGCGTTGTAC 58.095 39.130 0.00 0.00 0.00 2.90
2399 4385 4.634443 AGAAAAACACAGAAGCGTTGTACT 59.366 37.500 0.00 0.00 0.00 2.73
2414 4400 6.366332 AGCGTTGTACTAAATCTTGTCAAGAG 59.634 38.462 19.64 9.27 41.61 2.85
2430 4416 9.626045 CTTGTCAAGAGGAATTGGTTATTTTAC 57.374 33.333 6.76 0.00 0.00 2.01
2480 4466 4.545823 TGTCGATCCACTTTGTTTTGTC 57.454 40.909 0.00 0.00 0.00 3.18
2495 4481 3.297830 TTTGTCGATCGTGTGATGTCT 57.702 42.857 15.94 0.00 34.09 3.41
2656 4642 1.268066 TGGAGGTTATGGTGTGCGTA 58.732 50.000 0.00 0.00 0.00 4.42
2657 4643 1.206132 TGGAGGTTATGGTGTGCGTAG 59.794 52.381 0.00 0.00 0.00 3.51
2682 4668 6.428159 GTGATCTTGTATGGACATTGGATACC 59.572 42.308 0.00 0.00 34.86 2.73
2693 4679 2.844654 TTGGATACCACCAATGCCAT 57.155 45.000 0.00 0.00 43.79 4.40
2731 4717 0.033228 TTGCAATTGGCCGGTTTCTG 59.967 50.000 7.72 0.00 43.89 3.02
2861 4847 6.127101 GGCTATGGTTTTAGGTACAAGGATT 58.873 40.000 0.00 0.00 0.00 3.01
2876 4862 5.388654 ACAAGGATTTCTCAATTCACAGGT 58.611 37.500 0.00 0.00 0.00 4.00
2882 4868 9.753674 AGGATTTCTCAATTCACAGGTTTATTA 57.246 29.630 0.00 0.00 0.00 0.98
2926 4912 4.527038 TGGGCAGCATACCTAGTACTATTC 59.473 45.833 2.33 0.00 0.00 1.75
2927 4913 4.527038 GGGCAGCATACCTAGTACTATTCA 59.473 45.833 2.33 0.00 0.00 2.57
2966 4952 2.032030 ACAATCAGCAAACTTCGGTTCG 60.032 45.455 0.00 0.00 37.14 3.95
2996 4982 7.698970 GTGTAGTCAAACTAGTAGATTCTGCTC 59.301 40.741 7.61 0.00 30.12 4.26
2998 4984 7.475137 AGTCAAACTAGTAGATTCTGCTCTT 57.525 36.000 7.61 0.00 0.00 2.85
3107 5093 3.964909 TCAGTTCGGTACATGATCATCG 58.035 45.455 4.86 6.71 0.00 3.84
3211 5200 0.459585 CGCGCCTTATACCACAGTGT 60.460 55.000 0.00 0.00 0.00 3.55
3243 5232 2.754472 TGATGAACGTGTTGACAGGAG 58.246 47.619 10.45 0.00 35.83 3.69
3253 5242 1.340248 GTTGACAGGAGAACACTCGGA 59.660 52.381 0.00 0.00 0.00 4.55
3302 5291 6.885918 TCTCAATATATTGTATGCCATGGTGG 59.114 38.462 21.89 0.00 38.58 4.61
3368 5357 0.179084 TTCATTCATCCTCCGGCGAC 60.179 55.000 9.30 0.00 0.00 5.19
3403 5392 2.022428 TGCTGGATTTAGAGGTCCCCTA 60.022 50.000 0.00 0.00 31.76 3.53
3486 5475 2.499289 TGCTTGCTCCAAAGAAAACCAA 59.501 40.909 0.00 0.00 0.00 3.67
3500 5489 9.048446 CAAAGAAAACCAATCTCATCACATTTT 57.952 29.630 0.00 0.00 0.00 1.82
3510 5499 8.743099 CAATCTCATCACATTTTCAATCGATTG 58.257 33.333 28.48 28.48 39.10 2.67
3544 5533 5.886960 ACTCACCAAAGATGCAATTCTAC 57.113 39.130 0.00 0.00 0.00 2.59
3564 5553 0.815615 GGGGTTCAGATGATCCACGC 60.816 60.000 11.15 2.81 35.99 5.34
3792 5781 4.022503 ACTTCTAGACACTACCCACGAAAC 60.023 45.833 0.00 0.00 0.00 2.78
3851 5840 1.106285 GGCCAAACAAGATGCCCTAG 58.894 55.000 0.00 0.00 37.94 3.02
3870 5859 2.508526 AGTTGAGCAAGTTAGCAAGGG 58.491 47.619 0.00 0.00 36.85 3.95
3885 5874 1.122019 AAGGGCAGACAGAACTCCGT 61.122 55.000 0.00 0.00 0.00 4.69
4169 6181 4.065088 GTGAGACAGACCAAACAATGCTA 58.935 43.478 0.00 0.00 0.00 3.49
4219 6231 5.153950 AGACTTACAAGCACTAAAGGGAG 57.846 43.478 0.00 0.00 0.00 4.30
4280 6292 4.520492 CCTTTCCTGTTGAGTAACATTGCT 59.480 41.667 0.00 0.00 45.16 3.91
4357 6369 7.662258 AGAGATCATTAGAAATCTTGCCATGAG 59.338 37.037 0.00 0.00 32.43 2.90
4391 6403 0.178767 CAGAGATTGGGCACATCCGA 59.821 55.000 0.00 0.00 34.94 4.55
4421 6433 7.452562 TCATTAGCAGATTGATGTATGCCTTA 58.547 34.615 0.00 0.00 39.51 2.69
4605 6617 1.132643 GTGAGAGCCAGTACAGGTACG 59.867 57.143 6.14 0.43 40.80 3.67
4658 6670 1.476007 AAGCTCGGCCTGTTCTGAGT 61.476 55.000 0.00 0.00 40.67 3.41
4689 6701 8.087750 CAGACCTGAAGAATATCTCTTACATCC 58.912 40.741 0.00 0.00 44.82 3.51
4785 6801 4.418392 CAATCTTTCCTTACATGCTGCAC 58.582 43.478 3.57 0.00 0.00 4.57
4828 6844 9.556030 GTGCCTTACATCATTACTAAAGAAAAC 57.444 33.333 0.00 0.00 0.00 2.43
4923 6939 5.304778 TGCAACTGAGTAAGCTATTGTTGA 58.695 37.500 10.59 3.17 34.37 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.385267 AGTATCGTAGTCATCTCTTACCGTAT 58.615 38.462 0.00 0.00 0.00 3.06
12 13 5.626142 AGACCATGAGAGTATCGTAGTCAT 58.374 41.667 8.03 0.00 42.67 3.06
25 26 6.153000 GTGAGTTAGTTCCTTAGACCATGAGA 59.847 42.308 0.00 0.00 0.00 3.27
26 27 6.071334 TGTGAGTTAGTTCCTTAGACCATGAG 60.071 42.308 0.00 0.00 0.00 2.90
65 66 2.546368 GTCACAAGTCAACCGCATAACA 59.454 45.455 0.00 0.00 0.00 2.41
112 113 8.365060 TGATCATATTGAATCAACCCAAACTT 57.635 30.769 0.00 0.00 0.00 2.66
143 144 7.667043 AACAGCTTCAAGAATATGACGTTAA 57.333 32.000 0.00 0.00 0.00 2.01
144 145 7.667043 AAACAGCTTCAAGAATATGACGTTA 57.333 32.000 0.00 0.00 0.00 3.18
145 146 6.560253 AAACAGCTTCAAGAATATGACGTT 57.440 33.333 0.00 0.00 0.00 3.99
158 159 8.904834 TGTAACAATTAACCTAAAACAGCTTCA 58.095 29.630 0.00 0.00 0.00 3.02
159 160 9.177304 GTGTAACAATTAACCTAAAACAGCTTC 57.823 33.333 0.00 0.00 36.32 3.86
179 180 9.189723 GGATCTTACGATATGGTTAAGTGTAAC 57.810 37.037 0.00 0.00 39.18 2.50
191 192 8.593492 TCATGTTTTCTGGATCTTACGATATG 57.407 34.615 0.00 0.00 0.00 1.78
196 197 6.313658 TGTGATCATGTTTTCTGGATCTTACG 59.686 38.462 0.00 0.00 37.60 3.18
197 198 7.615582 TGTGATCATGTTTTCTGGATCTTAC 57.384 36.000 0.00 0.00 37.60 2.34
224 225 7.447545 TCGCCTCTAAGACTAGCTCAAATATTA 59.552 37.037 0.00 0.00 0.00 0.98
401 410 5.083136 TCGTACGACTGTCGGAAATATAC 57.917 43.478 30.81 21.08 45.59 1.47
402 411 5.334337 CCATCGTACGACTGTCGGAAATATA 60.334 44.000 30.81 12.64 45.59 0.86
403 412 4.534168 CATCGTACGACTGTCGGAAATAT 58.466 43.478 30.81 15.48 45.59 1.28
409 439 0.247974 GACCATCGTACGACTGTCGG 60.248 60.000 30.81 17.30 45.59 4.79
411 441 0.247974 CCGACCATCGTACGACTGTC 60.248 60.000 26.94 26.94 38.40 3.51
415 445 2.649975 CGCCGACCATCGTACGAC 60.650 66.667 22.14 6.84 39.02 4.34
418 448 2.162754 CCAACGCCGACCATCGTAC 61.163 63.158 0.00 0.00 38.40 3.67
421 451 2.629050 ATCTCCAACGCCGACCATCG 62.629 60.000 0.00 0.00 40.07 3.84
429 459 1.523938 GTAGGGCATCTCCAACGCC 60.524 63.158 0.00 0.00 45.47 5.68
436 466 0.250234 TGTGCTGTGTAGGGCATCTC 59.750 55.000 0.00 0.00 40.66 2.75
447 477 3.752747 TGGTCTAATGACAATGTGCTGTG 59.247 43.478 0.00 0.00 44.61 3.66
449 479 3.181503 GCTGGTCTAATGACAATGTGCTG 60.182 47.826 0.00 0.00 44.61 4.41
461 491 3.641434 AGTGATGCTTGCTGGTCTAAT 57.359 42.857 0.00 0.00 0.00 1.73
464 494 1.531423 CAAGTGATGCTTGCTGGTCT 58.469 50.000 0.00 0.00 46.68 3.85
512 557 5.519808 GGAAGGTGAGGGATTATCCTTTTT 58.480 41.667 11.40 0.00 38.42 1.94
540 596 1.209261 ACATGGTCGTGTGCATCCATA 59.791 47.619 0.00 0.00 38.43 2.74
543 599 1.953559 ATACATGGTCGTGTGCATCC 58.046 50.000 6.12 0.00 33.62 3.51
562 623 7.989416 AGGACGGTTGTCTGAAAAATAATAA 57.011 32.000 0.00 0.00 44.83 1.40
661 729 0.477597 TCAATGGAAGGACCCCACCT 60.478 55.000 0.00 0.00 42.69 4.00
699 769 3.819564 TTCACCTCTCCCATCAATACG 57.180 47.619 0.00 0.00 0.00 3.06
726 796 4.965119 ACAGTTTGTTGGTCTCACTTTC 57.035 40.909 0.00 0.00 0.00 2.62
727 797 5.497474 ACTACAGTTTGTTGGTCTCACTTT 58.503 37.500 0.00 0.00 0.00 2.66
734 804 9.797556 AAAAATCTTTACTACAGTTTGTTGGTC 57.202 29.630 0.00 0.00 0.00 4.02
799 870 5.080337 TCTCCGAGAAATATCAGCCATAGT 58.920 41.667 0.00 0.00 0.00 2.12
825 896 6.412362 TTCTGGCATTTAAAGTAGGCAAAA 57.588 33.333 12.94 6.20 36.07 2.44
827 898 7.559533 TCATATTCTGGCATTTAAAGTAGGCAA 59.440 33.333 12.94 3.43 36.07 4.52
935 1006 1.055338 GCGTACTGGTCACAACGTAC 58.945 55.000 0.00 0.00 34.28 3.67
936 1007 0.953727 AGCGTACTGGTCACAACGTA 59.046 50.000 0.00 0.00 34.28 3.57
937 1008 0.596600 CAGCGTACTGGTCACAACGT 60.597 55.000 0.00 0.00 40.48 3.99
938 1009 1.886861 GCAGCGTACTGGTCACAACG 61.887 60.000 0.00 0.00 44.63 4.10
939 1010 1.566018 GGCAGCGTACTGGTCACAAC 61.566 60.000 0.00 0.00 44.63 3.32
960 1031 2.333938 CACCGTCGTATAGGGCCG 59.666 66.667 0.00 0.00 36.53 6.13
985 1056 0.036388 TCCATCGCTTTGAGTGACCC 60.036 55.000 0.00 0.00 37.59 4.46
1146 1217 1.301954 GACGGTGGCCCAGGTAAAT 59.698 57.895 0.00 0.00 0.00 1.40
1218 1289 3.000727 CAGGAAAACTATGGTCGTCACC 58.999 50.000 0.00 0.00 44.10 4.02
1227 1298 1.668419 CGGCCTCCAGGAAAACTATG 58.332 55.000 0.00 0.00 37.39 2.23
1262 1333 6.883756 TGTGCTATGGAAATGAAAGATGTGTA 59.116 34.615 0.00 0.00 0.00 2.90
1263 1334 5.711506 TGTGCTATGGAAATGAAAGATGTGT 59.288 36.000 0.00 0.00 0.00 3.72
1293 1364 1.194322 TCGACACAAACATGCACATCG 59.806 47.619 0.00 0.00 0.00 3.84
1297 1368 2.466870 TTGTCGACACAAACATGCAC 57.533 45.000 19.90 0.00 39.69 4.57
1361 1434 5.358442 CGTTCATCTCCTTTCCTCTAGAGAA 59.642 44.000 21.76 10.46 38.76 2.87
1385 1458 6.586082 ACAAAATTCGTGTAAATCAAGGATGC 59.414 34.615 0.00 0.00 0.00 3.91
1386 1459 7.062138 CCACAAAATTCGTGTAAATCAAGGATG 59.938 37.037 7.08 0.00 32.26 3.51
1390 1463 6.442952 TCCCACAAAATTCGTGTAAATCAAG 58.557 36.000 7.08 0.00 32.26 3.02
1393 1466 7.812669 AGAATTCCCACAAAATTCGTGTAAATC 59.187 33.333 0.65 4.70 44.27 2.17
1394 1467 7.598493 CAGAATTCCCACAAAATTCGTGTAAAT 59.402 33.333 0.65 4.27 44.27 1.40
1395 1468 6.920758 CAGAATTCCCACAAAATTCGTGTAAA 59.079 34.615 0.65 2.54 44.27 2.01
1398 1471 4.582656 TCAGAATTCCCACAAAATTCGTGT 59.417 37.500 0.65 0.00 44.27 4.49
1399 1472 5.119931 TCAGAATTCCCACAAAATTCGTG 57.880 39.130 0.65 1.81 44.27 4.35
1400 1473 5.278957 CCTTCAGAATTCCCACAAAATTCGT 60.279 40.000 0.65 0.00 44.27 3.85
1401 1474 5.048083 TCCTTCAGAATTCCCACAAAATTCG 60.048 40.000 0.65 0.00 44.27 3.34
1402 1475 6.159293 GTCCTTCAGAATTCCCACAAAATTC 58.841 40.000 0.65 1.31 41.40 2.17
1403 1476 5.602145 TGTCCTTCAGAATTCCCACAAAATT 59.398 36.000 0.65 0.00 0.00 1.82
1404 1477 5.147032 TGTCCTTCAGAATTCCCACAAAAT 58.853 37.500 0.65 0.00 0.00 1.82
1406 1479 4.177537 TGTCCTTCAGAATTCCCACAAA 57.822 40.909 0.65 0.00 0.00 2.83
1409 1482 7.410120 AATTTATGTCCTTCAGAATTCCCAC 57.590 36.000 0.65 0.00 0.00 4.61
1411 1484 9.803315 GTAAAATTTATGTCCTTCAGAATTCCC 57.197 33.333 0.65 0.00 30.70 3.97
1441 1582 7.701539 ACCAAAAGGCTTCAAAGAAATTTTT 57.298 28.000 0.00 0.00 0.00 1.94
1442 1583 7.701539 AACCAAAAGGCTTCAAAGAAATTTT 57.298 28.000 0.00 0.00 0.00 1.82
1443 1584 7.701539 AAACCAAAAGGCTTCAAAGAAATTT 57.298 28.000 0.00 0.00 0.00 1.82
1444 1585 8.978874 ATAAACCAAAAGGCTTCAAAGAAATT 57.021 26.923 0.00 0.00 0.00 1.82
1445 1586 9.710900 CTATAAACCAAAAGGCTTCAAAGAAAT 57.289 29.630 0.00 0.00 0.00 2.17
1446 1587 8.147704 CCTATAAACCAAAAGGCTTCAAAGAAA 58.852 33.333 0.00 0.00 0.00 2.52
1448 1589 7.007723 TCCTATAAACCAAAAGGCTTCAAAGA 58.992 34.615 0.00 0.00 0.00 2.52
1449 1590 7.227049 TCCTATAAACCAAAAGGCTTCAAAG 57.773 36.000 0.00 0.00 0.00 2.77
1450 1591 7.604657 TTCCTATAAACCAAAAGGCTTCAAA 57.395 32.000 0.00 0.00 0.00 2.69
1451 1592 7.310361 CCATTCCTATAAACCAAAAGGCTTCAA 60.310 37.037 0.00 0.00 0.00 2.69
1455 1596 4.962362 CCCATTCCTATAAACCAAAAGGCT 59.038 41.667 0.00 0.00 0.00 4.58
1485 2542 9.116080 ATGATTGGTTCATATCCTACATAGGAA 57.884 33.333 11.67 2.65 44.96 3.36
1486 2543 8.685257 ATGATTGGTTCATATCCTACATAGGA 57.315 34.615 10.09 10.09 45.34 2.94
1487 2544 9.745018 AAATGATTGGTTCATATCCTACATAGG 57.255 33.333 0.00 0.00 44.51 2.57
1530 2587 5.450818 TTCATTGGGTCTAGGCTAATGTT 57.549 39.130 17.97 0.00 32.22 2.71
1532 2589 6.378280 ACTTTTTCATTGGGTCTAGGCTAATG 59.622 38.462 14.62 14.62 0.00 1.90
1574 2632 9.579932 GGGAATAGGAAAATCATAGAAAGTGAT 57.420 33.333 0.00 0.00 37.91 3.06
1575 2633 8.556589 TGGGAATAGGAAAATCATAGAAAGTGA 58.443 33.333 0.00 0.00 0.00 3.41
1618 2676 4.112634 AGTATTTGCCTCCTTTGGTTCA 57.887 40.909 0.00 0.00 0.00 3.18
1648 2713 7.643123 ACAAAAGTGATGGGAGTAGGAAATAT 58.357 34.615 0.00 0.00 0.00 1.28
1649 2714 7.027874 ACAAAAGTGATGGGAGTAGGAAATA 57.972 36.000 0.00 0.00 0.00 1.40
1650 2715 5.892348 ACAAAAGTGATGGGAGTAGGAAAT 58.108 37.500 0.00 0.00 0.00 2.17
1654 2719 7.703058 ATTTTACAAAAGTGATGGGAGTAGG 57.297 36.000 0.00 0.00 0.00 3.18
1660 2725 9.757227 TGAGTTTAATTTTACAAAAGTGATGGG 57.243 29.630 0.00 0.00 0.00 4.00
1687 3313 7.175119 TGACCGACAAACATCAAATGGTTATTA 59.825 33.333 0.00 0.00 38.32 0.98
1709 3335 2.661594 GTGCGAAGTTGGAATTTGACC 58.338 47.619 0.00 0.00 0.00 4.02
1716 3342 0.812014 TTCAGCGTGCGAAGTTGGAA 60.812 50.000 0.00 0.00 0.00 3.53
1718 3344 1.082756 GTTCAGCGTGCGAAGTTGG 60.083 57.895 0.00 0.00 0.00 3.77
1719 3345 1.082756 GGTTCAGCGTGCGAAGTTG 60.083 57.895 0.00 0.00 0.00 3.16
1725 3351 3.334751 TCGTTGGTTCAGCGTGCG 61.335 61.111 4.31 0.00 39.03 5.34
1754 3380 9.811995 TCGATATTTATATATTCCCTTTGTCGG 57.188 33.333 0.00 0.00 0.00 4.79
1780 3406 4.505039 GGCCGGGTGTAATTGATATCTTCT 60.505 45.833 2.18 0.00 0.00 2.85
1793 3419 0.625316 TAGTACAGAGGCCGGGTGTA 59.375 55.000 2.18 9.95 0.00 2.90
1799 3425 2.731341 CGTCTTGTTAGTACAGAGGCCG 60.731 54.545 0.00 0.00 35.28 6.13
1801 3427 3.500014 GACGTCTTGTTAGTACAGAGGC 58.500 50.000 8.70 0.00 35.28 4.70
1803 3429 4.761235 TGGACGTCTTGTTAGTACAGAG 57.239 45.455 16.46 0.00 35.28 3.35
1805 3431 4.684703 CCTTTGGACGTCTTGTTAGTACAG 59.315 45.833 16.46 0.00 35.28 2.74
1811 3437 2.623878 TGCCTTTGGACGTCTTGTTA 57.376 45.000 16.46 0.00 0.00 2.41
1819 3445 0.107017 ATCCAGGATGCCTTTGGACG 60.107 55.000 0.00 0.00 43.32 4.79
1834 3460 5.692115 TCTTTCTTGGCTGTGTATATCCA 57.308 39.130 0.00 0.00 0.00 3.41
1880 3506 6.368779 TGTTTGTTTCTAGTATACTGGGCT 57.631 37.500 15.90 0.00 0.00 5.19
1881 3507 7.120726 ACAATGTTTGTTTCTAGTATACTGGGC 59.879 37.037 15.90 7.38 42.22 5.36
1882 3508 8.561738 ACAATGTTTGTTTCTAGTATACTGGG 57.438 34.615 15.90 8.29 42.22 4.45
1923 3909 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1924 3910 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1925 3911 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1926 3912 7.120726 ACAAAGACTTATATTTTGGAACGGAGG 59.879 37.037 2.75 0.00 36.41 4.30
1927 3913 8.040716 ACAAAGACTTATATTTTGGAACGGAG 57.959 34.615 2.75 0.00 36.41 4.63
1928 3914 7.989416 ACAAAGACTTATATTTTGGAACGGA 57.011 32.000 2.75 0.00 36.41 4.69
1929 3915 9.158233 TCTACAAAGACTTATATTTTGGAACGG 57.842 33.333 2.75 0.00 36.41 4.44
1943 3929 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
1944 3930 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
1945 3931 7.492994 GGTCCATAGTGAAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 0.00 3.01
1946 3932 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
1947 3933 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
1948 3934 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
1949 3935 6.212589 TGTGGTCCATAGTGAAATCTCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
1950 3936 5.719563 TGTGGTCCATAGTGAAATCTCTACA 59.280 40.000 0.00 0.00 0.00 2.74
1951 3937 6.222038 TGTGGTCCATAGTGAAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
1952 3938 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
1953 3939 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
1954 3940 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
1955 3941 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
1956 3942 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
1957 3943 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
1958 3944 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
1959 3945 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
1960 3946 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
1961 3947 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
1962 3948 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
1963 3949 5.410924 CATACATCCGTATGTGGTCCATAG 58.589 45.833 3.56 0.00 46.70 2.23
1964 3950 5.400066 CATACATCCGTATGTGGTCCATA 57.600 43.478 3.56 0.00 46.70 2.74
1965 3951 4.271696 CATACATCCGTATGTGGTCCAT 57.728 45.455 3.56 0.00 46.70 3.41
1966 3952 3.744238 CATACATCCGTATGTGGTCCA 57.256 47.619 3.56 0.00 46.70 4.02
1974 3960 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
1975 3961 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
1976 3962 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
1977 3963 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
1978 3964 8.839310 ACTCTAAAATGCATCTACATACATCC 57.161 34.615 0.00 0.00 0.00 3.51
1998 3984 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
1999 3985 8.703743 AGAGCAAAATGAGTGAATCTATACTCT 58.296 33.333 0.00 0.00 42.86 3.24
2000 3986 8.763356 CAGAGCAAAATGAGTGAATCTATACTC 58.237 37.037 0.00 0.00 42.77 2.59
2001 3987 8.263640 ACAGAGCAAAATGAGTGAATCTATACT 58.736 33.333 0.00 0.00 0.00 2.12
2002 3988 8.430801 ACAGAGCAAAATGAGTGAATCTATAC 57.569 34.615 0.00 0.00 0.00 1.47
2004 3990 9.053840 CATACAGAGCAAAATGAGTGAATCTAT 57.946 33.333 0.00 0.00 0.00 1.98
2005 3991 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2006 3992 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2007 3993 6.965500 CACATACAGAGCAAAATGAGTGAATC 59.035 38.462 0.00 0.00 0.00 2.52
2008 3994 6.127814 CCACATACAGAGCAAAATGAGTGAAT 60.128 38.462 0.00 0.00 0.00 2.57
2009 3995 5.181811 CCACATACAGAGCAAAATGAGTGAA 59.818 40.000 0.00 0.00 0.00 3.18
2010 3996 4.696877 CCACATACAGAGCAAAATGAGTGA 59.303 41.667 0.00 0.00 0.00 3.41
2011 3997 4.456911 ACCACATACAGAGCAAAATGAGTG 59.543 41.667 0.00 0.00 0.00 3.51
2012 3998 4.655963 ACCACATACAGAGCAAAATGAGT 58.344 39.130 0.00 0.00 0.00 3.41
2013 3999 4.095483 GGACCACATACAGAGCAAAATGAG 59.905 45.833 0.00 0.00 0.00 2.90
2014 4000 4.009675 GGACCACATACAGAGCAAAATGA 58.990 43.478 0.00 0.00 0.00 2.57
2015 4001 3.758023 TGGACCACATACAGAGCAAAATG 59.242 43.478 0.00 0.00 0.00 2.32
2016 4002 4.032960 TGGACCACATACAGAGCAAAAT 57.967 40.909 0.00 0.00 0.00 1.82
2017 4003 3.500448 TGGACCACATACAGAGCAAAA 57.500 42.857 0.00 0.00 0.00 2.44
2018 4004 3.719268 ATGGACCACATACAGAGCAAA 57.281 42.857 0.00 0.00 38.26 3.68
2019 4005 3.774766 ACTATGGACCACATACAGAGCAA 59.225 43.478 0.00 0.00 41.03 3.91
2020 4006 3.132824 CACTATGGACCACATACAGAGCA 59.867 47.826 0.00 0.00 41.03 4.26
2021 4007 3.493350 CCACTATGGACCACATACAGAGC 60.493 52.174 0.00 0.00 40.96 4.09
2022 4008 3.960755 TCCACTATGGACCACATACAGAG 59.039 47.826 0.00 0.00 42.67 3.35
2023 4009 3.989056 TCCACTATGGACCACATACAGA 58.011 45.455 0.00 0.00 42.67 3.41
2047 4033 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
2048 4034 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
2049 4035 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
2050 4036 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
2051 4037 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
2052 4038 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2053 4039 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2054 4040 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2055 4041 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2056 4042 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2057 4043 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2058 4044 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2059 4045 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2060 4046 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
2061 4047 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2062 4048 7.126115 TCAAAATACTCCCTCCGTTCCTAAATA 59.874 37.037 0.00 0.00 0.00 1.40
2063 4049 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2064 4050 5.248934 TCAAAATACTCCCTCCGTTCCTAAA 59.751 40.000 0.00 0.00 0.00 1.85
2065 4051 4.778958 TCAAAATACTCCCTCCGTTCCTAA 59.221 41.667 0.00 0.00 0.00 2.69
2066 4052 4.355549 TCAAAATACTCCCTCCGTTCCTA 58.644 43.478 0.00 0.00 0.00 2.94
2067 4053 3.178865 TCAAAATACTCCCTCCGTTCCT 58.821 45.455 0.00 0.00 0.00 3.36
2068 4054 3.622166 TCAAAATACTCCCTCCGTTCC 57.378 47.619 0.00 0.00 0.00 3.62
2069 4055 5.183228 TGATTCAAAATACTCCCTCCGTTC 58.817 41.667 0.00 0.00 0.00 3.95
2070 4056 5.174037 TGATTCAAAATACTCCCTCCGTT 57.826 39.130 0.00 0.00 0.00 4.44
2071 4057 4.837093 TGATTCAAAATACTCCCTCCGT 57.163 40.909 0.00 0.00 0.00 4.69
2072 4058 5.648092 ACTTTGATTCAAAATACTCCCTCCG 59.352 40.000 12.62 0.35 32.75 4.63
2073 4059 7.829706 ACTACTTTGATTCAAAATACTCCCTCC 59.170 37.037 12.62 0.00 32.75 4.30
2074 4060 8.794335 ACTACTTTGATTCAAAATACTCCCTC 57.206 34.615 12.62 0.00 32.75 4.30
2075 4061 9.668497 GTACTACTTTGATTCAAAATACTCCCT 57.332 33.333 12.62 0.00 32.75 4.20
2076 4062 8.890718 GGTACTACTTTGATTCAAAATACTCCC 58.109 37.037 12.62 6.15 32.75 4.30
2077 4063 9.668497 AGGTACTACTTTGATTCAAAATACTCC 57.332 33.333 12.62 10.51 36.02 3.85
2210 4196 4.391830 TGACTCTTATTGTCCAATTGTCGC 59.608 41.667 4.43 0.00 33.83 5.19
2211 4197 6.313658 TGATGACTCTTATTGTCCAATTGTCG 59.686 38.462 4.43 0.00 33.83 4.35
2218 4204 8.634335 TCAAAATTGATGACTCTTATTGTCCA 57.366 30.769 0.00 0.00 31.25 4.02
2231 4217 8.296000 TCGCATTCTTTACTTCAAAATTGATGA 58.704 29.630 13.92 0.00 37.00 2.92
2241 4227 7.817478 TGTTTCTCTATCGCATTCTTTACTTCA 59.183 33.333 0.00 0.00 0.00 3.02
2256 4242 7.627298 TCAGTGGTAGTACTGTTTCTCTATC 57.373 40.000 5.39 0.00 46.32 2.08
2258 4244 7.120873 GTGATCAGTGGTAGTACTGTTTCTCTA 59.879 40.741 5.39 0.00 46.32 2.43
2279 4265 2.808523 TCAGATGCAGATCGGTGATC 57.191 50.000 0.00 0.00 39.17 2.92
2281 4267 3.333029 TTTTCAGATGCAGATCGGTGA 57.667 42.857 0.00 0.00 33.34 4.02
2310 4296 1.251251 ACAGCCAGTTTGGATTCTGC 58.749 50.000 0.00 0.00 40.96 4.26
2325 4311 5.059161 TCTACATCCTTGAATGCATACAGC 58.941 41.667 0.00 0.00 45.96 4.40
2336 4322 1.403814 CTCGGCCTCTACATCCTTGA 58.596 55.000 0.00 0.00 0.00 3.02
2338 4324 0.261991 TCCTCGGCCTCTACATCCTT 59.738 55.000 0.00 0.00 0.00 3.36
2359 4345 9.647797 GTGTTTTTCTTTCTAAAAGGAAGGAAA 57.352 29.630 9.35 9.35 44.00 3.13
2360 4346 8.808092 TGTGTTTTTCTTTCTAAAAGGAAGGAA 58.192 29.630 0.00 0.00 38.76 3.36
2361 4347 8.356000 TGTGTTTTTCTTTCTAAAAGGAAGGA 57.644 30.769 0.00 0.00 32.73 3.36
2362 4348 8.466798 TCTGTGTTTTTCTTTCTAAAAGGAAGG 58.533 33.333 0.00 0.00 32.73 3.46
2363 4349 9.855021 TTCTGTGTTTTTCTTTCTAAAAGGAAG 57.145 29.630 0.00 0.00 32.73 3.46
2364 4350 9.855021 CTTCTGTGTTTTTCTTTCTAAAAGGAA 57.145 29.630 0.00 0.00 30.47 3.36
2365 4351 7.973944 GCTTCTGTGTTTTTCTTTCTAAAAGGA 59.026 33.333 0.00 0.00 30.47 3.36
2366 4352 7.044052 CGCTTCTGTGTTTTTCTTTCTAAAAGG 60.044 37.037 0.00 0.00 30.47 3.11
2367 4353 7.484959 ACGCTTCTGTGTTTTTCTTTCTAAAAG 59.515 33.333 0.00 0.00 32.25 2.27
2368 4354 7.309920 ACGCTTCTGTGTTTTTCTTTCTAAAA 58.690 30.769 0.00 0.00 32.25 1.52
2369 4355 6.848451 ACGCTTCTGTGTTTTTCTTTCTAAA 58.152 32.000 0.00 0.00 32.25 1.85
2370 4356 6.431198 ACGCTTCTGTGTTTTTCTTTCTAA 57.569 33.333 0.00 0.00 32.25 2.10
2371 4357 6.128117 ACAACGCTTCTGTGTTTTTCTTTCTA 60.128 34.615 0.00 0.00 43.50 2.10
2372 4358 4.965119 ACGCTTCTGTGTTTTTCTTTCT 57.035 36.364 0.00 0.00 32.25 2.52
2373 4359 4.857037 ACAACGCTTCTGTGTTTTTCTTTC 59.143 37.500 0.00 0.00 43.50 2.62
2374 4360 4.805219 ACAACGCTTCTGTGTTTTTCTTT 58.195 34.783 0.00 0.00 43.50 2.52
2375 4361 4.434713 ACAACGCTTCTGTGTTTTTCTT 57.565 36.364 0.00 0.00 43.50 2.52
2376 4362 4.634443 AGTACAACGCTTCTGTGTTTTTCT 59.366 37.500 0.00 0.00 43.50 2.52
2377 4363 4.905269 AGTACAACGCTTCTGTGTTTTTC 58.095 39.130 0.00 0.00 43.50 2.29
2378 4364 4.957759 AGTACAACGCTTCTGTGTTTTT 57.042 36.364 0.00 0.00 43.50 1.94
2379 4365 6.425577 TTTAGTACAACGCTTCTGTGTTTT 57.574 33.333 0.00 0.00 43.50 2.43
2380 4366 6.482308 AGATTTAGTACAACGCTTCTGTGTTT 59.518 34.615 0.00 0.00 43.50 2.83
2381 4367 5.989777 AGATTTAGTACAACGCTTCTGTGTT 59.010 36.000 0.00 0.00 46.49 3.32
2382 4368 5.539048 AGATTTAGTACAACGCTTCTGTGT 58.461 37.500 0.00 0.00 38.76 3.72
2383 4369 6.073765 ACAAGATTTAGTACAACGCTTCTGTG 60.074 38.462 0.00 0.00 0.00 3.66
2384 4370 5.989777 ACAAGATTTAGTACAACGCTTCTGT 59.010 36.000 0.00 0.00 0.00 3.41
2385 4371 6.145534 TGACAAGATTTAGTACAACGCTTCTG 59.854 38.462 0.00 0.00 0.00 3.02
2386 4372 6.220930 TGACAAGATTTAGTACAACGCTTCT 58.779 36.000 0.00 0.00 0.00 2.85
2387 4373 6.462073 TGACAAGATTTAGTACAACGCTTC 57.538 37.500 0.00 0.00 0.00 3.86
2388 4374 6.704493 TCTTGACAAGATTTAGTACAACGCTT 59.296 34.615 13.99 0.00 31.20 4.68
2389 4375 6.220930 TCTTGACAAGATTTAGTACAACGCT 58.779 36.000 13.99 0.00 31.20 5.07
2390 4376 6.401153 CCTCTTGACAAGATTTAGTACAACGC 60.401 42.308 18.04 0.00 36.82 4.84
2391 4377 6.866770 TCCTCTTGACAAGATTTAGTACAACG 59.133 38.462 18.04 2.50 36.82 4.10
2392 4378 8.603242 TTCCTCTTGACAAGATTTAGTACAAC 57.397 34.615 18.04 0.00 36.82 3.32
2393 4379 9.793259 AATTCCTCTTGACAAGATTTAGTACAA 57.207 29.630 18.04 3.77 36.82 2.41
2394 4380 9.219603 CAATTCCTCTTGACAAGATTTAGTACA 57.780 33.333 18.04 0.00 36.82 2.90
2395 4381 8.669243 CCAATTCCTCTTGACAAGATTTAGTAC 58.331 37.037 18.04 0.00 36.82 2.73
2396 4382 8.383175 ACCAATTCCTCTTGACAAGATTTAGTA 58.617 33.333 18.04 3.10 36.82 1.82
2397 4383 7.234355 ACCAATTCCTCTTGACAAGATTTAGT 58.766 34.615 18.04 7.01 36.82 2.24
2398 4384 7.693969 ACCAATTCCTCTTGACAAGATTTAG 57.306 36.000 18.04 6.76 36.82 1.85
2399 4385 9.753674 ATAACCAATTCCTCTTGACAAGATTTA 57.246 29.630 18.04 6.98 36.82 1.40
2414 4400 6.459923 TGGCAGTTGTAAAATAACCAATTCC 58.540 36.000 0.00 0.00 28.15 3.01
2430 4416 4.679373 ATCTAGACCACTATGGCAGTTG 57.321 45.455 0.00 0.00 42.67 3.16
2480 4466 4.268644 AGCAAAATAGACATCACACGATCG 59.731 41.667 14.88 14.88 0.00 3.69
2495 4481 9.866798 TGCATTATTGTGTGATTAAGCAAAATA 57.133 25.926 0.00 0.00 0.00 1.40
2554 4540 3.440522 GGAAGAACAACTGGTAATCTGGC 59.559 47.826 0.00 0.00 0.00 4.85
2656 4642 5.698741 TCCAATGTCCATACAAGATCACT 57.301 39.130 0.00 0.00 39.58 3.41
2657 4643 6.428159 GGTATCCAATGTCCATACAAGATCAC 59.572 42.308 0.00 0.00 39.58 3.06
2682 4668 3.991773 CAGAAGAACAAATGGCATTGGTG 59.008 43.478 20.55 14.75 34.56 4.17
2693 4679 6.707440 TGCAAGAATTACCAGAAGAACAAA 57.293 33.333 0.00 0.00 0.00 2.83
2731 4717 0.877743 GTTTTGCAGCTCCTGGAGTC 59.122 55.000 23.92 16.06 32.58 3.36
2850 4836 6.127897 CCTGTGAATTGAGAAATCCTTGTACC 60.128 42.308 0.00 0.00 0.00 3.34
2876 4862 6.315714 TGGACATTGGGTTTCTGGTAATAAA 58.684 36.000 0.00 0.00 0.00 1.40
2882 4868 1.780309 TCTGGACATTGGGTTTCTGGT 59.220 47.619 0.00 0.00 0.00 4.00
2926 4912 2.236146 TGTAAGTAGGAGCACCACCATG 59.764 50.000 2.07 0.00 38.94 3.66
2927 4913 2.546899 TGTAAGTAGGAGCACCACCAT 58.453 47.619 2.07 0.00 38.94 3.55
2966 4952 5.640189 TCTACTAGTTTGACTACACCTGC 57.360 43.478 0.00 0.00 0.00 4.85
3211 5200 5.972935 ACACGTTCATCATCACCATAGTAA 58.027 37.500 0.00 0.00 0.00 2.24
3243 5232 5.471257 AGTTTGTCTTATCTCCGAGTGTTC 58.529 41.667 0.00 0.00 0.00 3.18
3302 5291 4.216411 TGTAGAGTATTCCTTGGCCAAC 57.784 45.455 16.05 4.12 0.00 3.77
3368 5357 1.164662 CCAGCAAGATGGATGAGCGG 61.165 60.000 0.00 0.00 43.57 5.52
3403 5392 5.359194 ACAAATCGACATATTCCACTCCT 57.641 39.130 0.00 0.00 0.00 3.69
3442 5431 2.094675 ACCCCTCTCATGCATTTTTCG 58.905 47.619 0.00 0.00 0.00 3.46
3486 5475 7.993101 ACAATCGATTGAAAATGTGATGAGAT 58.007 30.769 37.75 12.16 40.14 2.75
3500 5489 9.816354 TGAGTTTGATTCTATACAATCGATTGA 57.184 29.630 37.75 23.75 40.14 2.57
3510 5499 8.125448 GCATCTTTGGTGAGTTTGATTCTATAC 58.875 37.037 0.00 0.00 0.00 1.47
3544 5533 0.530650 CGTGGATCATCTGAACCCCG 60.531 60.000 4.27 1.04 36.29 5.73
3564 5553 5.367302 TCAATGGCTCCTTTTTCAAAAAGG 58.633 37.500 29.28 29.28 46.28 3.11
3644 5633 6.239345 CCTCTACTAGTCCAACCCAACATATC 60.239 46.154 0.00 0.00 0.00 1.63
3792 5781 6.928492 GTCTAGCAGAGGATCCTTTATTTCTG 59.072 42.308 17.42 17.70 34.84 3.02
3851 5840 1.068264 GCCCTTGCTAACTTGCTCAAC 60.068 52.381 0.00 0.00 33.53 3.18
3870 5859 0.389166 CCTCACGGAGTTCTGTCTGC 60.389 60.000 0.00 0.00 41.61 4.26
3885 5874 3.826157 CTGTTTCCACCATTTAAGCCTCA 59.174 43.478 0.00 0.00 0.00 3.86
4169 6181 4.590222 AGCACCTTCAATGATGAACCTTTT 59.410 37.500 0.00 0.00 40.59 2.27
4219 6231 0.320421 TCGCAGAGCTACACCAAACC 60.320 55.000 0.00 0.00 0.00 3.27
4280 6292 5.697633 GCTCTTGCTTTCATCCAAAATTTCA 59.302 36.000 0.00 0.00 36.03 2.69
4357 6369 2.346803 TCTCTGCGCTTGTATTTCCAC 58.653 47.619 9.73 0.00 0.00 4.02
4391 6403 8.459635 GCATACATCAATCTGCTAATGATCAAT 58.540 33.333 0.00 0.00 31.65 2.57
4421 6433 2.676176 CGATGGTGCATCTTGTCTGAGT 60.676 50.000 0.00 0.00 38.59 3.41
4461 6473 1.224075 CCAGCGATCATTGGTAGCAG 58.776 55.000 4.80 0.00 0.00 4.24
4463 6475 1.510480 GCCCAGCGATCATTGGTAGC 61.510 60.000 10.62 0.00 32.40 3.58
4605 6617 2.049433 CAACAGGCTTGCTGCTGC 60.049 61.111 8.89 8.89 42.39 5.25
4658 6670 8.830915 AAGAGATATTCTTCAGGTCTGAGTTA 57.169 34.615 0.75 0.00 42.54 2.24
4762 6778 3.119388 TGCAGCATGTAAGGAAAGATTGC 60.119 43.478 0.00 0.00 39.31 3.56
4891 6907 4.934602 GCTTACTCAGTTGCATCTCTCTTT 59.065 41.667 0.00 0.00 0.00 2.52
4893 6909 3.768757 AGCTTACTCAGTTGCATCTCTCT 59.231 43.478 5.46 0.00 0.00 3.10
4895 6911 5.867903 ATAGCTTACTCAGTTGCATCTCT 57.132 39.130 0.00 0.00 0.00 3.10
4896 6912 5.814705 ACAATAGCTTACTCAGTTGCATCTC 59.185 40.000 0.00 0.00 0.00 2.75
4898 6914 6.092670 TCAACAATAGCTTACTCAGTTGCATC 59.907 38.462 0.00 0.00 34.56 3.91
4899 6915 5.939883 TCAACAATAGCTTACTCAGTTGCAT 59.060 36.000 0.00 0.00 34.56 3.96
4900 6916 5.179368 GTCAACAATAGCTTACTCAGTTGCA 59.821 40.000 0.00 0.00 34.56 4.08
4901 6917 5.409826 AGTCAACAATAGCTTACTCAGTTGC 59.590 40.000 0.00 0.00 34.56 4.17
4902 6918 8.534333 TTAGTCAACAATAGCTTACTCAGTTG 57.466 34.615 0.00 0.00 35.26 3.16
4903 6919 9.555727 TTTTAGTCAACAATAGCTTACTCAGTT 57.444 29.630 0.00 0.00 0.00 3.16
4904 6920 8.989980 GTTTTAGTCAACAATAGCTTACTCAGT 58.010 33.333 0.00 0.00 0.00 3.41
4905 6921 8.988934 TGTTTTAGTCAACAATAGCTTACTCAG 58.011 33.333 0.00 0.00 33.60 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.