Multiple sequence alignment - TraesCS2B01G160400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G160400 chr2B 100.000 5315 0 0 1 5315 133851609 133846295 0.000000e+00 9816.0
1 TraesCS2B01G160400 chr2B 85.889 1885 241 18 2533 4398 134778758 134780636 0.000000e+00 1984.0
2 TraesCS2B01G160400 chr2B 85.969 392 45 5 1734 2120 134778342 134778728 1.380000e-110 411.0
3 TraesCS2B01G160400 chr2B 78.734 395 43 19 2132 2511 448922440 448922808 5.360000e-55 226.0
4 TraesCS2B01G160400 chr2B 86.667 90 9 2 1416 1503 224586530 224586442 4.380000e-16 97.1
5 TraesCS2B01G160400 chr2D 94.377 1814 92 4 2545 4350 82108496 82106685 0.000000e+00 2776.0
6 TraesCS2B01G160400 chr2D 87.654 1863 126 35 284 2101 82110296 82108493 0.000000e+00 2071.0
7 TraesCS2B01G160400 chr2D 86.490 1436 174 14 2541 3962 83101683 83103112 0.000000e+00 1559.0
8 TraesCS2B01G160400 chr2D 86.042 566 55 13 4774 5315 82106249 82105684 2.130000e-163 586.0
9 TraesCS2B01G160400 chr2D 85.714 399 46 6 4010 4398 83103133 83103530 1.380000e-110 411.0
10 TraesCS2B01G160400 chr2D 85.294 238 27 6 31 263 82113016 82112782 6.880000e-59 239.0
11 TraesCS2B01G160400 chr2D 80.251 319 46 10 2153 2467 590031675 590031370 1.930000e-54 224.0
12 TraesCS2B01G160400 chr2D 87.500 88 10 1 1416 1503 175825110 175825024 3.390000e-17 100.0
13 TraesCS2B01G160400 chr2D 90.541 74 7 0 1384 1457 82109282 82109209 1.220000e-16 99.0
14 TraesCS2B01G160400 chr2D 89.062 64 6 1 1436 1499 612542426 612542488 1.590000e-10 78.7
15 TraesCS2B01G160400 chr2D 95.000 40 2 0 4558 4597 436499282 436499321 4.440000e-06 63.9
16 TraesCS2B01G160400 chr2A 94.267 1814 92 5 2545 4350 82212507 82210698 0.000000e+00 2763.0
17 TraesCS2B01G160400 chr2A 84.876 1891 229 37 2533 4398 83784083 83785941 0.000000e+00 1855.0
18 TraesCS2B01G160400 chr2A 88.875 773 44 17 568 1330 82213852 82213112 0.000000e+00 913.0
19 TraesCS2B01G160400 chr2A 91.050 581 39 9 1528 2101 82213078 82212504 0.000000e+00 773.0
20 TraesCS2B01G160400 chr2A 86.549 565 52 13 4774 5315 82210264 82209701 7.620000e-168 601.0
21 TraesCS2B01G160400 chr2A 86.437 435 38 10 4316 4738 82210691 82210266 1.740000e-124 457.0
22 TraesCS2B01G160400 chr2A 82.952 393 45 13 2132 2511 766963392 766963009 8.530000e-88 335.0
23 TraesCS2B01G160400 chr1D 81.984 383 44 13 2132 2504 108102502 108102135 8.650000e-78 302.0
24 TraesCS2B01G160400 chr1D 82.222 360 52 9 2153 2510 62690503 62690852 3.110000e-77 300.0
25 TraesCS2B01G160400 chr1D 86.000 100 9 2 1 96 161148885 161148787 9.420000e-18 102.0
26 TraesCS2B01G160400 chr7B 81.337 359 49 9 2153 2504 427713533 427713880 5.240000e-70 276.0
27 TraesCS2B01G160400 chr7B 80.168 358 52 11 2163 2511 548113135 548112788 3.180000e-62 250.0
28 TraesCS2B01G160400 chr7B 78.049 369 77 4 2598 2964 642480141 642480507 4.140000e-56 230.0
29 TraesCS2B01G160400 chr7B 96.078 102 4 0 2132 2233 715362316 715362215 3.290000e-37 167.0
30 TraesCS2B01G160400 chr7B 88.000 100 7 2 1 96 186598189 186598091 4.350000e-21 113.0
31 TraesCS2B01G160400 chr3D 82.196 337 40 13 2132 2457 26208599 26208926 6.780000e-69 272.0
32 TraesCS2B01G160400 chr3D 90.278 72 6 1 4535 4605 100464787 100464716 5.670000e-15 93.5
33 TraesCS2B01G160400 chr3D 100.000 28 0 0 4570 4597 308060208 308060181 1.000000e-02 52.8
34 TraesCS2B01G160400 chr5D 80.260 385 47 16 2132 2510 486230248 486230609 4.080000e-66 263.0
35 TraesCS2B01G160400 chr5D 90.123 81 8 0 1419 1499 367983923 367983843 7.280000e-19 106.0
36 TraesCS2B01G160400 chr4D 79.946 369 55 15 2153 2510 421896916 421897276 2.460000e-63 254.0
37 TraesCS2B01G160400 chr4D 89.362 94 5 2 1 90 265380508 265380600 4.350000e-21 113.0
38 TraesCS2B01G160400 chr7D 78.378 370 74 6 2598 2964 578721251 578721617 8.900000e-58 235.0
39 TraesCS2B01G160400 chr7D 90.291 103 7 3 2134 2234 636921086 636921187 1.200000e-26 132.0
40 TraesCS2B01G160400 chr7D 93.023 43 3 0 4570 4612 163564190 163564232 4.440000e-06 63.9
41 TraesCS2B01G160400 chr7D 100.000 28 0 0 4570 4597 7080163 7080190 1.000000e-02 52.8
42 TraesCS2B01G160400 chr4B 78.191 376 59 14 2148 2517 177235616 177235258 8.960000e-53 219.0
43 TraesCS2B01G160400 chr4B 89.130 46 5 0 4570 4615 139759822 139759777 2.070000e-04 58.4
44 TraesCS2B01G160400 chr4A 83.092 207 31 4 2308 2511 609924985 609924780 9.090000e-43 185.0
45 TraesCS2B01G160400 chr1A 82.609 207 35 1 2305 2510 394236677 394236471 1.180000e-41 182.0
46 TraesCS2B01G160400 chr1A 88.372 43 5 0 4570 4612 115940434 115940392 1.000000e-02 52.8
47 TraesCS2B01G160400 chr3B 79.699 266 31 13 2135 2392 771767431 771767181 2.550000e-38 171.0
48 TraesCS2B01G160400 chr3B 97.222 36 1 0 4570 4605 795174184 795174149 1.600000e-05 62.1
49 TraesCS2B01G160400 chr3A 92.079 101 7 1 2128 2227 713982749 713982649 2.000000e-29 141.0
50 TraesCS2B01G160400 chr6D 89.000 100 8 3 2136 2233 265211273 265211175 2.600000e-23 121.0
51 TraesCS2B01G160400 chr6D 86.000 100 9 2 1 96 86794907 86794809 9.420000e-18 102.0
52 TraesCS2B01G160400 chr5A 90.588 85 6 2 1415 1499 611022575 611022657 1.560000e-20 111.0
53 TraesCS2B01G160400 chr5A 88.172 93 6 2 2 90 419246914 419247005 7.280000e-19 106.0
54 TraesCS2B01G160400 chr5A 87.234 94 7 2 1 90 213952323 213952415 9.420000e-18 102.0
55 TraesCS2B01G160400 chr5A 91.071 56 4 1 1444 1499 662382249 662382195 2.050000e-09 75.0
56 TraesCS2B01G160400 chr6A 86.408 103 9 2 2 100 501963083 501962982 2.020000e-19 108.0
57 TraesCS2B01G160400 chr6A 87.273 55 7 0 4558 4612 466097970 466098024 4.440000e-06 63.9
58 TraesCS2B01G160400 chr5B 87.234 94 7 2 1 90 463889618 463889710 9.420000e-18 102.0
59 TraesCS2B01G160400 chr1B 89.474 76 7 1 1430 1505 45195377 45195303 1.580000e-15 95.3
60 TraesCS2B01G160400 chr1B 84.091 88 12 2 1415 1502 486457573 486457658 3.410000e-12 84.2
61 TraesCS2B01G160400 chr1B 84.746 59 9 0 4539 4597 18211137 18211195 5.750000e-05 60.2
62 TraesCS2B01G160400 chr6B 81.720 93 13 4 4526 4614 515582935 515583027 2.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G160400 chr2B 133846295 133851609 5314 True 9816.0 9816 100.0000 1 5315 1 chr2B.!!$R1 5314
1 TraesCS2B01G160400 chr2B 134778342 134780636 2294 False 1197.5 1984 85.9290 1734 4398 2 chr2B.!!$F2 2664
2 TraesCS2B01G160400 chr2D 82105684 82113016 7332 True 1154.2 2776 88.7816 31 5315 5 chr2D.!!$R3 5284
3 TraesCS2B01G160400 chr2D 83101683 83103530 1847 False 985.0 1559 86.1020 2541 4398 2 chr2D.!!$F3 1857
4 TraesCS2B01G160400 chr2A 83784083 83785941 1858 False 1855.0 1855 84.8760 2533 4398 1 chr2A.!!$F1 1865
5 TraesCS2B01G160400 chr2A 82209701 82213852 4151 True 1101.4 2763 89.4356 568 5315 5 chr2A.!!$R2 4747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 2820 0.035439 ATCATGGACGTGTGGGGTTC 60.035 55.0 0.0 0.0 0.00 3.62 F
2015 4553 0.031449 GCTCTAGCCTCCATCACGTC 59.969 60.0 0.0 0.0 34.31 4.34 F
2520 5061 0.035056 GCCCCACTCTGTATGTTGCT 60.035 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2255 4796 0.179215 CGCAGACCTCATTTCAACGC 60.179 55.0 0.00 0.0 0.0 4.84 R
3842 6396 1.109323 AACCAGCTGCCCACTCAAAC 61.109 55.0 8.66 0.0 0.0 2.93 R
4479 7100 0.908198 GAGAGAGGCAATGTGGAGGT 59.092 55.0 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.474410 CGCTTAACCTTGGAGTCCTT 57.526 50.000 11.33 0.00 0.00 3.36
20 21 2.779506 CGCTTAACCTTGGAGTCCTTT 58.220 47.619 11.33 1.21 0.00 3.11
21 22 2.742589 CGCTTAACCTTGGAGTCCTTTC 59.257 50.000 11.33 0.00 0.00 2.62
22 23 3.082548 GCTTAACCTTGGAGTCCTTTCC 58.917 50.000 11.33 0.00 37.77 3.13
23 24 3.335579 CTTAACCTTGGAGTCCTTTCCG 58.664 50.000 11.33 0.00 40.27 4.30
24 25 1.430992 AACCTTGGAGTCCTTTCCGA 58.569 50.000 11.33 0.00 40.27 4.55
25 26 1.430992 ACCTTGGAGTCCTTTCCGAA 58.569 50.000 11.33 0.00 40.27 4.30
26 27 1.985895 ACCTTGGAGTCCTTTCCGAAT 59.014 47.619 11.33 0.00 40.27 3.34
27 28 2.290323 ACCTTGGAGTCCTTTCCGAATG 60.290 50.000 11.33 0.00 40.27 2.67
28 29 1.740025 CTTGGAGTCCTTTCCGAATGC 59.260 52.381 11.33 0.00 40.27 3.56
29 30 0.391130 TGGAGTCCTTTCCGAATGCG 60.391 55.000 11.33 0.00 40.27 4.73
42 43 0.453390 GAATGCGGCTCCCAGAAAAG 59.547 55.000 0.00 0.00 0.00 2.27
46 47 1.308783 GCGGCTCCCAGAAAAGAAGG 61.309 60.000 0.00 0.00 0.00 3.46
51 52 3.834813 GGCTCCCAGAAAAGAAGGAATTT 59.165 43.478 0.00 0.00 0.00 1.82
52 53 4.081972 GGCTCCCAGAAAAGAAGGAATTTC 60.082 45.833 0.00 0.00 36.11 2.17
93 98 5.477291 TCATCCCTATTAAACTAGGCTCTCG 59.523 44.000 0.00 0.00 37.53 4.04
95 100 3.321111 CCCTATTAAACTAGGCTCTCGCA 59.679 47.826 0.00 0.00 37.53 5.10
101 106 1.551452 ACTAGGCTCTCGCAGAAAGT 58.449 50.000 0.00 0.00 38.10 2.66
107 112 2.360801 GGCTCTCGCAGAAAGTCTATCT 59.639 50.000 0.00 0.00 38.10 1.98
134 139 8.768501 ACTTATGTATAGATGAGAGGTGACAA 57.231 34.615 8.45 0.00 0.00 3.18
136 141 8.768501 TTATGTATAGATGAGAGGTGACAACT 57.231 34.615 0.00 0.00 0.00 3.16
138 143 6.187682 TGTATAGATGAGAGGTGACAACTGA 58.812 40.000 0.00 0.00 0.00 3.41
167 172 3.673746 ACACACAATCGTCAAACACAG 57.326 42.857 0.00 0.00 0.00 3.66
175 180 0.512952 CGTCAAACACAGCTAGCACC 59.487 55.000 18.83 0.00 0.00 5.01
185 190 4.827284 ACACAGCTAGCACCTTTTATGTTT 59.173 37.500 18.83 0.00 0.00 2.83
192 197 8.462016 AGCTAGCACCTTTTATGTTTTATTCAG 58.538 33.333 18.83 0.00 0.00 3.02
197 202 9.508567 GCACCTTTTATGTTTTATTCAGATCTC 57.491 33.333 0.00 0.00 0.00 2.75
234 239 3.973973 TCCTTCCTTCTTCTTCCTGTTCA 59.026 43.478 0.00 0.00 0.00 3.18
240 245 3.107642 TCTTCTTCCTGTTCAACGACC 57.892 47.619 0.00 0.00 0.00 4.79
243 248 0.878523 CTTCCTGTTCAACGACCGCA 60.879 55.000 0.00 0.00 0.00 5.69
247 252 0.655733 CTGTTCAACGACCGCAAACT 59.344 50.000 0.00 0.00 0.00 2.66
280 285 3.730761 CGACAAGCAGTGCCTGGC 61.731 66.667 17.77 14.05 31.21 4.85
281 286 3.730761 GACAAGCAGTGCCTGGCG 61.731 66.667 17.77 0.37 34.54 5.69
282 287 4.254709 ACAAGCAGTGCCTGGCGA 62.255 61.111 17.77 0.00 34.54 5.54
289 2759 0.811616 CAGTGCCTGGCGATAAGGTC 60.812 60.000 14.98 0.00 37.13 3.85
335 2805 3.846180 GCCATGCGGGTTCATCAT 58.154 55.556 0.00 0.00 39.65 2.45
336 2806 1.361271 GCCATGCGGGTTCATCATG 59.639 57.895 0.00 0.00 39.65 3.07
338 2808 3.099002 CATGCGGGTTCATCATGGA 57.901 52.632 0.00 0.00 35.27 3.41
339 2809 0.664761 CATGCGGGTTCATCATGGAC 59.335 55.000 0.00 0.00 35.27 4.02
346 2816 1.086696 GTTCATCATGGACGTGTGGG 58.913 55.000 0.00 0.00 0.00 4.61
349 2819 0.322456 CATCATGGACGTGTGGGGTT 60.322 55.000 0.00 0.00 0.00 4.11
350 2820 0.035439 ATCATGGACGTGTGGGGTTC 60.035 55.000 0.00 0.00 0.00 3.62
352 2822 2.150719 ATGGACGTGTGGGGTTCCA 61.151 57.895 0.00 0.00 41.58 3.53
376 2846 1.682854 CTCCAAAAGAACTTGCTGGCA 59.317 47.619 9.65 0.00 0.00 4.92
394 2864 0.877649 CATGTCTTGCCTATCGCGCT 60.878 55.000 5.56 0.00 42.08 5.92
412 2883 0.249657 CTAGGCTCCTCGGCAACATC 60.250 60.000 0.00 0.00 41.46 3.06
419 2890 1.421485 CTCGGCAACATCGTCTTGC 59.579 57.895 6.07 6.07 42.84 4.01
422 2893 1.154413 GGCAACATCGTCTTGCGTG 60.154 57.895 7.88 0.00 44.24 5.34
425 2896 1.596752 AACATCGTCTTGCGTGCCA 60.597 52.632 0.00 0.00 42.13 4.92
426 2897 1.841663 AACATCGTCTTGCGTGCCAC 61.842 55.000 0.00 0.00 42.13 5.01
427 2898 3.112075 ATCGTCTTGCGTGCCACG 61.112 61.111 13.95 13.95 45.88 4.94
441 2912 2.425592 CACGCTCAGTGTTGGGGA 59.574 61.111 0.00 0.00 45.51 4.81
445 2916 2.102420 CACGCTCAGTGTTGGGGATATA 59.898 50.000 0.00 0.00 45.51 0.86
458 2929 5.147330 TGGGGATATATGATGACGTGTTC 57.853 43.478 0.00 0.00 0.00 3.18
459 2930 4.591072 TGGGGATATATGATGACGTGTTCA 59.409 41.667 0.00 0.00 39.11 3.18
464 2935 6.646653 GGATATATGATGACGTGTTCATGTGT 59.353 38.462 16.34 10.19 45.67 3.72
467 2938 3.462021 TGATGACGTGTTCATGTGTGAA 58.538 40.909 0.00 0.00 45.67 3.18
511 2982 6.954852 CACAGTTTTGTTTGTGCAAAGTAATG 59.045 34.615 0.00 0.00 39.20 1.90
512 2983 6.648725 ACAGTTTTGTTTGTGCAAAGTAATGT 59.351 30.769 0.00 0.00 39.20 2.71
522 2993 6.004574 TGTGCAAAGTAATGTACATGGGTAA 58.995 36.000 9.63 0.00 40.33 2.85
524 2995 7.177568 TGTGCAAAGTAATGTACATGGGTAATT 59.822 33.333 9.63 1.06 40.33 1.40
548 3019 4.569162 CGATTACGGTGGAAATGTGTACAT 59.431 41.667 0.00 0.00 35.44 2.29
555 3026 3.078097 TGGAAATGTGTACATGGTTCCG 58.922 45.455 20.54 0.00 42.22 4.30
556 3027 2.422127 GGAAATGTGTACATGGTTCCGG 59.578 50.000 14.81 0.00 35.06 5.14
611 3082 3.443045 CACGTGGGGGCAATGCTC 61.443 66.667 7.95 0.00 0.00 4.26
660 3135 2.244000 GTCATGGTGACACCGTTGG 58.756 57.895 17.05 7.19 46.22 3.77
695 3170 7.911205 ACGTTCATCGAGAAACAAACAAAAATA 59.089 29.630 11.79 0.00 42.86 1.40
820 3296 6.569127 TTATTTTGGCCCTCAGATAGTGTA 57.431 37.500 0.00 0.00 0.00 2.90
872 3354 9.480053 ACAAAATTGTGATAAGATTGGTGAAAG 57.520 29.630 1.62 0.00 40.49 2.62
873 3355 8.928733 CAAAATTGTGATAAGATTGGTGAAAGG 58.071 33.333 0.00 0.00 0.00 3.11
874 3356 5.643379 TTGTGATAAGATTGGTGAAAGGC 57.357 39.130 0.00 0.00 0.00 4.35
933 3415 3.269381 TCTCCATGGATGCCCTTAAAAGT 59.731 43.478 16.63 0.00 0.00 2.66
985 3467 3.871594 GCTCACAAGTCACAACTAACACT 59.128 43.478 0.00 0.00 33.48 3.55
995 3477 6.258727 AGTCACAACTAACACTGAGTTCATTG 59.741 38.462 10.45 10.45 41.64 2.82
999 3481 4.708177 ACTAACACTGAGTTCATTGCAGT 58.292 39.130 0.00 0.00 43.16 4.40
1044 3526 1.156645 CGGCAATCCTACTCAGCAGC 61.157 60.000 0.00 0.00 0.00 5.25
1156 3647 2.803030 AGCTACACCGACCTCTAGAA 57.197 50.000 0.00 0.00 0.00 2.10
1161 3652 4.498345 GCTACACCGACCTCTAGAATTGAG 60.498 50.000 0.00 0.00 0.00 3.02
1175 3666 3.499918 AGAATTGAGCACGAAACAAGAGG 59.500 43.478 0.00 0.00 0.00 3.69
1267 3758 1.077805 TGGGGCGACTACTTCCTCA 59.922 57.895 0.00 0.00 0.00 3.86
1268 3759 0.970937 TGGGGCGACTACTTCCTCAG 60.971 60.000 0.00 0.00 0.00 3.35
1297 3788 3.417101 CCAAAACCACTGCAGGTATACA 58.583 45.455 19.93 0.00 42.25 2.29
1338 3831 9.474313 ACATATAATTTGTGCTTTCCTCCTAAA 57.526 29.630 0.00 0.00 0.00 1.85
1356 3849 5.132144 TCCTAAACCATACTCCCTCCATTTC 59.868 44.000 0.00 0.00 0.00 2.17
1375 3868 7.284261 TCCATTTCCAAATATATGACGCTTTGA 59.716 33.333 0.00 0.00 31.76 2.69
1412 3905 9.305925 CATAAAATTTGTGCTTTCCTCCTAATC 57.694 33.333 0.00 0.00 0.00 1.75
1435 3928 8.757307 ATCCATACTCCCTCCATTTCTAAATA 57.243 34.615 0.00 0.00 0.00 1.40
1436 3929 8.757307 TCCATACTCCCTCCATTTCTAAATAT 57.243 34.615 0.00 0.00 0.00 1.28
1437 3930 9.852784 TCCATACTCCCTCCATTTCTAAATATA 57.147 33.333 0.00 0.00 0.00 0.86
1442 3935 8.314751 ACTCCCTCCATTTCTAAATATATGACG 58.685 37.037 0.00 0.00 0.00 4.35
1443 3936 8.202461 TCCCTCCATTTCTAAATATATGACGT 57.798 34.615 0.00 0.00 0.00 4.34
1444 3937 8.656806 TCCCTCCATTTCTAAATATATGACGTT 58.343 33.333 0.00 0.00 0.00 3.99
1445 3938 9.284968 CCCTCCATTTCTAAATATATGACGTTT 57.715 33.333 0.00 0.00 0.00 3.60
1499 3992 1.073098 ATTTGGGAACGGAGGGAGTT 58.927 50.000 0.00 0.00 34.07 3.01
1504 3997 2.645797 TGGGAACGGAGGGAGTTATTTT 59.354 45.455 0.00 0.00 31.14 1.82
1634 4164 1.669265 TGGCGTCGTGTCTAGTAGATG 59.331 52.381 2.51 0.00 0.00 2.90
1729 4261 5.824904 ATTCCTGAAAAATCTGATCCACG 57.175 39.130 0.00 0.00 0.00 4.94
1765 4303 3.502211 AGTATGCTTGGTTCCTTTCGTTG 59.498 43.478 0.00 0.00 0.00 4.10
1874 4412 4.863491 ACATCAACATGTTGTTTGAGAGC 58.137 39.130 31.94 0.00 40.66 4.09
1904 4442 3.365969 GCACCGTGGAAAGAATAACCTTG 60.366 47.826 0.00 0.00 0.00 3.61
1993 4531 8.147642 AGTCAAATTATCGAGGATGAATTCAC 57.852 34.615 11.07 4.95 0.00 3.18
2015 4553 0.031449 GCTCTAGCCTCCATCACGTC 59.969 60.000 0.00 0.00 34.31 4.34
2048 4586 0.179179 GCTTGCTTCGAGAACATGGC 60.179 55.000 0.00 0.00 0.00 4.40
2057 4595 1.339631 CGAGAACATGGCCTTTGGGTA 60.340 52.381 3.32 0.00 34.45 3.69
2069 4607 4.349930 GGCCTTTGGGTATCTTCAGGTATA 59.650 45.833 0.00 0.00 34.45 1.47
2120 4661 5.587388 ACAAGGCATGAATATCCACAAAG 57.413 39.130 0.00 0.00 0.00 2.77
2121 4662 4.403432 ACAAGGCATGAATATCCACAAAGG 59.597 41.667 0.00 0.00 39.47 3.11
2131 4672 1.691196 TCCACAAAGGAGCCACAAAG 58.309 50.000 0.00 0.00 43.07 2.77
2132 4673 0.675633 CCACAAAGGAGCCACAAAGG 59.324 55.000 0.00 0.00 41.22 3.11
2133 4674 1.691196 CACAAAGGAGCCACAAAGGA 58.309 50.000 0.00 0.00 41.22 3.36
2134 4675 1.610522 CACAAAGGAGCCACAAAGGAG 59.389 52.381 0.00 0.00 41.22 3.69
2152 4693 3.339253 GAGGCCTCCATTTGCAAAATT 57.661 42.857 23.19 0.00 0.00 1.82
2153 4694 3.264947 GAGGCCTCCATTTGCAAAATTC 58.735 45.455 23.19 2.69 0.00 2.17
2154 4695 2.638855 AGGCCTCCATTTGCAAAATTCA 59.361 40.909 17.19 0.00 0.00 2.57
2155 4696 3.072768 AGGCCTCCATTTGCAAAATTCAA 59.927 39.130 17.19 0.00 0.00 2.69
2156 4697 3.819902 GGCCTCCATTTGCAAAATTCAAA 59.180 39.130 17.19 0.00 37.75 2.69
2157 4698 4.277921 GGCCTCCATTTGCAAAATTCAAAA 59.722 37.500 17.19 0.00 37.04 2.44
2158 4699 5.047872 GGCCTCCATTTGCAAAATTCAAAAT 60.048 36.000 17.19 0.00 37.04 1.82
2159 4700 6.448852 GCCTCCATTTGCAAAATTCAAAATT 58.551 32.000 17.19 0.00 37.04 1.82
2160 4701 6.583427 GCCTCCATTTGCAAAATTCAAAATTC 59.417 34.615 17.19 0.00 37.04 2.17
2161 4702 7.649973 CCTCCATTTGCAAAATTCAAAATTCA 58.350 30.769 17.19 0.00 37.04 2.57
2162 4703 8.301002 CCTCCATTTGCAAAATTCAAAATTCAT 58.699 29.630 17.19 0.00 37.04 2.57
2218 4759 6.841601 ACAAATATACATGGAGGCATAGTGT 58.158 36.000 0.00 0.00 0.00 3.55
2219 4760 7.973402 ACAAATATACATGGAGGCATAGTGTA 58.027 34.615 0.00 0.00 0.00 2.90
2220 4761 7.878127 ACAAATATACATGGAGGCATAGTGTAC 59.122 37.037 0.00 0.00 0.00 2.90
2221 4762 7.553504 AATATACATGGAGGCATAGTGTACA 57.446 36.000 0.00 0.00 0.00 2.90
2222 4763 7.739995 ATATACATGGAGGCATAGTGTACAT 57.260 36.000 0.00 0.00 0.00 2.29
2223 4764 4.077300 ACATGGAGGCATAGTGTACATG 57.923 45.455 0.00 0.00 39.88 3.21
2224 4765 3.455910 ACATGGAGGCATAGTGTACATGT 59.544 43.478 2.69 2.69 41.61 3.21
2225 4766 3.541996 TGGAGGCATAGTGTACATGTG 57.458 47.619 9.11 0.00 0.00 3.21
2226 4767 2.837591 TGGAGGCATAGTGTACATGTGT 59.162 45.455 9.11 0.00 0.00 3.72
2227 4768 3.198068 GGAGGCATAGTGTACATGTGTG 58.802 50.000 9.11 0.00 0.00 3.82
2228 4769 3.369471 GGAGGCATAGTGTACATGTGTGT 60.369 47.826 9.11 0.00 42.39 3.72
2229 4770 4.142026 GGAGGCATAGTGTACATGTGTGTA 60.142 45.833 9.11 0.00 39.77 2.90
2230 4771 5.414789 AGGCATAGTGTACATGTGTGTAA 57.585 39.130 9.11 0.00 42.18 2.41
2231 4772 5.800296 AGGCATAGTGTACATGTGTGTAAA 58.200 37.500 9.11 0.00 42.18 2.01
2232 4773 6.414732 AGGCATAGTGTACATGTGTGTAAAT 58.585 36.000 9.11 0.00 42.18 1.40
2233 4774 6.538742 AGGCATAGTGTACATGTGTGTAAATC 59.461 38.462 9.11 0.00 42.18 2.17
2234 4775 6.315144 GGCATAGTGTACATGTGTGTAAATCA 59.685 38.462 9.11 0.00 42.18 2.57
2235 4776 7.180079 GCATAGTGTACATGTGTGTAAATCAC 58.820 38.462 9.11 5.17 42.18 3.06
2236 4777 7.064609 GCATAGTGTACATGTGTGTAAATCACT 59.935 37.037 9.11 11.35 46.27 3.41
2237 4778 9.581099 CATAGTGTACATGTGTGTAAATCACTA 57.419 33.333 9.11 14.46 43.91 2.74
2239 4780 8.896320 AGTGTACATGTGTGTAAATCACTAAA 57.104 30.769 9.11 0.00 46.27 1.85
2240 4781 9.502091 AGTGTACATGTGTGTAAATCACTAAAT 57.498 29.630 9.11 0.00 46.27 1.40
2245 4786 8.015087 ACATGTGTGTAAATCACTAAATTGTCG 58.985 33.333 0.00 0.00 46.27 4.35
2246 4787 7.716768 TGTGTGTAAATCACTAAATTGTCGA 57.283 32.000 0.00 0.00 46.27 4.20
2247 4788 7.792925 TGTGTGTAAATCACTAAATTGTCGAG 58.207 34.615 0.00 0.00 46.27 4.04
2248 4789 7.654116 TGTGTGTAAATCACTAAATTGTCGAGA 59.346 33.333 0.00 0.00 46.27 4.04
2249 4790 8.656849 GTGTGTAAATCACTAAATTGTCGAGAT 58.343 33.333 0.00 0.00 46.27 2.75
2250 4791 8.655970 TGTGTAAATCACTAAATTGTCGAGATG 58.344 33.333 0.00 0.00 46.27 2.90
2251 4792 8.869897 GTGTAAATCACTAAATTGTCGAGATGA 58.130 33.333 0.00 0.00 43.13 2.92
2252 4793 9.430623 TGTAAATCACTAAATTGTCGAGATGAA 57.569 29.630 0.00 0.00 0.00 2.57
2255 4796 9.778993 AAATCACTAAATTGTCGAGATGAAATG 57.221 29.630 0.00 0.00 0.00 2.32
2256 4797 6.775088 TCACTAAATTGTCGAGATGAAATGC 58.225 36.000 0.00 0.00 0.00 3.56
2257 4798 5.674148 CACTAAATTGTCGAGATGAAATGCG 59.326 40.000 0.00 0.00 0.00 4.73
2258 4799 4.685169 AAATTGTCGAGATGAAATGCGT 57.315 36.364 0.00 0.00 0.00 5.24
2259 4800 4.685169 AATTGTCGAGATGAAATGCGTT 57.315 36.364 0.00 0.00 0.00 4.84
2260 4801 3.454042 TTGTCGAGATGAAATGCGTTG 57.546 42.857 0.00 0.00 0.00 4.10
2261 4802 2.682836 TGTCGAGATGAAATGCGTTGA 58.317 42.857 0.00 0.00 0.00 3.18
2262 4803 3.063485 TGTCGAGATGAAATGCGTTGAA 58.937 40.909 0.00 0.00 0.00 2.69
2263 4804 3.496507 TGTCGAGATGAAATGCGTTGAAA 59.503 39.130 0.00 0.00 0.00 2.69
2264 4805 4.154015 TGTCGAGATGAAATGCGTTGAAAT 59.846 37.500 0.00 0.00 0.00 2.17
2265 4806 4.493350 GTCGAGATGAAATGCGTTGAAATG 59.507 41.667 0.00 0.00 0.00 2.32
2266 4807 4.391523 TCGAGATGAAATGCGTTGAAATGA 59.608 37.500 0.00 0.00 0.00 2.57
2267 4808 4.727179 CGAGATGAAATGCGTTGAAATGAG 59.273 41.667 0.00 0.00 0.00 2.90
2268 4809 4.990257 AGATGAAATGCGTTGAAATGAGG 58.010 39.130 0.00 0.00 0.00 3.86
2269 4810 4.460382 AGATGAAATGCGTTGAAATGAGGT 59.540 37.500 0.00 0.00 0.00 3.85
2270 4811 4.159377 TGAAATGCGTTGAAATGAGGTC 57.841 40.909 0.00 0.00 0.00 3.85
2271 4812 3.820467 TGAAATGCGTTGAAATGAGGTCT 59.180 39.130 0.00 0.00 0.00 3.85
2272 4813 3.837213 AATGCGTTGAAATGAGGTCTG 57.163 42.857 0.00 0.00 0.00 3.51
2273 4814 0.874390 TGCGTTGAAATGAGGTCTGC 59.126 50.000 0.00 0.00 0.00 4.26
2274 4815 0.179215 GCGTTGAAATGAGGTCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
2275 4816 0.179215 CGTTGAAATGAGGTCTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
2276 4817 0.874390 GTTGAAATGAGGTCTGCGCA 59.126 50.000 10.98 10.98 0.00 6.09
2277 4818 1.266718 GTTGAAATGAGGTCTGCGCAA 59.733 47.619 13.05 0.00 0.00 4.85
2278 4819 1.603456 TGAAATGAGGTCTGCGCAAA 58.397 45.000 13.05 0.00 0.00 3.68
2279 4820 1.952990 TGAAATGAGGTCTGCGCAAAA 59.047 42.857 13.05 0.00 0.00 2.44
2280 4821 2.360483 TGAAATGAGGTCTGCGCAAAAA 59.640 40.909 13.05 0.00 0.00 1.94
2300 4841 4.607293 AAAATCTGGGGCTTTTCAGAAC 57.393 40.909 0.00 0.00 42.40 3.01
2301 4842 2.978156 ATCTGGGGCTTTTCAGAACA 57.022 45.000 0.00 0.00 42.40 3.18
2302 4843 2.978156 TCTGGGGCTTTTCAGAACAT 57.022 45.000 0.00 0.00 37.11 2.71
2303 4844 2.517959 TCTGGGGCTTTTCAGAACATG 58.482 47.619 0.00 0.00 37.11 3.21
2304 4845 2.108075 TCTGGGGCTTTTCAGAACATGA 59.892 45.455 0.00 0.00 37.11 3.07
2305 4846 3.094572 CTGGGGCTTTTCAGAACATGAT 58.905 45.455 0.00 0.00 37.89 2.45
2306 4847 4.018506 TCTGGGGCTTTTCAGAACATGATA 60.019 41.667 0.00 0.00 37.89 2.15
2307 4848 4.016444 TGGGGCTTTTCAGAACATGATAC 58.984 43.478 0.00 0.00 37.89 2.24
2308 4849 4.263905 TGGGGCTTTTCAGAACATGATACT 60.264 41.667 0.00 0.00 37.89 2.12
2309 4850 5.045213 TGGGGCTTTTCAGAACATGATACTA 60.045 40.000 0.00 0.00 37.89 1.82
2310 4851 6.064717 GGGGCTTTTCAGAACATGATACTAT 58.935 40.000 0.00 0.00 37.89 2.12
2311 4852 6.547510 GGGGCTTTTCAGAACATGATACTATT 59.452 38.462 0.00 0.00 37.89 1.73
2312 4853 7.255277 GGGGCTTTTCAGAACATGATACTATTC 60.255 40.741 0.00 0.00 37.89 1.75
2313 4854 7.283127 GGGCTTTTCAGAACATGATACTATTCA 59.717 37.037 0.00 0.00 37.89 2.57
2314 4855 8.844244 GGCTTTTCAGAACATGATACTATTCAT 58.156 33.333 0.00 0.00 37.89 2.57
2315 4856 9.875675 GCTTTTCAGAACATGATACTATTCATC 57.124 33.333 0.00 0.00 37.89 2.92
2318 4859 9.770097 TTTCAGAACATGATACTATTCATCCTC 57.230 33.333 0.00 0.00 37.89 3.71
2319 4860 8.482852 TCAGAACATGATACTATTCATCCTCA 57.517 34.615 0.00 0.00 34.09 3.86
2320 4861 8.927411 TCAGAACATGATACTATTCATCCTCAA 58.073 33.333 0.00 0.00 34.09 3.02
2321 4862 9.205719 CAGAACATGATACTATTCATCCTCAAG 57.794 37.037 0.00 0.00 34.09 3.02
2322 4863 8.932610 AGAACATGATACTATTCATCCTCAAGT 58.067 33.333 0.00 0.00 34.09 3.16
2323 4864 9.202273 GAACATGATACTATTCATCCTCAAGTC 57.798 37.037 0.00 0.00 34.09 3.01
2324 4865 7.675062 ACATGATACTATTCATCCTCAAGTCC 58.325 38.462 0.00 0.00 34.09 3.85
2325 4866 7.290948 ACATGATACTATTCATCCTCAAGTCCA 59.709 37.037 0.00 0.00 34.09 4.02
2326 4867 7.675161 TGATACTATTCATCCTCAAGTCCAA 57.325 36.000 0.00 0.00 0.00 3.53
2327 4868 7.730084 TGATACTATTCATCCTCAAGTCCAAG 58.270 38.462 0.00 0.00 0.00 3.61
2328 4869 7.565029 TGATACTATTCATCCTCAAGTCCAAGA 59.435 37.037 0.00 0.00 0.00 3.02
2329 4870 6.627087 ACTATTCATCCTCAAGTCCAAGAA 57.373 37.500 0.00 0.00 0.00 2.52
2330 4871 7.205515 ACTATTCATCCTCAAGTCCAAGAAT 57.794 36.000 0.00 0.00 0.00 2.40
2331 4872 7.637511 ACTATTCATCCTCAAGTCCAAGAATT 58.362 34.615 0.00 0.00 0.00 2.17
2332 4873 8.112183 ACTATTCATCCTCAAGTCCAAGAATTT 58.888 33.333 0.00 0.00 0.00 1.82
2333 4874 6.579666 TTCATCCTCAAGTCCAAGAATTTG 57.420 37.500 0.00 0.00 0.00 2.32
2334 4875 5.634118 TCATCCTCAAGTCCAAGAATTTGT 58.366 37.500 0.00 0.00 32.21 2.83
2335 4876 6.070656 TCATCCTCAAGTCCAAGAATTTGTT 58.929 36.000 0.00 0.00 32.21 2.83
2336 4877 6.550854 TCATCCTCAAGTCCAAGAATTTGTTT 59.449 34.615 0.00 0.00 32.21 2.83
2337 4878 6.790232 TCCTCAAGTCCAAGAATTTGTTTT 57.210 33.333 0.00 0.00 32.21 2.43
2338 4879 7.181569 TCCTCAAGTCCAAGAATTTGTTTTT 57.818 32.000 0.00 0.00 32.21 1.94
2386 4927 8.974408 GGTATTTCAACCTGAATTTTTACACAC 58.026 33.333 0.00 0.00 36.11 3.82
2387 4928 9.522804 GTATTTCAACCTGAATTTTTACACACA 57.477 29.630 0.00 0.00 36.11 3.72
2404 4945 9.980780 TTTACACACATATACATTTCATCGTTG 57.019 29.630 0.00 0.00 0.00 4.10
2405 4946 7.609760 ACACACATATACATTTCATCGTTGT 57.390 32.000 0.00 0.00 0.00 3.32
2406 4947 8.710835 ACACACATATACATTTCATCGTTGTA 57.289 30.769 0.00 0.00 0.00 2.41
2407 4948 9.325198 ACACACATATACATTTCATCGTTGTAT 57.675 29.630 0.00 0.00 39.31 2.29
2414 4955 6.985188 ACATTTCATCGTTGTATACTTGCT 57.015 33.333 4.17 0.00 0.00 3.91
2415 4956 7.377766 ACATTTCATCGTTGTATACTTGCTT 57.622 32.000 4.17 0.00 0.00 3.91
2416 4957 7.816640 ACATTTCATCGTTGTATACTTGCTTT 58.183 30.769 4.17 0.00 0.00 3.51
2417 4958 8.296713 ACATTTCATCGTTGTATACTTGCTTTT 58.703 29.630 4.17 0.00 0.00 2.27
2418 4959 9.128107 CATTTCATCGTTGTATACTTGCTTTTT 57.872 29.630 4.17 0.00 0.00 1.94
2440 4981 5.699097 TTTCCAGATTTTACTGAAACCGG 57.301 39.130 0.00 0.00 39.94 5.28
2441 4982 4.627284 TCCAGATTTTACTGAAACCGGA 57.373 40.909 9.46 0.00 39.94 5.14
2442 4983 4.975631 TCCAGATTTTACTGAAACCGGAA 58.024 39.130 9.46 0.00 39.94 4.30
2443 4984 5.378332 TCCAGATTTTACTGAAACCGGAAA 58.622 37.500 9.46 0.00 39.94 3.13
2444 4985 5.472137 TCCAGATTTTACTGAAACCGGAAAG 59.528 40.000 9.46 1.76 39.94 2.62
2445 4986 5.472137 CCAGATTTTACTGAAACCGGAAAGA 59.528 40.000 9.46 0.00 39.94 2.52
2446 4987 6.151144 CCAGATTTTACTGAAACCGGAAAGAT 59.849 38.462 9.46 0.00 39.94 2.40
2447 4988 7.309194 CCAGATTTTACTGAAACCGGAAAGATT 60.309 37.037 9.46 0.00 39.94 2.40
2448 4989 7.538678 CAGATTTTACTGAAACCGGAAAGATTG 59.461 37.037 9.46 0.00 39.94 2.67
2449 4990 6.945938 TTTTACTGAAACCGGAAAGATTGA 57.054 33.333 9.46 0.00 0.00 2.57
2450 4991 6.945938 TTTACTGAAACCGGAAAGATTGAA 57.054 33.333 9.46 0.00 0.00 2.69
2451 4992 7.519032 TTTACTGAAACCGGAAAGATTGAAT 57.481 32.000 9.46 0.00 0.00 2.57
2452 4993 7.519032 TTACTGAAACCGGAAAGATTGAATT 57.481 32.000 9.46 0.00 0.00 2.17
2453 4994 6.405278 ACTGAAACCGGAAAGATTGAATTT 57.595 33.333 9.46 0.00 0.00 1.82
2454 4995 6.816136 ACTGAAACCGGAAAGATTGAATTTT 58.184 32.000 9.46 0.00 0.00 1.82
2455 4996 6.701400 ACTGAAACCGGAAAGATTGAATTTTG 59.299 34.615 9.46 0.00 0.00 2.44
2456 4997 6.810911 TGAAACCGGAAAGATTGAATTTTGA 58.189 32.000 9.46 0.00 0.00 2.69
2457 4998 7.441017 TGAAACCGGAAAGATTGAATTTTGAT 58.559 30.769 9.46 0.00 0.00 2.57
2458 4999 7.930865 TGAAACCGGAAAGATTGAATTTTGATT 59.069 29.630 9.46 0.00 0.00 2.57
2459 5000 8.675705 AAACCGGAAAGATTGAATTTTGATTT 57.324 26.923 9.46 0.00 0.00 2.17
2460 5001 8.675705 AACCGGAAAGATTGAATTTTGATTTT 57.324 26.923 9.46 0.00 0.00 1.82
2461 5002 8.675705 ACCGGAAAGATTGAATTTTGATTTTT 57.324 26.923 9.46 0.00 0.00 1.94
2480 5021 5.941555 TTTTTCAAACTTAAAGGGCTCCA 57.058 34.783 0.00 0.00 0.00 3.86
2481 5022 6.493189 TTTTTCAAACTTAAAGGGCTCCAT 57.507 33.333 0.00 0.00 0.00 3.41
2482 5023 5.467035 TTTCAAACTTAAAGGGCTCCATG 57.533 39.130 0.00 0.00 0.00 3.66
2483 5024 3.430453 TCAAACTTAAAGGGCTCCATGG 58.570 45.455 4.97 4.97 0.00 3.66
2484 5025 3.075283 TCAAACTTAAAGGGCTCCATGGA 59.925 43.478 15.27 15.27 0.00 3.41
2485 5026 3.372440 AACTTAAAGGGCTCCATGGAG 57.628 47.619 33.73 33.73 44.56 3.86
2494 5035 3.165606 CTCCATGGAGCTTGGTCAC 57.834 57.895 28.45 0.00 35.31 3.67
2495 5036 0.393537 CTCCATGGAGCTTGGTCACC 60.394 60.000 28.45 0.00 35.31 4.02
2496 5037 1.133181 TCCATGGAGCTTGGTCACCA 61.133 55.000 11.44 0.00 35.64 4.17
2497 5038 0.251297 CCATGGAGCTTGGTCACCAA 60.251 55.000 9.51 9.51 41.69 3.67
2498 5039 1.619654 CATGGAGCTTGGTCACCAAA 58.380 50.000 11.37 0.00 43.44 3.28
2499 5040 1.962807 CATGGAGCTTGGTCACCAAAA 59.037 47.619 11.37 0.00 43.44 2.44
2500 5041 1.398692 TGGAGCTTGGTCACCAAAAC 58.601 50.000 11.37 5.91 43.44 2.43
2501 5042 0.310854 GGAGCTTGGTCACCAAAACG 59.689 55.000 11.37 0.00 43.44 3.60
2502 5043 0.317854 GAGCTTGGTCACCAAAACGC 60.318 55.000 11.37 10.96 43.44 4.84
2503 5044 1.299850 GCTTGGTCACCAAAACGCC 60.300 57.895 11.37 0.00 43.44 5.68
2504 5045 1.362355 CTTGGTCACCAAAACGCCC 59.638 57.895 11.37 0.00 43.44 6.13
2505 5046 2.082629 CTTGGTCACCAAAACGCCCC 62.083 60.000 11.37 0.00 43.44 5.80
2506 5047 2.519780 GGTCACCAAAACGCCCCA 60.520 61.111 0.00 0.00 0.00 4.96
2507 5048 2.725641 GTCACCAAAACGCCCCAC 59.274 61.111 0.00 0.00 0.00 4.61
2508 5049 1.826487 GTCACCAAAACGCCCCACT 60.826 57.895 0.00 0.00 0.00 4.00
2509 5050 1.527380 TCACCAAAACGCCCCACTC 60.527 57.895 0.00 0.00 0.00 3.51
2510 5051 1.528309 CACCAAAACGCCCCACTCT 60.528 57.895 0.00 0.00 0.00 3.24
2511 5052 1.528309 ACCAAAACGCCCCACTCTG 60.528 57.895 0.00 0.00 0.00 3.35
2512 5053 1.528309 CCAAAACGCCCCACTCTGT 60.528 57.895 0.00 0.00 0.00 3.41
2513 5054 0.250553 CCAAAACGCCCCACTCTGTA 60.251 55.000 0.00 0.00 0.00 2.74
2514 5055 1.613255 CCAAAACGCCCCACTCTGTAT 60.613 52.381 0.00 0.00 0.00 2.29
2515 5056 1.468520 CAAAACGCCCCACTCTGTATG 59.531 52.381 0.00 0.00 0.00 2.39
2516 5057 0.690762 AAACGCCCCACTCTGTATGT 59.309 50.000 0.00 0.00 0.00 2.29
2517 5058 0.690762 AACGCCCCACTCTGTATGTT 59.309 50.000 0.00 0.00 0.00 2.71
2518 5059 0.036388 ACGCCCCACTCTGTATGTTG 60.036 55.000 0.00 0.00 0.00 3.33
2519 5060 1.369091 CGCCCCACTCTGTATGTTGC 61.369 60.000 0.00 0.00 0.00 4.17
2520 5061 0.035056 GCCCCACTCTGTATGTTGCT 60.035 55.000 0.00 0.00 0.00 3.91
2521 5062 1.209504 GCCCCACTCTGTATGTTGCTA 59.790 52.381 0.00 0.00 0.00 3.49
2522 5063 2.906354 CCCCACTCTGTATGTTGCTAC 58.094 52.381 0.00 0.00 0.00 3.58
2523 5064 2.501723 CCCCACTCTGTATGTTGCTACT 59.498 50.000 0.00 0.00 0.00 2.57
2524 5065 3.704566 CCCCACTCTGTATGTTGCTACTA 59.295 47.826 0.00 0.00 0.00 1.82
2525 5066 4.202161 CCCCACTCTGTATGTTGCTACTAG 60.202 50.000 0.00 0.00 0.00 2.57
2526 5067 4.202161 CCCACTCTGTATGTTGCTACTAGG 60.202 50.000 0.00 0.00 0.00 3.02
2527 5068 4.645136 CCACTCTGTATGTTGCTACTAGGA 59.355 45.833 0.00 0.00 0.00 2.94
2528 5069 5.303078 CCACTCTGTATGTTGCTACTAGGAT 59.697 44.000 0.00 0.00 0.00 3.24
2529 5070 6.490381 CCACTCTGTATGTTGCTACTAGGATA 59.510 42.308 0.00 0.00 0.00 2.59
2530 5071 7.014326 CCACTCTGTATGTTGCTACTAGGATAA 59.986 40.741 0.00 0.00 0.00 1.75
2531 5072 8.580720 CACTCTGTATGTTGCTACTAGGATAAT 58.419 37.037 0.00 0.00 0.00 1.28
2539 5080 9.899661 ATGTTGCTACTAGGATAATTAACACAA 57.100 29.630 0.00 0.00 0.00 3.33
2571 5112 4.982241 ACTAGCTATACAATGGCATGGT 57.018 40.909 13.00 13.00 39.48 3.55
2612 5153 6.916440 TCACCAATATTTATCATGCAGATGC 58.084 36.000 0.00 0.00 37.57 3.91
2664 5205 7.041984 CGGAGCTTTAGGAAAGATATTACCAAC 60.042 40.741 3.15 0.00 41.02 3.77
2716 5257 2.766263 ACAGCCCATCTTCTCGTTCATA 59.234 45.455 0.00 0.00 0.00 2.15
2780 5321 5.434408 TCATCTTGAATTGATGAGGGACAG 58.566 41.667 3.47 0.00 43.47 3.51
2809 5350 2.003301 CTCCTTTAGCCGAGCAAGTTC 58.997 52.381 0.00 0.00 0.00 3.01
2811 5352 1.734465 CCTTTAGCCGAGCAAGTTCAG 59.266 52.381 0.00 0.00 0.00 3.02
2893 5434 2.826128 TCTGAGTACAAGCACGAGGAAT 59.174 45.455 0.00 0.00 0.00 3.01
2895 5436 2.271800 GAGTACAAGCACGAGGAATGG 58.728 52.381 0.00 0.00 0.00 3.16
2904 5445 1.134098 CACGAGGAATGGCATAACCCT 60.134 52.381 16.48 15.09 37.83 4.34
3045 5586 9.431887 GAATCAATATAAAATGCATGCCTTCAT 57.568 29.630 16.68 10.92 0.00 2.57
3151 5703 0.682292 TGGTGGCGTGATCTGTACAA 59.318 50.000 0.00 0.00 0.00 2.41
3314 5866 0.830444 ATGATGCCCATGCCACCATC 60.830 55.000 0.00 0.00 36.33 3.51
3546 6100 5.758296 TGAGGATATTTAAAGATGCCACGAC 59.242 40.000 10.30 0.29 0.00 4.34
3585 6139 4.261801 GACACTTACCATGTTGCCTATGT 58.738 43.478 0.00 0.00 0.00 2.29
3655 6209 7.784790 TTTTTAGAGTGTTCGTTTTGTGTTC 57.215 32.000 0.00 0.00 0.00 3.18
3842 6396 3.545703 AGATCCAATAACAAGGGAAGCG 58.454 45.455 0.00 0.00 33.73 4.68
3879 6433 3.018149 GGTTACCCAAATGTCGCCATAA 58.982 45.455 0.00 0.00 0.00 1.90
3925 6479 1.534595 GGATGACATTGCCGCATTCAC 60.535 52.381 0.00 0.00 0.00 3.18
3962 6516 9.936759 TTTATTTTCTTATTTGGCCCAAACTAG 57.063 29.630 11.91 11.59 36.13 2.57
3982 6536 3.222603 AGAACAACTCAACCACCAATCC 58.777 45.455 0.00 0.00 0.00 3.01
3993 6547 0.798776 CACCAATCCGCACTCAAGAC 59.201 55.000 0.00 0.00 0.00 3.01
4061 6618 1.003696 GGGGGATATGGCAAGCTCTAC 59.996 57.143 0.00 0.00 0.00 2.59
4161 6718 7.765695 ATGGAAAACTCTAAATCAAGCTCAA 57.234 32.000 0.00 0.00 0.00 3.02
4212 6769 3.181491 TGCAGCGGATTATTAACTTTGCC 60.181 43.478 0.00 0.00 0.00 4.52
4315 6872 3.075283 TGTGAAACCCATTCCCATGTAGT 59.925 43.478 0.00 0.00 37.22 2.73
4399 7020 3.503363 TGGAGCTTGTGCACTATCTTTTG 59.497 43.478 19.41 0.00 42.74 2.44
4454 7075 4.946784 AGCAATTGTACTTGGAATCGTC 57.053 40.909 7.40 0.00 0.00 4.20
4477 7098 7.357613 CGTCGAATGATATCACATACAGTTGTC 60.358 40.741 7.78 0.00 0.00 3.18
4479 7100 8.846211 TCGAATGATATCACATACAGTTGTCTA 58.154 33.333 7.78 0.00 0.00 2.59
4480 7101 8.906693 CGAATGATATCACATACAGTTGTCTAC 58.093 37.037 7.78 0.00 0.00 2.59
4487 7108 4.021456 CACATACAGTTGTCTACCTCCACA 60.021 45.833 0.00 0.00 0.00 4.17
4518 7143 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4519 7144 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4520 7145 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4523 7148 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4527 7152 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4528 7153 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4530 7155 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4531 7156 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4532 7157 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4533 7158 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
4534 7159 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
4535 7160 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
4536 7161 2.126882 CTCTCTCTCTCTCTCTCCCCA 58.873 57.143 0.00 0.00 0.00 4.96
4537 7162 2.105477 CTCTCTCTCTCTCTCTCCCCAG 59.895 59.091 0.00 0.00 0.00 4.45
4585 7210 6.778108 AGTACAAGTTTGAACTAAAACCACG 58.222 36.000 0.00 0.00 40.26 4.94
4589 7214 6.127842 ACAAGTTTGAACTAAAACCACGACAT 60.128 34.615 0.00 0.00 40.26 3.06
4602 7227 8.480643 AAAACCACGACATTTATTTTTGAACA 57.519 26.923 0.00 0.00 0.00 3.18
4606 7231 7.976734 ACCACGACATTTATTTTTGAACAGAAA 59.023 29.630 0.00 0.00 0.00 2.52
4620 7245 7.891183 TTGAACAGAAAGAGTATTGAGTAGC 57.109 36.000 0.00 0.00 0.00 3.58
4633 7258 9.846248 GAGTATTGAGTAGCATTTCACAAAAAT 57.154 29.630 0.00 0.00 0.00 1.82
4640 7265 3.066380 GCATTTCACAAAAATCGCCCTT 58.934 40.909 0.00 0.00 0.00 3.95
4683 7313 5.469479 CAAAACCCAACTATTAAGTGGCAG 58.531 41.667 0.00 0.00 35.62 4.85
4685 7315 4.650972 ACCCAACTATTAAGTGGCAGAA 57.349 40.909 0.00 0.00 35.62 3.02
4722 7352 4.080015 CACCCCAGTGGAGTATTTTATCCA 60.080 45.833 11.95 0.00 43.34 3.41
4725 7355 5.399038 CCCCAGTGGAGTATTTTATCCATGT 60.399 44.000 11.95 0.00 46.87 3.21
4729 7359 7.275183 CAGTGGAGTATTTTATCCATGTCTGA 58.725 38.462 0.00 0.00 46.87 3.27
4744 7374 7.602753 TCCATGTCTGATATACGTAATTGAGG 58.397 38.462 0.00 0.00 0.00 3.86
4745 7375 7.450323 TCCATGTCTGATATACGTAATTGAGGA 59.550 37.037 0.00 0.00 0.00 3.71
4746 7376 7.757173 CCATGTCTGATATACGTAATTGAGGAG 59.243 40.741 0.00 0.00 0.00 3.69
4747 7377 6.678878 TGTCTGATATACGTAATTGAGGAGC 58.321 40.000 0.00 0.00 0.00 4.70
4748 7378 6.264518 TGTCTGATATACGTAATTGAGGAGCA 59.735 38.462 0.00 0.00 0.00 4.26
4749 7379 7.039714 TGTCTGATATACGTAATTGAGGAGCAT 60.040 37.037 0.00 0.00 0.00 3.79
4750 7380 8.459635 GTCTGATATACGTAATTGAGGAGCATA 58.540 37.037 0.00 0.00 0.00 3.14
4751 7381 8.678199 TCTGATATACGTAATTGAGGAGCATAG 58.322 37.037 0.00 0.00 0.00 2.23
4752 7382 7.258441 TGATATACGTAATTGAGGAGCATAGC 58.742 38.462 0.00 0.00 0.00 2.97
4753 7383 5.730296 ATACGTAATTGAGGAGCATAGCT 57.270 39.130 0.00 0.00 43.88 3.32
4754 7384 4.408182 ACGTAATTGAGGAGCATAGCTT 57.592 40.909 0.00 0.00 39.88 3.74
4755 7385 4.770795 ACGTAATTGAGGAGCATAGCTTT 58.229 39.130 0.00 0.00 39.88 3.51
4756 7386 4.811557 ACGTAATTGAGGAGCATAGCTTTC 59.188 41.667 0.00 0.00 39.88 2.62
4757 7387 4.811024 CGTAATTGAGGAGCATAGCTTTCA 59.189 41.667 0.00 0.00 39.88 2.69
4758 7388 5.050499 CGTAATTGAGGAGCATAGCTTTCAG 60.050 44.000 0.00 0.00 39.88 3.02
4759 7389 2.322355 TGAGGAGCATAGCTTTCAGC 57.678 50.000 0.00 0.00 39.88 4.26
4797 7427 6.483640 TGTTTTCTCTCTCAAAAAGACTAGCC 59.516 38.462 0.00 0.00 0.00 3.93
4799 7429 5.398603 TCTCTCTCAAAAAGACTAGCCTG 57.601 43.478 0.00 0.00 0.00 4.85
4819 7449 6.780031 AGCCTGCTATTCTATCTTCTTCAGTA 59.220 38.462 0.00 0.00 0.00 2.74
4821 7451 7.598493 GCCTGCTATTCTATCTTCTTCAGTAAG 59.402 40.741 0.00 0.00 0.00 2.34
4840 7470 3.880047 AGAATGTTTGCATCACATGGG 57.120 42.857 11.73 0.00 34.97 4.00
4920 7573 5.536497 AGGAGGGATACAAGAAACCAAAT 57.464 39.130 0.00 0.00 39.74 2.32
4924 7577 5.812286 AGGGATACAAGAAACCAAATACGT 58.188 37.500 0.00 0.00 39.74 3.57
4925 7578 5.878669 AGGGATACAAGAAACCAAATACGTC 59.121 40.000 0.00 0.00 39.74 4.34
4934 7587 7.887996 AGAAACCAAATACGTCGTTGTAATA 57.112 32.000 1.78 0.00 0.00 0.98
4940 7593 6.397243 CAAATACGTCGTTGTAATAAGGTCG 58.603 40.000 1.78 0.00 0.00 4.79
4975 7628 4.318760 CGACGCAATCAGAAGAAAAGTTGA 60.319 41.667 0.00 0.00 0.00 3.18
4981 7634 9.132521 CGCAATCAGAAGAAAAGTTGAAATATT 57.867 29.630 0.00 0.00 0.00 1.28
5080 7734 1.202687 CCTCTGAGTGCCAACAAGTCA 60.203 52.381 3.66 0.00 0.00 3.41
5082 7736 0.947244 CTGAGTGCCAACAAGTCACC 59.053 55.000 0.00 0.00 0.00 4.02
5095 7749 1.878953 AGTCACCTTGGCGTTTAGTG 58.121 50.000 0.00 0.00 0.00 2.74
5119 7773 2.095372 GCTTTCGGTACTACATGCCAAC 59.905 50.000 0.00 0.00 30.96 3.77
5120 7774 1.999048 TTCGGTACTACATGCCAACG 58.001 50.000 0.00 0.00 30.96 4.10
5142 7796 0.869880 GCAACAAGTGGGCAACGAAC 60.870 55.000 0.00 0.00 37.60 3.95
5147 7801 1.388837 AAGTGGGCAACGAACCAACC 61.389 55.000 0.00 0.00 38.73 3.77
5156 7810 2.678836 CAACGAACCAACCTGTTGTACA 59.321 45.455 9.03 0.00 38.85 2.90
5179 7833 4.083862 GTGGTGAGGCCCGGAGAC 62.084 72.222 0.73 0.00 36.04 3.36
5206 7860 4.483090 TGGGTTTGTACGCATGCA 57.517 50.000 19.57 0.00 41.68 3.96
5293 7947 7.431249 ACATCTTATATTCATCACCGTACGTT 58.569 34.615 15.21 0.00 0.00 3.99
5297 7951 7.760794 TCTTATATTCATCACCGTACGTTGTTT 59.239 33.333 15.21 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.474410 AAGGACTCCAAGGTTAAGCG 57.526 50.000 0.00 0.00 0.00 4.68
1 2 3.082548 GGAAAGGACTCCAAGGTTAAGC 58.917 50.000 0.00 0.00 35.36 3.09
2 3 3.007614 TCGGAAAGGACTCCAAGGTTAAG 59.992 47.826 0.00 0.00 34.91 1.85
3 4 2.974099 TCGGAAAGGACTCCAAGGTTAA 59.026 45.455 0.00 0.00 34.91 2.01
4 5 2.612000 TCGGAAAGGACTCCAAGGTTA 58.388 47.619 0.00 0.00 34.91 2.85
5 6 1.430992 TCGGAAAGGACTCCAAGGTT 58.569 50.000 0.00 0.00 34.91 3.50
6 7 1.430992 TTCGGAAAGGACTCCAAGGT 58.569 50.000 0.00 0.00 34.91 3.50
7 8 2.359900 CATTCGGAAAGGACTCCAAGG 58.640 52.381 0.00 0.00 34.91 3.61
8 9 1.740025 GCATTCGGAAAGGACTCCAAG 59.260 52.381 0.00 0.00 34.91 3.61
9 10 1.821216 GCATTCGGAAAGGACTCCAA 58.179 50.000 0.00 0.00 34.91 3.53
10 11 0.391130 CGCATTCGGAAAGGACTCCA 60.391 55.000 0.00 0.00 34.91 3.86
11 12 2.384203 CGCATTCGGAAAGGACTCC 58.616 57.895 0.00 0.00 0.00 3.85
22 23 1.305219 TTTTCTGGGAGCCGCATTCG 61.305 55.000 0.00 0.00 0.00 3.34
23 24 0.453390 CTTTTCTGGGAGCCGCATTC 59.547 55.000 0.00 0.00 0.00 2.67
24 25 0.038166 TCTTTTCTGGGAGCCGCATT 59.962 50.000 0.00 0.00 0.00 3.56
25 26 0.038166 TTCTTTTCTGGGAGCCGCAT 59.962 50.000 0.00 0.00 0.00 4.73
26 27 0.606401 CTTCTTTTCTGGGAGCCGCA 60.606 55.000 0.00 0.00 0.00 5.69
27 28 1.308783 CCTTCTTTTCTGGGAGCCGC 61.309 60.000 0.00 0.00 0.00 6.53
28 29 0.324943 TCCTTCTTTTCTGGGAGCCG 59.675 55.000 0.00 0.00 0.00 5.52
29 30 2.586648 TTCCTTCTTTTCTGGGAGCC 57.413 50.000 0.00 0.00 0.00 4.70
70 75 5.715070 CGAGAGCCTAGTTTAATAGGGATG 58.285 45.833 5.51 0.00 42.36 3.51
107 112 7.998964 TGTCACCTCTCATCTATACATAAGTCA 59.001 37.037 0.00 0.00 0.00 3.41
134 139 7.011950 TGACGATTGTGTGTTCTTTTAATCAGT 59.988 33.333 0.00 0.00 0.00 3.41
136 141 7.252965 TGACGATTGTGTGTTCTTTTAATCA 57.747 32.000 0.00 0.00 0.00 2.57
138 143 7.971168 TGTTTGACGATTGTGTGTTCTTTTAAT 59.029 29.630 0.00 0.00 0.00 1.40
167 172 8.458843 TCTGAATAAAACATAAAAGGTGCTAGC 58.541 33.333 8.10 8.10 0.00 3.42
209 214 5.388599 ACAGGAAGAAGAAGGAAGGAAAA 57.611 39.130 0.00 0.00 0.00 2.29
212 217 3.973973 TGAACAGGAAGAAGAAGGAAGGA 59.026 43.478 0.00 0.00 0.00 3.36
213 218 4.357918 TGAACAGGAAGAAGAAGGAAGG 57.642 45.455 0.00 0.00 0.00 3.46
214 219 4.212214 CGTTGAACAGGAAGAAGAAGGAAG 59.788 45.833 0.00 0.00 0.00 3.46
215 220 4.127171 CGTTGAACAGGAAGAAGAAGGAA 58.873 43.478 0.00 0.00 0.00 3.36
216 221 3.386726 TCGTTGAACAGGAAGAAGAAGGA 59.613 43.478 0.00 0.00 0.00 3.36
217 222 3.495001 GTCGTTGAACAGGAAGAAGAAGG 59.505 47.826 0.00 0.00 0.00 3.46
218 223 3.495001 GGTCGTTGAACAGGAAGAAGAAG 59.505 47.826 0.00 0.00 0.00 2.85
219 224 3.463944 GGTCGTTGAACAGGAAGAAGAA 58.536 45.455 0.00 0.00 0.00 2.52
220 225 2.545113 CGGTCGTTGAACAGGAAGAAGA 60.545 50.000 0.00 0.00 0.00 2.87
221 226 1.792949 CGGTCGTTGAACAGGAAGAAG 59.207 52.381 0.00 0.00 0.00 2.85
234 239 0.580104 CTTCGAAGTTTGCGGTCGTT 59.420 50.000 17.24 0.00 36.21 3.85
240 245 0.721718 CTAGGGCTTCGAAGTTTGCG 59.278 55.000 25.24 8.90 0.00 4.85
243 248 0.618981 CCCCTAGGGCTTCGAAGTTT 59.381 55.000 23.84 13.78 35.35 2.66
271 276 1.264749 TGACCTTATCGCCAGGCACT 61.265 55.000 13.30 0.00 43.88 4.40
272 277 0.392461 TTGACCTTATCGCCAGGCAC 60.392 55.000 13.30 0.00 34.32 5.01
273 278 0.392461 GTTGACCTTATCGCCAGGCA 60.392 55.000 13.30 0.00 34.32 4.75
274 279 1.095807 GGTTGACCTTATCGCCAGGC 61.096 60.000 0.00 0.00 34.32 4.85
276 281 2.798499 CGTAGGTTGACCTTATCGCCAG 60.798 54.545 8.18 0.00 46.09 4.85
278 283 1.537562 CCGTAGGTTGACCTTATCGCC 60.538 57.143 8.18 0.00 46.09 5.54
279 284 1.849097 CCGTAGGTTGACCTTATCGC 58.151 55.000 8.18 0.00 46.09 4.58
297 2767 2.534903 GCGGCGGCTATGAGTTTCC 61.535 63.158 9.78 0.00 35.83 3.13
298 2768 2.871427 CGCGGCGGCTATGAGTTTC 61.871 63.158 15.84 0.00 36.88 2.78
318 2788 1.361271 CATGATGAACCCGCATGGC 59.639 57.895 0.00 0.00 36.61 4.40
320 2790 0.664761 GTCCATGATGAACCCGCATG 59.335 55.000 0.00 0.00 39.20 4.06
321 2791 0.815213 CGTCCATGATGAACCCGCAT 60.815 55.000 0.00 0.00 0.00 4.73
324 2794 0.391130 ACACGTCCATGATGAACCCG 60.391 55.000 0.00 0.00 0.00 5.28
325 2795 1.086696 CACACGTCCATGATGAACCC 58.913 55.000 0.00 0.00 0.00 4.11
328 2798 0.035534 CCCCACACGTCCATGATGAA 60.036 55.000 0.00 0.00 0.00 2.57
331 2801 0.035439 GAACCCCACACGTCCATGAT 60.035 55.000 0.00 0.00 0.00 2.45
332 2802 1.373435 GAACCCCACACGTCCATGA 59.627 57.895 0.00 0.00 0.00 3.07
333 2803 1.674322 GGAACCCCACACGTCCATG 60.674 63.158 0.00 0.00 0.00 3.66
334 2804 2.124507 CTGGAACCCCACACGTCCAT 62.125 60.000 0.00 0.00 37.58 3.41
335 2805 2.768769 TGGAACCCCACACGTCCA 60.769 61.111 0.00 0.00 37.58 4.02
336 2806 2.032071 CTGGAACCCCACACGTCC 59.968 66.667 0.00 0.00 37.58 4.79
338 2808 2.770904 ACCTGGAACCCCACACGT 60.771 61.111 0.00 0.00 37.58 4.49
339 2809 2.032071 GACCTGGAACCCCACACG 59.968 66.667 0.00 0.00 37.58 4.49
346 2816 2.885266 GTTCTTTTGGAGACCTGGAACC 59.115 50.000 0.00 1.02 33.02 3.62
349 2819 3.820557 CAAGTTCTTTTGGAGACCTGGA 58.179 45.455 0.00 0.00 33.02 3.86
350 2820 2.294512 GCAAGTTCTTTTGGAGACCTGG 59.705 50.000 0.00 0.00 33.02 4.45
352 2822 3.217626 CAGCAAGTTCTTTTGGAGACCT 58.782 45.455 0.00 0.00 33.02 3.85
376 2846 0.673985 TAGCGCGATAGGCAAGACAT 59.326 50.000 12.10 0.00 43.84 3.06
394 2864 1.823295 GATGTTGCCGAGGAGCCTA 59.177 57.895 0.00 0.00 0.00 3.93
400 2870 1.970917 GCAAGACGATGTTGCCGAGG 61.971 60.000 9.13 0.00 43.80 4.63
425 2896 1.204146 ATATCCCCAACACTGAGCGT 58.796 50.000 0.00 0.00 0.00 5.07
426 2897 3.006859 TCATATATCCCCAACACTGAGCG 59.993 47.826 0.00 0.00 0.00 5.03
427 2898 4.623932 TCATATATCCCCAACACTGAGC 57.376 45.455 0.00 0.00 0.00 4.26
431 2902 4.593206 ACGTCATCATATATCCCCAACACT 59.407 41.667 0.00 0.00 0.00 3.55
432 2903 4.690748 CACGTCATCATATATCCCCAACAC 59.309 45.833 0.00 0.00 0.00 3.32
436 2907 4.591072 TGAACACGTCATCATATATCCCCA 59.409 41.667 0.00 0.00 0.00 4.96
437 2908 5.147330 TGAACACGTCATCATATATCCCC 57.853 43.478 0.00 0.00 0.00 4.81
441 2912 7.209475 TCACACATGAACACGTCATCATATAT 58.791 34.615 11.21 0.47 44.01 0.86
445 2916 3.663025 TCACACATGAACACGTCATCAT 58.337 40.909 0.00 6.75 44.01 2.45
458 2929 5.806502 ACAGTTCAAACATTGTTCACACATG 59.193 36.000 1.83 0.00 31.06 3.21
459 2930 5.806502 CACAGTTCAAACATTGTTCACACAT 59.193 36.000 1.83 0.00 31.06 3.21
464 2935 4.460731 TGGACACAGTTCAAACATTGTTCA 59.539 37.500 1.83 4.55 32.28 3.18
467 2938 3.761218 TGTGGACACAGTTCAAACATTGT 59.239 39.130 0.13 0.00 36.21 2.71
499 2970 6.503589 TTACCCATGTACATTACTTTGCAC 57.496 37.500 5.37 0.00 0.00 4.57
511 2982 5.176223 CACCGTAATCGAATTACCCATGTAC 59.824 44.000 0.00 0.00 41.55 2.90
512 2983 5.291178 CACCGTAATCGAATTACCCATGTA 58.709 41.667 0.00 0.00 41.55 2.29
522 2993 4.258543 ACACATTTCCACCGTAATCGAAT 58.741 39.130 0.00 0.00 39.71 3.34
524 2995 3.322211 ACACATTTCCACCGTAATCGA 57.678 42.857 0.00 0.00 39.71 3.59
548 3019 1.202099 TAGCCACCATTCCGGAACCA 61.202 55.000 21.56 0.00 38.63 3.67
611 3082 1.577468 TAGCGACACAACACCAACAG 58.423 50.000 0.00 0.00 0.00 3.16
660 3135 1.143373 TCGATGAACGTACGGCATGC 61.143 55.000 24.31 9.90 43.13 4.06
820 3296 1.068055 GTGACCTCGAACGTGTACCAT 60.068 52.381 0.00 0.00 0.00 3.55
864 3346 1.609208 GAGCTTTCAGCCTTTCACCA 58.391 50.000 0.00 0.00 43.77 4.17
867 3349 1.421268 TCAGGAGCTTTCAGCCTTTCA 59.579 47.619 0.00 0.00 43.77 2.69
868 3350 2.083002 CTCAGGAGCTTTCAGCCTTTC 58.917 52.381 0.00 0.00 43.77 2.62
869 3351 1.701847 TCTCAGGAGCTTTCAGCCTTT 59.298 47.619 0.00 0.00 43.77 3.11
870 3352 1.003003 GTCTCAGGAGCTTTCAGCCTT 59.997 52.381 0.00 0.00 43.77 4.35
871 3353 0.612744 GTCTCAGGAGCTTTCAGCCT 59.387 55.000 0.00 0.00 43.77 4.58
872 3354 0.322975 TGTCTCAGGAGCTTTCAGCC 59.677 55.000 0.00 0.00 43.77 4.85
873 3355 1.274728 TCTGTCTCAGGAGCTTTCAGC 59.725 52.381 0.00 0.00 35.12 4.26
874 3356 3.448301 AGATCTGTCTCAGGAGCTTTCAG 59.552 47.826 0.00 0.00 31.51 3.02
910 3392 3.297134 TTTAAGGGCATCCATGGAGAC 57.703 47.619 21.33 13.98 34.83 3.36
911 3393 3.269381 ACTTTTAAGGGCATCCATGGAGA 59.731 43.478 21.33 0.00 34.83 3.71
912 3394 3.635591 ACTTTTAAGGGCATCCATGGAG 58.364 45.455 21.33 13.09 34.83 3.86
913 3395 3.756082 ACTTTTAAGGGCATCCATGGA 57.244 42.857 18.88 18.88 34.83 3.41
914 3396 3.118665 CCAACTTTTAAGGGCATCCATGG 60.119 47.826 4.97 4.97 34.83 3.66
933 3415 1.527380 GAAGGACCACGGCAACCAA 60.527 57.895 0.00 0.00 0.00 3.67
957 3439 0.179048 TGTGACTTGTGAGCCTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
985 3467 3.011818 CTGCCATACTGCAATGAACTCA 58.988 45.455 0.00 0.00 41.51 3.41
995 3477 0.097674 CAAACTCGCTGCCATACTGC 59.902 55.000 0.00 0.00 39.69 4.40
999 3481 1.086696 GCTTCAAACTCGCTGCCATA 58.913 50.000 0.00 0.00 0.00 2.74
1044 3526 4.767255 GCAGGTGACGAGCAGGGG 62.767 72.222 0.00 0.00 36.45 4.79
1053 3535 1.107945 GAGAGGAGTAGGCAGGTGAC 58.892 60.000 0.00 0.00 0.00 3.67
1057 3539 0.106918 AGACGAGAGGAGTAGGCAGG 60.107 60.000 0.00 0.00 0.00 4.85
1106 3597 0.256752 TGATGCTTGGACATGGGGAG 59.743 55.000 0.00 0.00 0.00 4.30
1156 3647 2.851195 ACCTCTTGTTTCGTGCTCAAT 58.149 42.857 0.00 0.00 0.00 2.57
1161 3652 3.991773 TGTATGTACCTCTTGTTTCGTGC 59.008 43.478 0.00 0.00 0.00 5.34
1175 3666 2.943033 GAGGCCACATGGTTGTATGTAC 59.057 50.000 5.01 0.00 39.17 2.90
1213 3704 1.867919 CTGGACAGCGTCTTCGGAGT 61.868 60.000 8.26 0.00 37.56 3.85
1254 3745 2.277969 TCGTAGCTGAGGAAGTAGTCG 58.722 52.381 0.00 0.00 0.00 4.18
1267 3758 0.396811 AGTGGTTTTGGCTCGTAGCT 59.603 50.000 0.00 0.00 41.99 3.32
1268 3759 0.517316 CAGTGGTTTTGGCTCGTAGC 59.483 55.000 0.00 0.00 41.46 3.58
1297 3788 9.982651 CAAATTATATGTACAGGTAGCACTAGT 57.017 33.333 0.33 0.00 0.00 2.57
1338 3831 2.858644 TGGAAATGGAGGGAGTATGGT 58.141 47.619 0.00 0.00 0.00 3.55
1356 3849 8.773645 TGAACTATCAAAGCGTCATATATTTGG 58.226 33.333 0.00 0.00 34.25 3.28
1396 3889 5.297569 AGTATGGATTAGGAGGAAAGCAC 57.702 43.478 0.00 0.00 0.00 4.40
1449 3942 9.934190 GACGTTTTGGTAGTTCAATTTAAACTA 57.066 29.630 6.23 6.23 38.00 2.24
1450 3943 8.680001 AGACGTTTTGGTAGTTCAATTTAAACT 58.320 29.630 7.83 7.83 40.06 2.66
1451 3944 8.845942 AGACGTTTTGGTAGTTCAATTTAAAC 57.154 30.769 0.00 0.00 0.00 2.01
1513 4006 3.813166 GTGTAGCAAGCCTGTTTCAAGTA 59.187 43.478 0.00 0.00 0.00 2.24
1514 4007 2.618709 GTGTAGCAAGCCTGTTTCAAGT 59.381 45.455 0.00 0.00 0.00 3.16
1515 4008 2.030805 GGTGTAGCAAGCCTGTTTCAAG 60.031 50.000 0.00 0.00 0.00 3.02
1516 4009 1.953686 GGTGTAGCAAGCCTGTTTCAA 59.046 47.619 0.00 0.00 0.00 2.69
1517 4010 1.133945 TGGTGTAGCAAGCCTGTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
1518 4011 1.266989 GTGGTGTAGCAAGCCTGTTTC 59.733 52.381 0.00 0.00 0.00 2.78
1519 4012 1.133792 AGTGGTGTAGCAAGCCTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
1520 4013 0.474184 AGTGGTGTAGCAAGCCTGTT 59.526 50.000 0.00 0.00 0.00 3.16
1521 4014 1.348064 TAGTGGTGTAGCAAGCCTGT 58.652 50.000 0.00 0.00 0.00 4.00
1522 4015 2.076863 GTTAGTGGTGTAGCAAGCCTG 58.923 52.381 0.00 0.00 0.00 4.85
1523 4016 1.003233 GGTTAGTGGTGTAGCAAGCCT 59.997 52.381 0.00 0.00 0.00 4.58
1526 4019 4.002906 TCTTGGTTAGTGGTGTAGCAAG 57.997 45.455 0.00 0.00 44.50 4.01
1765 4303 3.507622 GCATGGATTAATTAGCTGGGGTC 59.492 47.826 0.00 0.00 0.00 4.46
1886 4424 4.517453 TCCAACAAGGTTATTCTTTCCACG 59.483 41.667 0.00 0.00 39.02 4.94
1993 4531 1.539388 CGTGATGGAGGCTAGAGCTAG 59.461 57.143 0.81 0.13 41.70 3.42
2048 4586 8.826765 ACATATATACCTGAAGATACCCAAAGG 58.173 37.037 0.00 0.00 40.04 3.11
2106 4647 3.010027 TGTGGCTCCTTTGTGGATATTCA 59.990 43.478 0.00 0.00 45.16 2.57
2111 4652 2.242043 CTTTGTGGCTCCTTTGTGGAT 58.758 47.619 0.00 0.00 45.16 3.41
2113 4654 0.675633 CCTTTGTGGCTCCTTTGTGG 59.324 55.000 0.00 0.00 37.10 4.17
2132 4673 3.264947 GAATTTTGCAAATGGAGGCCTC 58.735 45.455 25.59 25.59 0.00 4.70
2133 4674 2.638855 TGAATTTTGCAAATGGAGGCCT 59.361 40.909 13.65 3.86 0.00 5.19
2134 4675 3.056588 TGAATTTTGCAAATGGAGGCC 57.943 42.857 13.65 0.00 0.00 5.19
2136 4677 7.649973 TGAATTTTGAATTTTGCAAATGGAGG 58.350 30.769 13.65 0.00 35.41 4.30
2192 4733 8.605947 ACACTATGCCTCCATGTATATTTGTAT 58.394 33.333 0.00 0.00 32.85 2.29
2193 4734 7.973402 ACACTATGCCTCCATGTATATTTGTA 58.027 34.615 0.00 0.00 32.85 2.41
2194 4735 6.841601 ACACTATGCCTCCATGTATATTTGT 58.158 36.000 0.00 0.00 32.85 2.83
2195 4736 7.877612 TGTACACTATGCCTCCATGTATATTTG 59.122 37.037 0.00 0.00 32.85 2.32
2196 4737 7.973402 TGTACACTATGCCTCCATGTATATTT 58.027 34.615 0.00 0.00 32.85 1.40
2197 4738 7.553504 TGTACACTATGCCTCCATGTATATT 57.446 36.000 0.00 0.00 32.85 1.28
2198 4739 7.180946 ACATGTACACTATGCCTCCATGTATAT 59.819 37.037 0.00 0.00 39.51 0.86
2199 4740 6.496911 ACATGTACACTATGCCTCCATGTATA 59.503 38.462 0.00 0.00 39.51 1.47
2200 4741 5.307976 ACATGTACACTATGCCTCCATGTAT 59.692 40.000 0.00 0.00 39.51 2.29
2201 4742 4.653801 ACATGTACACTATGCCTCCATGTA 59.346 41.667 0.00 0.00 39.51 2.29
2202 4743 3.455910 ACATGTACACTATGCCTCCATGT 59.544 43.478 0.00 0.00 37.27 3.21
2203 4744 3.811497 CACATGTACACTATGCCTCCATG 59.189 47.826 0.00 0.00 35.52 3.66
2204 4745 3.455910 ACACATGTACACTATGCCTCCAT 59.544 43.478 0.00 0.00 35.44 3.41
2205 4746 2.837591 ACACATGTACACTATGCCTCCA 59.162 45.455 0.00 0.00 0.00 3.86
2206 4747 3.198068 CACACATGTACACTATGCCTCC 58.802 50.000 0.00 0.00 0.00 4.30
2207 4748 3.861840 ACACACATGTACACTATGCCTC 58.138 45.455 0.00 0.00 37.26 4.70
2208 4749 3.981071 ACACACATGTACACTATGCCT 57.019 42.857 0.00 0.00 37.26 4.75
2209 4750 6.315144 TGATTTACACACATGTACACTATGCC 59.685 38.462 0.00 0.00 41.12 4.40
2210 4751 7.302350 TGATTTACACACATGTACACTATGC 57.698 36.000 0.00 0.00 41.12 3.14
2226 4767 8.996024 TCATCTCGACAATTTAGTGATTTACA 57.004 30.769 0.00 0.00 0.00 2.41
2229 4770 9.778993 CATTTCATCTCGACAATTTAGTGATTT 57.221 29.630 0.00 0.00 0.00 2.17
2230 4771 7.912250 GCATTTCATCTCGACAATTTAGTGATT 59.088 33.333 0.00 0.00 0.00 2.57
2231 4772 7.412853 GCATTTCATCTCGACAATTTAGTGAT 58.587 34.615 0.00 0.00 0.00 3.06
2232 4773 6.455513 CGCATTTCATCTCGACAATTTAGTGA 60.456 38.462 0.00 0.00 0.00 3.41
2233 4774 5.674148 CGCATTTCATCTCGACAATTTAGTG 59.326 40.000 0.00 0.00 0.00 2.74
2234 4775 5.351465 ACGCATTTCATCTCGACAATTTAGT 59.649 36.000 0.00 0.00 0.00 2.24
2235 4776 5.799960 ACGCATTTCATCTCGACAATTTAG 58.200 37.500 0.00 0.00 0.00 1.85
2236 4777 5.794687 ACGCATTTCATCTCGACAATTTA 57.205 34.783 0.00 0.00 0.00 1.40
2237 4778 4.685169 ACGCATTTCATCTCGACAATTT 57.315 36.364 0.00 0.00 0.00 1.82
2238 4779 4.154015 TCAACGCATTTCATCTCGACAATT 59.846 37.500 0.00 0.00 0.00 2.32
2239 4780 3.684305 TCAACGCATTTCATCTCGACAAT 59.316 39.130 0.00 0.00 0.00 2.71
2240 4781 3.063485 TCAACGCATTTCATCTCGACAA 58.937 40.909 0.00 0.00 0.00 3.18
2241 4782 2.682836 TCAACGCATTTCATCTCGACA 58.317 42.857 0.00 0.00 0.00 4.35
2242 4783 3.722555 TTCAACGCATTTCATCTCGAC 57.277 42.857 0.00 0.00 0.00 4.20
2243 4784 4.391523 TCATTTCAACGCATTTCATCTCGA 59.608 37.500 0.00 0.00 0.00 4.04
2244 4785 4.650985 TCATTTCAACGCATTTCATCTCG 58.349 39.130 0.00 0.00 0.00 4.04
2245 4786 5.032863 CCTCATTTCAACGCATTTCATCTC 58.967 41.667 0.00 0.00 0.00 2.75
2246 4787 4.460382 ACCTCATTTCAACGCATTTCATCT 59.540 37.500 0.00 0.00 0.00 2.90
2247 4788 4.737054 ACCTCATTTCAACGCATTTCATC 58.263 39.130 0.00 0.00 0.00 2.92
2248 4789 4.460382 AGACCTCATTTCAACGCATTTCAT 59.540 37.500 0.00 0.00 0.00 2.57
2249 4790 3.820467 AGACCTCATTTCAACGCATTTCA 59.180 39.130 0.00 0.00 0.00 2.69
2250 4791 4.161333 CAGACCTCATTTCAACGCATTTC 58.839 43.478 0.00 0.00 0.00 2.17
2251 4792 3.612479 GCAGACCTCATTTCAACGCATTT 60.612 43.478 0.00 0.00 0.00 2.32
2252 4793 2.095059 GCAGACCTCATTTCAACGCATT 60.095 45.455 0.00 0.00 0.00 3.56
2253 4794 1.470098 GCAGACCTCATTTCAACGCAT 59.530 47.619 0.00 0.00 0.00 4.73
2254 4795 0.874390 GCAGACCTCATTTCAACGCA 59.126 50.000 0.00 0.00 0.00 5.24
2255 4796 0.179215 CGCAGACCTCATTTCAACGC 60.179 55.000 0.00 0.00 0.00 4.84
2256 4797 0.179215 GCGCAGACCTCATTTCAACG 60.179 55.000 0.30 0.00 0.00 4.10
2257 4798 0.874390 TGCGCAGACCTCATTTCAAC 59.126 50.000 5.66 0.00 0.00 3.18
2258 4799 1.603456 TTGCGCAGACCTCATTTCAA 58.397 45.000 11.31 0.00 0.00 2.69
2259 4800 1.603456 TTTGCGCAGACCTCATTTCA 58.397 45.000 11.31 0.00 0.00 2.69
2260 4801 2.704725 TTTTGCGCAGACCTCATTTC 57.295 45.000 11.31 0.00 0.00 2.17
2278 4819 4.408596 TGTTCTGAAAAGCCCCAGATTTTT 59.591 37.500 0.00 0.00 41.48 1.94
2279 4820 3.966665 TGTTCTGAAAAGCCCCAGATTTT 59.033 39.130 0.00 0.00 43.98 1.82
2280 4821 3.575805 TGTTCTGAAAAGCCCCAGATTT 58.424 40.909 0.00 0.00 38.97 2.17
2281 4822 3.243359 TGTTCTGAAAAGCCCCAGATT 57.757 42.857 0.00 0.00 38.97 2.40
2282 4823 2.978156 TGTTCTGAAAAGCCCCAGAT 57.022 45.000 0.00 0.00 38.97 2.90
2283 4824 2.108075 TCATGTTCTGAAAAGCCCCAGA 59.892 45.455 0.00 0.00 37.61 3.86
2284 4825 2.517959 TCATGTTCTGAAAAGCCCCAG 58.482 47.619 0.00 0.00 0.00 4.45
2285 4826 2.673775 TCATGTTCTGAAAAGCCCCA 57.326 45.000 0.00 0.00 0.00 4.96
2286 4827 4.273318 AGTATCATGTTCTGAAAAGCCCC 58.727 43.478 0.00 0.00 37.44 5.80
2287 4828 7.283127 TGAATAGTATCATGTTCTGAAAAGCCC 59.717 37.037 0.00 0.00 37.44 5.19
2288 4829 8.213518 TGAATAGTATCATGTTCTGAAAAGCC 57.786 34.615 0.00 0.00 37.44 4.35
2289 4830 9.875675 GATGAATAGTATCATGTTCTGAAAAGC 57.124 33.333 0.00 0.00 40.08 3.51
2292 4833 9.770097 GAGGATGAATAGTATCATGTTCTGAAA 57.230 33.333 0.00 0.00 40.08 2.69
2293 4834 8.927411 TGAGGATGAATAGTATCATGTTCTGAA 58.073 33.333 0.00 0.00 40.08 3.02
2294 4835 8.482852 TGAGGATGAATAGTATCATGTTCTGA 57.517 34.615 0.00 0.00 40.08 3.27
2295 4836 9.205719 CTTGAGGATGAATAGTATCATGTTCTG 57.794 37.037 0.00 0.00 40.08 3.02
2296 4837 8.932610 ACTTGAGGATGAATAGTATCATGTTCT 58.067 33.333 0.00 0.00 40.08 3.01
2297 4838 9.202273 GACTTGAGGATGAATAGTATCATGTTC 57.798 37.037 0.00 0.00 40.08 3.18
2298 4839 8.153550 GGACTTGAGGATGAATAGTATCATGTT 58.846 37.037 0.00 0.00 40.08 2.71
2299 4840 7.290948 TGGACTTGAGGATGAATAGTATCATGT 59.709 37.037 0.00 0.00 40.08 3.21
2300 4841 7.674120 TGGACTTGAGGATGAATAGTATCATG 58.326 38.462 0.00 0.00 40.08 3.07
2301 4842 7.862274 TGGACTTGAGGATGAATAGTATCAT 57.138 36.000 0.00 0.00 42.62 2.45
2302 4843 7.565029 TCTTGGACTTGAGGATGAATAGTATCA 59.435 37.037 0.00 0.00 0.00 2.15
2303 4844 7.957002 TCTTGGACTTGAGGATGAATAGTATC 58.043 38.462 0.00 0.00 0.00 2.24
2304 4845 7.921041 TCTTGGACTTGAGGATGAATAGTAT 57.079 36.000 0.00 0.00 0.00 2.12
2305 4846 7.733773 TTCTTGGACTTGAGGATGAATAGTA 57.266 36.000 0.00 0.00 0.00 1.82
2306 4847 6.627087 TTCTTGGACTTGAGGATGAATAGT 57.373 37.500 0.00 0.00 0.00 2.12
2307 4848 8.404000 CAAATTCTTGGACTTGAGGATGAATAG 58.596 37.037 0.00 0.00 0.00 1.73
2308 4849 7.890127 ACAAATTCTTGGACTTGAGGATGAATA 59.110 33.333 0.00 0.00 36.82 1.75
2309 4850 6.723052 ACAAATTCTTGGACTTGAGGATGAAT 59.277 34.615 0.00 0.00 36.82 2.57
2310 4851 6.070656 ACAAATTCTTGGACTTGAGGATGAA 58.929 36.000 0.00 0.00 36.82 2.57
2311 4852 5.634118 ACAAATTCTTGGACTTGAGGATGA 58.366 37.500 0.00 0.00 36.82 2.92
2312 4853 5.972107 ACAAATTCTTGGACTTGAGGATG 57.028 39.130 0.00 0.00 36.82 3.51
2313 4854 6.983906 AAACAAATTCTTGGACTTGAGGAT 57.016 33.333 0.00 0.00 36.82 3.24
2314 4855 6.790232 AAAACAAATTCTTGGACTTGAGGA 57.210 33.333 0.00 0.00 36.82 3.71
2337 4878 7.038154 CCTTGAAAGGTGATCTGTACAAAAA 57.962 36.000 0.00 0.00 41.41 1.94
2338 4879 6.633500 CCTTGAAAGGTGATCTGTACAAAA 57.367 37.500 0.00 0.00 41.41 2.44
2349 4890 8.073720 TTCAGGTTGAAATACCTTGAAAGGTGA 61.074 37.037 22.36 8.87 46.39 4.02
2350 4891 6.040391 TTCAGGTTGAAATACCTTGAAAGGTG 59.960 38.462 22.36 4.25 46.39 4.00
2351 4892 6.133356 TTCAGGTTGAAATACCTTGAAAGGT 58.867 36.000 18.37 18.37 46.39 3.50
2352 4893 6.648879 TTCAGGTTGAAATACCTTGAAAGG 57.351 37.500 7.57 7.57 46.39 3.11
2353 4894 9.546428 AAAATTCAGGTTGAAATACCTTGAAAG 57.454 29.630 0.00 0.00 46.39 2.62
2354 4895 9.898152 AAAAATTCAGGTTGAAATACCTTGAAA 57.102 25.926 0.00 0.00 46.39 2.69
2356 4897 9.974980 GTAAAAATTCAGGTTGAAATACCTTGA 57.025 29.630 0.00 0.00 46.39 3.02
2357 4898 9.757227 TGTAAAAATTCAGGTTGAAATACCTTG 57.243 29.630 0.00 0.00 46.39 3.61
2358 4899 9.758651 GTGTAAAAATTCAGGTTGAAATACCTT 57.241 29.630 0.00 0.00 46.39 3.50
2360 4901 8.974408 GTGTGTAAAAATTCAGGTTGAAATACC 58.026 33.333 0.00 0.00 40.12 2.73
2361 4902 9.522804 TGTGTGTAAAAATTCAGGTTGAAATAC 57.477 29.630 0.00 0.00 40.12 1.89
2378 4919 9.980780 CAACGATGAAATGTATATGTGTGTAAA 57.019 29.630 0.00 0.00 0.00 2.01
2379 4920 9.157104 ACAACGATGAAATGTATATGTGTGTAA 57.843 29.630 0.00 0.00 0.00 2.41
2380 4921 8.710835 ACAACGATGAAATGTATATGTGTGTA 57.289 30.769 0.00 0.00 0.00 2.90
2381 4922 7.609760 ACAACGATGAAATGTATATGTGTGT 57.390 32.000 0.00 0.00 0.00 3.72
2388 4929 9.758651 AGCAAGTATACAACGATGAAATGTATA 57.241 29.630 5.50 0.00 39.99 1.47
2389 4930 8.662781 AGCAAGTATACAACGATGAAATGTAT 57.337 30.769 5.50 0.00 41.67 2.29
2390 4931 8.487313 AAGCAAGTATACAACGATGAAATGTA 57.513 30.769 5.50 0.00 34.35 2.29
2391 4932 6.985188 AGCAAGTATACAACGATGAAATGT 57.015 33.333 5.50 0.00 0.00 2.71
2392 4933 8.673626 AAAAGCAAGTATACAACGATGAAATG 57.326 30.769 5.50 0.00 0.00 2.32
2416 4957 6.321690 TCCGGTTTCAGTAAAATCTGGAAAAA 59.678 34.615 0.00 0.00 35.10 1.94
2417 4958 5.828859 TCCGGTTTCAGTAAAATCTGGAAAA 59.171 36.000 0.00 0.00 35.10 2.29
2418 4959 5.378332 TCCGGTTTCAGTAAAATCTGGAAA 58.622 37.500 0.00 0.00 35.10 3.13
2419 4960 4.975631 TCCGGTTTCAGTAAAATCTGGAA 58.024 39.130 0.00 0.00 33.86 3.53
2420 4961 4.627284 TCCGGTTTCAGTAAAATCTGGA 57.373 40.909 0.00 0.00 34.13 3.86
2421 4962 5.472137 TCTTTCCGGTTTCAGTAAAATCTGG 59.528 40.000 0.00 0.00 36.25 3.86
2422 4963 6.554334 TCTTTCCGGTTTCAGTAAAATCTG 57.446 37.500 0.00 0.00 36.85 2.90
2423 4964 7.447238 TCAATCTTTCCGGTTTCAGTAAAATCT 59.553 33.333 0.00 0.00 0.00 2.40
2424 4965 7.590279 TCAATCTTTCCGGTTTCAGTAAAATC 58.410 34.615 0.00 0.00 0.00 2.17
2425 4966 7.519032 TCAATCTTTCCGGTTTCAGTAAAAT 57.481 32.000 0.00 0.00 0.00 1.82
2426 4967 6.945938 TCAATCTTTCCGGTTTCAGTAAAA 57.054 33.333 0.00 0.00 0.00 1.52
2427 4968 6.945938 TTCAATCTTTCCGGTTTCAGTAAA 57.054 33.333 0.00 0.00 0.00 2.01
2428 4969 7.519032 AATTCAATCTTTCCGGTTTCAGTAA 57.481 32.000 0.00 0.00 0.00 2.24
2429 4970 7.519032 AAATTCAATCTTTCCGGTTTCAGTA 57.481 32.000 0.00 0.00 0.00 2.74
2430 4971 6.405278 AAATTCAATCTTTCCGGTTTCAGT 57.595 33.333 0.00 0.00 0.00 3.41
2431 4972 6.922957 TCAAAATTCAATCTTTCCGGTTTCAG 59.077 34.615 0.00 0.00 0.00 3.02
2432 4973 6.810911 TCAAAATTCAATCTTTCCGGTTTCA 58.189 32.000 0.00 0.00 0.00 2.69
2433 4974 7.889589 ATCAAAATTCAATCTTTCCGGTTTC 57.110 32.000 0.00 0.00 0.00 2.78
2434 4975 8.675705 AAATCAAAATTCAATCTTTCCGGTTT 57.324 26.923 0.00 0.00 0.00 3.27
2435 4976 8.675705 AAAATCAAAATTCAATCTTTCCGGTT 57.324 26.923 0.00 0.00 0.00 4.44
2436 4977 8.675705 AAAAATCAAAATTCAATCTTTCCGGT 57.324 26.923 0.00 0.00 0.00 5.28
2458 4999 5.941555 TGGAGCCCTTTAAGTTTGAAAAA 57.058 34.783 0.00 0.00 0.00 1.94
2459 5000 5.221621 CCATGGAGCCCTTTAAGTTTGAAAA 60.222 40.000 5.56 0.00 0.00 2.29
2460 5001 4.283212 CCATGGAGCCCTTTAAGTTTGAAA 59.717 41.667 5.56 0.00 0.00 2.69
2461 5002 3.831911 CCATGGAGCCCTTTAAGTTTGAA 59.168 43.478 5.56 0.00 0.00 2.69
2462 5003 3.075283 TCCATGGAGCCCTTTAAGTTTGA 59.925 43.478 11.44 0.00 0.00 2.69
2463 5004 3.430453 TCCATGGAGCCCTTTAAGTTTG 58.570 45.455 11.44 0.00 0.00 2.93
2464 5005 3.701664 CTCCATGGAGCCCTTTAAGTTT 58.298 45.455 28.45 0.00 35.31 2.66
2465 5006 3.372440 CTCCATGGAGCCCTTTAAGTT 57.628 47.619 28.45 0.00 35.31 2.66
2476 5017 0.393537 GGTGACCAAGCTCCATGGAG 60.394 60.000 33.73 33.73 44.56 3.86
2477 5018 1.133181 TGGTGACCAAGCTCCATGGA 61.133 55.000 15.27 15.27 40.56 3.41
2478 5019 0.251297 TTGGTGACCAAGCTCCATGG 60.251 55.000 14.05 4.97 38.75 3.66
2479 5020 1.619654 TTTGGTGACCAAGCTCCATG 58.380 50.000 17.50 0.00 44.84 3.66
2480 5021 1.963515 GTTTTGGTGACCAAGCTCCAT 59.036 47.619 17.50 0.00 44.84 3.41
2481 5022 1.398692 GTTTTGGTGACCAAGCTCCA 58.601 50.000 17.50 0.00 44.84 3.86
2482 5023 0.310854 CGTTTTGGTGACCAAGCTCC 59.689 55.000 17.50 5.95 44.84 4.70
2483 5024 0.317854 GCGTTTTGGTGACCAAGCTC 60.318 55.000 17.50 10.59 44.84 4.09
2484 5025 1.733526 GCGTTTTGGTGACCAAGCT 59.266 52.632 17.50 0.00 44.84 3.74
2485 5026 1.299850 GGCGTTTTGGTGACCAAGC 60.300 57.895 17.50 16.74 44.84 4.01
2486 5027 1.362355 GGGCGTTTTGGTGACCAAG 59.638 57.895 17.50 7.42 44.84 3.61
2487 5028 2.128507 GGGGCGTTTTGGTGACCAA 61.129 57.895 14.05 14.05 42.29 3.67
2488 5029 2.519780 GGGGCGTTTTGGTGACCA 60.520 61.111 0.00 0.00 0.00 4.02
2489 5030 2.519780 TGGGGCGTTTTGGTGACC 60.520 61.111 0.00 0.00 0.00 4.02
2490 5031 1.792118 GAGTGGGGCGTTTTGGTGAC 61.792 60.000 0.00 0.00 0.00 3.67
2491 5032 1.527380 GAGTGGGGCGTTTTGGTGA 60.527 57.895 0.00 0.00 0.00 4.02
2492 5033 1.528309 AGAGTGGGGCGTTTTGGTG 60.528 57.895 0.00 0.00 0.00 4.17
2493 5034 1.528309 CAGAGTGGGGCGTTTTGGT 60.528 57.895 0.00 0.00 0.00 3.67
2494 5035 0.250553 TACAGAGTGGGGCGTTTTGG 60.251 55.000 0.00 0.00 0.00 3.28
2495 5036 1.468520 CATACAGAGTGGGGCGTTTTG 59.531 52.381 0.00 0.00 0.00 2.44
2496 5037 1.073284 ACATACAGAGTGGGGCGTTTT 59.927 47.619 0.00 0.00 0.00 2.43
2497 5038 0.690762 ACATACAGAGTGGGGCGTTT 59.309 50.000 0.00 0.00 0.00 3.60
2498 5039 0.690762 AACATACAGAGTGGGGCGTT 59.309 50.000 0.00 0.00 0.00 4.84
2499 5040 0.036388 CAACATACAGAGTGGGGCGT 60.036 55.000 0.00 0.00 0.00 5.68
2500 5041 1.369091 GCAACATACAGAGTGGGGCG 61.369 60.000 0.00 0.00 0.00 6.13
2501 5042 0.035056 AGCAACATACAGAGTGGGGC 60.035 55.000 0.00 0.00 0.00 5.80
2502 5043 2.501723 AGTAGCAACATACAGAGTGGGG 59.498 50.000 0.00 0.00 0.00 4.96
2503 5044 3.895232 AGTAGCAACATACAGAGTGGG 57.105 47.619 0.00 0.00 0.00 4.61
2504 5045 4.645136 TCCTAGTAGCAACATACAGAGTGG 59.355 45.833 0.00 0.00 0.00 4.00
2505 5046 5.836821 TCCTAGTAGCAACATACAGAGTG 57.163 43.478 0.00 0.00 0.00 3.51
2506 5047 8.713708 ATTATCCTAGTAGCAACATACAGAGT 57.286 34.615 0.00 0.00 0.00 3.24
2513 5054 9.899661 TTGTGTTAATTATCCTAGTAGCAACAT 57.100 29.630 0.00 0.00 0.00 2.71
2514 5055 9.727859 TTTGTGTTAATTATCCTAGTAGCAACA 57.272 29.630 0.00 0.00 0.00 3.33
2516 5057 8.889717 GCTTTGTGTTAATTATCCTAGTAGCAA 58.110 33.333 0.00 0.00 0.00 3.91
2517 5058 8.265055 AGCTTTGTGTTAATTATCCTAGTAGCA 58.735 33.333 0.00 0.00 0.00 3.49
2518 5059 8.664211 AGCTTTGTGTTAATTATCCTAGTAGC 57.336 34.615 0.00 0.00 0.00 3.58
2521 5062 9.953565 TGTAAGCTTTGTGTTAATTATCCTAGT 57.046 29.630 3.20 0.00 0.00 2.57
2523 5064 9.953565 ACTGTAAGCTTTGTGTTAATTATCCTA 57.046 29.630 3.20 0.00 37.60 2.94
2524 5065 8.863872 ACTGTAAGCTTTGTGTTAATTATCCT 57.136 30.769 3.20 0.00 37.60 3.24
2525 5066 9.983804 GTACTGTAAGCTTTGTGTTAATTATCC 57.016 33.333 3.20 0.00 37.60 2.59
2529 5070 8.718734 GCTAGTACTGTAAGCTTTGTGTTAATT 58.281 33.333 3.20 0.00 37.60 1.40
2530 5071 8.095169 AGCTAGTACTGTAAGCTTTGTGTTAAT 58.905 33.333 12.04 0.00 43.97 1.40
2531 5072 7.439381 AGCTAGTACTGTAAGCTTTGTGTTAA 58.561 34.615 12.04 0.00 43.97 2.01
2539 5080 8.361139 CCATTGTATAGCTAGTACTGTAAGCTT 58.639 37.037 20.77 3.48 43.97 3.74
2638 5179 6.522054 TGGTAATATCTTTCCTAAAGCTCCG 58.478 40.000 0.00 0.00 38.39 4.63
2664 5205 2.167900 AGATAAAAGTCCCTTCGGGTCG 59.832 50.000 0.00 0.00 44.74 4.79
2684 5225 4.679373 AGATGGGCTGTGTTGTATAGAG 57.321 45.455 0.00 0.00 0.00 2.43
2695 5236 0.976641 TGAACGAGAAGATGGGCTGT 59.023 50.000 0.00 0.00 0.00 4.40
2893 5434 4.562767 TCCAATAGAGTAGGGTTATGCCA 58.437 43.478 0.00 0.00 39.65 4.92
2895 5436 4.284746 AGCTCCAATAGAGTAGGGTTATGC 59.715 45.833 0.00 0.00 45.21 3.14
3118 5670 2.583143 GCCACCACCTGAAGTACTTTT 58.417 47.619 10.02 0.00 0.00 2.27
3151 5703 2.677037 GCATAGTTTAGCCCGACACACT 60.677 50.000 0.00 0.00 0.00 3.55
3281 5833 4.084287 GGGCATCATATGTGTCATCCATT 58.916 43.478 1.90 0.00 0.00 3.16
3314 5866 4.492570 GCATTTAGTTGTCGACATTCCTCG 60.493 45.833 20.80 6.97 34.83 4.63
3413 5967 9.811995 CATGAAAATCAGTCCATGACAAATTAT 57.188 29.630 0.00 0.00 41.91 1.28
3541 6095 2.033299 ACAAATTGCCACTTCAGTCGTG 59.967 45.455 0.00 0.00 0.00 4.35
3546 6100 3.067180 AGTGTCACAAATTGCCACTTCAG 59.933 43.478 5.62 0.00 0.00 3.02
3639 6193 6.147038 ACAAATTGAACACAAAACGAACAC 57.853 33.333 0.00 0.00 0.00 3.32
3675 6229 4.918810 AAGCGGACAAATCTTGAAACTT 57.081 36.364 0.00 0.00 0.00 2.66
3687 6241 5.607939 TCTTGGAGATAATAAGCGGACAA 57.392 39.130 0.00 0.00 0.00 3.18
3756 6310 4.299586 TGGACATGGCTGATAAACTCAA 57.700 40.909 0.00 0.00 32.14 3.02
3828 6382 3.502211 CACTCAAACGCTTCCCTTGTTAT 59.498 43.478 0.00 0.00 0.00 1.89
3830 6384 1.676006 CACTCAAACGCTTCCCTTGTT 59.324 47.619 0.00 0.00 0.00 2.83
3842 6396 1.109323 AACCAGCTGCCCACTCAAAC 61.109 55.000 8.66 0.00 0.00 2.93
3879 6433 1.153628 GTGCTATCTTCCCGCACGT 60.154 57.895 0.00 0.00 43.63 4.49
3962 6516 2.031157 CGGATTGGTGGTTGAGTTGTTC 60.031 50.000 0.00 0.00 0.00 3.18
3982 6536 5.807520 AGTTAGATACATTGTCTTGAGTGCG 59.192 40.000 0.00 0.00 0.00 5.34
4061 6618 3.402110 TGCTCAACCATGTAACACTCTG 58.598 45.455 0.00 0.00 0.00 3.35
4161 6718 3.589988 GAGGTGTGAGTGATGTTCGAAT 58.410 45.455 0.00 0.00 0.00 3.34
4212 6769 5.699915 AGCATAGAACACTAGCATGCTATTG 59.300 40.000 32.14 32.14 41.42 1.90
4315 6872 4.041075 TGAAGTGCCACACAACCTATTAGA 59.959 41.667 0.00 0.00 36.74 2.10
4357 6974 4.696877 TCCAACTCACAAGTTATGATGCAG 59.303 41.667 0.00 0.00 43.99 4.41
4429 7050 7.391148 ACGATTCCAAGTACAATTGCTTATT 57.609 32.000 5.05 0.00 0.00 1.40
4445 7066 5.195001 TGTGATATCATTCGACGATTCCA 57.805 39.130 9.02 0.00 0.00 3.53
4446 7067 6.806739 TGTATGTGATATCATTCGACGATTCC 59.193 38.462 9.02 0.00 0.00 3.01
4451 7072 6.417930 ACAACTGTATGTGATATCATTCGACG 59.582 38.462 9.02 0.10 30.82 5.12
4454 7075 7.936950 AGACAACTGTATGTGATATCATTCG 57.063 36.000 9.02 0.00 32.57 3.34
4477 7098 2.102252 GAGAGAGGCAATGTGGAGGTAG 59.898 54.545 0.00 0.00 0.00 3.18
4479 7100 0.908198 GAGAGAGGCAATGTGGAGGT 59.092 55.000 0.00 0.00 0.00 3.85
4480 7101 1.138661 GAGAGAGAGGCAATGTGGAGG 59.861 57.143 0.00 0.00 0.00 4.30
4487 7108 3.461085 AGAGAGAGAGAGAGAGAGGCAAT 59.539 47.826 0.00 0.00 0.00 3.56
4518 7143 1.846439 ACTGGGGAGAGAGAGAGAGAG 59.154 57.143 0.00 0.00 0.00 3.20
4519 7144 1.843851 GACTGGGGAGAGAGAGAGAGA 59.156 57.143 0.00 0.00 0.00 3.10
4520 7145 1.133792 GGACTGGGGAGAGAGAGAGAG 60.134 61.905 0.00 0.00 0.00 3.20
4523 7148 1.084866 TTGGACTGGGGAGAGAGAGA 58.915 55.000 0.00 0.00 0.00 3.10
4527 7152 4.080356 CACATATTTTGGACTGGGGAGAGA 60.080 45.833 0.00 0.00 0.00 3.10
4528 7153 4.202441 CACATATTTTGGACTGGGGAGAG 58.798 47.826 0.00 0.00 0.00 3.20
4530 7155 3.968265 ACACATATTTTGGACTGGGGAG 58.032 45.455 0.00 0.00 0.00 4.30
4531 7156 4.085733 CAACACATATTTTGGACTGGGGA 58.914 43.478 0.00 0.00 0.00 4.81
4532 7157 3.831911 ACAACACATATTTTGGACTGGGG 59.168 43.478 0.00 0.00 0.00 4.96
4533 7158 5.467035 AACAACACATATTTTGGACTGGG 57.533 39.130 0.00 0.00 0.00 4.45
4534 7159 9.487790 AAAATAACAACACATATTTTGGACTGG 57.512 29.630 3.46 0.00 39.19 4.00
4568 7193 8.791355 ATAAATGTCGTGGTTTTAGTTCAAAC 57.209 30.769 0.00 0.00 36.12 2.93
4602 7227 8.097038 TGTGAAATGCTACTCAATACTCTTTCT 58.903 33.333 0.00 0.00 0.00 2.52
4606 7231 8.621532 TTTTGTGAAATGCTACTCAATACTCT 57.378 30.769 0.00 0.00 0.00 3.24
4614 7239 4.558860 GGCGATTTTTGTGAAATGCTACTC 59.441 41.667 0.00 0.00 0.00 2.59
4620 7245 4.990426 AGAAAGGGCGATTTTTGTGAAATG 59.010 37.500 0.00 0.00 0.00 2.32
4704 7334 7.275183 TCAGACATGGATAAAATACTCCACTG 58.725 38.462 0.00 0.00 44.06 3.66
4722 7352 7.039714 TGCTCCTCAATTACGTATATCAGACAT 60.040 37.037 0.00 0.00 0.00 3.06
4725 7355 6.894339 TGCTCCTCAATTACGTATATCAGA 57.106 37.500 0.00 0.00 0.00 3.27
4729 7359 7.411486 AGCTATGCTCCTCAATTACGTATAT 57.589 36.000 0.00 0.00 30.62 0.86
4733 7363 4.408182 AAGCTATGCTCCTCAATTACGT 57.592 40.909 0.00 0.00 38.25 3.57
4734 7364 4.811024 TGAAAGCTATGCTCCTCAATTACG 59.189 41.667 0.00 0.00 38.25 3.18
4735 7365 6.297694 CTGAAAGCTATGCTCCTCAATTAC 57.702 41.667 0.00 0.00 38.25 1.89
4772 7402 6.483640 GGCTAGTCTTTTTGAGAGAGAAAACA 59.516 38.462 0.00 0.00 34.31 2.83
4791 7421 6.780031 TGAAGAAGATAGAATAGCAGGCTAGT 59.220 38.462 7.14 3.93 31.45 2.57
4793 7423 6.780031 ACTGAAGAAGATAGAATAGCAGGCTA 59.220 38.462 3.11 3.11 0.00 3.93
4819 7449 3.055675 CCCCATGTGATGCAAACATTCTT 60.056 43.478 14.01 0.00 36.10 2.52
4821 7451 2.896168 CCCCATGTGATGCAAACATTC 58.104 47.619 14.01 0.00 36.10 2.67
4853 7484 7.172875 CAGTTTTATTTTGCATCATTTGGGACA 59.827 33.333 0.00 0.00 0.00 4.02
4854 7485 7.173047 ACAGTTTTATTTTGCATCATTTGGGAC 59.827 33.333 0.00 0.00 0.00 4.46
4920 7573 3.687212 TCCGACCTTATTACAACGACGTA 59.313 43.478 0.00 0.00 0.00 3.57
4924 7577 6.455360 AATAGTCCGACCTTATTACAACGA 57.545 37.500 0.00 0.00 0.00 3.85
4925 7578 5.689068 GGAATAGTCCGACCTTATTACAACG 59.311 44.000 0.00 0.00 33.05 4.10
4940 7593 0.108520 TTGCGTCGGTGGAATAGTCC 60.109 55.000 1.18 1.18 45.21 3.85
4955 7608 6.998258 ATTTCAACTTTTCTTCTGATTGCG 57.002 33.333 0.00 0.00 0.00 4.85
4996 7649 9.653287 TCTCTTGAAAATCATTTCTACGTACAT 57.347 29.630 0.00 0.00 44.32 2.29
5029 7682 7.351981 CGACAAAAATGAGATTCTTGTGTACA 58.648 34.615 0.00 0.00 30.62 2.90
5037 7690 3.820467 TGCACCGACAAAAATGAGATTCT 59.180 39.130 0.00 0.00 0.00 2.40
5038 7691 3.914364 GTGCACCGACAAAAATGAGATTC 59.086 43.478 5.22 0.00 0.00 2.52
5049 7703 1.367471 CTCAGAGGTGCACCGACAA 59.633 57.895 29.68 15.89 42.08 3.18
5080 7734 1.202770 AGCTTCACTAAACGCCAAGGT 60.203 47.619 0.00 0.00 0.00 3.50
5082 7736 3.555518 GAAAGCTTCACTAAACGCCAAG 58.444 45.455 0.00 0.00 0.00 3.61
5089 7743 6.088016 TGTAGTACCGAAAGCTTCACTAAA 57.912 37.500 0.00 0.00 0.00 1.85
5095 7749 2.608090 GGCATGTAGTACCGAAAGCTTC 59.392 50.000 0.00 0.00 0.00 3.86
5119 7773 2.192861 TTGCCCACTTGTTGCCTCG 61.193 57.895 0.00 0.00 0.00 4.63
5120 7774 1.363807 GTTGCCCACTTGTTGCCTC 59.636 57.895 0.00 0.00 0.00 4.70
5142 7796 0.958822 GGCCTTGTACAACAGGTTGG 59.041 55.000 15.84 9.59 44.45 3.77
5147 7801 0.534203 ACCACGGCCTTGTACAACAG 60.534 55.000 8.63 0.14 0.00 3.16
5189 7843 0.595588 CTTGCATGCGTACAAACCCA 59.404 50.000 14.09 0.00 0.00 4.51
5205 7859 1.948635 CGCCAACGGTTTTGCCTTG 60.949 57.895 6.57 0.00 34.97 3.61
5206 7860 1.460273 ATCGCCAACGGTTTTGCCTT 61.460 50.000 6.57 0.00 40.63 4.35
5216 7870 4.506654 AGCAAGTAACTATAATCGCCAACG 59.493 41.667 0.00 0.00 42.01 4.10
5224 7878 8.259049 TGCGTACAAAAGCAAGTAACTATAAT 57.741 30.769 0.00 0.00 40.78 1.28
5282 7936 5.292834 TGAACATTTAAACAACGTACGGTGA 59.707 36.000 37.93 17.11 36.12 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.