Multiple sequence alignment - TraesCS2B01G158400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G158400 chr2B 100.000 3554 0 0 1 3554 132340440 132336887 0.000000e+00 6564.0
1 TraesCS2B01G158400 chr2B 93.893 131 7 1 3414 3544 132335679 132335808 2.800000e-46 196.0
2 TraesCS2B01G158400 chr2D 92.830 3459 141 41 1 3417 80728851 80725458 0.000000e+00 4915.0
3 TraesCS2B01G158400 chr2D 93.382 136 9 0 3418 3553 332508224 332508359 6.020000e-48 202.0
4 TraesCS2B01G158400 chr2D 91.667 144 11 1 3410 3553 332509306 332509164 7.780000e-47 198.0
5 TraesCS2B01G158400 chr2D 72.404 337 70 22 2625 2951 60163758 60163435 6.320000e-13 86.1
6 TraesCS2B01G158400 chr2A 91.367 3417 189 42 44 3417 81091025 81087672 0.000000e+00 4578.0
7 TraesCS2B01G158400 chr2A 93.382 136 9 0 3418 3553 38376910 38377045 6.020000e-48 202.0
8 TraesCS2B01G158400 chr7B 81.639 305 54 1 2625 2927 619093370 619093674 5.890000e-63 252.0
9 TraesCS2B01G158400 chr3A 82.745 255 44 0 2696 2950 528524694 528524440 9.930000e-56 228.0
10 TraesCS2B01G158400 chr3D 84.444 225 35 0 2726 2950 405815098 405814874 4.620000e-54 222.0
11 TraesCS2B01G158400 chr3D 95.588 136 6 0 3418 3553 285171796 285171931 5.970000e-53 219.0
12 TraesCS2B01G158400 chr3D 94.118 136 8 0 3418 3553 582244128 582244263 1.290000e-49 207.0
13 TraesCS2B01G158400 chr7D 95.588 136 6 0 3418 3553 153763533 153763668 5.970000e-53 219.0
14 TraesCS2B01G158400 chr7D 84.431 167 26 0 3233 3399 614377235 614377401 7.890000e-37 165.0
15 TraesCS2B01G158400 chr5D 92.701 137 9 1 3418 3554 555559768 555559903 2.800000e-46 196.0
16 TraesCS2B01G158400 chr1D 92.647 136 10 0 3418 3553 77339238 77339103 2.800000e-46 196.0
17 TraesCS2B01G158400 chr1D 82.474 194 31 3 3208 3399 214836027 214836219 2.190000e-37 167.0
18 TraesCS2B01G158400 chr6B 83.908 87 12 1 2643 2727 5811354 5811440 8.180000e-12 82.4
19 TraesCS2B01G158400 chr3B 82.759 87 15 0 2864 2950 543052435 543052521 1.060000e-10 78.7
20 TraesCS2B01G158400 chr4A 82.353 85 15 0 2864 2948 561102885 561102969 1.370000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G158400 chr2B 132336887 132340440 3553 True 6564 6564 100.000 1 3554 1 chr2B.!!$R1 3553
1 TraesCS2B01G158400 chr2D 80725458 80728851 3393 True 4915 4915 92.830 1 3417 1 chr2D.!!$R2 3416
2 TraesCS2B01G158400 chr2A 81087672 81091025 3353 True 4578 4578 91.367 44 3417 1 chr2A.!!$R1 3373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 246 0.248296 CGAAGAGACGAGGCTACTGC 60.248 60.0 0.00 0.0 35.30 4.40 F
974 1058 0.249073 CAGATACGGCCAAGTCTCGG 60.249 60.0 2.24 0.0 0.00 4.63 F
2018 2129 0.695347 CTTCCAGGAAGGCAAGAGGT 59.305 55.0 20.53 0.0 36.16 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1540 0.096976 GCATTTCCATCCACGACACG 59.903 55.0 0.0 0.0 0.00 4.49 R
2364 2475 0.031449 TCACGTTCATCACACGCAGA 59.969 50.0 0.0 0.0 41.53 4.26 R
3451 3572 0.406750 TGGTAGTTCAGAGGGACGGA 59.593 55.0 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 8.270080 AGCTTGATTATCATCATCAATAGCTG 57.730 34.615 11.47 0.00 42.91 4.24
54 58 6.614160 TCATCAATAGCTGAAATGTGTTGTG 58.386 36.000 0.00 0.00 37.67 3.33
70 82 0.251653 TGTGCTCGTTCCTACTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
104 116 2.030946 GCTCATACAGGTGCGAACATTC 59.969 50.000 0.00 0.00 0.00 2.67
133 145 1.866015 TGGATGTAGAGGGACAGTGG 58.134 55.000 0.00 0.00 31.51 4.00
153 165 0.909610 TAGCAGGGTTGGGTGAGGAG 60.910 60.000 0.00 0.00 0.00 3.69
162 174 1.990614 GGGTGAGGAGGTGGAGACC 60.991 68.421 0.00 0.00 43.52 3.85
171 183 1.979693 GGTGGAGACCAGCGAGACT 60.980 63.158 4.28 0.00 42.21 3.24
209 224 4.338118 TGGACCAACTTGTTCTTGCTTAAG 59.662 41.667 0.00 0.00 0.00 1.85
211 226 3.954258 ACCAACTTGTTCTTGCTTAAGCT 59.046 39.130 26.90 1.54 42.66 3.74
213 228 4.214437 CAACTTGTTCTTGCTTAAGCTCG 58.786 43.478 26.90 17.48 42.66 5.03
214 229 3.728845 ACTTGTTCTTGCTTAAGCTCGA 58.271 40.909 26.90 19.32 42.66 4.04
215 230 4.127171 ACTTGTTCTTGCTTAAGCTCGAA 58.873 39.130 26.90 23.22 42.66 3.71
229 244 3.857217 TCGAAGAGACGAGGCTACT 57.143 52.632 0.00 0.00 37.37 2.57
230 245 1.370609 TCGAAGAGACGAGGCTACTG 58.629 55.000 0.00 0.00 37.37 2.74
231 246 0.248296 CGAAGAGACGAGGCTACTGC 60.248 60.000 0.00 0.00 35.30 4.40
232 247 0.811915 GAAGAGACGAGGCTACTGCA 59.188 55.000 0.00 0.00 41.91 4.41
233 248 1.202582 GAAGAGACGAGGCTACTGCAA 59.797 52.381 0.00 0.00 41.91 4.08
234 249 1.257743 AGAGACGAGGCTACTGCAAA 58.742 50.000 0.00 0.00 41.91 3.68
235 250 1.067495 AGAGACGAGGCTACTGCAAAC 60.067 52.381 0.00 0.00 41.91 2.93
236 251 0.679505 AGACGAGGCTACTGCAAACA 59.320 50.000 0.00 0.00 41.91 2.83
237 252 1.276421 AGACGAGGCTACTGCAAACAT 59.724 47.619 0.00 0.00 41.91 2.71
238 253 2.496070 AGACGAGGCTACTGCAAACATA 59.504 45.455 0.00 0.00 41.91 2.29
239 254 2.603560 GACGAGGCTACTGCAAACATAC 59.396 50.000 0.00 0.00 41.91 2.39
240 255 1.933853 CGAGGCTACTGCAAACATACC 59.066 52.381 0.00 0.00 41.91 2.73
241 256 2.289565 GAGGCTACTGCAAACATACCC 58.710 52.381 0.00 0.00 41.91 3.69
242 257 1.916181 AGGCTACTGCAAACATACCCT 59.084 47.619 0.00 0.00 41.91 4.34
243 258 3.112263 AGGCTACTGCAAACATACCCTA 58.888 45.455 0.00 0.00 41.91 3.53
328 358 0.251341 AAAGACGGGGCTTGAGCATT 60.251 50.000 5.24 0.00 44.36 3.56
337 367 1.444895 CTTGAGCATTTGCACGGCC 60.445 57.895 5.20 0.00 45.16 6.13
501 575 1.614996 GAGATGAGAGGCTCCATCGA 58.385 55.000 26.24 0.00 0.00 3.59
522 596 4.101448 GTGCATGCCCTCCCGACT 62.101 66.667 16.68 0.00 0.00 4.18
641 722 6.519679 AATCCGAGGTATATATACGCAACA 57.480 37.500 15.15 1.90 34.11 3.33
659 740 2.504367 ACAGCGCAAATACTTCCAACT 58.496 42.857 11.47 0.00 0.00 3.16
663 744 2.606795 GCGCAAATACTTCCAACTGCAA 60.607 45.455 0.30 0.00 0.00 4.08
667 748 2.969821 ATACTTCCAACTGCAACCCA 57.030 45.000 0.00 0.00 0.00 4.51
726 807 1.002087 ACGCCAAGTTTCCTCCACTAG 59.998 52.381 0.00 0.00 0.00 2.57
767 848 1.087501 GAATCCAGGAGCAACCGAAC 58.912 55.000 0.00 0.00 44.74 3.95
768 849 0.400213 AATCCAGGAGCAACCGAACA 59.600 50.000 0.00 0.00 44.74 3.18
769 850 0.400213 ATCCAGGAGCAACCGAACAA 59.600 50.000 0.00 0.00 44.74 2.83
783 867 1.581602 CGAACAACAAAGCAACCGTTG 59.418 47.619 6.91 6.91 44.38 4.10
813 897 3.492102 TCCTCACTTTGTTTCAGGGAG 57.508 47.619 0.00 0.00 40.98 4.30
839 923 4.351131 ACCGTTCTCAAAACACAAGAAC 57.649 40.909 4.75 4.75 43.42 3.01
842 926 4.609691 GTTCTCAAAACACAAGAACGGA 57.390 40.909 0.00 0.00 39.45 4.69
843 927 4.340263 GTTCTCAAAACACAAGAACGGAC 58.660 43.478 0.00 0.00 39.45 4.79
844 928 2.605818 TCTCAAAACACAAGAACGGACG 59.394 45.455 0.00 0.00 0.00 4.79
845 929 2.348660 TCAAAACACAAGAACGGACGT 58.651 42.857 0.00 0.00 0.00 4.34
846 930 2.094575 TCAAAACACAAGAACGGACGTG 59.905 45.455 0.00 0.00 35.48 4.49
847 931 0.375803 AAACACAAGAACGGACGTGC 59.624 50.000 0.00 0.00 32.53 5.34
848 932 0.741574 AACACAAGAACGGACGTGCA 60.742 50.000 8.11 0.00 32.53 4.57
849 933 1.151777 ACACAAGAACGGACGTGCAG 61.152 55.000 8.11 2.47 32.53 4.41
850 934 2.244651 ACAAGAACGGACGTGCAGC 61.245 57.895 8.11 0.00 0.00 5.25
865 949 2.281761 AGCGGCACCAACAAGAGG 60.282 61.111 1.45 0.00 0.00 3.69
919 1003 0.319383 CCCAAGCGATCGATCCTCTG 60.319 60.000 21.57 7.62 0.00 3.35
950 1034 2.033294 TACTGCGTGCCATGCCAA 59.967 55.556 6.41 0.00 0.00 4.52
951 1035 1.985447 CTACTGCGTGCCATGCCAAG 61.985 60.000 6.41 0.30 0.00 3.61
952 1036 2.462125 TACTGCGTGCCATGCCAAGA 62.462 55.000 6.41 0.00 0.00 3.02
953 1037 2.596923 TGCGTGCCATGCCAAGAA 60.597 55.556 6.41 0.00 0.00 2.52
974 1058 0.249073 CAGATACGGCCAAGTCTCGG 60.249 60.000 2.24 0.00 0.00 4.63
1128 1218 4.214327 CTCTCCTCGGGCTTCGGC 62.214 72.222 0.75 0.00 39.77 5.54
1326 1419 1.008329 CTCTGTACGACTCGAGGGAC 58.992 60.000 18.41 7.26 0.00 4.46
1447 1540 3.004326 TTTGCACCATGGCGGCATC 62.004 57.895 26.71 11.48 39.03 3.91
1463 1560 1.720805 CATCGTGTCGTGGATGGAAA 58.279 50.000 0.00 0.00 37.09 3.13
1625 1733 0.976590 TGCTCTGCATGCTCTCCTCT 60.977 55.000 20.33 0.00 31.71 3.69
1954 2065 6.772233 TGGATATAGCTTAAAATGCTTGCTCA 59.228 34.615 0.00 0.00 41.46 4.26
1956 2067 7.173907 GGATATAGCTTAAAATGCTTGCTCAGA 59.826 37.037 0.00 0.00 41.46 3.27
1957 2068 4.698583 AGCTTAAAATGCTTGCTCAGAG 57.301 40.909 0.00 0.00 37.52 3.35
1958 2069 4.077822 AGCTTAAAATGCTTGCTCAGAGT 58.922 39.130 0.00 0.00 37.52 3.24
1959 2070 4.155644 AGCTTAAAATGCTTGCTCAGAGTC 59.844 41.667 0.00 0.00 37.52 3.36
1960 2071 4.083110 GCTTAAAATGCTTGCTCAGAGTCA 60.083 41.667 0.00 0.00 0.00 3.41
1961 2072 5.618056 TTAAAATGCTTGCTCAGAGTCAG 57.382 39.130 0.00 0.00 0.00 3.51
1962 2073 3.413846 AAATGCTTGCTCAGAGTCAGA 57.586 42.857 0.00 0.00 0.00 3.27
2018 2129 0.695347 CTTCCAGGAAGGCAAGAGGT 59.305 55.000 20.53 0.00 36.16 3.85
2056 2167 2.442272 GAGGCGGCCTACCAGAGA 60.442 66.667 23.92 0.00 31.76 3.10
2168 2279 1.080230 CACGTCTCCTCTGCTGGTG 60.080 63.158 0.00 0.00 0.00 4.17
2205 2316 5.887598 AGCCATGATTTGCACAGATAAGTAA 59.112 36.000 0.00 0.00 0.00 2.24
2206 2317 6.039047 AGCCATGATTTGCACAGATAAGTAAG 59.961 38.462 0.00 0.00 0.00 2.34
2207 2318 6.183360 GCCATGATTTGCACAGATAAGTAAGT 60.183 38.462 0.00 0.00 0.00 2.24
2233 2344 1.276138 GCTTGTTAATTTGCAGGGGCT 59.724 47.619 0.00 0.00 41.91 5.19
2354 2465 2.278596 CGAATCGGCCGTCGTGAT 60.279 61.111 27.15 7.91 40.32 3.06
2357 2468 3.733344 AATCGGCCGTCGTGATGGG 62.733 63.158 27.15 0.00 40.32 4.00
2363 2474 4.758251 CGTCGTGATGGGCCTGCA 62.758 66.667 4.53 0.00 0.00 4.41
2364 2475 2.124570 GTCGTGATGGGCCTGCAT 60.125 61.111 4.53 0.00 0.00 3.96
2365 2476 2.182842 GTCGTGATGGGCCTGCATC 61.183 63.158 13.47 13.47 0.00 3.91
2366 2477 2.191375 CGTGATGGGCCTGCATCT 59.809 61.111 19.09 0.00 0.00 2.90
2367 2478 2.184830 CGTGATGGGCCTGCATCTG 61.185 63.158 19.09 10.46 0.00 2.90
2368 2479 2.124024 TGATGGGCCTGCATCTGC 60.124 61.111 19.09 0.00 42.50 4.26
2385 2502 0.528684 TGCGTGTGATGAACGTGACA 60.529 50.000 0.00 0.00 42.93 3.58
2394 2511 2.148916 TGAACGTGACACTGATGACC 57.851 50.000 3.68 0.00 0.00 4.02
2400 2517 2.433145 ACACTGATGACCGCGCAG 60.433 61.111 8.75 4.63 35.81 5.18
2555 2672 1.478510 TCTCGCCAGGCTTTCTTAGAG 59.521 52.381 10.54 6.89 0.00 2.43
2709 2829 4.030913 TCCCTTGTTACTCCTATCCACTG 58.969 47.826 0.00 0.00 0.00 3.66
2716 2836 5.724370 TGTTACTCCTATCCACTGGATGAAA 59.276 40.000 19.49 0.13 43.06 2.69
2810 2930 4.373116 GCGAACTGCCGGGTCTGA 62.373 66.667 2.18 0.00 37.76 3.27
2840 2960 1.595993 GGTCCAGCGCACTCTCAGTA 61.596 60.000 11.47 0.00 0.00 2.74
2900 3020 6.947733 ACAGTATTCCACCAATTCATCTTCAA 59.052 34.615 0.00 0.00 0.00 2.69
2905 3025 4.588106 TCCACCAATTCATCTTCAAAGCAA 59.412 37.500 0.00 0.00 0.00 3.91
3022 3142 3.936372 TTCGAAGAAGGTAGTGTGGAG 57.064 47.619 0.00 0.00 45.90 3.86
3125 3246 4.573900 CTCCAGTGATTATGCTCCATACC 58.426 47.826 0.00 0.00 0.00 2.73
3126 3247 4.234550 TCCAGTGATTATGCTCCATACCT 58.765 43.478 0.00 0.00 0.00 3.08
3153 3274 6.959639 AAAAATCTCATTGGTGTACACACT 57.040 33.333 26.51 8.24 45.73 3.55
3182 3303 4.301637 ACAACAATTGGTTCTTCGTTCC 57.698 40.909 10.83 0.00 37.72 3.62
3190 3311 1.603678 GGTTCTTCGTTCCGTGTAGCA 60.604 52.381 0.00 0.00 0.00 3.49
3193 3314 3.853831 TCTTCGTTCCGTGTAGCATAA 57.146 42.857 0.00 0.00 0.00 1.90
3248 3369 9.952188 GAATAAGAGCTTTTGTCACTAAAAACT 57.048 29.630 0.00 0.00 30.89 2.66
3312 3433 8.976471 CATACACTCTCACTCTTATTAGCATTG 58.024 37.037 0.00 0.00 0.00 2.82
3339 3460 5.471556 TCTATTTGAAGTACCGTCCAACA 57.528 39.130 0.00 0.00 0.00 3.33
3394 3515 7.847487 CGTGGATAAAGATTGAACGCTATTTA 58.153 34.615 0.00 0.00 0.00 1.40
3401 3522 7.484035 AAGATTGAACGCTATTTAGATGTCC 57.516 36.000 0.00 0.00 0.00 4.02
3407 3528 1.872237 GCTATTTAGATGTCCGGCGCA 60.872 52.381 10.83 0.00 0.00 6.09
3417 3538 2.250939 TCCGGCGCACAAACTTGAG 61.251 57.895 10.83 0.00 0.00 3.02
3418 3539 2.250939 CCGGCGCACAAACTTGAGA 61.251 57.895 10.83 0.00 0.00 3.27
3419 3540 1.205064 CGGCGCACAAACTTGAGAG 59.795 57.895 10.83 0.00 0.00 3.20
3420 3541 1.498865 CGGCGCACAAACTTGAGAGT 61.499 55.000 10.83 0.00 37.87 3.24
3421 3542 1.508632 GGCGCACAAACTTGAGAGTA 58.491 50.000 10.83 0.00 34.21 2.59
3422 3543 2.076863 GGCGCACAAACTTGAGAGTAT 58.923 47.619 10.83 0.00 34.21 2.12
3423 3544 2.484264 GGCGCACAAACTTGAGAGTATT 59.516 45.455 10.83 0.00 34.21 1.89
3424 3545 3.058224 GGCGCACAAACTTGAGAGTATTT 60.058 43.478 10.83 0.00 34.21 1.40
3425 3546 3.908382 GCGCACAAACTTGAGAGTATTTG 59.092 43.478 0.30 0.00 34.21 2.32
3426 3547 4.554723 GCGCACAAACTTGAGAGTATTTGT 60.555 41.667 0.30 0.00 37.33 2.83
3427 3548 5.140177 CGCACAAACTTGAGAGTATTTGTC 58.860 41.667 0.00 0.00 35.62 3.18
3428 3549 5.277297 CGCACAAACTTGAGAGTATTTGTCA 60.277 40.000 0.00 0.00 35.62 3.58
3429 3550 6.494842 GCACAAACTTGAGAGTATTTGTCAA 58.505 36.000 0.00 0.00 35.62 3.18
3430 3551 6.972328 GCACAAACTTGAGAGTATTTGTCAAA 59.028 34.615 0.00 0.00 38.46 2.69
3431 3552 7.487829 GCACAAACTTGAGAGTATTTGTCAAAA 59.512 33.333 1.31 0.00 38.46 2.44
3432 3553 9.352784 CACAAACTTGAGAGTATTTGTCAAAAA 57.647 29.630 1.31 0.00 38.46 1.94
3453 3574 7.476540 AAAAACTACCACATTAGGGATTTCC 57.523 36.000 0.00 0.00 0.00 3.13
3454 3575 4.417426 ACTACCACATTAGGGATTTCCG 57.583 45.455 0.00 0.00 41.52 4.30
3455 3576 3.778629 ACTACCACATTAGGGATTTCCGT 59.221 43.478 0.00 0.00 41.52 4.69
3456 3577 3.277142 ACCACATTAGGGATTTCCGTC 57.723 47.619 0.00 0.00 41.52 4.79
3457 3578 2.092592 ACCACATTAGGGATTTCCGTCC 60.093 50.000 0.00 0.00 41.52 4.79
3465 3586 2.025589 GGATTTCCGTCCCTCTGAAC 57.974 55.000 0.00 0.00 31.82 3.18
3466 3587 1.555533 GGATTTCCGTCCCTCTGAACT 59.444 52.381 0.00 0.00 31.82 3.01
3467 3588 2.764572 GGATTTCCGTCCCTCTGAACTA 59.235 50.000 0.00 0.00 31.82 2.24
3468 3589 3.430513 GGATTTCCGTCCCTCTGAACTAC 60.431 52.174 0.00 0.00 31.82 2.73
3469 3590 1.553706 TTCCGTCCCTCTGAACTACC 58.446 55.000 0.00 0.00 0.00 3.18
3470 3591 0.406750 TCCGTCCCTCTGAACTACCA 59.593 55.000 0.00 0.00 0.00 3.25
3471 3592 0.531200 CCGTCCCTCTGAACTACCAC 59.469 60.000 0.00 0.00 0.00 4.16
3472 3593 1.254026 CGTCCCTCTGAACTACCACA 58.746 55.000 0.00 0.00 0.00 4.17
3473 3594 1.825474 CGTCCCTCTGAACTACCACAT 59.175 52.381 0.00 0.00 0.00 3.21
3474 3595 2.233922 CGTCCCTCTGAACTACCACATT 59.766 50.000 0.00 0.00 0.00 2.71
3475 3596 3.676324 CGTCCCTCTGAACTACCACATTC 60.676 52.174 0.00 0.00 0.00 2.67
3476 3597 3.260884 GTCCCTCTGAACTACCACATTCA 59.739 47.826 0.00 0.00 33.82 2.57
3477 3598 3.907474 TCCCTCTGAACTACCACATTCAA 59.093 43.478 0.00 0.00 34.52 2.69
3478 3599 4.349636 TCCCTCTGAACTACCACATTCAAA 59.650 41.667 0.00 0.00 34.52 2.69
3479 3600 5.070001 CCCTCTGAACTACCACATTCAAAA 58.930 41.667 0.00 0.00 34.52 2.44
3480 3601 5.534654 CCCTCTGAACTACCACATTCAAAAA 59.465 40.000 0.00 0.00 34.52 1.94
3507 3628 9.574516 AGTGACTGATAACTACCAAAATTTTCT 57.425 29.630 0.00 0.00 0.00 2.52
3530 3651 8.740123 TCTAATTTTGTGACTGAAAACTACCA 57.260 30.769 0.00 0.00 0.00 3.25
3531 3652 8.617809 TCTAATTTTGTGACTGAAAACTACCAC 58.382 33.333 0.00 0.00 0.00 4.16
3532 3653 7.404671 AATTTTGTGACTGAAAACTACCACT 57.595 32.000 0.00 0.00 0.00 4.00
3533 3654 6.827586 TTTTGTGACTGAAAACTACCACTT 57.172 33.333 0.00 0.00 0.00 3.16
3534 3655 6.827586 TTTGTGACTGAAAACTACCACTTT 57.172 33.333 0.00 0.00 0.00 2.66
3535 3656 6.827586 TTGTGACTGAAAACTACCACTTTT 57.172 33.333 0.00 0.00 0.00 2.27
3536 3657 6.189677 TGTGACTGAAAACTACCACTTTTG 57.810 37.500 0.00 0.00 0.00 2.44
3537 3658 5.941058 TGTGACTGAAAACTACCACTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
3538 3659 6.431543 TGTGACTGAAAACTACCACTTTTGAA 59.568 34.615 0.00 0.00 0.00 2.69
3539 3660 7.040340 TGTGACTGAAAACTACCACTTTTGAAA 60.040 33.333 0.00 0.00 0.00 2.69
3540 3661 7.810759 GTGACTGAAAACTACCACTTTTGAAAA 59.189 33.333 0.00 0.00 0.00 2.29
3541 3662 8.361139 TGACTGAAAACTACCACTTTTGAAAAA 58.639 29.630 0.00 0.00 0.00 1.94
3542 3663 9.366216 GACTGAAAACTACCACTTTTGAAAAAT 57.634 29.630 0.00 0.00 0.00 1.82
3543 3664 9.150348 ACTGAAAACTACCACTTTTGAAAAATG 57.850 29.630 0.00 0.00 0.00 2.32
3544 3665 8.485976 TGAAAACTACCACTTTTGAAAAATGG 57.514 30.769 15.76 15.76 35.04 3.16
3545 3666 6.918892 AAACTACCACTTTTGAAAAATGGC 57.081 33.333 17.09 0.00 33.61 4.40
3546 3667 4.956085 ACTACCACTTTTGAAAAATGGCC 58.044 39.130 17.09 0.00 33.61 5.36
3547 3668 3.207265 ACCACTTTTGAAAAATGGCCC 57.793 42.857 17.09 0.00 33.61 5.80
3548 3669 2.142319 CCACTTTTGAAAAATGGCCCG 58.858 47.619 5.13 0.00 0.00 6.13
3549 3670 2.484594 CCACTTTTGAAAAATGGCCCGT 60.485 45.455 5.13 0.00 0.00 5.28
3550 3671 3.202097 CACTTTTGAAAAATGGCCCGTT 58.798 40.909 0.00 0.00 0.00 4.44
3551 3672 3.625313 CACTTTTGAAAAATGGCCCGTTT 59.375 39.130 0.00 0.00 0.00 3.60
3552 3673 4.811557 CACTTTTGAAAAATGGCCCGTTTA 59.188 37.500 0.33 0.00 0.00 2.01
3553 3674 5.294552 CACTTTTGAAAAATGGCCCGTTTAA 59.705 36.000 0.33 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 2.290641 AGGAACGAGCACAACACATTTC 59.709 45.455 0.00 0.00 0.00 2.17
46 50 1.411246 AGTAGGAACGAGCACAACACA 59.589 47.619 0.00 0.00 0.00 3.72
54 58 2.554893 CTCATAGGGAGTAGGAACGAGC 59.445 54.545 0.00 0.00 38.90 5.03
70 82 7.525526 GCACCTGTATGAGCTAAATACCTCATA 60.526 40.741 13.74 6.32 44.58 2.15
104 116 3.432749 CCCTCTACATCCATTCACACCAG 60.433 52.174 0.00 0.00 0.00 4.00
133 145 1.198759 TCCTCACCCAACCCTGCTAC 61.199 60.000 0.00 0.00 0.00 3.58
153 165 0.680280 TAGTCTCGCTGGTCTCCACC 60.680 60.000 0.00 0.00 44.10 4.61
162 174 1.813178 TCACTCAGGTTAGTCTCGCTG 59.187 52.381 0.00 0.00 0.00 5.18
171 183 4.715534 TGGTCCAAAATCACTCAGGTTA 57.284 40.909 0.00 0.00 0.00 2.85
211 226 1.370609 CAGTAGCCTCGTCTCTTCGA 58.629 55.000 0.00 0.00 38.19 3.71
213 228 0.811915 TGCAGTAGCCTCGTCTCTTC 59.188 55.000 0.00 0.00 41.13 2.87
214 229 1.257743 TTGCAGTAGCCTCGTCTCTT 58.742 50.000 0.00 0.00 41.13 2.85
215 230 1.067495 GTTTGCAGTAGCCTCGTCTCT 60.067 52.381 0.00 0.00 41.13 3.10
229 244 6.768861 GTGGTGTTATATAGGGTATGTTTGCA 59.231 38.462 0.00 0.00 0.00 4.08
230 245 6.073440 CGTGGTGTTATATAGGGTATGTTTGC 60.073 42.308 0.00 0.00 0.00 3.68
231 246 7.211573 TCGTGGTGTTATATAGGGTATGTTTG 58.788 38.462 0.00 0.00 0.00 2.93
232 247 7.364149 TCGTGGTGTTATATAGGGTATGTTT 57.636 36.000 0.00 0.00 0.00 2.83
233 248 6.982160 TCGTGGTGTTATATAGGGTATGTT 57.018 37.500 0.00 0.00 0.00 2.71
234 249 6.982160 TTCGTGGTGTTATATAGGGTATGT 57.018 37.500 0.00 0.00 0.00 2.29
235 250 7.211573 TGTTTCGTGGTGTTATATAGGGTATG 58.788 38.462 0.00 0.00 0.00 2.39
236 251 7.364149 TGTTTCGTGGTGTTATATAGGGTAT 57.636 36.000 0.00 0.00 0.00 2.73
237 252 6.788598 TGTTTCGTGGTGTTATATAGGGTA 57.211 37.500 0.00 0.00 0.00 3.69
238 253 5.680594 TGTTTCGTGGTGTTATATAGGGT 57.319 39.130 0.00 0.00 0.00 4.34
239 254 6.202188 GTCATGTTTCGTGGTGTTATATAGGG 59.798 42.308 0.00 0.00 0.00 3.53
240 255 6.074516 CGTCATGTTTCGTGGTGTTATATAGG 60.075 42.308 0.00 0.00 0.00 2.57
241 256 6.693978 TCGTCATGTTTCGTGGTGTTATATAG 59.306 38.462 0.00 0.00 0.00 1.31
242 257 6.562518 TCGTCATGTTTCGTGGTGTTATATA 58.437 36.000 0.00 0.00 0.00 0.86
243 258 5.412640 TCGTCATGTTTCGTGGTGTTATAT 58.587 37.500 0.00 0.00 0.00 0.86
395 429 3.422796 ACGATATCGATAGCCAGGAGTT 58.577 45.455 30.75 1.02 43.02 3.01
522 596 2.444706 AGCTAGATCCGCTGCCCA 60.445 61.111 6.33 0.00 36.15 5.36
641 722 1.200020 GCAGTTGGAAGTATTTGCGCT 59.800 47.619 9.73 0.00 0.00 5.92
659 740 1.971167 GAAGCGATGGTGGGTTGCA 60.971 57.895 0.00 0.00 0.00 4.08
663 744 1.079127 CGAAGAAGCGATGGTGGGT 60.079 57.895 0.00 0.00 0.00 4.51
667 748 2.125106 GCCCGAAGAAGCGATGGT 60.125 61.111 0.00 0.00 0.00 3.55
767 848 3.249917 AGAAACAACGGTTGCTTTGTTG 58.750 40.909 20.20 3.02 40.10 3.33
768 849 3.586100 AGAAACAACGGTTGCTTTGTT 57.414 38.095 20.20 5.09 40.10 2.83
783 867 5.836821 AACAAAGTGAGGAAGGAAGAAAC 57.163 39.130 0.00 0.00 0.00 2.78
785 869 5.505780 TGAAACAAAGTGAGGAAGGAAGAA 58.494 37.500 0.00 0.00 0.00 2.52
813 897 2.096819 TGTGTTTTGAGAACGGTTGCTC 59.903 45.455 0.00 5.82 0.00 4.26
846 930 3.259425 CTCTTGTTGGTGCCGCTGC 62.259 63.158 0.00 0.00 38.26 5.25
847 931 2.620112 CCTCTTGTTGGTGCCGCTG 61.620 63.158 0.00 0.00 0.00 5.18
848 932 2.281761 CCTCTTGTTGGTGCCGCT 60.282 61.111 0.00 0.00 0.00 5.52
849 933 2.281484 TCCTCTTGTTGGTGCCGC 60.281 61.111 0.00 0.00 0.00 6.53
850 934 0.036010 ATCTCCTCTTGTTGGTGCCG 60.036 55.000 0.00 0.00 0.00 5.69
851 935 2.206576 AATCTCCTCTTGTTGGTGCC 57.793 50.000 0.00 0.00 0.00 5.01
852 936 4.590850 AAAAATCTCCTCTTGTTGGTGC 57.409 40.909 0.00 0.00 0.00 5.01
874 958 2.418692 TCGATTGCTGGCGTAGAAAAA 58.581 42.857 0.00 0.00 0.00 1.94
875 959 2.087501 TCGATTGCTGGCGTAGAAAA 57.912 45.000 0.00 0.00 0.00 2.29
876 960 2.201732 GATCGATTGCTGGCGTAGAAA 58.798 47.619 0.00 0.00 0.00 2.52
877 961 1.136110 TGATCGATTGCTGGCGTAGAA 59.864 47.619 0.00 0.00 0.00 2.10
878 962 0.744281 TGATCGATTGCTGGCGTAGA 59.256 50.000 0.00 0.00 0.00 2.59
879 963 1.570813 TTGATCGATTGCTGGCGTAG 58.429 50.000 0.00 0.00 0.00 3.51
880 964 1.663643 GTTTGATCGATTGCTGGCGTA 59.336 47.619 0.00 0.00 0.00 4.42
891 975 1.651987 GATCGCTTGGGTTTGATCGA 58.348 50.000 0.00 0.00 0.00 3.59
931 1015 3.204827 GGCATGGCACGCAGTAGG 61.205 66.667 15.47 0.00 41.61 3.18
937 1021 2.180017 CTTCTTGGCATGGCACGC 59.820 61.111 23.26 0.00 0.00 5.34
950 1034 0.905357 ACTTGGCCGTATCTGCTTCT 59.095 50.000 0.00 0.00 0.00 2.85
951 1035 1.134670 AGACTTGGCCGTATCTGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
952 1036 0.905357 AGACTTGGCCGTATCTGCTT 59.095 50.000 0.00 0.00 0.00 3.91
953 1037 0.461961 GAGACTTGGCCGTATCTGCT 59.538 55.000 7.16 0.00 0.00 4.24
1195 1288 4.353437 GGCGTCTCCGTCCGTTGT 62.353 66.667 0.00 0.00 36.15 3.32
1248 1341 1.006391 GTTAACATGCCGTCGTGATCG 60.006 52.381 0.00 0.00 38.55 3.69
1326 1419 4.695231 ACGTCGACGAACGGGCAG 62.695 66.667 41.52 12.23 46.72 4.85
1447 1540 0.096976 GCATTTCCATCCACGACACG 59.903 55.000 0.00 0.00 0.00 4.49
1453 1550 4.525912 AAAAGAGTGCATTTCCATCCAC 57.474 40.909 0.00 0.00 0.00 4.02
1787 1895 3.755628 GTGGAGCGGACGTGCCTA 61.756 66.667 0.00 0.00 34.65 3.93
1947 2055 3.606595 TGGAATCTGACTCTGAGCAAG 57.393 47.619 4.19 2.76 0.00 4.01
1954 2065 2.842496 TCAAGCCATGGAATCTGACTCT 59.158 45.455 18.40 0.00 0.00 3.24
1956 2067 2.356535 GGTCAAGCCATGGAATCTGACT 60.357 50.000 18.40 0.00 37.17 3.41
1957 2068 2.019984 GGTCAAGCCATGGAATCTGAC 58.980 52.381 18.40 19.26 37.17 3.51
1958 2069 1.918262 AGGTCAAGCCATGGAATCTGA 59.082 47.619 18.40 8.63 40.61 3.27
1959 2070 2.426024 CAAGGTCAAGCCATGGAATCTG 59.574 50.000 18.40 6.19 40.61 2.90
1960 2071 2.731572 CAAGGTCAAGCCATGGAATCT 58.268 47.619 18.40 0.00 40.61 2.40
1961 2072 1.135721 GCAAGGTCAAGCCATGGAATC 59.864 52.381 18.40 0.00 40.61 2.52
1962 2073 1.188863 GCAAGGTCAAGCCATGGAAT 58.811 50.000 18.40 0.00 40.61 3.01
2018 2129 1.078918 CGCTCATGTCCAGCCTCAA 60.079 57.895 0.00 0.00 32.83 3.02
2056 2167 1.601759 GTGCACTGTGTCCATGGCT 60.602 57.895 10.32 0.00 0.00 4.75
2168 2279 3.581024 TCATGGCTGAAATTCACAAGC 57.419 42.857 0.00 0.00 0.00 4.01
2205 2316 6.650390 CCCTGCAAATTAACAAGCAAATTACT 59.350 34.615 0.00 0.00 36.44 2.24
2206 2317 6.128309 CCCCTGCAAATTAACAAGCAAATTAC 60.128 38.462 0.00 0.00 36.44 1.89
2207 2318 5.936956 CCCCTGCAAATTAACAAGCAAATTA 59.063 36.000 0.00 0.00 36.44 1.40
2220 2331 1.279846 CCATTTGAGCCCCTGCAAATT 59.720 47.619 0.00 0.00 41.37 1.82
2221 2332 0.906775 CCATTTGAGCCCCTGCAAAT 59.093 50.000 0.00 0.00 43.38 2.32
2233 2344 2.751436 GCAGCTCCCGCCATTTGA 60.751 61.111 0.00 0.00 36.60 2.69
2337 2448 2.278596 ATCACGACGGCCGATTCG 60.279 61.111 35.90 32.24 41.76 3.34
2357 2468 2.110967 ATCACACGCAGATGCAGGC 61.111 57.895 5.55 0.00 42.21 4.85
2363 2474 1.070821 CACGTTCATCACACGCAGAT 58.929 50.000 0.00 0.00 41.53 2.90
2364 2475 0.031449 TCACGTTCATCACACGCAGA 59.969 50.000 0.00 0.00 41.53 4.26
2365 2476 0.161658 GTCACGTTCATCACACGCAG 59.838 55.000 0.00 0.00 41.53 5.18
2366 2477 0.528684 TGTCACGTTCATCACACGCA 60.529 50.000 0.00 0.00 41.53 5.24
2367 2478 0.111266 GTGTCACGTTCATCACACGC 60.111 55.000 0.00 0.00 41.53 5.34
2368 2479 1.190103 CAGTGTCACGTTCATCACACG 59.810 52.381 0.00 0.00 43.28 4.49
2385 2502 2.182791 CTCTGCGCGGTCATCAGT 59.817 61.111 17.37 0.00 0.00 3.41
2555 2672 2.510768 ACACGTCAGTCAAGAGAACC 57.489 50.000 0.00 0.00 0.00 3.62
2659 2779 4.497300 CCAATGGTGGCTTCAAACTTATG 58.503 43.478 0.00 0.00 38.35 1.90
2690 2810 5.363868 TCATCCAGTGGATAGGAGTAACAAG 59.636 44.000 24.40 7.76 40.98 3.16
2709 2829 3.003689 CGACAATATGCACCCTTTCATCC 59.996 47.826 0.00 0.00 0.00 3.51
2716 2836 1.531748 CCCCGACAATATGCACCCT 59.468 57.895 0.00 0.00 0.00 4.34
2793 2913 4.373116 TCAGACCCGGCAGTTCGC 62.373 66.667 0.00 0.00 41.28 4.70
2810 2930 1.447643 GCTGGACCAGTGTGTGACT 59.552 57.895 22.58 0.00 33.43 3.41
2900 3020 3.871594 GGTCGATGCATTAGTACTTGCTT 59.128 43.478 18.00 12.86 39.60 3.91
2905 3025 3.458189 GCAAGGTCGATGCATTAGTACT 58.542 45.455 0.00 0.00 43.29 2.73
2953 3073 0.577269 GATGATGAACGCGTGTAGGC 59.423 55.000 14.98 2.09 0.00 3.93
3125 3246 7.040755 TGTGTACACCAATGAGATTTTTACCAG 60.041 37.037 22.91 0.00 0.00 4.00
3126 3247 6.773200 TGTGTACACCAATGAGATTTTTACCA 59.227 34.615 22.91 0.00 0.00 3.25
3153 3274 3.692101 AGAACCAATTGTTGTTCACGACA 59.308 39.130 21.92 0.00 37.29 4.35
3182 3303 5.062433 TCACGTTTATGGTTTATGCTACACG 59.938 40.000 0.00 0.00 0.00 4.49
3248 3369 9.639563 TCCATTTGCCTATGTAGAAATGATTTA 57.360 29.630 12.30 0.00 37.80 1.40
3312 3433 6.103997 TGGACGGTACTTCAAATAGATTCAC 58.896 40.000 0.00 0.00 0.00 3.18
3394 3515 2.031919 TTTGTGCGCCGGACATCT 59.968 55.556 13.35 0.00 0.00 2.90
3401 3522 1.205064 CTCTCAAGTTTGTGCGCCG 59.795 57.895 4.18 0.00 0.00 6.46
3429 3550 6.152154 CGGAAATCCCTAATGTGGTAGTTTTT 59.848 38.462 0.00 0.00 0.00 1.94
3430 3551 5.650703 CGGAAATCCCTAATGTGGTAGTTTT 59.349 40.000 0.00 0.00 0.00 2.43
3431 3552 5.190677 CGGAAATCCCTAATGTGGTAGTTT 58.809 41.667 0.00 0.00 0.00 2.66
3432 3553 4.226620 ACGGAAATCCCTAATGTGGTAGTT 59.773 41.667 0.00 0.00 0.00 2.24
3433 3554 3.778629 ACGGAAATCCCTAATGTGGTAGT 59.221 43.478 0.00 0.00 0.00 2.73
3434 3555 4.377897 GACGGAAATCCCTAATGTGGTAG 58.622 47.826 0.00 0.00 0.00 3.18
3435 3556 3.135167 GGACGGAAATCCCTAATGTGGTA 59.865 47.826 0.00 0.00 31.94 3.25
3436 3557 2.092592 GGACGGAAATCCCTAATGTGGT 60.093 50.000 0.00 0.00 31.94 4.16
3437 3558 2.572290 GGACGGAAATCCCTAATGTGG 58.428 52.381 0.00 0.00 31.94 4.17
3446 3567 1.555533 AGTTCAGAGGGACGGAAATCC 59.444 52.381 0.00 0.00 34.84 3.01
3447 3568 3.430513 GGTAGTTCAGAGGGACGGAAATC 60.431 52.174 0.00 0.00 34.84 2.17
3448 3569 2.500504 GGTAGTTCAGAGGGACGGAAAT 59.499 50.000 0.00 0.00 34.84 2.17
3449 3570 1.897802 GGTAGTTCAGAGGGACGGAAA 59.102 52.381 0.00 0.00 34.84 3.13
3450 3571 1.203087 TGGTAGTTCAGAGGGACGGAA 60.203 52.381 0.00 0.00 0.00 4.30
3451 3572 0.406750 TGGTAGTTCAGAGGGACGGA 59.593 55.000 0.00 0.00 0.00 4.69
3452 3573 0.531200 GTGGTAGTTCAGAGGGACGG 59.469 60.000 0.00 0.00 0.00 4.79
3453 3574 1.254026 TGTGGTAGTTCAGAGGGACG 58.746 55.000 0.00 0.00 0.00 4.79
3454 3575 3.260884 TGAATGTGGTAGTTCAGAGGGAC 59.739 47.826 0.00 0.00 31.24 4.46
3455 3576 3.516586 TGAATGTGGTAGTTCAGAGGGA 58.483 45.455 0.00 0.00 31.24 4.20
3456 3577 3.981071 TGAATGTGGTAGTTCAGAGGG 57.019 47.619 0.00 0.00 31.24 4.30
3457 3578 6.633500 TTTTTGAATGTGGTAGTTCAGAGG 57.367 37.500 0.00 0.00 35.91 3.69
3481 3602 9.574516 AGAAAATTTTGGTAGTTATCAGTCACT 57.425 29.630 8.47 0.00 0.00 3.41
3504 3625 9.179909 TGGTAGTTTTCAGTCACAAAATTAGAA 57.820 29.630 0.00 0.00 0.00 2.10
3505 3626 8.617809 GTGGTAGTTTTCAGTCACAAAATTAGA 58.382 33.333 0.00 0.00 0.00 2.10
3506 3627 8.621286 AGTGGTAGTTTTCAGTCACAAAATTAG 58.379 33.333 0.00 0.00 0.00 1.73
3507 3628 8.514330 AGTGGTAGTTTTCAGTCACAAAATTA 57.486 30.769 0.00 0.00 0.00 1.40
3508 3629 7.404671 AGTGGTAGTTTTCAGTCACAAAATT 57.595 32.000 0.00 0.00 0.00 1.82
3509 3630 7.404671 AAGTGGTAGTTTTCAGTCACAAAAT 57.595 32.000 0.00 0.00 0.00 1.82
3510 3631 6.827586 AAGTGGTAGTTTTCAGTCACAAAA 57.172 33.333 0.00 0.00 0.00 2.44
3511 3632 6.827586 AAAGTGGTAGTTTTCAGTCACAAA 57.172 33.333 0.00 0.00 0.00 2.83
3512 3633 6.431543 TCAAAAGTGGTAGTTTTCAGTCACAA 59.568 34.615 0.00 0.00 28.88 3.33
3513 3634 5.941058 TCAAAAGTGGTAGTTTTCAGTCACA 59.059 36.000 0.00 0.00 28.88 3.58
3514 3635 6.431198 TCAAAAGTGGTAGTTTTCAGTCAC 57.569 37.500 0.00 0.00 28.88 3.67
3515 3636 7.455641 TTTCAAAAGTGGTAGTTTTCAGTCA 57.544 32.000 0.00 0.00 28.88 3.41
3516 3637 8.751302 TTTTTCAAAAGTGGTAGTTTTCAGTC 57.249 30.769 0.00 0.00 28.88 3.51
3517 3638 9.150348 CATTTTTCAAAAGTGGTAGTTTTCAGT 57.850 29.630 0.00 0.00 28.88 3.41
3518 3639 8.603181 CCATTTTTCAAAAGTGGTAGTTTTCAG 58.397 33.333 14.82 0.00 28.88 3.02
3519 3640 7.065204 GCCATTTTTCAAAAGTGGTAGTTTTCA 59.935 33.333 21.82 0.00 33.24 2.69
3520 3641 7.406553 GCCATTTTTCAAAAGTGGTAGTTTTC 58.593 34.615 21.82 3.86 33.24 2.29
3521 3642 6.317642 GGCCATTTTTCAAAAGTGGTAGTTTT 59.682 34.615 21.82 0.00 33.24 2.43
3522 3643 5.820423 GGCCATTTTTCAAAAGTGGTAGTTT 59.180 36.000 21.82 0.00 33.24 2.66
3523 3644 5.364778 GGCCATTTTTCAAAAGTGGTAGTT 58.635 37.500 21.82 0.00 33.24 2.24
3524 3645 4.202315 GGGCCATTTTTCAAAAGTGGTAGT 60.202 41.667 21.82 0.00 33.24 2.73
3525 3646 4.314961 GGGCCATTTTTCAAAAGTGGTAG 58.685 43.478 21.82 1.92 33.24 3.18
3526 3647 3.243907 CGGGCCATTTTTCAAAAGTGGTA 60.244 43.478 21.82 0.00 33.24 3.25
3527 3648 2.484594 CGGGCCATTTTTCAAAAGTGGT 60.485 45.455 21.82 0.00 33.24 4.16
3528 3649 2.142319 CGGGCCATTTTTCAAAAGTGG 58.858 47.619 17.98 17.98 33.53 4.00
3529 3650 2.832563 ACGGGCCATTTTTCAAAAGTG 58.167 42.857 4.39 0.00 0.00 3.16
3530 3651 3.552132 AACGGGCCATTTTTCAAAAGT 57.448 38.095 4.39 0.00 0.00 2.66
3531 3652 5.993106 TTAAACGGGCCATTTTTCAAAAG 57.007 34.783 1.65 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.