Multiple sequence alignment - TraesCS2B01G158300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G158300 chr2B 100.000 4604 0 0 1 4604 132276795 132281398 0.000000e+00 8503.0
1 TraesCS2B01G158300 chr2B 89.352 216 23 0 3856 4071 132293482 132293697 5.870000e-69 272.0
2 TraesCS2B01G158300 chr2B 93.923 181 8 3 311 490 650478327 650478149 2.110000e-68 270.0
3 TraesCS2B01G158300 chr2B 93.407 182 9 3 311 491 391452329 391452508 2.730000e-67 267.0
4 TraesCS2B01G158300 chr2B 93.820 178 9 2 311 488 474281061 474280886 2.730000e-67 267.0
5 TraesCS2B01G158300 chr2B 92.473 186 11 3 309 492 529593990 529593806 3.530000e-66 263.0
6 TraesCS2B01G158300 chr2D 94.705 1813 50 12 2261 4071 80657961 80659729 0.000000e+00 2774.0
7 TraesCS2B01G158300 chr2D 95.752 918 14 10 1287 2202 80657065 80657959 0.000000e+00 1456.0
8 TraesCS2B01G158300 chr2D 92.698 808 47 6 2996 3800 80665159 80665957 0.000000e+00 1155.0
9 TraesCS2B01G158300 chr2D 89.474 494 8 6 817 1289 80654821 80655291 6.640000e-163 584.0
10 TraesCS2B01G158300 chr2D 90.351 228 21 1 3845 4071 80666275 80666502 9.680000e-77 298.0
11 TraesCS2B01G158300 chr2D 96.622 148 5 0 496 643 80653039 80653186 3.560000e-61 246.0
12 TraesCS2B01G158300 chr2D 91.018 167 3 1 640 794 80654384 80654550 1.000000e-51 215.0
13 TraesCS2B01G158300 chr2A 92.716 1414 48 20 810 2190 81064648 81066039 0.000000e+00 1989.0
14 TraesCS2B01G158300 chr2A 95.309 938 31 8 2261 3194 81066067 81066995 0.000000e+00 1476.0
15 TraesCS2B01G158300 chr2A 96.484 711 21 3 2906 3614 81063350 81064058 0.000000e+00 1171.0
16 TraesCS2B01G158300 chr2A 96.285 323 10 1 2865 3185 81075933 81076255 3.150000e-146 529.0
17 TraesCS2B01G158300 chr2A 95.699 93 3 1 636 728 81064511 81064602 1.030000e-31 148.0
18 TraesCS2B01G158300 chr5B 98.324 537 9 0 4068 4604 255681295 255680759 0.000000e+00 942.0
19 TraesCS2B01G158300 chr5B 89.572 537 50 3 4070 4604 148503660 148503128 0.000000e+00 676.0
20 TraesCS2B01G158300 chr5B 81.575 635 106 10 1227 1857 693034812 693034185 8.830000e-142 514.0
21 TraesCS2B01G158300 chr5B 79.237 708 115 23 1170 1858 693012016 693011322 9.020000e-127 464.0
22 TraesCS2B01G158300 chr5B 93.514 185 8 3 311 492 34558165 34558348 5.870000e-69 272.0
23 TraesCS2B01G158300 chr5B 91.111 45 4 0 1942 1986 79814281 79814237 1.380000e-05 62.1
24 TraesCS2B01G158300 chr7B 95.896 536 22 0 4069 4604 590950516 590951051 0.000000e+00 869.0
25 TraesCS2B01G158300 chr7B 93.407 182 10 2 311 491 663485616 663485796 7.590000e-68 268.0
26 TraesCS2B01G158300 chr7B 92.021 188 11 4 309 494 80090433 80090618 1.270000e-65 261.0
27 TraesCS2B01G158300 chr7B 91.758 182 14 1 310 490 587966682 587966863 7.650000e-63 252.0
28 TraesCS2B01G158300 chr3D 94.590 536 21 5 4071 4604 141380808 141381337 0.000000e+00 822.0
29 TraesCS2B01G158300 chr3D 76.884 584 108 19 1171 1736 62116225 62115651 5.790000e-79 305.0
30 TraesCS2B01G158300 chr3D 77.855 289 34 13 533 795 64110862 64110578 7.980000e-33 152.0
31 TraesCS2B01G158300 chr3D 92.308 104 8 0 4183 4286 549730658 549730761 1.030000e-31 148.0
32 TraesCS2B01G158300 chr3B 89.259 540 50 6 4068 4604 603624730 603625264 0.000000e+00 669.0
33 TraesCS2B01G158300 chr7A 88.290 538 55 5 4070 4604 220547093 220546561 5.020000e-179 638.0
34 TraesCS2B01G158300 chr7A 77.727 651 131 11 1238 1880 22666182 22666826 2.010000e-103 387.0
35 TraesCS2B01G158300 chr7A 77.054 645 127 19 1227 1863 23354783 23355414 7.330000e-93 351.0
36 TraesCS2B01G158300 chr7A 79.603 353 68 4 2325 2675 23896178 23896528 2.750000e-62 250.0
37 TraesCS2B01G158300 chr7A 79.603 353 68 4 2325 2675 24279555 24279905 2.750000e-62 250.0
38 TraesCS2B01G158300 chr7A 79.320 353 69 4 2325 2675 24095833 24096183 1.280000e-60 244.0
39 TraesCS2B01G158300 chr6B 89.121 478 47 5 4069 4544 123198254 123197780 1.430000e-164 590.0
40 TraesCS2B01G158300 chr6B 94.737 38 1 1 4555 4592 349462878 349462842 1.790000e-04 58.4
41 TraesCS2B01G158300 chr1B 75.152 1320 259 47 2289 3574 540138181 540139465 1.450000e-154 556.0
42 TraesCS2B01G158300 chr1A 74.905 1319 257 53 2290 3571 497751915 497753196 6.780000e-148 534.0
43 TraesCS2B01G158300 chr4A 81.476 637 104 12 1227 1858 612048054 612048681 1.140000e-140 510.0
44 TraesCS2B01G158300 chr4A 74.832 1041 228 29 2325 3354 579527655 579526638 1.520000e-119 440.0
45 TraesCS2B01G158300 chr4A 77.901 629 135 4 1237 1863 704302339 704301713 5.590000e-104 388.0
46 TraesCS2B01G158300 chr4A 79.320 353 69 4 2325 2675 706498249 706497899 1.280000e-60 244.0
47 TraesCS2B01G158300 chr4A 81.690 71 12 1 1161 1231 612047835 612047904 1.790000e-04 58.4
48 TraesCS2B01G158300 chr5D 79.692 714 119 19 1161 1858 558946727 558947430 4.140000e-135 492.0
49 TraesCS2B01G158300 chr5D 81.383 564 93 9 1233 1789 558930094 558930652 2.530000e-122 449.0
50 TraesCS2B01G158300 chr5D 81.481 81 11 3 1909 1986 72911427 72911348 3.850000e-06 63.9
51 TraesCS2B01G158300 chr4B 76.012 988 201 30 2325 3300 32971852 32972815 3.220000e-131 479.0
52 TraesCS2B01G158300 chr4B 75.267 1031 214 33 2325 3342 34540948 34541950 1.950000e-123 453.0
53 TraesCS2B01G158300 chr4B 94.505 182 9 1 310 491 565207081 565206901 3.510000e-71 279.0
54 TraesCS2B01G158300 chr4D 76.045 981 195 33 2331 3300 21695216 21694265 1.500000e-129 473.0
55 TraesCS2B01G158300 chr4D 75.152 990 204 35 2325 3299 22573901 22574863 1.180000e-115 427.0
56 TraesCS2B01G158300 chr4D 91.346 104 9 0 4183 4286 443717448 443717551 4.800000e-30 143.0
57 TraesCS2B01G158300 chr4D 89.873 79 8 0 4070 4148 443717369 443717447 8.150000e-18 102.0
58 TraesCS2B01G158300 chrUn 77.778 630 134 5 1237 1863 50554634 50554008 2.600000e-102 383.0
59 TraesCS2B01G158300 chrUn 77.778 630 134 5 1237 1863 313747270 313746644 2.600000e-102 383.0
60 TraesCS2B01G158300 chr5A 77.743 647 127 15 1227 1866 41953872 41954508 9.350000e-102 381.0
61 TraesCS2B01G158300 chr3A 80.000 345 69 0 2331 2675 693380324 693379980 5.910000e-64 255.0
62 TraesCS2B01G158300 chr3A 81.295 139 22 4 4067 4203 472399186 472399322 4.870000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G158300 chr2B 132276795 132281398 4603 False 8503.0 8503 100.0000 1 4604 1 chr2B.!!$F1 4603
1 TraesCS2B01G158300 chr2D 80653039 80659729 6690 False 1055.0 2774 93.5142 496 4071 5 chr2D.!!$F1 3575
2 TraesCS2B01G158300 chr2D 80665159 80666502 1343 False 726.5 1155 91.5245 2996 4071 2 chr2D.!!$F2 1075
3 TraesCS2B01G158300 chr2A 81063350 81066995 3645 False 1196.0 1989 95.0520 636 3614 4 chr2A.!!$F2 2978
4 TraesCS2B01G158300 chr5B 255680759 255681295 536 True 942.0 942 98.3240 4068 4604 1 chr5B.!!$R3 536
5 TraesCS2B01G158300 chr5B 148503128 148503660 532 True 676.0 676 89.5720 4070 4604 1 chr5B.!!$R2 534
6 TraesCS2B01G158300 chr5B 693034185 693034812 627 True 514.0 514 81.5750 1227 1857 1 chr5B.!!$R5 630
7 TraesCS2B01G158300 chr5B 693011322 693012016 694 True 464.0 464 79.2370 1170 1858 1 chr5B.!!$R4 688
8 TraesCS2B01G158300 chr7B 590950516 590951051 535 False 869.0 869 95.8960 4069 4604 1 chr7B.!!$F3 535
9 TraesCS2B01G158300 chr3D 141380808 141381337 529 False 822.0 822 94.5900 4071 4604 1 chr3D.!!$F1 533
10 TraesCS2B01G158300 chr3D 62115651 62116225 574 True 305.0 305 76.8840 1171 1736 1 chr3D.!!$R1 565
11 TraesCS2B01G158300 chr3B 603624730 603625264 534 False 669.0 669 89.2590 4068 4604 1 chr3B.!!$F1 536
12 TraesCS2B01G158300 chr7A 220546561 220547093 532 True 638.0 638 88.2900 4070 4604 1 chr7A.!!$R1 534
13 TraesCS2B01G158300 chr7A 22666182 22666826 644 False 387.0 387 77.7270 1238 1880 1 chr7A.!!$F1 642
14 TraesCS2B01G158300 chr7A 23354783 23355414 631 False 351.0 351 77.0540 1227 1863 1 chr7A.!!$F2 636
15 TraesCS2B01G158300 chr1B 540138181 540139465 1284 False 556.0 556 75.1520 2289 3574 1 chr1B.!!$F1 1285
16 TraesCS2B01G158300 chr1A 497751915 497753196 1281 False 534.0 534 74.9050 2290 3571 1 chr1A.!!$F1 1281
17 TraesCS2B01G158300 chr4A 579526638 579527655 1017 True 440.0 440 74.8320 2325 3354 1 chr4A.!!$R1 1029
18 TraesCS2B01G158300 chr4A 704301713 704302339 626 True 388.0 388 77.9010 1237 1863 1 chr4A.!!$R2 626
19 TraesCS2B01G158300 chr4A 612047835 612048681 846 False 284.2 510 81.5830 1161 1858 2 chr4A.!!$F1 697
20 TraesCS2B01G158300 chr5D 558946727 558947430 703 False 492.0 492 79.6920 1161 1858 1 chr5D.!!$F2 697
21 TraesCS2B01G158300 chr5D 558930094 558930652 558 False 449.0 449 81.3830 1233 1789 1 chr5D.!!$F1 556
22 TraesCS2B01G158300 chr4B 32971852 32972815 963 False 479.0 479 76.0120 2325 3300 1 chr4B.!!$F1 975
23 TraesCS2B01G158300 chr4B 34540948 34541950 1002 False 453.0 453 75.2670 2325 3342 1 chr4B.!!$F2 1017
24 TraesCS2B01G158300 chr4D 21694265 21695216 951 True 473.0 473 76.0450 2331 3300 1 chr4D.!!$R1 969
25 TraesCS2B01G158300 chr4D 22573901 22574863 962 False 427.0 427 75.1520 2325 3299 1 chr4D.!!$F1 974
26 TraesCS2B01G158300 chrUn 50554008 50554634 626 True 383.0 383 77.7780 1237 1863 1 chrUn.!!$R1 626
27 TraesCS2B01G158300 chrUn 313746644 313747270 626 True 383.0 383 77.7780 1237 1863 1 chrUn.!!$R2 626
28 TraesCS2B01G158300 chr5A 41953872 41954508 636 False 381.0 381 77.7430 1227 1866 1 chr5A.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.036388 ACGTGTCTAGCAATGGGTGG 60.036 55.000 0.00 0.00 0.00 4.61 F
461 462 0.112412 ACCCACCCTGTAAAAGCCTG 59.888 55.000 0.00 0.00 0.00 4.85 F
492 493 0.246910 TACGTGTAGCATTGCCGGAA 59.753 50.000 5.05 0.00 0.00 4.30 F
983 2635 0.547553 GCCGGGACCCCAAATTACTA 59.452 55.000 4.46 0.00 35.37 1.82 F
2299 6006 0.392998 GCGGGGTGATGTGATTGTCT 60.393 55.000 0.00 0.00 0.00 3.41 F
2309 6016 1.069091 TGTGATTGTCTTGCATGCACG 60.069 47.619 22.58 19.83 35.56 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 5437 0.392998 AGCGGCATCCTGAATTTCGT 60.393 50.000 1.45 0.00 0.00 3.85 R
2280 5987 0.392998 AGACAATCACATCACCCCGC 60.393 55.000 0.00 0.00 0.00 6.13 R
2299 6006 0.457443 TTGTTGGAACGTGCATGCAA 59.543 45.000 24.58 1.86 0.00 4.08 R
2466 6173 1.895238 GGCCCTAGAGCGTAACACA 59.105 57.895 0.00 0.00 0.00 3.72 R
3599 7340 1.103803 GATCTGCCTACGGTCTCACA 58.896 55.000 0.00 0.00 0.00 3.58 R
3791 7533 6.798476 ACACGTTATACATCATTCGTATACGG 59.202 38.462 24.18 9.36 40.29 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.331132 GCAGAGGAGCCACAGTTGC 61.331 63.158 0.00 0.00 0.00 4.17
25 26 2.031516 CAGAGGAGCCACAGTTGCG 61.032 63.158 0.00 0.00 0.00 4.85
27 28 2.029844 GAGGAGCCACAGTTGCGTC 61.030 63.158 0.00 0.00 0.00 5.19
28 29 2.031163 GGAGCCACAGTTGCGTCT 59.969 61.111 0.00 0.00 0.00 4.18
29 30 2.320587 GGAGCCACAGTTGCGTCTG 61.321 63.158 6.44 6.44 40.80 3.51
30 31 2.959357 GAGCCACAGTTGCGTCTGC 61.959 63.158 7.68 0.00 38.84 4.26
31 32 4.030452 GCCACAGTTGCGTCTGCC 62.030 66.667 7.68 0.00 41.78 4.85
33 34 3.357079 CACAGTTGCGTCTGCCCC 61.357 66.667 7.68 0.00 41.78 5.80
35 36 2.360350 CAGTTGCGTCTGCCCCAT 60.360 61.111 0.00 0.00 41.78 4.00
37 38 2.672996 GTTGCGTCTGCCCCATGT 60.673 61.111 0.00 0.00 41.78 3.21
38 39 1.376683 GTTGCGTCTGCCCCATGTA 60.377 57.895 0.00 0.00 41.78 2.29
39 40 1.376683 TTGCGTCTGCCCCATGTAC 60.377 57.895 0.00 0.00 41.78 2.90
40 41 2.513897 GCGTCTGCCCCATGTACC 60.514 66.667 0.00 0.00 33.98 3.34
41 42 2.189521 CGTCTGCCCCATGTACCC 59.810 66.667 0.00 0.00 0.00 3.69
43 44 1.224592 GTCTGCCCCATGTACCCAG 59.775 63.158 0.00 0.00 0.00 4.45
44 45 1.082019 TCTGCCCCATGTACCCAGA 59.918 57.895 0.00 0.00 0.00 3.86
46 47 2.193248 GCCCCATGTACCCAGAGC 59.807 66.667 0.00 0.00 0.00 4.09
47 48 2.919043 CCCCATGTACCCAGAGCC 59.081 66.667 0.00 0.00 0.00 4.70
48 49 2.757124 CCCCATGTACCCAGAGCCC 61.757 68.421 0.00 0.00 0.00 5.19
49 50 2.505982 CCATGTACCCAGAGCCCG 59.494 66.667 0.00 0.00 0.00 6.13
50 51 2.505982 CATGTACCCAGAGCCCGG 59.494 66.667 0.00 0.00 0.00 5.73
51 52 2.063979 CATGTACCCAGAGCCCGGA 61.064 63.158 0.73 0.00 0.00 5.14
52 53 1.306654 ATGTACCCAGAGCCCGGAA 60.307 57.895 0.73 0.00 0.00 4.30
53 54 1.623542 ATGTACCCAGAGCCCGGAAC 61.624 60.000 0.73 0.00 0.00 3.62
67 68 3.429043 GGAACGAAGATGGTACGCA 57.571 52.632 0.00 0.00 0.00 5.24
68 69 1.935933 GGAACGAAGATGGTACGCAT 58.064 50.000 0.00 0.00 0.00 4.73
69 70 1.859080 GGAACGAAGATGGTACGCATC 59.141 52.381 13.46 13.46 0.00 3.91
70 71 1.859080 GAACGAAGATGGTACGCATCC 59.141 52.381 16.22 5.94 0.00 3.51
71 72 0.104304 ACGAAGATGGTACGCATCCC 59.896 55.000 16.22 10.33 0.00 3.85
72 73 0.600255 CGAAGATGGTACGCATCCCC 60.600 60.000 16.22 10.09 0.00 4.81
76 77 3.146726 ATGGTACGCATCCCCGACG 62.147 63.158 0.00 0.00 0.00 5.12
78 79 4.501714 GTACGCATCCCCGACGCA 62.502 66.667 0.00 0.00 0.00 5.24
80 81 3.993376 TACGCATCCCCGACGCAAC 62.993 63.158 0.00 0.00 0.00 4.17
82 83 3.053291 GCATCCCCGACGCAACAA 61.053 61.111 0.00 0.00 0.00 2.83
83 84 3.039202 GCATCCCCGACGCAACAAG 62.039 63.158 0.00 0.00 0.00 3.16
85 86 0.390603 CATCCCCGACGCAACAAGTA 60.391 55.000 0.00 0.00 0.00 2.24
87 88 2.388232 CCCCGACGCAACAAGTAGC 61.388 63.158 0.00 0.00 0.00 3.58
96 97 3.872560 GCAACAAGTAGCGTAGTGTTT 57.127 42.857 0.00 0.00 31.98 2.83
97 98 4.205323 GCAACAAGTAGCGTAGTGTTTT 57.795 40.909 0.00 0.00 31.98 2.43
101 102 6.483687 CAACAAGTAGCGTAGTGTTTTCTTT 58.516 36.000 0.00 0.00 31.98 2.52
102 103 6.044512 ACAAGTAGCGTAGTGTTTTCTTTG 57.955 37.500 0.00 0.00 0.00 2.77
103 104 4.727235 AGTAGCGTAGTGTTTTCTTTGC 57.273 40.909 0.00 0.00 0.00 3.68
105 106 4.755123 AGTAGCGTAGTGTTTTCTTTGCAT 59.245 37.500 0.00 0.00 0.00 3.96
106 107 3.888934 AGCGTAGTGTTTTCTTTGCATG 58.111 40.909 0.00 0.00 0.00 4.06
107 108 2.979813 GCGTAGTGTTTTCTTTGCATGG 59.020 45.455 0.00 0.00 0.00 3.66
109 110 4.606961 CGTAGTGTTTTCTTTGCATGGTT 58.393 39.130 0.00 0.00 0.00 3.67
110 111 5.040635 CGTAGTGTTTTCTTTGCATGGTTT 58.959 37.500 0.00 0.00 0.00 3.27
111 112 5.051774 CGTAGTGTTTTCTTTGCATGGTTTG 60.052 40.000 0.00 0.00 0.00 2.93
129 130 8.937884 CATGGTTTGCATGATTTTAAGATTTCA 58.062 29.630 0.00 0.00 32.09 2.69
130 131 8.309163 TGGTTTGCATGATTTTAAGATTTCAC 57.691 30.769 0.00 0.00 0.00 3.18
131 132 7.930325 TGGTTTGCATGATTTTAAGATTTCACA 59.070 29.630 0.00 0.00 0.00 3.58
132 133 8.938906 GGTTTGCATGATTTTAAGATTTCACAT 58.061 29.630 0.00 0.00 0.00 3.21
144 145 6.764308 AAGATTTCACATATGAGGTGTTGG 57.236 37.500 10.38 0.00 35.83 3.77
145 146 5.195940 AGATTTCACATATGAGGTGTTGGG 58.804 41.667 10.38 0.00 35.83 4.12
146 147 4.649267 TTTCACATATGAGGTGTTGGGA 57.351 40.909 10.38 0.00 35.83 4.37
149 150 4.780815 TCACATATGAGGTGTTGGGATTC 58.219 43.478 10.38 0.00 37.52 2.52
150 151 4.227073 TCACATATGAGGTGTTGGGATTCA 59.773 41.667 10.38 0.00 37.52 2.57
151 152 4.577693 CACATATGAGGTGTTGGGATTCAG 59.422 45.833 10.38 0.00 0.00 3.02
153 154 3.641434 ATGAGGTGTTGGGATTCAGAG 57.359 47.619 0.00 0.00 0.00 3.35
154 155 2.619931 TGAGGTGTTGGGATTCAGAGA 58.380 47.619 0.00 0.00 0.00 3.10
155 156 2.978978 TGAGGTGTTGGGATTCAGAGAA 59.021 45.455 0.00 0.00 0.00 2.87
157 158 4.006319 GAGGTGTTGGGATTCAGAGAAAG 58.994 47.826 0.00 0.00 0.00 2.62
158 159 3.395941 AGGTGTTGGGATTCAGAGAAAGT 59.604 43.478 0.00 0.00 0.00 2.66
159 160 4.141158 AGGTGTTGGGATTCAGAGAAAGTT 60.141 41.667 0.00 0.00 0.00 2.66
160 161 5.073144 AGGTGTTGGGATTCAGAGAAAGTTA 59.927 40.000 0.00 0.00 0.00 2.24
163 164 5.997746 TGTTGGGATTCAGAGAAAGTTAGTG 59.002 40.000 0.00 0.00 0.00 2.74
164 165 4.579869 TGGGATTCAGAGAAAGTTAGTGC 58.420 43.478 0.00 0.00 0.00 4.40
165 166 4.287067 TGGGATTCAGAGAAAGTTAGTGCT 59.713 41.667 0.00 0.00 0.00 4.40
166 167 4.873259 GGGATTCAGAGAAAGTTAGTGCTC 59.127 45.833 0.00 0.00 0.00 4.26
167 168 5.482908 GGATTCAGAGAAAGTTAGTGCTCA 58.517 41.667 0.00 0.00 0.00 4.26
168 169 5.580297 GGATTCAGAGAAAGTTAGTGCTCAG 59.420 44.000 0.00 0.00 0.00 3.35
169 170 4.527509 TCAGAGAAAGTTAGTGCTCAGG 57.472 45.455 0.00 0.00 0.00 3.86
170 171 4.152647 TCAGAGAAAGTTAGTGCTCAGGA 58.847 43.478 0.00 0.00 0.00 3.86
171 172 4.588951 TCAGAGAAAGTTAGTGCTCAGGAA 59.411 41.667 0.00 0.00 0.00 3.36
173 174 3.654414 AGAAAGTTAGTGCTCAGGAACG 58.346 45.455 0.00 0.00 0.00 3.95
174 175 1.797025 AAGTTAGTGCTCAGGAACGC 58.203 50.000 0.00 0.00 0.00 4.84
175 176 0.388649 AGTTAGTGCTCAGGAACGCG 60.389 55.000 3.53 3.53 0.00 6.01
176 177 0.666577 GTTAGTGCTCAGGAACGCGT 60.667 55.000 5.58 5.58 0.00 6.01
177 178 0.388134 TTAGTGCTCAGGAACGCGTC 60.388 55.000 14.44 6.14 0.00 5.19
178 179 1.520600 TAGTGCTCAGGAACGCGTCA 61.521 55.000 14.44 0.09 0.00 4.35
179 180 2.355837 TGCTCAGGAACGCGTCAC 60.356 61.111 14.44 8.87 0.00 3.67
201 202 2.190756 GGGACCCACTAGAGACACG 58.809 63.158 5.33 0.00 0.00 4.49
202 203 0.611340 GGGACCCACTAGAGACACGT 60.611 60.000 5.33 0.00 0.00 4.49
205 206 1.199558 GACCCACTAGAGACACGTGTC 59.800 57.143 35.83 35.83 45.08 3.67
216 217 0.685097 ACACGTGTCTAGCAATGGGT 59.315 50.000 17.22 0.00 0.00 4.51
217 218 1.078709 CACGTGTCTAGCAATGGGTG 58.921 55.000 7.58 0.00 0.00 4.61
218 219 0.036388 ACGTGTCTAGCAATGGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
219 220 0.036388 CGTGTCTAGCAATGGGTGGT 60.036 55.000 0.00 0.00 41.93 4.16
220 221 1.610624 CGTGTCTAGCAATGGGTGGTT 60.611 52.381 0.00 0.00 39.22 3.67
221 222 2.514803 GTGTCTAGCAATGGGTGGTTT 58.485 47.619 0.00 0.00 39.22 3.27
222 223 2.228822 GTGTCTAGCAATGGGTGGTTTG 59.771 50.000 0.00 0.00 39.22 2.93
223 224 1.202348 GTCTAGCAATGGGTGGTTTGC 59.798 52.381 0.00 0.00 46.68 3.68
225 226 2.733945 GCAATGGGTGGTTTGCGT 59.266 55.556 0.00 0.00 38.88 5.24
226 227 1.664333 GCAATGGGTGGTTTGCGTG 60.664 57.895 0.00 0.00 38.88 5.34
227 228 1.006337 CAATGGGTGGTTTGCGTGG 60.006 57.895 0.00 0.00 0.00 4.94
228 229 2.866726 AATGGGTGGTTTGCGTGGC 61.867 57.895 0.00 0.00 0.00 5.01
241 242 3.414700 GTGGCCGCGTGAGACAAG 61.415 66.667 4.92 0.00 0.00 3.16
248 249 3.767230 CGTGAGACAAGCGTGGCG 61.767 66.667 4.26 0.00 38.10 5.69
268 269 4.028490 TGGCCGGCGGAAGTTGAT 62.028 61.111 33.44 0.00 0.00 2.57
269 270 3.202706 GGCCGGCGGAAGTTGATC 61.203 66.667 33.44 8.98 0.00 2.92
270 271 3.202706 GCCGGCGGAAGTTGATCC 61.203 66.667 33.44 4.02 36.05 3.36
278 279 2.025589 GGAAGTTGATCCGAAGACCC 57.974 55.000 0.00 0.00 0.00 4.46
279 280 1.278127 GGAAGTTGATCCGAAGACCCA 59.722 52.381 0.00 0.00 0.00 4.51
280 281 2.347731 GAAGTTGATCCGAAGACCCAC 58.652 52.381 0.00 0.00 0.00 4.61
281 282 1.348064 AGTTGATCCGAAGACCCACA 58.652 50.000 0.00 0.00 0.00 4.17
282 283 1.276421 AGTTGATCCGAAGACCCACAG 59.724 52.381 0.00 0.00 0.00 3.66
283 284 0.613260 TTGATCCGAAGACCCACAGG 59.387 55.000 0.00 0.00 40.04 4.00
284 285 1.153349 GATCCGAAGACCCACAGGC 60.153 63.158 0.00 0.00 36.11 4.85
286 287 1.201429 ATCCGAAGACCCACAGGCTT 61.201 55.000 0.00 0.00 36.11 4.35
287 288 1.672356 CCGAAGACCCACAGGCTTG 60.672 63.158 0.00 0.00 36.11 4.01
289 290 1.456287 GAAGACCCACAGGCTTGGT 59.544 57.895 0.00 7.27 36.11 3.67
291 292 2.836154 GACCCACAGGCTTGGTCA 59.164 61.111 18.14 0.00 46.29 4.02
292 293 1.600916 GACCCACAGGCTTGGTCAC 60.601 63.158 18.14 5.87 46.29 3.67
295 296 1.149174 CCACAGGCTTGGTCACTGT 59.851 57.895 0.00 0.00 45.62 3.55
297 298 0.664761 CACAGGCTTGGTCACTGTTG 59.335 55.000 0.00 0.00 42.38 3.33
298 299 0.466189 ACAGGCTTGGTCACTGTTGG 60.466 55.000 0.00 0.00 42.38 3.77
300 301 0.466189 AGGCTTGGTCACTGTTGGTG 60.466 55.000 0.00 0.00 46.60 4.17
313 314 5.975693 ACTGTTGGTGAAGAGAAAACAAA 57.024 34.783 0.00 0.00 30.90 2.83
315 316 6.754193 ACTGTTGGTGAAGAGAAAACAAAAA 58.246 32.000 0.00 0.00 30.90 1.94
316 317 7.386059 ACTGTTGGTGAAGAGAAAACAAAAAT 58.614 30.769 0.00 0.00 30.90 1.82
317 318 7.331687 ACTGTTGGTGAAGAGAAAACAAAAATG 59.668 33.333 0.00 0.00 30.90 2.32
318 319 6.091986 TGTTGGTGAAGAGAAAACAAAAATGC 59.908 34.615 0.00 0.00 0.00 3.56
319 320 5.976458 TGGTGAAGAGAAAACAAAAATGCT 58.024 33.333 0.00 0.00 0.00 3.79
321 322 7.202526 TGGTGAAGAGAAAACAAAAATGCTAG 58.797 34.615 0.00 0.00 0.00 3.42
323 324 7.379797 GGTGAAGAGAAAACAAAAATGCTAGAC 59.620 37.037 0.00 0.00 0.00 2.59
324 325 7.915397 GTGAAGAGAAAACAAAAATGCTAGACA 59.085 33.333 0.00 0.00 0.00 3.41
325 326 8.632679 TGAAGAGAAAACAAAAATGCTAGACAT 58.367 29.630 0.00 0.00 42.30 3.06
327 328 9.899226 AAGAGAAAACAAAAATGCTAGACATAC 57.101 29.630 0.00 0.00 38.34 2.39
328 329 9.066892 AGAGAAAACAAAAATGCTAGACATACA 57.933 29.630 0.00 0.00 38.34 2.29
358 359 9.923143 ATTTATAAAAGCCTGTAAACTGTTTCC 57.077 29.630 9.38 0.00 0.00 3.13
359 360 6.969993 ATAAAAGCCTGTAAACTGTTTCCA 57.030 33.333 9.38 3.58 0.00 3.53
360 361 5.869649 AAAAGCCTGTAAACTGTTTCCAT 57.130 34.783 9.38 0.00 0.00 3.41
361 362 5.453567 AAAGCCTGTAAACTGTTTCCATC 57.546 39.130 9.38 0.28 0.00 3.51
362 363 4.373156 AGCCTGTAAACTGTTTCCATCT 57.627 40.909 9.38 2.52 0.00 2.90
363 364 5.499004 AGCCTGTAAACTGTTTCCATCTA 57.501 39.130 9.38 0.00 0.00 1.98
365 366 5.705905 AGCCTGTAAACTGTTTCCATCTAAC 59.294 40.000 9.38 1.31 0.00 2.34
367 368 6.016610 GCCTGTAAACTGTTTCCATCTAACAA 60.017 38.462 9.38 0.00 35.28 2.83
368 369 7.360361 CCTGTAAACTGTTTCCATCTAACAAC 58.640 38.462 9.38 0.00 35.28 3.32
369 370 7.266922 TGTAAACTGTTTCCATCTAACAACC 57.733 36.000 9.38 0.00 35.28 3.77
370 371 6.829298 TGTAAACTGTTTCCATCTAACAACCA 59.171 34.615 9.38 0.00 35.28 3.67
371 372 6.783708 AAACTGTTTCCATCTAACAACCAA 57.216 33.333 0.00 0.00 35.28 3.67
372 373 6.976934 AACTGTTTCCATCTAACAACCAAT 57.023 33.333 0.00 0.00 35.28 3.16
373 374 6.331369 ACTGTTTCCATCTAACAACCAATG 57.669 37.500 0.00 0.00 35.28 2.82
375 376 6.016276 ACTGTTTCCATCTAACAACCAATGAC 60.016 38.462 0.00 0.00 35.28 3.06
378 379 6.968263 TTCCATCTAACAACCAATGACAAA 57.032 33.333 0.00 0.00 0.00 2.83
379 380 6.325919 TCCATCTAACAACCAATGACAAAC 57.674 37.500 0.00 0.00 0.00 2.93
380 381 5.242838 TCCATCTAACAACCAATGACAAACC 59.757 40.000 0.00 0.00 0.00 3.27
381 382 5.243730 CCATCTAACAACCAATGACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
382 383 6.381801 CATCTAACAACCAATGACAAACCTC 58.618 40.000 0.00 0.00 0.00 3.85
384 385 6.126409 TCTAACAACCAATGACAAACCTCTT 58.874 36.000 0.00 0.00 0.00 2.85
385 386 4.918810 ACAACCAATGACAAACCTCTTC 57.081 40.909 0.00 0.00 0.00 2.87
386 387 4.536765 ACAACCAATGACAAACCTCTTCT 58.463 39.130 0.00 0.00 0.00 2.85
387 388 4.580580 ACAACCAATGACAAACCTCTTCTC 59.419 41.667 0.00 0.00 0.00 2.87
388 389 3.756117 ACCAATGACAAACCTCTTCTCC 58.244 45.455 0.00 0.00 0.00 3.71
389 390 3.084786 CCAATGACAAACCTCTTCTCCC 58.915 50.000 0.00 0.00 0.00 4.30
390 391 3.084786 CAATGACAAACCTCTTCTCCCC 58.915 50.000 0.00 0.00 0.00 4.81
392 393 1.699634 TGACAAACCTCTTCTCCCCTG 59.300 52.381 0.00 0.00 0.00 4.45
393 394 1.978580 GACAAACCTCTTCTCCCCTGA 59.021 52.381 0.00 0.00 0.00 3.86
394 395 2.573915 GACAAACCTCTTCTCCCCTGAT 59.426 50.000 0.00 0.00 0.00 2.90
395 396 2.989571 ACAAACCTCTTCTCCCCTGATT 59.010 45.455 0.00 0.00 0.00 2.57
396 397 3.399305 ACAAACCTCTTCTCCCCTGATTT 59.601 43.478 0.00 0.00 0.00 2.17
397 398 4.140924 ACAAACCTCTTCTCCCCTGATTTT 60.141 41.667 0.00 0.00 0.00 1.82
399 400 3.260205 ACCTCTTCTCCCCTGATTTTCA 58.740 45.455 0.00 0.00 0.00 2.69
409 410 0.972471 CTGATTTTCAGGGGGTGGGC 60.972 60.000 0.00 0.00 40.71 5.36
410 411 1.685765 GATTTTCAGGGGGTGGGCC 60.686 63.158 0.00 0.00 0.00 5.80
424 425 3.224324 GGCCGTCCCGCTCATCTA 61.224 66.667 0.00 0.00 0.00 1.98
425 426 2.574955 GGCCGTCCCGCTCATCTAT 61.575 63.158 0.00 0.00 0.00 1.98
426 427 1.367840 GCCGTCCCGCTCATCTATT 59.632 57.895 0.00 0.00 0.00 1.73
428 429 0.319900 CCGTCCCGCTCATCTATTGG 60.320 60.000 0.00 0.00 0.00 3.16
429 430 0.946221 CGTCCCGCTCATCTATTGGC 60.946 60.000 0.00 0.00 0.00 4.52
430 431 0.603975 GTCCCGCTCATCTATTGGCC 60.604 60.000 0.00 0.00 0.00 5.36
431 432 1.053835 TCCCGCTCATCTATTGGCCA 61.054 55.000 0.00 0.00 0.00 5.36
433 434 1.546323 CCCGCTCATCTATTGGCCAAT 60.546 52.381 32.59 32.59 34.93 3.16
434 435 1.538512 CCGCTCATCTATTGGCCAATG 59.461 52.381 36.21 25.70 32.50 2.82
435 436 2.497138 CGCTCATCTATTGGCCAATGA 58.503 47.619 36.21 29.19 32.50 2.57
438 439 4.202040 CGCTCATCTATTGGCCAATGAAAA 60.202 41.667 36.21 18.52 32.50 2.29
440 441 5.163478 GCTCATCTATTGGCCAATGAAAACT 60.163 40.000 36.21 15.45 32.50 2.66
441 442 6.039717 GCTCATCTATTGGCCAATGAAAACTA 59.960 38.462 36.21 16.74 32.50 2.24
442 443 7.416664 GCTCATCTATTGGCCAATGAAAACTAA 60.417 37.037 36.21 16.03 32.50 2.24
443 444 7.771183 TCATCTATTGGCCAATGAAAACTAAC 58.229 34.615 36.21 0.00 32.50 2.34
444 445 6.524101 TCTATTGGCCAATGAAAACTAACC 57.476 37.500 36.21 0.00 32.50 2.85
445 446 4.551702 ATTGGCCAATGAAAACTAACCC 57.448 40.909 30.17 0.00 0.00 4.11
446 447 2.964209 TGGCCAATGAAAACTAACCCA 58.036 42.857 0.61 0.00 0.00 4.51
447 448 2.630580 TGGCCAATGAAAACTAACCCAC 59.369 45.455 0.61 0.00 0.00 4.61
448 449 2.028476 GGCCAATGAAAACTAACCCACC 60.028 50.000 0.00 0.00 0.00 4.61
450 451 3.506398 CCAATGAAAACTAACCCACCCT 58.494 45.455 0.00 0.00 0.00 4.34
451 452 3.258123 CCAATGAAAACTAACCCACCCTG 59.742 47.826 0.00 0.00 0.00 4.45
452 453 3.895041 CAATGAAAACTAACCCACCCTGT 59.105 43.478 0.00 0.00 0.00 4.00
453 454 5.074115 CAATGAAAACTAACCCACCCTGTA 58.926 41.667 0.00 0.00 0.00 2.74
456 457 5.516984 TGAAAACTAACCCACCCTGTAAAA 58.483 37.500 0.00 0.00 0.00 1.52
457 458 5.595133 TGAAAACTAACCCACCCTGTAAAAG 59.405 40.000 0.00 0.00 0.00 2.27
458 459 3.150458 ACTAACCCACCCTGTAAAAGC 57.850 47.619 0.00 0.00 0.00 3.51
461 462 0.112412 ACCCACCCTGTAAAAGCCTG 59.888 55.000 0.00 0.00 0.00 4.85
462 463 1.250840 CCCACCCTGTAAAAGCCTGC 61.251 60.000 0.00 0.00 0.00 4.85
463 464 0.539438 CCACCCTGTAAAAGCCTGCA 60.539 55.000 0.00 0.00 0.00 4.41
464 465 1.327303 CACCCTGTAAAAGCCTGCAA 58.673 50.000 0.00 0.00 0.00 4.08
465 466 1.686052 CACCCTGTAAAAGCCTGCAAA 59.314 47.619 0.00 0.00 0.00 3.68
466 467 1.686587 ACCCTGTAAAAGCCTGCAAAC 59.313 47.619 0.00 0.00 0.00 2.93
468 469 2.288395 CCCTGTAAAAGCCTGCAAACTG 60.288 50.000 0.00 0.00 0.00 3.16
469 470 2.362077 CCTGTAAAAGCCTGCAAACTGT 59.638 45.455 0.00 0.00 0.00 3.55
470 471 3.181476 CCTGTAAAAGCCTGCAAACTGTT 60.181 43.478 0.00 0.00 0.00 3.16
471 472 4.432712 CTGTAAAAGCCTGCAAACTGTTT 58.567 39.130 0.00 0.00 0.00 2.83
472 473 4.180057 TGTAAAAGCCTGCAAACTGTTTG 58.820 39.130 24.98 24.98 43.44 2.93
475 476 3.436700 AAGCCTGCAAACTGTTTGTAC 57.563 42.857 28.14 16.32 42.56 2.90
476 477 1.333619 AGCCTGCAAACTGTTTGTACG 59.666 47.619 28.14 20.31 42.56 3.67
478 479 2.715268 CCTGCAAACTGTTTGTACGTG 58.285 47.619 28.14 15.57 42.56 4.49
480 481 3.310227 CCTGCAAACTGTTTGTACGTGTA 59.690 43.478 28.14 6.68 42.56 2.90
482 483 3.242478 TGCAAACTGTTTGTACGTGTAGC 60.242 43.478 28.14 14.81 42.56 3.58
484 485 4.553938 GCAAACTGTTTGTACGTGTAGCAT 60.554 41.667 28.14 0.00 42.56 3.79
486 487 4.725556 ACTGTTTGTACGTGTAGCATTG 57.274 40.909 0.00 0.00 0.00 2.82
487 488 3.059188 ACTGTTTGTACGTGTAGCATTGC 60.059 43.478 0.00 0.00 0.00 3.56
489 490 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
490 491 0.738063 TGTACGTGTAGCATTGCCGG 60.738 55.000 4.70 0.00 0.00 6.13
491 492 0.458889 GTACGTGTAGCATTGCCGGA 60.459 55.000 5.05 0.00 0.00 5.14
492 493 0.246910 TACGTGTAGCATTGCCGGAA 59.753 50.000 5.05 0.00 0.00 4.30
493 494 1.019278 ACGTGTAGCATTGCCGGAAG 61.019 55.000 5.05 0.00 0.00 3.46
494 495 0.739462 CGTGTAGCATTGCCGGAAGA 60.739 55.000 5.05 0.00 0.00 2.87
505 506 2.006888 TGCCGGAAGAGAAAAATAGCG 58.993 47.619 5.05 0.00 0.00 4.26
555 556 1.332375 CTCACGGCTGCTAGTACTCTC 59.668 57.143 0.00 0.00 0.00 3.20
559 560 0.664224 GGCTGCTAGTACTCTCCGTC 59.336 60.000 0.00 0.00 0.00 4.79
604 605 3.728221 CGAGTGTCTTATCATCTTCTGCG 59.272 47.826 0.00 0.00 0.00 5.18
795 2199 4.773117 GGTGCGACGTCTCCGACC 62.773 72.222 14.70 6.64 37.88 4.79
796 2200 4.034258 GTGCGACGTCTCCGACCA 62.034 66.667 14.70 0.00 37.88 4.02
797 2201 3.060000 TGCGACGTCTCCGACCAT 61.060 61.111 14.70 0.00 37.88 3.55
799 2203 2.579787 CGACGTCTCCGACCATGC 60.580 66.667 14.70 0.00 37.88 4.06
800 2204 2.202756 GACGTCTCCGACCATGCC 60.203 66.667 8.70 0.00 37.88 4.40
801 2205 4.129737 ACGTCTCCGACCATGCCG 62.130 66.667 0.00 0.00 37.88 5.69
809 2213 4.465512 GACCATGCCGCGCACAAG 62.466 66.667 8.75 1.42 43.04 3.16
967 2619 2.574212 GCGATTTTGCGACTGCCG 60.574 61.111 0.00 0.00 41.78 5.69
981 2633 1.000646 TGCCGGGACCCCAAATTAC 60.001 57.895 4.46 0.00 35.37 1.89
982 2634 1.305287 GCCGGGACCCCAAATTACT 59.695 57.895 4.46 0.00 35.37 2.24
983 2635 0.547553 GCCGGGACCCCAAATTACTA 59.452 55.000 4.46 0.00 35.37 1.82
1796 5437 1.144691 TTCCAAGACCACCATGGACA 58.855 50.000 21.47 0.00 42.71 4.02
2016 5682 3.965694 AGCCAGAAAGATGAAGCAGATT 58.034 40.909 0.00 0.00 0.00 2.40
2017 5683 3.695060 AGCCAGAAAGATGAAGCAGATTG 59.305 43.478 0.00 0.00 0.00 2.67
2018 5684 3.693085 GCCAGAAAGATGAAGCAGATTGA 59.307 43.478 0.00 0.00 0.00 2.57
2019 5685 4.438472 GCCAGAAAGATGAAGCAGATTGAC 60.438 45.833 0.00 0.00 0.00 3.18
2020 5686 4.698780 CCAGAAAGATGAAGCAGATTGACA 59.301 41.667 0.00 0.00 0.00 3.58
2021 5687 5.182570 CCAGAAAGATGAAGCAGATTGACAA 59.817 40.000 0.00 0.00 0.00 3.18
2022 5688 6.084925 CAGAAAGATGAAGCAGATTGACAAC 58.915 40.000 0.00 0.00 0.00 3.32
2023 5689 5.182760 AGAAAGATGAAGCAGATTGACAACC 59.817 40.000 0.00 0.00 0.00 3.77
2024 5690 4.025040 AGATGAAGCAGATTGACAACCA 57.975 40.909 0.00 0.00 0.00 3.67
2025 5691 4.401022 AGATGAAGCAGATTGACAACCAA 58.599 39.130 0.00 0.00 39.41 3.67
2026 5692 3.988379 TGAAGCAGATTGACAACCAAC 57.012 42.857 0.00 0.00 37.63 3.77
2027 5693 3.554934 TGAAGCAGATTGACAACCAACT 58.445 40.909 0.00 0.00 37.63 3.16
2028 5694 4.713553 TGAAGCAGATTGACAACCAACTA 58.286 39.130 0.00 0.00 37.63 2.24
2029 5695 4.515191 TGAAGCAGATTGACAACCAACTAC 59.485 41.667 0.00 0.00 37.63 2.73
2030 5696 4.357918 AGCAGATTGACAACCAACTACT 57.642 40.909 0.00 0.00 37.63 2.57
2031 5697 5.483685 AGCAGATTGACAACCAACTACTA 57.516 39.130 0.00 0.00 37.63 1.82
2032 5698 5.482908 AGCAGATTGACAACCAACTACTAG 58.517 41.667 0.00 0.00 37.63 2.57
2033 5699 5.012148 AGCAGATTGACAACCAACTACTAGT 59.988 40.000 0.00 0.00 37.63 2.57
2034 5700 6.210784 AGCAGATTGACAACCAACTACTAGTA 59.789 38.462 1.89 1.89 37.63 1.82
2035 5701 6.531948 GCAGATTGACAACCAACTACTAGTAG 59.468 42.308 25.30 25.30 37.63 2.57
2036 5702 7.577046 GCAGATTGACAACCAACTACTAGTAGA 60.577 40.741 31.93 9.57 37.63 2.59
2054 5741 5.084519 AGTAGATGACAACACTACTCCCAA 58.915 41.667 11.78 0.00 41.64 4.12
2187 5894 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2188 5895 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2283 5990 8.250538 ACTTGGTAAAATGATTTTTATTGCGG 57.749 30.769 8.60 0.00 39.00 5.69
2285 5992 6.109359 TGGTAAAATGATTTTTATTGCGGGG 58.891 36.000 8.60 0.00 39.00 5.73
2288 5995 5.413309 AAATGATTTTTATTGCGGGGTGA 57.587 34.783 0.00 0.00 0.00 4.02
2289 5996 5.612725 AATGATTTTTATTGCGGGGTGAT 57.387 34.783 0.00 0.00 0.00 3.06
2290 5997 4.383850 TGATTTTTATTGCGGGGTGATG 57.616 40.909 0.00 0.00 0.00 3.07
2291 5998 3.766591 TGATTTTTATTGCGGGGTGATGT 59.233 39.130 0.00 0.00 0.00 3.06
2292 5999 3.584406 TTTTTATTGCGGGGTGATGTG 57.416 42.857 0.00 0.00 0.00 3.21
2293 6000 2.498644 TTTATTGCGGGGTGATGTGA 57.501 45.000 0.00 0.00 0.00 3.58
2299 6006 0.392998 GCGGGGTGATGTGATTGTCT 60.393 55.000 0.00 0.00 0.00 3.41
2306 6013 3.176708 GTGATGTGATTGTCTTGCATGC 58.823 45.455 11.82 11.82 0.00 4.06
2307 6014 2.820787 TGATGTGATTGTCTTGCATGCA 59.179 40.909 18.46 18.46 0.00 3.96
2308 6015 2.710220 TGTGATTGTCTTGCATGCAC 57.290 45.000 22.58 10.11 34.30 4.57
2309 6016 1.069091 TGTGATTGTCTTGCATGCACG 60.069 47.619 22.58 19.83 35.56 5.34
2323 6030 4.156739 TGCATGCACGTTCCAACAATTATA 59.843 37.500 18.46 0.00 0.00 0.98
3356 7090 3.924686 GTCACACAATCCGGTTAGTACAG 59.075 47.826 0.00 0.00 0.00 2.74
3387 7121 7.575332 TCTTTTCTTTACGCATAATTTTGGC 57.425 32.000 0.00 0.00 0.00 4.52
3492 7233 4.892345 ACAATGCTCTCTGAGATGCTAGTA 59.108 41.667 21.33 7.19 0.00 1.82
3806 7548 3.121944 GCTTCTGCCGTATACGAATGATG 59.878 47.826 26.37 19.48 43.02 3.07
3931 7968 8.613613 ATGTATGCAAAAATATACAACGTGTG 57.386 30.769 0.00 0.00 41.52 3.82
4585 8630 1.601248 CCTTTCCTTCCTCCATCCCT 58.399 55.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.031516 CGCAACTGTGGCTCCTCTG 61.032 63.158 5.50 0.00 0.00 3.35
8 9 2.345244 CGCAACTGTGGCTCCTCT 59.655 61.111 5.50 0.00 0.00 3.69
11 12 2.031163 AGACGCAACTGTGGCTCC 59.969 61.111 5.50 0.00 40.49 4.70
14 15 4.030452 GGCAGACGCAACTGTGGC 62.030 66.667 0.00 0.00 41.24 5.01
15 16 3.357079 GGGCAGACGCAACTGTGG 61.357 66.667 8.54 0.00 41.24 4.17
16 17 3.357079 GGGGCAGACGCAACTGTG 61.357 66.667 8.54 0.00 41.24 3.66
17 18 3.196207 ATGGGGCAGACGCAACTGT 62.196 57.895 0.00 0.00 45.79 3.55
18 19 2.360350 ATGGGGCAGACGCAACTG 60.360 61.111 0.00 3.21 45.79 3.16
19 20 1.836999 TACATGGGGCAGACGCAACT 61.837 55.000 0.00 0.00 45.79 3.16
24 25 2.189521 GGGTACATGGGGCAGACG 59.810 66.667 0.00 0.00 0.00 4.18
25 26 1.224592 CTGGGTACATGGGGCAGAC 59.775 63.158 0.00 0.00 0.00 3.51
27 28 1.528824 CTCTGGGTACATGGGGCAG 59.471 63.158 0.00 0.00 0.00 4.85
28 29 2.679342 GCTCTGGGTACATGGGGCA 61.679 63.158 0.00 0.00 0.00 5.36
29 30 2.193248 GCTCTGGGTACATGGGGC 59.807 66.667 0.00 0.00 0.00 5.80
30 31 2.757124 GGGCTCTGGGTACATGGGG 61.757 68.421 0.00 0.00 0.00 4.96
31 32 2.919043 GGGCTCTGGGTACATGGG 59.081 66.667 0.00 0.00 0.00 4.00
33 34 1.622607 TTCCGGGCTCTGGGTACATG 61.623 60.000 0.00 0.00 0.00 3.21
35 36 2.120940 TTCCGGGCTCTGGGTACA 59.879 61.111 0.00 0.00 0.00 2.90
37 38 3.072468 CGTTCCGGGCTCTGGGTA 61.072 66.667 0.00 0.00 0.00 3.69
39 40 3.665675 CTTCGTTCCGGGCTCTGGG 62.666 68.421 0.00 0.00 0.00 4.45
40 41 1.961180 ATCTTCGTTCCGGGCTCTGG 61.961 60.000 0.00 0.00 0.00 3.86
41 42 0.807667 CATCTTCGTTCCGGGCTCTG 60.808 60.000 0.00 0.00 0.00 3.35
43 44 1.521681 CCATCTTCGTTCCGGGCTC 60.522 63.158 0.00 0.00 0.00 4.70
44 45 0.974010 TACCATCTTCGTTCCGGGCT 60.974 55.000 0.00 0.00 0.00 5.19
46 47 0.526954 CGTACCATCTTCGTTCCGGG 60.527 60.000 0.00 0.00 0.00 5.73
47 48 1.143969 GCGTACCATCTTCGTTCCGG 61.144 60.000 0.00 0.00 0.00 5.14
48 49 0.457166 TGCGTACCATCTTCGTTCCG 60.457 55.000 0.00 0.00 0.00 4.30
49 50 1.859080 GATGCGTACCATCTTCGTTCC 59.141 52.381 13.85 0.00 45.58 3.62
58 59 2.819550 GTCGGGGATGCGTACCAT 59.180 61.111 10.08 0.00 36.70 3.55
59 60 3.829044 CGTCGGGGATGCGTACCA 61.829 66.667 10.08 0.00 0.00 3.25
61 62 3.993376 TTGCGTCGGGGATGCGTAC 62.993 63.158 5.46 0.00 46.39 3.67
62 63 3.761140 TTGCGTCGGGGATGCGTA 61.761 61.111 5.46 0.00 46.39 4.42
65 66 3.039202 CTTGTTGCGTCGGGGATGC 62.039 63.158 2.94 2.94 44.02 3.91
66 67 0.390603 TACTTGTTGCGTCGGGGATG 60.391 55.000 0.00 0.00 0.00 3.51
67 68 0.108329 CTACTTGTTGCGTCGGGGAT 60.108 55.000 0.00 0.00 0.00 3.85
68 69 1.290955 CTACTTGTTGCGTCGGGGA 59.709 57.895 0.00 0.00 0.00 4.81
69 70 2.388232 GCTACTTGTTGCGTCGGGG 61.388 63.158 0.00 0.00 0.00 5.73
70 71 2.726691 CGCTACTTGTTGCGTCGGG 61.727 63.158 18.19 0.00 46.09 5.14
71 72 2.769617 CGCTACTTGTTGCGTCGG 59.230 61.111 18.19 0.00 46.09 4.79
76 77 3.872560 AAACACTACGCTACTTGTTGC 57.127 42.857 0.00 0.00 32.54 4.17
77 78 5.652744 AGAAAACACTACGCTACTTGTTG 57.347 39.130 0.00 0.00 32.54 3.33
78 79 6.483687 CAAAGAAAACACTACGCTACTTGTT 58.516 36.000 0.00 0.00 33.59 2.83
80 81 4.904154 GCAAAGAAAACACTACGCTACTTG 59.096 41.667 0.00 0.00 0.00 3.16
82 83 4.124238 TGCAAAGAAAACACTACGCTACT 58.876 39.130 0.00 0.00 0.00 2.57
83 84 4.461992 TGCAAAGAAAACACTACGCTAC 57.538 40.909 0.00 0.00 0.00 3.58
85 86 3.304659 CCATGCAAAGAAAACACTACGCT 60.305 43.478 0.00 0.00 0.00 5.07
87 88 4.223320 ACCATGCAAAGAAAACACTACG 57.777 40.909 0.00 0.00 0.00 3.51
105 106 7.930325 TGTGAAATCTTAAAATCATGCAAACCA 59.070 29.630 0.00 0.00 0.00 3.67
106 107 8.309163 TGTGAAATCTTAAAATCATGCAAACC 57.691 30.769 0.00 0.00 0.00 3.27
118 119 8.739039 CCAACACCTCATATGTGAAATCTTAAA 58.261 33.333 6.35 0.00 37.18 1.52
119 120 7.339212 CCCAACACCTCATATGTGAAATCTTAA 59.661 37.037 6.35 0.00 37.18 1.85
120 121 6.828273 CCCAACACCTCATATGTGAAATCTTA 59.172 38.462 6.35 0.00 37.18 2.10
123 124 5.192927 TCCCAACACCTCATATGTGAAATC 58.807 41.667 6.35 0.00 37.18 2.17
124 125 5.191727 TCCCAACACCTCATATGTGAAAT 57.808 39.130 6.35 0.00 37.18 2.17
125 126 4.649267 TCCCAACACCTCATATGTGAAA 57.351 40.909 6.35 0.00 37.18 2.69
126 127 4.860802 ATCCCAACACCTCATATGTGAA 57.139 40.909 6.35 0.00 37.18 3.18
127 128 4.227073 TGAATCCCAACACCTCATATGTGA 59.773 41.667 6.35 0.00 37.18 3.58
128 129 4.525996 TGAATCCCAACACCTCATATGTG 58.474 43.478 1.90 0.00 39.63 3.21
129 130 4.474651 TCTGAATCCCAACACCTCATATGT 59.525 41.667 1.90 0.00 0.00 2.29
130 131 5.039920 TCTGAATCCCAACACCTCATATG 57.960 43.478 0.00 0.00 0.00 1.78
131 132 4.971282 TCTCTGAATCCCAACACCTCATAT 59.029 41.667 0.00 0.00 0.00 1.78
132 133 4.361783 TCTCTGAATCCCAACACCTCATA 58.638 43.478 0.00 0.00 0.00 2.15
134 135 2.619931 TCTCTGAATCCCAACACCTCA 58.380 47.619 0.00 0.00 0.00 3.86
135 136 3.703001 TTCTCTGAATCCCAACACCTC 57.297 47.619 0.00 0.00 0.00 3.85
136 137 3.395941 ACTTTCTCTGAATCCCAACACCT 59.604 43.478 0.00 0.00 0.00 4.00
138 139 5.998363 ACTAACTTTCTCTGAATCCCAACAC 59.002 40.000 0.00 0.00 0.00 3.32
139 140 5.997746 CACTAACTTTCTCTGAATCCCAACA 59.002 40.000 0.00 0.00 0.00 3.33
140 141 5.106515 GCACTAACTTTCTCTGAATCCCAAC 60.107 44.000 0.00 0.00 0.00 3.77
141 142 5.003804 GCACTAACTTTCTCTGAATCCCAA 58.996 41.667 0.00 0.00 0.00 4.12
142 143 4.287067 AGCACTAACTTTCTCTGAATCCCA 59.713 41.667 0.00 0.00 0.00 4.37
143 144 4.837972 AGCACTAACTTTCTCTGAATCCC 58.162 43.478 0.00 0.00 0.00 3.85
144 145 5.482908 TGAGCACTAACTTTCTCTGAATCC 58.517 41.667 0.00 0.00 0.00 3.01
145 146 5.580297 CCTGAGCACTAACTTTCTCTGAATC 59.420 44.000 0.00 0.00 0.00 2.52
146 147 5.247110 TCCTGAGCACTAACTTTCTCTGAAT 59.753 40.000 0.00 0.00 0.00 2.57
149 150 4.527509 TCCTGAGCACTAACTTTCTCTG 57.472 45.455 0.00 0.00 0.00 3.35
150 151 4.559704 CGTTCCTGAGCACTAACTTTCTCT 60.560 45.833 0.00 0.00 0.00 3.10
151 152 3.675698 CGTTCCTGAGCACTAACTTTCTC 59.324 47.826 0.00 0.00 0.00 2.87
153 154 2.157863 GCGTTCCTGAGCACTAACTTTC 59.842 50.000 0.00 0.00 0.00 2.62
154 155 2.143925 GCGTTCCTGAGCACTAACTTT 58.856 47.619 0.00 0.00 0.00 2.66
155 156 1.797025 GCGTTCCTGAGCACTAACTT 58.203 50.000 0.00 0.00 0.00 2.66
157 158 0.666577 ACGCGTTCCTGAGCACTAAC 60.667 55.000 5.58 0.00 0.00 2.34
158 159 0.388134 GACGCGTTCCTGAGCACTAA 60.388 55.000 15.53 0.00 0.00 2.24
159 160 1.211969 GACGCGTTCCTGAGCACTA 59.788 57.895 15.53 0.00 0.00 2.74
160 161 2.049063 GACGCGTTCCTGAGCACT 60.049 61.111 15.53 0.00 0.00 4.40
163 164 3.470567 CGTGACGCGTTCCTGAGC 61.471 66.667 15.53 0.00 35.54 4.26
164 165 3.470567 GCGTGACGCGTTCCTGAG 61.471 66.667 16.19 3.39 44.55 3.35
180 181 2.043248 TCTCTAGTGGGTCCCCGC 60.043 66.667 5.13 7.89 46.30 6.13
182 183 1.321074 CGTGTCTCTAGTGGGTCCCC 61.321 65.000 5.13 0.00 0.00 4.81
183 184 0.611340 ACGTGTCTCTAGTGGGTCCC 60.611 60.000 0.00 0.00 0.00 4.46
185 186 1.199558 GACACGTGTCTCTAGTGGGTC 59.800 57.143 35.51 10.35 41.65 4.46
196 197 1.337823 ACCCATTGCTAGACACGTGTC 60.338 52.381 35.83 35.83 45.08 3.67
197 198 0.685097 ACCCATTGCTAGACACGTGT 59.315 50.000 23.64 23.64 0.00 4.49
200 201 0.036388 ACCACCCATTGCTAGACACG 60.036 55.000 0.00 0.00 0.00 4.49
201 202 2.200373 AACCACCCATTGCTAGACAC 57.800 50.000 0.00 0.00 0.00 3.67
202 203 2.513753 CAAACCACCCATTGCTAGACA 58.486 47.619 0.00 0.00 0.00 3.41
208 209 1.664333 CACGCAAACCACCCATTGC 60.664 57.895 0.58 0.58 46.45 3.56
209 210 1.006337 CCACGCAAACCACCCATTG 60.006 57.895 0.00 0.00 0.00 2.82
210 211 2.866726 GCCACGCAAACCACCCATT 61.867 57.895 0.00 0.00 0.00 3.16
211 212 3.302344 GCCACGCAAACCACCCAT 61.302 61.111 0.00 0.00 0.00 4.00
224 225 3.414700 CTTGTCTCACGCGGCCAC 61.415 66.667 12.47 1.52 0.00 5.01
230 231 4.077188 GCCACGCTTGTCTCACGC 62.077 66.667 0.00 0.00 0.00 5.34
231 232 3.767230 CGCCACGCTTGTCTCACG 61.767 66.667 0.00 0.00 0.00 4.35
251 252 3.969250 GATCAACTTCCGCCGGCCA 62.969 63.158 23.46 4.32 0.00 5.36
253 254 3.202706 GGATCAACTTCCGCCGGC 61.203 66.667 19.07 19.07 0.00 6.13
259 260 1.278127 TGGGTCTTCGGATCAACTTCC 59.722 52.381 0.00 0.00 0.00 3.46
260 261 2.289444 TGTGGGTCTTCGGATCAACTTC 60.289 50.000 0.00 0.00 30.50 3.01
261 262 1.697432 TGTGGGTCTTCGGATCAACTT 59.303 47.619 0.00 0.00 30.50 2.66
262 263 1.276421 CTGTGGGTCTTCGGATCAACT 59.724 52.381 0.00 0.00 30.50 3.16
263 264 1.676014 CCTGTGGGTCTTCGGATCAAC 60.676 57.143 0.00 0.00 29.82 3.18
264 265 0.613260 CCTGTGGGTCTTCGGATCAA 59.387 55.000 0.00 0.00 0.00 2.57
265 266 1.899437 GCCTGTGGGTCTTCGGATCA 61.899 60.000 0.00 0.00 34.45 2.92
266 267 1.153349 GCCTGTGGGTCTTCGGATC 60.153 63.158 0.00 0.00 34.45 3.36
268 269 1.841556 AAGCCTGTGGGTCTTCGGA 60.842 57.895 0.00 0.00 30.76 4.55
269 270 1.672356 CAAGCCTGTGGGTCTTCGG 60.672 63.158 0.00 0.00 30.76 4.30
270 271 1.672356 CCAAGCCTGTGGGTCTTCG 60.672 63.158 0.00 0.00 34.77 3.79
271 272 0.606673 GACCAAGCCTGTGGGTCTTC 60.607 60.000 0.00 0.00 45.99 2.87
272 273 1.456287 GACCAAGCCTGTGGGTCTT 59.544 57.895 0.00 0.00 45.99 3.01
273 274 3.161557 GACCAAGCCTGTGGGTCT 58.838 61.111 0.00 0.00 45.99 3.85
277 278 0.466189 AACAGTGACCAAGCCTGTGG 60.466 55.000 0.00 0.00 44.92 4.17
278 279 0.664761 CAACAGTGACCAAGCCTGTG 59.335 55.000 0.00 0.00 39.29 3.66
279 280 0.466189 CCAACAGTGACCAAGCCTGT 60.466 55.000 0.00 0.00 41.01 4.00
280 281 0.466189 ACCAACAGTGACCAAGCCTG 60.466 55.000 0.00 0.00 0.00 4.85
281 282 1.922821 ACCAACAGTGACCAAGCCT 59.077 52.632 0.00 0.00 0.00 4.58
282 283 4.579127 ACCAACAGTGACCAAGCC 57.421 55.556 0.00 0.00 0.00 4.35
291 292 5.975693 TTTGTTTTCTCTTCACCAACAGT 57.024 34.783 0.00 0.00 0.00 3.55
292 293 7.674705 GCATTTTTGTTTTCTCTTCACCAACAG 60.675 37.037 0.00 0.00 0.00 3.16
295 296 6.405538 AGCATTTTTGTTTTCTCTTCACCAA 58.594 32.000 0.00 0.00 0.00 3.67
297 298 7.379797 GTCTAGCATTTTTGTTTTCTCTTCACC 59.620 37.037 0.00 0.00 0.00 4.02
298 299 7.915397 TGTCTAGCATTTTTGTTTTCTCTTCAC 59.085 33.333 0.00 0.00 0.00 3.18
301 302 9.899226 GTATGTCTAGCATTTTTGTTTTCTCTT 57.101 29.630 5.22 0.00 38.94 2.85
332 333 9.923143 GGAAACAGTTTACAGGCTTTTATAAAT 57.077 29.630 3.06 0.00 0.00 1.40
334 335 8.466617 TGGAAACAGTTTACAGGCTTTTATAA 57.533 30.769 6.87 0.00 35.01 0.98
353 354 6.325919 TGTCATTGGTTGTTAGATGGAAAC 57.674 37.500 0.00 0.00 0.00 2.78
354 355 6.968263 TTGTCATTGGTTGTTAGATGGAAA 57.032 33.333 0.00 0.00 0.00 3.13
355 356 6.239176 GGTTTGTCATTGGTTGTTAGATGGAA 60.239 38.462 0.00 0.00 0.00 3.53
357 358 5.243730 AGGTTTGTCATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
358 359 6.207417 AGAGGTTTGTCATTGGTTGTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
359 360 6.306987 AGAGGTTTGTCATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
360 361 5.690865 AGAGGTTTGTCATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
361 362 6.263168 AGAAGAGGTTTGTCATTGGTTGTTAG 59.737 38.462 0.00 0.00 0.00 2.34
362 363 6.126409 AGAAGAGGTTTGTCATTGGTTGTTA 58.874 36.000 0.00 0.00 0.00 2.41
363 364 4.956075 AGAAGAGGTTTGTCATTGGTTGTT 59.044 37.500 0.00 0.00 0.00 2.83
365 366 4.022849 GGAGAAGAGGTTTGTCATTGGTTG 60.023 45.833 0.00 0.00 0.00 3.77
367 368 3.498661 GGGAGAAGAGGTTTGTCATTGGT 60.499 47.826 0.00 0.00 0.00 3.67
368 369 3.084786 GGGAGAAGAGGTTTGTCATTGG 58.915 50.000 0.00 0.00 0.00 3.16
369 370 3.084786 GGGGAGAAGAGGTTTGTCATTG 58.915 50.000 0.00 0.00 0.00 2.82
370 371 2.989571 AGGGGAGAAGAGGTTTGTCATT 59.010 45.455 0.00 0.00 0.00 2.57
371 372 2.307098 CAGGGGAGAAGAGGTTTGTCAT 59.693 50.000 0.00 0.00 0.00 3.06
372 373 1.699634 CAGGGGAGAAGAGGTTTGTCA 59.300 52.381 0.00 0.00 0.00 3.58
373 374 1.978580 TCAGGGGAGAAGAGGTTTGTC 59.021 52.381 0.00 0.00 0.00 3.18
375 376 3.728385 AATCAGGGGAGAAGAGGTTTG 57.272 47.619 0.00 0.00 0.00 2.93
378 379 3.260205 TGAAAATCAGGGGAGAAGAGGT 58.740 45.455 0.00 0.00 0.00 3.85
379 380 3.883669 CTGAAAATCAGGGGAGAAGAGG 58.116 50.000 0.00 0.00 40.71 3.69
390 391 0.972471 GCCCACCCCCTGAAAATCAG 60.972 60.000 0.32 0.32 43.91 2.90
392 393 1.685765 GGCCCACCCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
393 394 2.449777 GGCCCACCCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
394 395 4.293671 CGGCCCACCCCCTGAAAA 62.294 66.667 0.00 0.00 0.00 2.29
412 413 1.053835 TGGCCAATAGATGAGCGGGA 61.054 55.000 0.61 0.00 0.00 5.14
413 414 0.179020 TTGGCCAATAGATGAGCGGG 60.179 55.000 16.05 0.00 0.00 6.13
415 416 2.497138 TCATTGGCCAATAGATGAGCG 58.503 47.619 30.19 15.39 0.00 5.03
416 417 4.924305 TTTCATTGGCCAATAGATGAGC 57.076 40.909 30.19 0.00 30.92 4.26
418 419 7.147915 GGTTAGTTTTCATTGGCCAATAGATGA 60.148 37.037 30.19 21.68 0.00 2.92
419 420 6.980397 GGTTAGTTTTCATTGGCCAATAGATG 59.020 38.462 30.19 19.67 0.00 2.90
421 422 5.420739 GGGTTAGTTTTCATTGGCCAATAGA 59.579 40.000 30.19 24.26 0.00 1.98
422 423 5.186797 TGGGTTAGTTTTCATTGGCCAATAG 59.813 40.000 30.19 22.55 0.00 1.73
423 424 5.046950 GTGGGTTAGTTTTCATTGGCCAATA 60.047 40.000 30.19 13.90 0.00 1.90
424 425 3.906846 TGGGTTAGTTTTCATTGGCCAAT 59.093 39.130 25.73 25.73 0.00 3.16
425 426 3.070302 GTGGGTTAGTTTTCATTGGCCAA 59.930 43.478 23.00 23.00 0.00 4.52
426 427 2.630580 GTGGGTTAGTTTTCATTGGCCA 59.369 45.455 0.00 0.00 0.00 5.36
428 429 2.028476 GGGTGGGTTAGTTTTCATTGGC 60.028 50.000 0.00 0.00 0.00 4.52
429 430 3.258123 CAGGGTGGGTTAGTTTTCATTGG 59.742 47.826 0.00 0.00 0.00 3.16
430 431 3.895041 ACAGGGTGGGTTAGTTTTCATTG 59.105 43.478 0.00 0.00 0.00 2.82
431 432 4.193240 ACAGGGTGGGTTAGTTTTCATT 57.807 40.909 0.00 0.00 0.00 2.57
433 434 4.792513 TTACAGGGTGGGTTAGTTTTCA 57.207 40.909 0.00 0.00 0.00 2.69
434 435 5.508489 GCTTTTACAGGGTGGGTTAGTTTTC 60.508 44.000 0.00 0.00 0.00 2.29
435 436 4.342951 GCTTTTACAGGGTGGGTTAGTTTT 59.657 41.667 0.00 0.00 0.00 2.43
438 439 2.224942 GGCTTTTACAGGGTGGGTTAGT 60.225 50.000 0.00 0.00 0.00 2.24
440 441 2.067386 AGGCTTTTACAGGGTGGGTTA 58.933 47.619 0.00 0.00 0.00 2.85
441 442 0.857675 AGGCTTTTACAGGGTGGGTT 59.142 50.000 0.00 0.00 0.00 4.11
442 443 0.112412 CAGGCTTTTACAGGGTGGGT 59.888 55.000 0.00 0.00 0.00 4.51
443 444 1.250840 GCAGGCTTTTACAGGGTGGG 61.251 60.000 0.00 0.00 0.00 4.61
444 445 0.539438 TGCAGGCTTTTACAGGGTGG 60.539 55.000 0.00 0.00 0.00 4.61
445 446 1.327303 TTGCAGGCTTTTACAGGGTG 58.673 50.000 0.00 0.00 0.00 4.61
446 447 1.686587 GTTTGCAGGCTTTTACAGGGT 59.313 47.619 0.00 0.00 0.00 4.34
447 448 1.963515 AGTTTGCAGGCTTTTACAGGG 59.036 47.619 0.00 0.00 0.00 4.45
448 449 2.362077 ACAGTTTGCAGGCTTTTACAGG 59.638 45.455 0.00 0.00 0.00 4.00
450 451 4.180057 CAAACAGTTTGCAGGCTTTTACA 58.820 39.130 13.11 0.00 33.36 2.41
451 452 4.180817 ACAAACAGTTTGCAGGCTTTTAC 58.819 39.130 23.53 0.00 44.39 2.01
452 453 4.464069 ACAAACAGTTTGCAGGCTTTTA 57.536 36.364 23.53 0.00 44.39 1.52
453 454 3.333029 ACAAACAGTTTGCAGGCTTTT 57.667 38.095 23.53 1.18 44.39 2.27
456 457 1.333619 CGTACAAACAGTTTGCAGGCT 59.666 47.619 23.53 8.37 44.39 4.58
457 458 1.064952 ACGTACAAACAGTTTGCAGGC 59.935 47.619 23.53 11.41 44.39 4.85
458 459 2.096819 ACACGTACAAACAGTTTGCAGG 59.903 45.455 23.53 18.80 44.39 4.85
461 462 3.242478 TGCTACACGTACAAACAGTTTGC 60.242 43.478 23.53 9.32 44.39 3.68
462 463 4.523853 TGCTACACGTACAAACAGTTTG 57.476 40.909 22.26 22.26 45.95 2.93
463 464 5.507077 CAATGCTACACGTACAAACAGTTT 58.493 37.500 0.00 0.00 0.00 2.66
464 465 4.553938 GCAATGCTACACGTACAAACAGTT 60.554 41.667 0.00 0.00 0.00 3.16
465 466 3.059188 GCAATGCTACACGTACAAACAGT 60.059 43.478 0.00 0.00 0.00 3.55
466 467 3.479006 GCAATGCTACACGTACAAACAG 58.521 45.455 0.00 0.00 0.00 3.16
468 469 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
469 470 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
470 471 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
471 472 0.738063 CCGGCAATGCTACACGTACA 60.738 55.000 4.82 0.00 0.00 2.90
472 473 0.458889 TCCGGCAATGCTACACGTAC 60.459 55.000 4.82 0.00 0.00 3.67
475 476 0.739462 TCTTCCGGCAATGCTACACG 60.739 55.000 4.82 0.00 0.00 4.49
476 477 1.009829 CTCTTCCGGCAATGCTACAC 58.990 55.000 4.82 0.00 0.00 2.90
478 479 2.024176 TTCTCTTCCGGCAATGCTAC 57.976 50.000 4.82 0.00 0.00 3.58
480 481 1.909700 TTTTCTCTTCCGGCAATGCT 58.090 45.000 4.82 0.00 0.00 3.79
482 483 4.354587 GCTATTTTTCTCTTCCGGCAATG 58.645 43.478 0.00 0.00 0.00 2.82
484 485 2.418628 CGCTATTTTTCTCTTCCGGCAA 59.581 45.455 0.00 0.00 0.00 4.52
486 487 2.277084 TCGCTATTTTTCTCTTCCGGC 58.723 47.619 0.00 0.00 0.00 6.13
487 488 2.285488 GCTCGCTATTTTTCTCTTCCGG 59.715 50.000 0.00 0.00 0.00 5.14
489 490 4.184629 TCTGCTCGCTATTTTTCTCTTCC 58.815 43.478 0.00 0.00 0.00 3.46
490 491 4.269844 CCTCTGCTCGCTATTTTTCTCTTC 59.730 45.833 0.00 0.00 0.00 2.87
491 492 4.187694 CCTCTGCTCGCTATTTTTCTCTT 58.812 43.478 0.00 0.00 0.00 2.85
492 493 3.196685 ACCTCTGCTCGCTATTTTTCTCT 59.803 43.478 0.00 0.00 0.00 3.10
493 494 3.308323 CACCTCTGCTCGCTATTTTTCTC 59.692 47.826 0.00 0.00 0.00 2.87
494 495 3.265791 CACCTCTGCTCGCTATTTTTCT 58.734 45.455 0.00 0.00 0.00 2.52
505 506 1.001860 AGAAGTTCTGCACCTCTGCTC 59.998 52.381 4.10 0.00 44.57 4.26
559 560 4.444024 CATGTCCGGTGCGCAACG 62.444 66.667 39.33 39.33 42.03 4.10
806 2210 3.012518 CTGATTAGAACCCACAGCCTTG 58.987 50.000 0.00 0.00 0.00 3.61
807 2211 2.644798 ACTGATTAGAACCCACAGCCTT 59.355 45.455 0.00 0.00 32.67 4.35
809 2213 2.027192 TGACTGATTAGAACCCACAGCC 60.027 50.000 0.00 0.00 32.67 4.85
810 2214 3.265791 CTGACTGATTAGAACCCACAGC 58.734 50.000 0.00 0.00 32.67 4.40
811 2215 3.265791 GCTGACTGATTAGAACCCACAG 58.734 50.000 0.00 0.00 35.14 3.66
920 2572 9.032624 GCCCTCATGACCTTTTATACTACTATA 57.967 37.037 0.00 0.00 0.00 1.31
962 2614 1.035385 GTAATTTGGGGTCCCGGCAG 61.035 60.000 0.48 0.00 39.42 4.85
967 2619 1.567175 TGGCTAGTAATTTGGGGTCCC 59.433 52.381 0.00 0.00 0.00 4.46
981 2633 4.883083 TCATCGCTACCTAATTTGGCTAG 58.117 43.478 5.79 8.12 0.00 3.42
982 2634 4.948341 TCATCGCTACCTAATTTGGCTA 57.052 40.909 5.79 0.00 0.00 3.93
983 2635 3.838244 TCATCGCTACCTAATTTGGCT 57.162 42.857 5.79 0.00 0.00 4.75
1796 5437 0.392998 AGCGGCATCCTGAATTTCGT 60.393 50.000 1.45 0.00 0.00 3.85
2016 5682 6.717997 TGTCATCTACTAGTAGTTGGTTGTCA 59.282 38.462 28.56 19.92 34.97 3.58
2017 5683 7.154435 TGTCATCTACTAGTAGTTGGTTGTC 57.846 40.000 28.56 18.45 34.97 3.18
2018 5684 7.014905 TGTTGTCATCTACTAGTAGTTGGTTGT 59.985 37.037 28.56 9.62 34.97 3.32
2019 5685 7.328737 GTGTTGTCATCTACTAGTAGTTGGTTG 59.671 40.741 28.56 19.17 34.97 3.77
2020 5686 7.232941 AGTGTTGTCATCTACTAGTAGTTGGTT 59.767 37.037 28.56 11.45 34.97 3.67
2021 5687 6.720288 AGTGTTGTCATCTACTAGTAGTTGGT 59.280 38.462 28.56 14.10 34.97 3.67
2022 5688 7.159322 AGTGTTGTCATCTACTAGTAGTTGG 57.841 40.000 28.56 19.58 34.97 3.77
2023 5689 8.948145 AGTAGTGTTGTCATCTACTAGTAGTTG 58.052 37.037 25.58 25.58 41.36 3.16
2024 5690 9.165035 GAGTAGTGTTGTCATCTACTAGTAGTT 57.835 37.037 25.58 16.92 42.61 2.24
2025 5691 7.769970 GGAGTAGTGTTGTCATCTACTAGTAGT 59.230 40.741 25.58 8.14 42.61 2.73
2026 5692 7.227116 GGGAGTAGTGTTGTCATCTACTAGTAG 59.773 44.444 21.87 21.87 42.61 2.57
2027 5693 7.052873 GGGAGTAGTGTTGTCATCTACTAGTA 58.947 42.308 1.89 1.89 42.61 1.82
2028 5694 5.887035 GGGAGTAGTGTTGTCATCTACTAGT 59.113 44.000 0.00 0.00 42.61 2.57
2029 5695 5.886474 TGGGAGTAGTGTTGTCATCTACTAG 59.114 44.000 10.68 0.00 42.61 2.57
2030 5696 5.823312 TGGGAGTAGTGTTGTCATCTACTA 58.177 41.667 10.68 0.00 42.61 1.82
2031 5697 4.673968 TGGGAGTAGTGTTGTCATCTACT 58.326 43.478 10.57 10.57 44.39 2.57
2032 5698 5.401531 TTGGGAGTAGTGTTGTCATCTAC 57.598 43.478 0.00 0.00 35.63 2.59
2033 5699 6.183360 GCTATTGGGAGTAGTGTTGTCATCTA 60.183 42.308 0.00 0.00 0.00 1.98
2034 5700 5.395768 GCTATTGGGAGTAGTGTTGTCATCT 60.396 44.000 0.00 0.00 0.00 2.90
2035 5701 4.811557 GCTATTGGGAGTAGTGTTGTCATC 59.188 45.833 0.00 0.00 0.00 2.92
2036 5702 4.471386 AGCTATTGGGAGTAGTGTTGTCAT 59.529 41.667 0.00 0.00 0.00 3.06
2054 5741 9.301153 CCTTTTTATTTGCATCGTTTAAGCTAT 57.699 29.630 0.00 0.00 0.00 2.97
2257 5964 9.360093 CCGCAATAAAAATCATTTTACCAAGTA 57.640 29.630 0.00 0.00 42.22 2.24
2258 5965 7.333174 CCCGCAATAAAAATCATTTTACCAAGT 59.667 33.333 0.00 0.00 42.22 3.16
2259 5966 7.201600 CCCCGCAATAAAAATCATTTTACCAAG 60.202 37.037 0.00 0.00 42.22 3.61
2262 5969 6.036626 CACCCCGCAATAAAAATCATTTTACC 59.963 38.462 0.00 0.00 42.22 2.85
2268 5975 4.405358 ACATCACCCCGCAATAAAAATCAT 59.595 37.500 0.00 0.00 0.00 2.45
2280 5987 0.392998 AGACAATCACATCACCCCGC 60.393 55.000 0.00 0.00 0.00 6.13
2281 5988 1.739466 CAAGACAATCACATCACCCCG 59.261 52.381 0.00 0.00 0.00 5.73
2283 5990 2.161855 TGCAAGACAATCACATCACCC 58.838 47.619 0.00 0.00 0.00 4.61
2285 5992 3.176708 GCATGCAAGACAATCACATCAC 58.823 45.455 14.21 0.00 0.00 3.06
2288 5995 2.414957 CGTGCATGCAAGACAATCACAT 60.415 45.455 26.87 0.00 35.51 3.21
2289 5996 1.069091 CGTGCATGCAAGACAATCACA 60.069 47.619 26.87 0.00 35.51 3.58
2290 5997 1.069022 ACGTGCATGCAAGACAATCAC 60.069 47.619 35.20 14.02 33.64 3.06
2291 5998 1.237533 ACGTGCATGCAAGACAATCA 58.762 45.000 35.20 2.26 0.00 2.57
2292 5999 2.245096 GAACGTGCATGCAAGACAATC 58.755 47.619 35.20 22.77 0.00 2.67
2293 6000 1.068333 GGAACGTGCATGCAAGACAAT 60.068 47.619 35.20 19.57 0.00 2.71
2299 6006 0.457443 TTGTTGGAACGTGCATGCAA 59.543 45.000 24.58 1.86 0.00 4.08
2323 6030 4.695455 CCATCGACTCACAACCTACAAATT 59.305 41.667 0.00 0.00 0.00 1.82
2466 6173 1.895238 GGCCCTAGAGCGTAACACA 59.105 57.895 0.00 0.00 0.00 3.72
3356 7090 4.663636 TGCGTAAAGAAAAGAAGCTAGC 57.336 40.909 6.62 6.62 0.00 3.42
3492 7233 1.479389 CCTTCACCAGCCTCACCTTTT 60.479 52.381 0.00 0.00 0.00 2.27
3599 7340 1.103803 GATCTGCCTACGGTCTCACA 58.896 55.000 0.00 0.00 0.00 3.58
3791 7533 6.798476 ACACGTTATACATCATTCGTATACGG 59.202 38.462 24.18 9.36 40.29 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.