Multiple sequence alignment - TraesCS2B01G157900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G157900 chr2B 100.000 4759 0 0 1 4759 131598330 131593572 0.000000e+00 8789.0
1 TraesCS2B01G157900 chr2A 87.995 4573 268 126 1 4437 80842470 80846897 0.000000e+00 5144.0
2 TraesCS2B01G157900 chr2A 91.803 61 1 3 4582 4641 627938347 627938404 1.100000e-11 82.4
3 TraesCS2B01G157900 chr2D 90.323 2728 146 48 1799 4453 80104188 80106870 0.000000e+00 3467.0
4 TraesCS2B01G157900 chr2D 90.028 1815 120 40 1 1796 80102383 80104155 0.000000e+00 2292.0
5 TraesCS2B01G157900 chr6A 98.246 57 1 0 4585 4641 603408568 603408512 3.030000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G157900 chr2B 131593572 131598330 4758 True 8789.0 8789 100.0000 1 4759 1 chr2B.!!$R1 4758
1 TraesCS2B01G157900 chr2A 80842470 80846897 4427 False 5144.0 5144 87.9950 1 4437 1 chr2A.!!$F1 4436
2 TraesCS2B01G157900 chr2D 80102383 80106870 4487 False 2879.5 3467 90.1755 1 4453 2 chr2D.!!$F1 4452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 642 0.176910 AAAACGCCCACCAACCAAAG 59.823 50.0 0.00 0.0 0.0 2.77 F
1142 1180 0.315869 GTGTTGTTTCTCGTGGCGTG 60.316 55.0 0.00 0.0 0.0 5.34 F
1461 1507 0.596082 CCCAATTGACCGCTCGTTTT 59.404 50.0 7.12 0.0 0.0 2.43 F
2252 2370 0.042281 AACCTCCTACCCGTTAGCCT 59.958 55.0 0.00 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1640 0.035317 TACCAACCAGACTGCTGCTG 59.965 55.000 4.89 4.89 40.91 4.41 R
2028 2131 1.422402 TCAAACACTACAACCCCCTCC 59.578 52.381 0.00 0.00 0.00 4.30 R
3313 3431 1.086067 CGCGATCTGCACCATCAGTT 61.086 55.000 0.00 0.00 46.97 3.16 R
4220 4415 0.251341 ACAAGGATCAGCCAACACCC 60.251 55.000 0.00 0.00 40.02 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 5.721000 TCTTGCAATATCCATTTTGTCCCTT 59.279 36.000 0.00 0.00 0.00 3.95
110 114 6.667981 GCAAAACAATGCGCGATAAATATA 57.332 33.333 12.10 0.00 36.45 0.86
114 118 9.117145 CAAAACAATGCGCGATAAATATATTCT 57.883 29.630 12.10 0.00 0.00 2.40
178 182 7.284489 CCTTCATAAATACCTCGGGAAATTCAA 59.716 37.037 0.00 0.00 0.00 2.69
190 194 4.381566 CGGGAAATTCAACGTCATTTTGAC 59.618 41.667 0.00 0.00 43.65 3.18
209 213 8.755696 TTTTGACATGCAACATAAGTATTTCC 57.244 30.769 0.00 0.00 35.91 3.13
213 217 7.176515 TGACATGCAACATAAGTATTTCCTTGT 59.823 33.333 0.00 0.00 0.00 3.16
332 336 3.918258 TGTCGAGTTTCAACAACTTCG 57.082 42.857 0.00 0.00 0.00 3.79
335 339 2.933906 TCGAGTTTCAACAACTTCGCTT 59.066 40.909 0.00 0.00 0.00 4.68
336 340 3.000925 TCGAGTTTCAACAACTTCGCTTC 59.999 43.478 0.00 0.00 0.00 3.86
338 342 3.279434 AGTTTCAACAACTTCGCTTCCT 58.721 40.909 0.00 0.00 0.00 3.36
345 349 2.554032 ACAACTTCGCTTCCTTTCATGG 59.446 45.455 0.00 0.00 0.00 3.66
348 352 3.012518 ACTTCGCTTCCTTTCATGGATG 58.987 45.455 0.00 0.00 35.83 3.51
360 364 4.771590 TTCATGGATGCTCAGACAAAAC 57.228 40.909 0.00 0.00 0.00 2.43
361 365 2.743664 TCATGGATGCTCAGACAAAACG 59.256 45.455 0.00 0.00 0.00 3.60
377 381 7.274904 CAGACAAAACGGTCTCTCGATAATTTA 59.725 37.037 0.00 0.00 46.05 1.40
382 386 5.462405 ACGGTCTCTCGATAATTTATCAGC 58.538 41.667 15.00 5.41 34.87 4.26
384 388 4.324936 GGTCTCTCGATAATTTATCAGCGC 59.675 45.833 15.00 0.00 34.87 5.92
425 431 4.872664 ACTCGACTAGAAAACAAGAGTGG 58.127 43.478 0.00 0.00 36.31 4.00
436 442 1.311859 CAAGAGTGGCTTTGCAGTCA 58.688 50.000 0.00 0.00 33.60 3.41
445 451 2.616510 GGCTTTGCAGTCACATAGTCCT 60.617 50.000 0.00 0.00 0.00 3.85
480 486 3.501828 CAGAATGTCGATGGTTGGTTCAA 59.498 43.478 0.00 0.00 0.00 2.69
497 503 5.538053 TGGTTCAAAGATGCACTAAATTCCA 59.462 36.000 0.00 0.00 0.00 3.53
503 509 9.241919 TCAAAGATGCACTAAATTCCATTTCTA 57.758 29.630 0.00 0.00 33.82 2.10
567 574 4.955925 TGCACTAAAATCCATTGGTACG 57.044 40.909 1.86 0.00 0.00 3.67
635 642 0.176910 AAAACGCCCACCAACCAAAG 59.823 50.000 0.00 0.00 0.00 2.77
636 643 1.681486 AAACGCCCACCAACCAAAGG 61.681 55.000 0.00 0.00 0.00 3.11
637 644 2.203422 CGCCCACCAACCAAAGGA 60.203 61.111 0.00 0.00 0.00 3.36
668 675 1.623081 AATACAACAGTGACGCGCCG 61.623 55.000 5.73 0.00 0.00 6.46
848 868 1.157870 GGCTCCGTCTCTCTCTCTCG 61.158 65.000 0.00 0.00 0.00 4.04
849 869 1.772063 GCTCCGTCTCTCTCTCTCGC 61.772 65.000 0.00 0.00 0.00 5.03
850 870 1.153329 TCCGTCTCTCTCTCTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
851 871 1.450491 CCGTCTCTCTCTCTCGCCA 60.450 63.158 0.00 0.00 0.00 5.69
852 872 0.817634 CCGTCTCTCTCTCTCGCCAT 60.818 60.000 0.00 0.00 0.00 4.40
853 873 0.586319 CGTCTCTCTCTCTCGCCATC 59.414 60.000 0.00 0.00 0.00 3.51
854 874 1.810031 CGTCTCTCTCTCTCGCCATCT 60.810 57.143 0.00 0.00 0.00 2.90
855 875 1.873591 GTCTCTCTCTCTCGCCATCTC 59.126 57.143 0.00 0.00 0.00 2.75
856 876 1.768275 TCTCTCTCTCTCGCCATCTCT 59.232 52.381 0.00 0.00 0.00 3.10
857 877 2.146342 CTCTCTCTCTCGCCATCTCTC 58.854 57.143 0.00 0.00 0.00 3.20
858 878 1.768275 TCTCTCTCTCGCCATCTCTCT 59.232 52.381 0.00 0.00 0.00 3.10
859 879 2.146342 CTCTCTCTCGCCATCTCTCTC 58.854 57.143 0.00 0.00 0.00 3.20
860 880 1.488393 TCTCTCTCGCCATCTCTCTCA 59.512 52.381 0.00 0.00 0.00 3.27
861 881 1.603802 CTCTCTCGCCATCTCTCTCAC 59.396 57.143 0.00 0.00 0.00 3.51
862 882 1.211703 TCTCTCGCCATCTCTCTCACT 59.788 52.381 0.00 0.00 0.00 3.41
863 883 1.334556 CTCTCGCCATCTCTCTCACTG 59.665 57.143 0.00 0.00 0.00 3.66
947 971 3.680620 CTCCCCGCTTCGCCATCAA 62.681 63.158 0.00 0.00 0.00 2.57
1039 1075 0.712222 CGCCGTACGTTTCTTCCTTC 59.288 55.000 15.21 0.00 36.87 3.46
1044 1080 3.553508 CCGTACGTTTCTTCCTTCCTTCA 60.554 47.826 15.21 0.00 0.00 3.02
1046 1082 4.326548 CGTACGTTTCTTCCTTCCTTCATC 59.673 45.833 7.22 0.00 0.00 2.92
1048 1084 2.673368 CGTTTCTTCCTTCCTTCATCCG 59.327 50.000 0.00 0.00 0.00 4.18
1050 1086 0.541863 TCTTCCTTCCTTCATCCGCC 59.458 55.000 0.00 0.00 0.00 6.13
1052 1088 1.204786 TTCCTTCCTTCATCCGCCCA 61.205 55.000 0.00 0.00 0.00 5.36
1070 1108 4.530857 CCCGGAAAGATCGCGCCT 62.531 66.667 0.73 0.00 0.00 5.52
1071 1109 3.264897 CCGGAAAGATCGCGCCTG 61.265 66.667 0.00 0.00 0.00 4.85
1131 1169 0.814457 TGCTTGCTTCCGTGTTGTTT 59.186 45.000 0.00 0.00 0.00 2.83
1132 1170 1.202245 TGCTTGCTTCCGTGTTGTTTC 60.202 47.619 0.00 0.00 0.00 2.78
1133 1171 1.065551 GCTTGCTTCCGTGTTGTTTCT 59.934 47.619 0.00 0.00 0.00 2.52
1134 1172 2.854805 GCTTGCTTCCGTGTTGTTTCTC 60.855 50.000 0.00 0.00 0.00 2.87
1135 1173 0.934496 TGCTTCCGTGTTGTTTCTCG 59.066 50.000 0.00 0.00 0.00 4.04
1136 1174 0.935196 GCTTCCGTGTTGTTTCTCGT 59.065 50.000 0.00 0.00 0.00 4.18
1137 1175 1.332904 GCTTCCGTGTTGTTTCTCGTG 60.333 52.381 0.00 0.00 0.00 4.35
1138 1176 1.260561 CTTCCGTGTTGTTTCTCGTGG 59.739 52.381 0.00 0.00 0.00 4.94
1139 1177 1.155424 TCCGTGTTGTTTCTCGTGGC 61.155 55.000 0.00 0.00 0.00 5.01
1140 1178 1.083657 CGTGTTGTTTCTCGTGGCG 60.084 57.895 0.00 0.00 0.00 5.69
1141 1179 1.758319 CGTGTTGTTTCTCGTGGCGT 61.758 55.000 0.00 0.00 0.00 5.68
1142 1180 0.315869 GTGTTGTTTCTCGTGGCGTG 60.316 55.000 0.00 0.00 0.00 5.34
1143 1181 0.741574 TGTTGTTTCTCGTGGCGTGT 60.742 50.000 0.00 0.00 0.00 4.49
1246 1288 2.660064 GGTGGTCATGGACGAGCCT 61.660 63.158 0.00 0.00 33.82 4.58
1250 1292 4.147449 TCATGGACGAGCCTGCGG 62.147 66.667 0.00 0.00 37.63 5.69
1410 1455 1.911766 AGACCCCACCACAGGTACG 60.912 63.158 0.00 0.00 36.17 3.67
1411 1456 1.909781 GACCCCACCACAGGTACGA 60.910 63.158 0.00 0.00 36.17 3.43
1413 1458 2.660802 CCCACCACAGGTACGACC 59.339 66.667 0.00 0.00 38.99 4.79
1415 1460 2.260434 CACCACAGGTACGACCCG 59.740 66.667 0.00 0.00 39.75 5.28
1432 1478 1.226262 CGTCCCCCGAATCCCAATT 59.774 57.895 0.00 0.00 39.56 2.32
1461 1507 0.596082 CCCAATTGACCGCTCGTTTT 59.404 50.000 7.12 0.00 0.00 2.43
1487 1533 6.211515 CCCATCAAATCTCCAATTCGATTTC 58.788 40.000 0.00 0.00 37.66 2.17
1488 1534 6.040166 CCCATCAAATCTCCAATTCGATTTCT 59.960 38.462 0.00 0.00 37.66 2.52
1510 1557 9.545105 TTTCTTGTCAAATTATCTTGCACAAAT 57.455 25.926 0.00 0.00 31.80 2.32
1579 1627 1.506718 GGAGTGCGATCGACAGTCA 59.493 57.895 30.44 15.64 38.90 3.41
1581 1629 1.136872 GAGTGCGATCGACAGTCAGC 61.137 60.000 27.52 12.59 37.42 4.26
1591 1639 4.007644 CAGTCAGCCGTCCCAGCA 62.008 66.667 0.00 0.00 0.00 4.41
1592 1640 4.008933 AGTCAGCCGTCCCAGCAC 62.009 66.667 0.00 0.00 0.00 4.40
1593 1641 4.314440 GTCAGCCGTCCCAGCACA 62.314 66.667 0.00 0.00 0.00 4.57
1603 1666 2.032223 CCAGCACAGCAGCAGTCT 59.968 61.111 0.00 0.00 36.85 3.24
1616 1679 1.736645 CAGTCTGGTTGGTACGCGG 60.737 63.158 12.47 0.00 0.00 6.46
1637 1700 3.473625 GGTACTCCCCACAATAATTCCG 58.526 50.000 0.00 0.00 0.00 4.30
1654 1717 2.328099 CGCTTGCCACTCTTGGGTC 61.328 63.158 0.00 0.00 44.15 4.46
1726 1790 1.664629 TTCGCGTAACAAATTGTGCG 58.335 45.000 18.96 18.96 41.43 5.34
1739 1803 2.500509 TTGTGCGTTTGGGTTGAATC 57.499 45.000 0.00 0.00 0.00 2.52
1765 1829 3.620374 CAGTGCTACATTGACACCATCTC 59.380 47.826 0.00 0.00 34.83 2.75
1766 1830 3.517100 AGTGCTACATTGACACCATCTCT 59.483 43.478 0.00 0.00 34.83 3.10
1767 1831 4.019860 AGTGCTACATTGACACCATCTCTT 60.020 41.667 0.00 0.00 34.83 2.85
1768 1832 4.331168 GTGCTACATTGACACCATCTCTTC 59.669 45.833 0.00 0.00 0.00 2.87
1771 1835 5.645497 GCTACATTGACACCATCTCTTCTTT 59.355 40.000 0.00 0.00 0.00 2.52
1796 1862 4.625972 TTTCCAAACAAAGTCTCGGTTC 57.374 40.909 0.00 0.00 0.00 3.62
1806 1902 5.696724 ACAAAGTCTCGGTTCTAGTTTGATG 59.303 40.000 8.42 0.00 37.12 3.07
1832 1928 5.504665 CGACAGTTGCACTTGATTTCTCTTT 60.505 40.000 3.77 0.00 0.00 2.52
1833 1929 6.292865 CGACAGTTGCACTTGATTTCTCTTTA 60.293 38.462 3.77 0.00 0.00 1.85
1834 1930 6.963796 ACAGTTGCACTTGATTTCTCTTTAG 58.036 36.000 3.77 0.00 0.00 1.85
1835 1931 6.767902 ACAGTTGCACTTGATTTCTCTTTAGA 59.232 34.615 3.77 0.00 0.00 2.10
1836 1932 7.283127 ACAGTTGCACTTGATTTCTCTTTAGAA 59.717 33.333 3.77 0.00 40.03 2.10
1837 1933 7.589221 CAGTTGCACTTGATTTCTCTTTAGAAC 59.411 37.037 0.00 0.00 41.48 3.01
1838 1934 7.283127 AGTTGCACTTGATTTCTCTTTAGAACA 59.717 33.333 0.00 0.00 41.48 3.18
1839 1935 7.566760 TGCACTTGATTTCTCTTTAGAACAA 57.433 32.000 0.00 0.00 41.48 2.83
1840 1936 7.642669 TGCACTTGATTTCTCTTTAGAACAAG 58.357 34.615 13.00 13.00 44.09 3.16
1965 2061 1.134699 TCATCACCGATTGGAGCAGTC 60.135 52.381 5.81 0.00 39.21 3.51
1971 2067 2.304761 ACCGATTGGAGCAGTCCTTTAA 59.695 45.455 5.81 0.00 44.30 1.52
1972 2068 2.678336 CCGATTGGAGCAGTCCTTTAAC 59.322 50.000 0.00 0.00 44.30 2.01
1973 2069 3.334691 CGATTGGAGCAGTCCTTTAACA 58.665 45.455 0.00 0.00 44.30 2.41
1983 2079 4.740205 GCAGTCCTTTAACAAAGCTCAAAC 59.260 41.667 0.00 0.00 37.18 2.93
1985 2081 4.879545 AGTCCTTTAACAAAGCTCAAACGA 59.120 37.500 0.00 0.00 37.18 3.85
2021 2121 3.370104 AGAGTGAGTACAAGAGGATGGG 58.630 50.000 0.00 0.00 0.00 4.00
2028 2131 3.716872 AGTACAAGAGGATGGGTAATGGG 59.283 47.826 0.00 0.00 0.00 4.00
2127 2233 1.615392 ACTCACGGGTAACTTAAGCGT 59.385 47.619 1.29 0.55 0.00 5.07
2252 2370 0.042281 AACCTCCTACCCGTTAGCCT 59.958 55.000 0.00 0.00 0.00 4.58
2319 2437 8.008279 GTCTCGAGTTAACTGGTTGTTTAATTC 58.992 37.037 14.14 0.00 39.89 2.17
3279 3397 1.554617 TCACTCCGCTTCCAATCATCA 59.445 47.619 0.00 0.00 0.00 3.07
3288 3406 3.757493 GCTTCCAATCATCATCATCCTCC 59.243 47.826 0.00 0.00 0.00 4.30
3289 3407 4.506979 GCTTCCAATCATCATCATCCTCCT 60.507 45.833 0.00 0.00 0.00 3.69
3290 3408 4.904895 TCCAATCATCATCATCCTCCTC 57.095 45.455 0.00 0.00 0.00 3.71
3291 3409 4.500452 TCCAATCATCATCATCCTCCTCT 58.500 43.478 0.00 0.00 0.00 3.69
3292 3410 5.658474 TCCAATCATCATCATCCTCCTCTA 58.342 41.667 0.00 0.00 0.00 2.43
3302 3420 3.053320 TCATCCTCCTCTAGCTGACAAGA 60.053 47.826 0.00 0.00 0.00 3.02
3313 3431 6.993079 TCTAGCTGACAAGATTAGTTGTGAA 58.007 36.000 0.00 0.00 40.83 3.18
3317 3435 6.017605 AGCTGACAAGATTAGTTGTGAAACTG 60.018 38.462 1.42 0.00 40.83 3.16
3434 3576 2.181777 GCGGACATCACGAGCTCA 59.818 61.111 15.40 0.00 0.00 4.26
3677 3819 1.757306 CATAGGGGAGCGGCTGAAT 59.243 57.895 7.50 0.00 0.00 2.57
3684 3826 1.517242 GGAGCGGCTGAATAAGATGG 58.483 55.000 7.50 0.00 0.00 3.51
3906 4083 2.255406 AGGATGATCGGAGAAGGGATG 58.745 52.381 0.00 0.00 43.58 3.51
3927 4104 1.217585 CGTATGACCCATGCAGCGAG 61.218 60.000 0.00 0.00 0.00 5.03
3950 4127 0.725686 TAGTACTCACGCTGTCGAGC 59.274 55.000 0.00 0.00 42.37 5.03
3956 4133 0.179137 TCACGCTGTCGAGCCTTATG 60.179 55.000 0.00 0.00 42.91 1.90
3961 4138 1.804372 GCTGTCGAGCCTTATGGACTG 60.804 57.143 0.00 0.00 39.57 3.51
3962 4139 1.751351 CTGTCGAGCCTTATGGACTGA 59.249 52.381 0.00 0.00 31.48 3.41
3969 4146 1.419387 GCCTTATGGACTGAGGAGCAT 59.581 52.381 0.00 0.00 32.21 3.79
3971 4148 2.224475 CCTTATGGACTGAGGAGCATGG 60.224 54.545 0.00 0.00 32.21 3.66
3981 4158 1.747355 GAGGAGCATGGGTTGATGTTG 59.253 52.381 0.00 0.00 0.00 3.33
3988 4167 2.566833 TGGGTTGATGTTGTCCTCTG 57.433 50.000 0.00 0.00 0.00 3.35
4025 4209 2.755952 AGGGCCAACTCTTTTTGACT 57.244 45.000 6.18 0.00 0.00 3.41
4093 4281 1.195115 TAGTGGTAGCAGAAGCCTGG 58.805 55.000 0.00 0.00 43.56 4.45
4112 4300 4.272489 CTGGGCATTTCATCTTTCAGGTA 58.728 43.478 0.00 0.00 0.00 3.08
4113 4301 4.870636 TGGGCATTTCATCTTTCAGGTAT 58.129 39.130 0.00 0.00 0.00 2.73
4114 4302 6.012337 TGGGCATTTCATCTTTCAGGTATA 57.988 37.500 0.00 0.00 0.00 1.47
4115 4303 6.613699 TGGGCATTTCATCTTTCAGGTATAT 58.386 36.000 0.00 0.00 0.00 0.86
4116 4304 7.068702 TGGGCATTTCATCTTTCAGGTATATT 58.931 34.615 0.00 0.00 0.00 1.28
4161 4351 2.936498 GTCACCGTGATTACAAGGATGG 59.064 50.000 4.13 0.00 45.94 3.51
4217 4409 1.814394 TGTGTTCATCAGATGGCAAGC 59.186 47.619 10.67 0.00 0.00 4.01
4220 4415 0.749091 TTCATCAGATGGCAAGCGGG 60.749 55.000 10.67 0.00 0.00 6.13
4235 4430 2.043953 GGGGGTGTTGGCTGATCC 60.044 66.667 0.00 0.00 0.00 3.36
4249 4444 3.273434 GCTGATCCTTGTTGTGATGCTA 58.727 45.455 0.00 0.00 0.00 3.49
4250 4445 3.881688 GCTGATCCTTGTTGTGATGCTAT 59.118 43.478 0.00 0.00 0.00 2.97
4251 4446 4.337555 GCTGATCCTTGTTGTGATGCTATT 59.662 41.667 0.00 0.00 0.00 1.73
4253 4448 4.096833 TGATCCTTGTTGTGATGCTATTGC 59.903 41.667 0.00 0.00 40.20 3.56
4254 4449 3.689347 TCCTTGTTGTGATGCTATTGCT 58.311 40.909 0.00 0.00 40.48 3.91
4256 4451 5.252547 TCCTTGTTGTGATGCTATTGCTTA 58.747 37.500 0.00 0.00 40.48 3.09
4257 4452 5.123820 TCCTTGTTGTGATGCTATTGCTTAC 59.876 40.000 0.00 0.00 40.48 2.34
4258 4453 5.124457 CCTTGTTGTGATGCTATTGCTTACT 59.876 40.000 0.00 0.00 40.48 2.24
4259 4454 5.550232 TGTTGTGATGCTATTGCTTACTG 57.450 39.130 0.00 0.00 40.48 2.74
4260 4455 4.142622 TGTTGTGATGCTATTGCTTACTGC 60.143 41.667 0.00 0.00 40.48 4.40
4261 4456 3.877559 TGTGATGCTATTGCTTACTGCT 58.122 40.909 0.00 0.00 43.37 4.24
4262 4457 4.264253 TGTGATGCTATTGCTTACTGCTT 58.736 39.130 0.00 0.00 43.37 3.91
4263 4458 5.427378 TGTGATGCTATTGCTTACTGCTTA 58.573 37.500 0.00 0.00 43.37 3.09
4264 4459 5.525012 TGTGATGCTATTGCTTACTGCTTAG 59.475 40.000 0.00 0.00 43.37 2.18
4265 4460 5.755375 GTGATGCTATTGCTTACTGCTTAGA 59.245 40.000 0.00 0.00 43.37 2.10
4266 4461 5.987953 TGATGCTATTGCTTACTGCTTAGAG 59.012 40.000 0.00 0.00 43.37 2.43
4267 4462 4.122776 TGCTATTGCTTACTGCTTAGAGC 58.877 43.478 0.00 0.00 43.37 4.09
4315 4510 1.201424 GGAACTGGACCGGGATAGTT 58.799 55.000 16.22 16.22 36.18 2.24
4331 4532 1.053424 AGTTGTTGAGGGGCGTAGAA 58.947 50.000 0.00 0.00 0.00 2.10
4344 4545 3.864003 GGGCGTAGAACATCTGAAGTTAC 59.136 47.826 0.00 0.00 0.00 2.50
4360 4561 3.846360 AGTTACGAACAGAGCATGGTAC 58.154 45.455 0.00 0.00 0.00 3.34
4362 4563 4.703575 AGTTACGAACAGAGCATGGTACTA 59.296 41.667 0.00 0.00 0.00 1.82
4363 4564 3.784701 ACGAACAGAGCATGGTACTAG 57.215 47.619 0.00 0.00 0.00 2.57
4364 4565 3.090037 ACGAACAGAGCATGGTACTAGT 58.910 45.455 0.00 0.00 0.00 2.57
4366 4567 3.696898 GAACAGAGCATGGTACTAGTCG 58.303 50.000 0.00 0.00 0.00 4.18
4367 4568 3.000684 ACAGAGCATGGTACTAGTCGA 57.999 47.619 0.00 0.00 0.00 4.20
4368 4569 2.683867 ACAGAGCATGGTACTAGTCGAC 59.316 50.000 7.70 7.70 0.00 4.20
4369 4570 2.683362 CAGAGCATGGTACTAGTCGACA 59.317 50.000 19.50 2.84 0.00 4.35
4370 4571 2.946329 AGAGCATGGTACTAGTCGACAG 59.054 50.000 19.50 14.94 0.00 3.51
4371 4572 1.405821 AGCATGGTACTAGTCGACAGC 59.594 52.381 19.50 7.10 0.00 4.40
4372 4573 1.536284 GCATGGTACTAGTCGACAGCC 60.536 57.143 19.50 11.92 0.00 4.85
4373 4574 1.749063 CATGGTACTAGTCGACAGCCA 59.251 52.381 19.50 16.86 0.00 4.75
4374 4575 1.171308 TGGTACTAGTCGACAGCCAC 58.829 55.000 19.50 13.15 0.00 5.01
4403 4609 2.677836 GAGTGGCATTAACGATTCTGCA 59.322 45.455 0.00 0.00 36.34 4.41
4409 4615 3.485877 GCATTAACGATTCTGCACAGGTC 60.486 47.826 0.00 0.00 34.77 3.85
4410 4616 1.990799 TAACGATTCTGCACAGGTCG 58.009 50.000 18.27 18.27 40.30 4.79
4414 4620 1.523758 GATTCTGCACAGGTCGGTTT 58.476 50.000 0.00 0.00 0.00 3.27
4453 4662 2.048597 CACAGCGCGGTAGGTGAA 60.049 61.111 20.29 0.00 41.72 3.18
4454 4663 1.447838 CACAGCGCGGTAGGTGAAT 60.448 57.895 20.29 0.00 41.72 2.57
4455 4664 0.179121 CACAGCGCGGTAGGTGAATA 60.179 55.000 20.29 0.00 41.72 1.75
4456 4665 0.102481 ACAGCGCGGTAGGTGAATAG 59.898 55.000 12.68 0.00 41.72 1.73
4457 4666 0.102481 CAGCGCGGTAGGTGAATAGT 59.898 55.000 11.92 0.00 41.72 2.12
4458 4667 1.335810 CAGCGCGGTAGGTGAATAGTA 59.664 52.381 11.92 0.00 41.72 1.82
4459 4668 1.336125 AGCGCGGTAGGTGAATAGTAC 59.664 52.381 10.12 0.00 0.00 2.73
4460 4669 1.066002 GCGCGGTAGGTGAATAGTACA 59.934 52.381 8.83 0.00 0.00 2.90
4461 4670 2.288030 GCGCGGTAGGTGAATAGTACAT 60.288 50.000 8.83 0.00 0.00 2.29
4462 4671 3.058016 GCGCGGTAGGTGAATAGTACATA 60.058 47.826 8.83 0.00 0.00 2.29
4463 4672 4.470462 CGCGGTAGGTGAATAGTACATAC 58.530 47.826 0.00 0.00 35.29 2.39
4464 4673 4.214971 CGCGGTAGGTGAATAGTACATACT 59.785 45.833 0.00 0.00 36.06 2.12
4465 4674 5.616424 CGCGGTAGGTGAATAGTACATACTC 60.616 48.000 0.00 0.00 36.06 2.59
4466 4675 5.335504 GCGGTAGGTGAATAGTACATACTCC 60.336 48.000 0.00 0.00 36.06 3.85
4467 4676 5.106791 CGGTAGGTGAATAGTACATACTCCG 60.107 48.000 0.00 0.00 36.06 4.63
4468 4677 6.000219 GGTAGGTGAATAGTACATACTCCGA 59.000 44.000 0.00 0.00 36.06 4.55
4469 4678 6.488006 GGTAGGTGAATAGTACATACTCCGAA 59.512 42.308 0.00 0.00 36.06 4.30
4470 4679 7.176340 GGTAGGTGAATAGTACATACTCCGAAT 59.824 40.741 0.00 0.00 36.06 3.34
4471 4680 6.982852 AGGTGAATAGTACATACTCCGAATG 58.017 40.000 0.00 0.00 37.73 2.67
4472 4681 6.550108 AGGTGAATAGTACATACTCCGAATGT 59.450 38.462 0.00 0.00 40.57 2.71
4473 4682 7.069578 AGGTGAATAGTACATACTCCGAATGTT 59.930 37.037 0.00 0.00 38.49 2.71
4474 4683 8.355169 GGTGAATAGTACATACTCCGAATGTTA 58.645 37.037 0.00 0.00 38.49 2.41
4475 4684 9.178427 GTGAATAGTACATACTCCGAATGTTAC 57.822 37.037 0.00 0.00 38.49 2.50
4476 4685 8.071967 TGAATAGTACATACTCCGAATGTTACG 58.928 37.037 0.00 0.00 38.49 3.18
4477 4686 5.824904 AGTACATACTCCGAATGTTACGT 57.175 39.130 0.00 0.00 38.49 3.57
4478 4687 5.814783 AGTACATACTCCGAATGTTACGTC 58.185 41.667 0.00 0.00 38.49 4.34
4479 4688 4.978083 ACATACTCCGAATGTTACGTCT 57.022 40.909 0.00 0.00 33.83 4.18
4480 4689 6.763135 AGTACATACTCCGAATGTTACGTCTA 59.237 38.462 0.00 0.00 38.49 2.59
4481 4690 6.057627 ACATACTCCGAATGTTACGTCTAG 57.942 41.667 0.00 0.00 33.83 2.43
4482 4691 5.819379 ACATACTCCGAATGTTACGTCTAGA 59.181 40.000 0.00 0.00 33.83 2.43
4483 4692 6.485984 ACATACTCCGAATGTTACGTCTAGAT 59.514 38.462 0.00 0.00 33.83 1.98
4484 4693 5.831702 ACTCCGAATGTTACGTCTAGATT 57.168 39.130 0.00 0.00 0.00 2.40
4485 4694 6.205101 ACTCCGAATGTTACGTCTAGATTT 57.795 37.500 0.00 0.00 0.00 2.17
4486 4695 6.628185 ACTCCGAATGTTACGTCTAGATTTT 58.372 36.000 0.00 0.00 0.00 1.82
4487 4696 7.095270 ACTCCGAATGTTACGTCTAGATTTTT 58.905 34.615 0.00 0.00 0.00 1.94
4517 4726 4.966965 TTTTGGTTCTGTTTGCTTACGA 57.033 36.364 0.00 0.00 0.00 3.43
4518 4727 4.545823 TTTGGTTCTGTTTGCTTACGAG 57.454 40.909 0.00 0.00 0.00 4.18
4519 4728 2.489971 TGGTTCTGTTTGCTTACGAGG 58.510 47.619 0.00 0.00 0.00 4.63
4520 4729 1.804748 GGTTCTGTTTGCTTACGAGGG 59.195 52.381 0.00 0.00 0.00 4.30
4521 4730 1.197036 GTTCTGTTTGCTTACGAGGGC 59.803 52.381 0.00 0.00 0.00 5.19
4522 4731 0.394938 TCTGTTTGCTTACGAGGGCA 59.605 50.000 0.00 0.00 36.62 5.36
4523 4732 0.798776 CTGTTTGCTTACGAGGGCAG 59.201 55.000 0.00 0.00 39.68 4.85
4524 4733 0.107831 TGTTTGCTTACGAGGGCAGT 59.892 50.000 0.00 0.00 39.68 4.40
4525 4734 0.517316 GTTTGCTTACGAGGGCAGTG 59.483 55.000 0.00 0.00 39.68 3.66
4526 4735 0.394938 TTTGCTTACGAGGGCAGTGA 59.605 50.000 0.00 0.00 39.68 3.41
4527 4736 0.037326 TTGCTTACGAGGGCAGTGAG 60.037 55.000 0.00 0.00 39.68 3.51
4528 4737 0.898326 TGCTTACGAGGGCAGTGAGA 60.898 55.000 0.00 0.00 34.22 3.27
4529 4738 0.461961 GCTTACGAGGGCAGTGAGAT 59.538 55.000 0.00 0.00 0.00 2.75
4530 4739 1.804372 GCTTACGAGGGCAGTGAGATG 60.804 57.143 0.00 0.00 0.00 2.90
4531 4740 1.751351 CTTACGAGGGCAGTGAGATGA 59.249 52.381 0.00 0.00 0.00 2.92
4532 4741 2.073252 TACGAGGGCAGTGAGATGAT 57.927 50.000 0.00 0.00 0.00 2.45
4533 4742 0.749649 ACGAGGGCAGTGAGATGATC 59.250 55.000 0.00 0.00 0.00 2.92
4534 4743 0.749049 CGAGGGCAGTGAGATGATCA 59.251 55.000 0.00 0.00 34.79 2.92
4535 4744 1.343789 CGAGGGCAGTGAGATGATCAT 59.656 52.381 8.25 8.25 40.92 2.45
4536 4745 2.768698 GAGGGCAGTGAGATGATCATG 58.231 52.381 14.30 0.00 40.92 3.07
4537 4746 1.420514 AGGGCAGTGAGATGATCATGG 59.579 52.381 14.30 0.00 40.92 3.66
4538 4747 1.544982 GGGCAGTGAGATGATCATGGG 60.545 57.143 14.30 0.00 40.92 4.00
4539 4748 1.419012 GGCAGTGAGATGATCATGGGA 59.581 52.381 14.30 0.00 40.92 4.37
4540 4749 2.158711 GGCAGTGAGATGATCATGGGAA 60.159 50.000 14.30 0.00 40.92 3.97
4541 4750 3.548770 GCAGTGAGATGATCATGGGAAA 58.451 45.455 14.30 0.00 40.92 3.13
4542 4751 3.564644 GCAGTGAGATGATCATGGGAAAG 59.435 47.826 14.30 0.28 40.92 2.62
4543 4752 4.685302 GCAGTGAGATGATCATGGGAAAGA 60.685 45.833 14.30 0.00 40.92 2.52
4544 4753 5.434408 CAGTGAGATGATCATGGGAAAGAA 58.566 41.667 14.30 0.00 40.92 2.52
4545 4754 5.527951 CAGTGAGATGATCATGGGAAAGAAG 59.472 44.000 14.30 0.00 40.92 2.85
4546 4755 5.427806 AGTGAGATGATCATGGGAAAGAAGA 59.572 40.000 14.30 0.00 40.92 2.87
4547 4756 6.069789 AGTGAGATGATCATGGGAAAGAAGAA 60.070 38.462 14.30 0.00 40.92 2.52
4548 4757 6.600822 GTGAGATGATCATGGGAAAGAAGAAA 59.399 38.462 14.30 0.00 40.92 2.52
4549 4758 7.121759 GTGAGATGATCATGGGAAAGAAGAAAA 59.878 37.037 14.30 0.00 40.92 2.29
4550 4759 7.670979 TGAGATGATCATGGGAAAGAAGAAAAA 59.329 33.333 14.30 0.00 31.12 1.94
4575 4784 8.463930 AAAAACAGGAATGTTAACTCATCAGA 57.536 30.769 7.22 0.00 0.00 3.27
4577 4786 5.181748 ACAGGAATGTTAACTCATCAGAGC 58.818 41.667 7.22 0.00 46.09 4.09
4578 4787 5.181009 CAGGAATGTTAACTCATCAGAGCA 58.819 41.667 7.22 0.00 46.09 4.26
4579 4788 5.821470 CAGGAATGTTAACTCATCAGAGCAT 59.179 40.000 7.22 0.00 46.09 3.79
4580 4789 5.821470 AGGAATGTTAACTCATCAGAGCATG 59.179 40.000 7.22 0.00 46.09 4.06
4581 4790 5.496133 AATGTTAACTCATCAGAGCATGC 57.504 39.130 10.51 10.51 46.09 4.06
4582 4791 4.212143 TGTTAACTCATCAGAGCATGCT 57.788 40.909 22.92 22.92 46.09 3.79
4583 4792 3.937079 TGTTAACTCATCAGAGCATGCTG 59.063 43.478 28.27 13.30 46.09 4.41
4588 4797 2.588439 TCAGAGCATGCTGAGGGC 59.412 61.111 28.27 10.41 39.84 5.19
4599 4808 0.950116 GCTGAGGGCATCTACAATGC 59.050 55.000 0.00 1.40 43.85 3.56
4600 4809 1.748244 GCTGAGGGCATCTACAATGCA 60.748 52.381 11.69 0.00 46.21 3.96
4601 4810 2.646930 CTGAGGGCATCTACAATGCAA 58.353 47.619 11.69 0.00 46.21 4.08
4602 4811 3.018856 CTGAGGGCATCTACAATGCAAA 58.981 45.455 11.69 0.00 46.21 3.68
4603 4812 3.018856 TGAGGGCATCTACAATGCAAAG 58.981 45.455 11.69 0.00 46.21 2.77
4604 4813 2.360165 GAGGGCATCTACAATGCAAAGG 59.640 50.000 11.69 0.00 46.21 3.11
4605 4814 2.102578 GGGCATCTACAATGCAAAGGT 58.897 47.619 11.69 0.00 46.21 3.50
4606 4815 2.159198 GGGCATCTACAATGCAAAGGTG 60.159 50.000 11.69 0.00 46.21 4.00
4618 4827 0.171007 CAAAGGTGCTTGTATGGGCG 59.829 55.000 0.00 0.00 0.00 6.13
4619 4828 1.595093 AAAGGTGCTTGTATGGGCGC 61.595 55.000 0.00 0.00 38.12 6.53
4620 4829 2.438434 GGTGCTTGTATGGGCGCT 60.438 61.111 7.64 0.00 38.76 5.92
4621 4830 2.046285 GGTGCTTGTATGGGCGCTT 61.046 57.895 7.64 0.00 38.76 4.68
4622 4831 0.746563 GGTGCTTGTATGGGCGCTTA 60.747 55.000 7.64 0.00 38.76 3.09
4623 4832 0.657840 GTGCTTGTATGGGCGCTTAG 59.342 55.000 7.64 0.00 36.23 2.18
4624 4833 0.539518 TGCTTGTATGGGCGCTTAGA 59.460 50.000 7.64 0.00 0.00 2.10
4625 4834 0.938008 GCTTGTATGGGCGCTTAGAC 59.062 55.000 7.64 4.73 0.00 2.59
4626 4835 1.742411 GCTTGTATGGGCGCTTAGACA 60.742 52.381 7.64 7.61 0.00 3.41
4627 4836 2.627945 CTTGTATGGGCGCTTAGACAA 58.372 47.619 18.38 18.38 0.00 3.18
4628 4837 3.206150 CTTGTATGGGCGCTTAGACAAT 58.794 45.455 19.26 1.25 0.00 2.71
4629 4838 4.377021 CTTGTATGGGCGCTTAGACAATA 58.623 43.478 19.26 0.38 0.00 1.90
4630 4839 3.990092 TGTATGGGCGCTTAGACAATAG 58.010 45.455 7.64 0.00 0.00 1.73
4631 4840 3.639561 TGTATGGGCGCTTAGACAATAGA 59.360 43.478 7.64 0.00 0.00 1.98
4632 4841 3.838244 ATGGGCGCTTAGACAATAGAA 57.162 42.857 7.64 0.00 0.00 2.10
4633 4842 3.620427 TGGGCGCTTAGACAATAGAAA 57.380 42.857 7.64 0.00 0.00 2.52
4634 4843 3.531538 TGGGCGCTTAGACAATAGAAAG 58.468 45.455 7.64 0.00 0.00 2.62
4635 4844 3.196901 TGGGCGCTTAGACAATAGAAAGA 59.803 43.478 7.64 0.00 0.00 2.52
4636 4845 4.189231 GGGCGCTTAGACAATAGAAAGAA 58.811 43.478 7.64 0.00 0.00 2.52
4637 4846 4.816925 GGGCGCTTAGACAATAGAAAGAAT 59.183 41.667 7.64 0.00 0.00 2.40
4638 4847 5.297029 GGGCGCTTAGACAATAGAAAGAATT 59.703 40.000 7.64 0.00 0.00 2.17
4639 4848 6.482308 GGGCGCTTAGACAATAGAAAGAATTA 59.518 38.462 7.64 0.00 0.00 1.40
4640 4849 7.012044 GGGCGCTTAGACAATAGAAAGAATTAA 59.988 37.037 7.64 0.00 0.00 1.40
4641 4850 7.851472 GGCGCTTAGACAATAGAAAGAATTAAC 59.149 37.037 7.64 0.00 0.00 2.01
4642 4851 7.579450 GCGCTTAGACAATAGAAAGAATTAACG 59.421 37.037 0.00 0.00 0.00 3.18
4643 4852 8.056571 CGCTTAGACAATAGAAAGAATTAACGG 58.943 37.037 0.00 0.00 0.00 4.44
4644 4853 7.851472 GCTTAGACAATAGAAAGAATTAACGGC 59.149 37.037 0.00 0.00 0.00 5.68
4645 4854 6.345920 AGACAATAGAAAGAATTAACGGCG 57.654 37.500 4.80 4.80 0.00 6.46
4646 4855 6.103997 AGACAATAGAAAGAATTAACGGCGA 58.896 36.000 16.62 0.00 0.00 5.54
4647 4856 6.255887 AGACAATAGAAAGAATTAACGGCGAG 59.744 38.462 16.62 0.00 0.00 5.03
4648 4857 5.873164 ACAATAGAAAGAATTAACGGCGAGT 59.127 36.000 16.62 2.98 0.00 4.18
4649 4858 6.035758 ACAATAGAAAGAATTAACGGCGAGTC 59.964 38.462 16.62 0.00 0.00 3.36
4650 4859 4.189639 AGAAAGAATTAACGGCGAGTCT 57.810 40.909 16.62 1.77 0.00 3.24
4651 4860 5.320549 AGAAAGAATTAACGGCGAGTCTA 57.679 39.130 16.62 0.00 0.00 2.59
4652 4861 5.100943 AGAAAGAATTAACGGCGAGTCTAC 58.899 41.667 16.62 3.94 0.00 2.59
4653 4862 3.433513 AGAATTAACGGCGAGTCTACC 57.566 47.619 16.62 0.00 0.00 3.18
4654 4863 3.022406 AGAATTAACGGCGAGTCTACCT 58.978 45.455 16.62 0.00 0.00 3.08
4655 4864 4.202441 AGAATTAACGGCGAGTCTACCTA 58.798 43.478 16.62 0.00 0.00 3.08
4656 4865 4.275443 AGAATTAACGGCGAGTCTACCTAG 59.725 45.833 16.62 0.00 0.00 3.02
4657 4866 1.303309 TAACGGCGAGTCTACCTAGC 58.697 55.000 16.62 0.00 40.72 3.42
4658 4867 1.712977 AACGGCGAGTCTACCTAGCG 61.713 60.000 16.62 0.00 42.21 4.26
4659 4868 2.894565 CGGCGAGTCTACCTAGCGG 61.895 68.421 0.00 0.00 42.21 5.52
4660 4869 2.332159 GCGAGTCTACCTAGCGGC 59.668 66.667 0.00 0.00 31.94 6.53
4661 4870 3.032339 CGAGTCTACCTAGCGGCC 58.968 66.667 0.00 0.00 0.00 6.13
4662 4871 2.894565 CGAGTCTACCTAGCGGCCG 61.895 68.421 24.05 24.05 0.00 6.13
4663 4872 2.518825 AGTCTACCTAGCGGCCGG 60.519 66.667 29.38 12.94 0.00 6.13
4664 4873 4.281947 GTCTACCTAGCGGCCGGC 62.282 72.222 29.38 21.18 44.05 6.13
4681 4890 4.827087 CTGCTCGCTGGGCATCGT 62.827 66.667 3.62 0.00 39.07 3.73
4683 4892 4.819761 GCTCGCTGGGCATCGTGA 62.820 66.667 0.00 0.00 0.00 4.35
4684 4893 2.584418 CTCGCTGGGCATCGTGAG 60.584 66.667 0.00 0.00 0.00 3.51
4685 4894 4.819761 TCGCTGGGCATCGTGAGC 62.820 66.667 0.00 0.00 0.00 4.26
4700 4909 3.750373 GAGCGGCCGGCCTGAAATA 62.750 63.158 41.01 0.00 45.17 1.40
4701 4910 3.279875 GCGGCCGGCCTGAAATAG 61.280 66.667 41.01 25.35 34.80 1.73
4702 4911 2.504032 CGGCCGGCCTGAAATAGA 59.496 61.111 41.01 0.00 0.00 1.98
4703 4912 1.153249 CGGCCGGCCTGAAATAGAA 60.153 57.895 41.01 0.00 0.00 2.10
4704 4913 0.535102 CGGCCGGCCTGAAATAGAAT 60.535 55.000 41.01 0.00 0.00 2.40
4705 4914 1.692411 GGCCGGCCTGAAATAGAATT 58.308 50.000 38.76 0.00 0.00 2.17
4706 4915 2.031870 GGCCGGCCTGAAATAGAATTT 58.968 47.619 38.76 0.00 0.00 1.82
4707 4916 2.430694 GGCCGGCCTGAAATAGAATTTT 59.569 45.455 38.76 0.00 0.00 1.82
4708 4917 3.447742 GCCGGCCTGAAATAGAATTTTG 58.552 45.455 18.11 0.00 0.00 2.44
4709 4918 3.119137 GCCGGCCTGAAATAGAATTTTGT 60.119 43.478 18.11 0.00 0.00 2.83
4710 4919 4.620567 GCCGGCCTGAAATAGAATTTTGTT 60.621 41.667 18.11 0.00 0.00 2.83
4711 4920 4.864247 CCGGCCTGAAATAGAATTTTGTTG 59.136 41.667 0.00 0.00 0.00 3.33
4712 4921 5.469479 CGGCCTGAAATAGAATTTTGTTGT 58.531 37.500 0.00 0.00 0.00 3.32
4713 4922 5.572896 CGGCCTGAAATAGAATTTTGTTGTC 59.427 40.000 0.00 0.00 0.00 3.18
4714 4923 5.869344 GGCCTGAAATAGAATTTTGTTGTCC 59.131 40.000 0.00 0.00 0.00 4.02
4715 4924 5.869344 GCCTGAAATAGAATTTTGTTGTCCC 59.131 40.000 0.00 0.00 0.00 4.46
4716 4925 6.295292 GCCTGAAATAGAATTTTGTTGTCCCT 60.295 38.462 0.00 0.00 0.00 4.20
4717 4926 7.093945 GCCTGAAATAGAATTTTGTTGTCCCTA 60.094 37.037 0.00 0.00 0.00 3.53
4718 4927 8.802267 CCTGAAATAGAATTTTGTTGTCCCTAA 58.198 33.333 0.00 0.00 0.00 2.69
4730 4939 9.762381 TTTTGTTGTCCCTAATCTATAAATGGT 57.238 29.630 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.867403 GTGTGAGCAATTAATGAAGAGGAAAAA 59.133 33.333 0.00 0.00 0.00 1.94
32 33 3.407424 AATGAGTAGCAAGCAGTGTGA 57.593 42.857 0.00 0.00 0.00 3.58
161 165 3.055675 TGACGTTGAATTTCCCGAGGTAT 60.056 43.478 11.17 0.00 0.00 2.73
190 194 9.853555 TTTACAAGGAAATACTTATGTTGCATG 57.146 29.630 0.00 0.00 0.00 4.06
209 213 6.969366 TGGCATGGATCGATAATTTTACAAG 58.031 36.000 0.00 0.00 0.00 3.16
213 217 5.353956 CGGATGGCATGGATCGATAATTTTA 59.646 40.000 3.81 0.00 0.00 1.52
225 229 1.153107 CTGCTTCGGATGGCATGGA 60.153 57.895 3.81 0.00 37.83 3.41
335 339 2.573009 TGTCTGAGCATCCATGAAAGGA 59.427 45.455 0.00 0.00 43.01 3.36
336 340 2.995283 TGTCTGAGCATCCATGAAAGG 58.005 47.619 0.00 0.00 0.00 3.11
338 342 4.320421 CGTTTTGTCTGAGCATCCATGAAA 60.320 41.667 0.00 0.00 0.00 2.69
345 349 2.413453 GAGACCGTTTTGTCTGAGCATC 59.587 50.000 0.00 0.00 45.41 3.91
348 352 2.062519 GAGAGACCGTTTTGTCTGAGC 58.937 52.381 0.00 0.00 45.41 4.26
349 353 2.031069 TCGAGAGACCGTTTTGTCTGAG 60.031 50.000 0.00 0.00 45.41 3.35
360 364 4.555360 CGCTGATAAATTATCGAGAGACCG 59.445 45.833 8.30 3.50 46.97 4.79
361 365 4.324936 GCGCTGATAAATTATCGAGAGACC 59.675 45.833 0.00 0.00 46.97 3.85
403 407 4.796618 GCCACTCTTGTTTTCTAGTCGAGT 60.797 45.833 0.00 0.00 0.00 4.18
412 416 3.118542 CTGCAAAGCCACTCTTGTTTTC 58.881 45.455 0.00 0.00 34.67 2.29
422 428 2.154462 ACTATGTGACTGCAAAGCCAC 58.846 47.619 0.00 0.00 0.00 5.01
425 431 2.417933 CAGGACTATGTGACTGCAAAGC 59.582 50.000 0.00 0.00 0.00 3.51
436 442 2.497273 GCATTTTTGCCCAGGACTATGT 59.503 45.455 0.00 0.00 0.00 2.29
437 443 3.169355 GCATTTTTGCCCAGGACTATG 57.831 47.619 0.00 0.00 0.00 2.23
460 466 4.215399 TCTTTGAACCAACCATCGACATTC 59.785 41.667 0.00 0.00 0.00 2.67
529 535 5.113502 AGTGCATCTTTTTCTTTCCTTCG 57.886 39.130 0.00 0.00 0.00 3.79
530 536 8.871686 TTTTAGTGCATCTTTTTCTTTCCTTC 57.128 30.769 0.00 0.00 0.00 3.46
534 540 8.816640 TGGATTTTAGTGCATCTTTTTCTTTC 57.183 30.769 0.00 0.00 0.00 2.62
537 543 7.820872 CCAATGGATTTTAGTGCATCTTTTTCT 59.179 33.333 0.00 0.00 29.28 2.52
538 544 7.603784 ACCAATGGATTTTAGTGCATCTTTTTC 59.396 33.333 6.16 0.00 29.28 2.29
600 607 6.538742 TGGGCGTTTTTATGATTTTGTTTGAA 59.461 30.769 0.00 0.00 0.00 2.69
601 608 6.018669 GTGGGCGTTTTTATGATTTTGTTTGA 60.019 34.615 0.00 0.00 0.00 2.69
602 609 6.132724 GTGGGCGTTTTTATGATTTTGTTTG 58.867 36.000 0.00 0.00 0.00 2.93
605 612 4.202264 TGGTGGGCGTTTTTATGATTTTGT 60.202 37.500 0.00 0.00 0.00 2.83
606 613 4.310769 TGGTGGGCGTTTTTATGATTTTG 58.689 39.130 0.00 0.00 0.00 2.44
611 618 1.614413 GGTTGGTGGGCGTTTTTATGA 59.386 47.619 0.00 0.00 0.00 2.15
614 621 1.481871 TTGGTTGGTGGGCGTTTTTA 58.518 45.000 0.00 0.00 0.00 1.52
635 642 2.981805 GTTGTATTTCGGGCGTTTTTCC 59.018 45.455 0.00 0.00 0.00 3.13
636 643 3.630101 TGTTGTATTTCGGGCGTTTTTC 58.370 40.909 0.00 0.00 0.00 2.29
637 644 3.067040 ACTGTTGTATTTCGGGCGTTTTT 59.933 39.130 0.00 0.00 0.00 1.94
849 869 0.907486 TTGGCCAGTGAGAGAGATGG 59.093 55.000 5.11 0.00 35.84 3.51
850 870 1.738365 CGTTGGCCAGTGAGAGAGATG 60.738 57.143 5.11 0.00 0.00 2.90
851 871 0.534412 CGTTGGCCAGTGAGAGAGAT 59.466 55.000 5.11 0.00 0.00 2.75
852 872 1.967535 CGTTGGCCAGTGAGAGAGA 59.032 57.895 5.11 0.00 0.00 3.10
853 873 1.739562 GCGTTGGCCAGTGAGAGAG 60.740 63.158 5.11 0.00 0.00 3.20
854 874 2.343758 GCGTTGGCCAGTGAGAGA 59.656 61.111 5.11 0.00 0.00 3.10
910 933 2.766651 GGAGTGGCGGTATGGGGA 60.767 66.667 0.00 0.00 0.00 4.81
1039 1075 4.856801 CGGGTGGGCGGATGAAGG 62.857 72.222 0.00 0.00 0.00 3.46
1044 1080 4.109675 CTTTCCGGGTGGGCGGAT 62.110 66.667 0.00 0.00 33.97 4.18
1046 1082 4.109675 ATCTTTCCGGGTGGGCGG 62.110 66.667 0.00 0.00 35.24 6.13
1048 1084 2.513897 CGATCTTTCCGGGTGGGC 60.514 66.667 0.00 0.00 35.24 5.36
1050 1086 2.890474 CGCGATCTTTCCGGGTGG 60.890 66.667 0.00 0.00 35.63 4.61
1052 1088 4.832608 GGCGCGATCTTTCCGGGT 62.833 66.667 12.10 0.00 41.20 5.28
1063 1101 1.363145 CGGAATTAAACCAGGCGCGA 61.363 55.000 12.10 0.00 0.00 5.87
1070 1108 2.563702 GTATCGCCCGGAATTAAACCA 58.436 47.619 0.73 0.00 0.00 3.67
1071 1109 1.528161 CGTATCGCCCGGAATTAAACC 59.472 52.381 0.73 0.00 0.00 3.27
1131 1169 2.279186 CACACACACGCCACGAGA 60.279 61.111 0.00 0.00 0.00 4.04
1132 1170 2.584970 ACACACACACGCCACGAG 60.585 61.111 0.00 0.00 0.00 4.18
1133 1171 2.888051 CACACACACACGCCACGA 60.888 61.111 0.00 0.00 0.00 4.35
1134 1172 4.589700 GCACACACACACGCCACG 62.590 66.667 0.00 0.00 0.00 4.94
1135 1173 3.453491 CTGCACACACACACGCCAC 62.453 63.158 0.00 0.00 0.00 5.01
1136 1174 3.201297 CTGCACACACACACGCCA 61.201 61.111 0.00 0.00 0.00 5.69
1137 1175 3.952675 CCTGCACACACACACGCC 61.953 66.667 0.00 0.00 0.00 5.68
1138 1176 4.612536 GCCTGCACACACACACGC 62.613 66.667 0.00 0.00 0.00 5.34
1139 1177 4.297891 CGCCTGCACACACACACG 62.298 66.667 0.00 0.00 0.00 4.49
1140 1178 4.612536 GCGCCTGCACACACACAC 62.613 66.667 0.00 0.00 42.15 3.82
1209 1251 4.785453 CCTTCACCTCCCGCTGCC 62.785 72.222 0.00 0.00 0.00 4.85
1214 1256 2.347490 CACCACCTTCACCTCCCG 59.653 66.667 0.00 0.00 0.00 5.14
1410 1455 3.858225 GGATTCGGGGGACGGGTC 61.858 72.222 0.00 0.00 44.45 4.46
1413 1458 2.279037 AATTGGGATTCGGGGGACGG 62.279 60.000 0.00 0.00 44.45 4.79
1415 1460 1.493446 AGTAATTGGGATTCGGGGGAC 59.507 52.381 0.00 0.00 0.00 4.46
1422 1468 6.478512 TGGGCATTTTAGTAATTGGGATTC 57.521 37.500 0.00 0.00 0.00 2.52
1432 1478 3.129638 GCGGTCAATTGGGCATTTTAGTA 59.870 43.478 5.42 0.00 0.00 1.82
1461 1507 2.689471 CGAATTGGAGATTTGATGGGCA 59.311 45.455 0.00 0.00 0.00 5.36
1487 1533 9.630098 ACTATTTGTGCAAGATAATTTGACAAG 57.370 29.630 0.00 0.00 33.71 3.16
1488 1534 9.624697 GACTATTTGTGCAAGATAATTTGACAA 57.375 29.630 0.00 0.00 32.02 3.18
1510 1557 6.069556 ACCGGAGCCTATCTATCTATTGACTA 60.070 42.308 9.46 0.00 0.00 2.59
1591 1639 1.228063 CCAACCAGACTGCTGCTGT 60.228 57.895 12.15 12.15 40.91 4.40
1592 1640 0.035317 TACCAACCAGACTGCTGCTG 59.965 55.000 4.89 4.89 40.91 4.41
1593 1641 0.035458 GTACCAACCAGACTGCTGCT 59.965 55.000 0.00 0.00 40.91 4.24
1603 1666 1.876497 GAGTACCCGCGTACCAACCA 61.876 60.000 4.92 0.00 45.16 3.67
1616 1679 3.473625 CGGAATTATTGTGGGGAGTACC 58.526 50.000 0.00 0.00 39.11 3.34
1625 1688 2.164219 AGTGGCAAGCGGAATTATTGTG 59.836 45.455 0.00 0.00 0.00 3.33
1626 1689 2.423538 GAGTGGCAAGCGGAATTATTGT 59.576 45.455 0.00 0.00 0.00 2.71
1627 1690 2.684881 AGAGTGGCAAGCGGAATTATTG 59.315 45.455 0.00 0.00 0.00 1.90
1629 1692 2.684881 CAAGAGTGGCAAGCGGAATTAT 59.315 45.455 0.00 0.00 0.00 1.28
1630 1693 2.083774 CAAGAGTGGCAAGCGGAATTA 58.916 47.619 0.00 0.00 0.00 1.40
1632 1695 0.962356 CCAAGAGTGGCAAGCGGAAT 60.962 55.000 0.00 0.00 38.35 3.01
1637 1700 2.328099 CGACCCAAGAGTGGCAAGC 61.328 63.158 0.00 0.00 44.46 4.01
1726 1790 3.319755 CACTGCATGATTCAACCCAAAC 58.680 45.455 0.00 0.00 0.00 2.93
1739 1803 2.159476 GGTGTCAATGTAGCACTGCATG 60.159 50.000 3.30 0.00 36.07 4.06
1791 1857 1.659098 GTCGGCATCAAACTAGAACCG 59.341 52.381 0.00 0.00 40.57 4.44
1796 1862 2.159653 GCAACTGTCGGCATCAAACTAG 60.160 50.000 0.00 0.00 0.00 2.57
1832 1928 6.509418 AAAAACAGTGTTCTGCTTGTTCTA 57.491 33.333 9.40 0.00 44.77 2.10
1833 1929 5.391312 AAAAACAGTGTTCTGCTTGTTCT 57.609 34.783 9.40 0.00 44.77 3.01
1965 2061 4.201970 TGGTCGTTTGAGCTTTGTTAAAGG 60.202 41.667 3.76 0.00 43.09 3.11
1971 2067 1.880027 GGATGGTCGTTTGAGCTTTGT 59.120 47.619 0.00 0.00 43.09 2.83
1972 2068 2.154462 AGGATGGTCGTTTGAGCTTTG 58.846 47.619 0.00 0.00 43.09 2.77
1973 2069 2.427506 GAGGATGGTCGTTTGAGCTTT 58.572 47.619 0.00 0.00 43.09 3.51
1983 2079 2.106857 ACTCTAGGTAGGAGGATGGTCG 59.893 54.545 0.00 0.00 35.34 4.79
1985 2081 3.132056 TCACTCTAGGTAGGAGGATGGT 58.868 50.000 0.00 0.00 35.34 3.55
2021 2121 1.493446 CTACAACCCCCTCCCCATTAC 59.507 57.143 0.00 0.00 0.00 1.89
2028 2131 1.422402 TCAAACACTACAACCCCCTCC 59.578 52.381 0.00 0.00 0.00 4.30
2076 2182 1.740296 GTGACACGTTAGGCGGCAT 60.740 57.895 13.08 0.00 46.52 4.40
2127 2233 8.119891 AGGTGGATATTTTAAGAGGCCTTTTAA 58.880 33.333 21.43 21.43 33.94 1.52
2252 2370 7.005296 AGTCATTAGCTAGCTACTTTAGGCTA 58.995 38.462 24.09 6.70 39.65 3.93
2339 2457 1.728074 TGTACACGCGCGAGTTGAG 60.728 57.895 39.36 19.49 0.00 3.02
2341 2459 2.464189 GTGTACACGCGCGAGTTG 59.536 61.111 39.36 26.67 0.00 3.16
2551 2669 4.090057 GCCTTCTGCCACGCGAAC 62.090 66.667 15.93 1.18 0.00 3.95
2686 2804 2.518349 AACACCACCAAGGCCACG 60.518 61.111 5.01 0.00 43.14 4.94
2701 2819 2.511600 CCGGTGCCGATGGAGAAC 60.512 66.667 12.71 0.00 42.83 3.01
3205 3323 1.204312 GCTGTTGCCGAACTCGAAC 59.796 57.895 0.00 0.00 43.02 3.95
3250 3368 3.698382 GCGGAGTGAAGATCGCTG 58.302 61.111 0.00 0.00 44.10 5.18
3254 3372 2.386661 TTGGAAGCGGAGTGAAGATC 57.613 50.000 0.00 0.00 0.00 2.75
3255 3373 2.237143 TGATTGGAAGCGGAGTGAAGAT 59.763 45.455 0.00 0.00 0.00 2.40
3256 3374 1.623311 TGATTGGAAGCGGAGTGAAGA 59.377 47.619 0.00 0.00 0.00 2.87
3279 3397 3.609256 TGTCAGCTAGAGGAGGATGAT 57.391 47.619 0.00 0.00 30.64 2.45
3288 3406 6.625362 TCACAACTAATCTTGTCAGCTAGAG 58.375 40.000 0.00 0.00 31.73 2.43
3289 3407 6.590234 TCACAACTAATCTTGTCAGCTAGA 57.410 37.500 0.00 0.00 31.73 2.43
3290 3408 7.386299 AGTTTCACAACTAATCTTGTCAGCTAG 59.614 37.037 0.00 0.00 41.81 3.42
3291 3409 7.171508 CAGTTTCACAACTAATCTTGTCAGCTA 59.828 37.037 0.00 0.00 41.69 3.32
3292 3410 6.017605 CAGTTTCACAACTAATCTTGTCAGCT 60.018 38.462 0.00 0.00 41.69 4.24
3302 3420 4.826733 TGCACCATCAGTTTCACAACTAAT 59.173 37.500 0.00 0.00 41.69 1.73
3313 3431 1.086067 CGCGATCTGCACCATCAGTT 61.086 55.000 0.00 0.00 46.97 3.16
3317 3435 3.643978 GCCGCGATCTGCACCATC 61.644 66.667 8.23 0.00 46.97 3.51
3434 3576 2.743718 CCCGTCAGGAAGCACACT 59.256 61.111 0.00 0.00 41.02 3.55
3497 3639 1.083401 GTGCTTGTGCGTCACGAAG 60.083 57.895 0.00 0.00 43.34 3.79
3677 3819 0.759436 GCCCGTCCTCCTCCATCTTA 60.759 60.000 0.00 0.00 0.00 2.10
3684 3826 3.462678 GTCCTGCCCGTCCTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
3906 4083 1.490693 CGCTGCATGGGTCATACGAC 61.491 60.000 0.00 0.00 41.80 4.34
3927 4104 1.526584 CGACAGCGTGAGTACTACGAC 60.527 57.143 21.31 14.78 43.82 4.34
3950 4127 2.224475 CCATGCTCCTCAGTCCATAAGG 60.224 54.545 0.00 0.00 0.00 2.69
3956 4133 0.393537 CAACCCATGCTCCTCAGTCC 60.394 60.000 0.00 0.00 0.00 3.85
3961 4138 1.747355 CAACATCAACCCATGCTCCTC 59.253 52.381 0.00 0.00 0.00 3.71
3962 4139 1.076024 ACAACATCAACCCATGCTCCT 59.924 47.619 0.00 0.00 0.00 3.69
3969 4146 1.073763 CCAGAGGACAACATCAACCCA 59.926 52.381 0.00 0.00 0.00 4.51
3971 4148 2.154462 CACCAGAGGACAACATCAACC 58.846 52.381 0.00 0.00 0.00 3.77
3981 4158 7.407393 AGTACTATTTTAGACACCAGAGGAC 57.593 40.000 0.00 0.00 0.00 3.85
3988 4167 5.364735 TGGCCCTAGTACTATTTTAGACACC 59.635 44.000 2.33 0.00 0.00 4.16
4050 4238 0.675083 CAGCTGAAAACACATGCCCA 59.325 50.000 8.42 0.00 0.00 5.36
4051 4239 0.675633 ACAGCTGAAAACACATGCCC 59.324 50.000 23.35 0.00 0.00 5.36
4197 4387 1.814394 GCTTGCCATCTGATGAACACA 59.186 47.619 18.92 8.53 0.00 3.72
4199 4389 1.089112 CGCTTGCCATCTGATGAACA 58.911 50.000 18.92 13.16 0.00 3.18
4200 4390 0.379669 CCGCTTGCCATCTGATGAAC 59.620 55.000 18.92 10.81 0.00 3.18
4217 4409 2.438434 GATCAGCCAACACCCCCG 60.438 66.667 0.00 0.00 0.00 5.73
4220 4415 0.251341 ACAAGGATCAGCCAACACCC 60.251 55.000 0.00 0.00 40.02 4.61
4235 4430 6.025896 CAGTAAGCAATAGCATCACAACAAG 58.974 40.000 0.00 0.00 45.49 3.16
4259 4454 5.007528 GTCCAGAATTTCAGATGCTCTAAGC 59.992 44.000 0.00 0.00 42.82 3.09
4260 4455 6.111382 TGTCCAGAATTTCAGATGCTCTAAG 58.889 40.000 0.00 0.00 0.00 2.18
4261 4456 6.053632 TGTCCAGAATTTCAGATGCTCTAA 57.946 37.500 0.00 0.00 0.00 2.10
4262 4457 5.423290 TCTGTCCAGAATTTCAGATGCTCTA 59.577 40.000 0.00 0.00 33.91 2.43
4263 4458 4.224594 TCTGTCCAGAATTTCAGATGCTCT 59.775 41.667 0.00 0.00 33.91 4.09
4264 4459 4.511527 TCTGTCCAGAATTTCAGATGCTC 58.488 43.478 0.00 0.00 33.91 4.26
4265 4460 4.564782 TCTGTCCAGAATTTCAGATGCT 57.435 40.909 0.00 0.00 33.91 3.79
4281 4476 2.989840 CAGTTCCTCGTCATGTTCTGTC 59.010 50.000 0.00 0.00 0.00 3.51
4284 4479 2.028930 GTCCAGTTCCTCGTCATGTTCT 60.029 50.000 0.00 0.00 0.00 3.01
4293 4488 0.754217 TATCCCGGTCCAGTTCCTCG 60.754 60.000 0.00 0.00 0.00 4.63
4315 4510 0.981183 ATGTTCTACGCCCCTCAACA 59.019 50.000 0.00 0.00 0.00 3.33
4331 4532 4.238514 GCTCTGTTCGTAACTTCAGATGT 58.761 43.478 0.00 0.00 36.55 3.06
4344 4545 3.696898 GACTAGTACCATGCTCTGTTCG 58.303 50.000 0.00 0.00 0.00 3.95
4364 4565 1.212751 CATCAGTCGTGGCTGTCGA 59.787 57.895 0.86 0.00 37.70 4.20
4366 4567 0.244994 ACTCATCAGTCGTGGCTGTC 59.755 55.000 0.86 0.00 37.70 3.51
4367 4568 0.037882 CACTCATCAGTCGTGGCTGT 60.038 55.000 0.86 0.00 37.70 4.40
4368 4569 0.738762 CCACTCATCAGTCGTGGCTG 60.739 60.000 0.00 0.00 41.39 4.85
4369 4570 1.593787 CCACTCATCAGTCGTGGCT 59.406 57.895 0.00 0.00 41.39 4.75
4370 4571 4.192000 CCACTCATCAGTCGTGGC 57.808 61.111 0.00 0.00 41.39 5.01
4372 4573 1.730501 AATGCCACTCATCAGTCGTG 58.269 50.000 0.00 0.00 33.40 4.35
4373 4574 3.262420 GTTAATGCCACTCATCAGTCGT 58.738 45.455 0.00 0.00 33.40 4.34
4374 4575 2.282555 CGTTAATGCCACTCATCAGTCG 59.717 50.000 0.00 0.00 33.40 4.18
4380 4586 3.313526 GCAGAATCGTTAATGCCACTCAT 59.686 43.478 0.00 0.00 36.87 2.90
4403 4609 2.747396 TATTGCGTAAACCGACCTGT 57.253 45.000 0.00 0.00 39.56 4.00
4440 4649 1.066002 TGTACTATTCACCTACCGCGC 59.934 52.381 0.00 0.00 0.00 6.86
4441 4650 3.637998 ATGTACTATTCACCTACCGCG 57.362 47.619 0.00 0.00 0.00 6.46
4453 4662 7.443575 AGACGTAACATTCGGAGTATGTACTAT 59.556 37.037 0.00 0.00 35.26 2.12
4454 4663 6.763135 AGACGTAACATTCGGAGTATGTACTA 59.237 38.462 0.00 0.00 35.26 1.82
4455 4664 5.587844 AGACGTAACATTCGGAGTATGTACT 59.412 40.000 0.00 0.00 35.26 2.73
4456 4665 5.814783 AGACGTAACATTCGGAGTATGTAC 58.185 41.667 0.00 0.00 35.26 2.90
4457 4666 6.986231 TCTAGACGTAACATTCGGAGTATGTA 59.014 38.462 0.00 0.00 35.26 2.29
4458 4667 4.978083 AGACGTAACATTCGGAGTATGT 57.022 40.909 0.00 0.00 37.82 2.29
4459 4668 6.296365 TCTAGACGTAACATTCGGAGTATG 57.704 41.667 0.00 0.00 0.00 2.39
4460 4669 7.507733 AATCTAGACGTAACATTCGGAGTAT 57.492 36.000 0.00 0.00 0.00 2.12
4461 4670 6.932356 AATCTAGACGTAACATTCGGAGTA 57.068 37.500 0.00 0.00 0.00 2.59
4462 4671 5.831702 AATCTAGACGTAACATTCGGAGT 57.168 39.130 0.00 0.00 0.00 3.85
4463 4672 7.521509 AAAAATCTAGACGTAACATTCGGAG 57.478 36.000 0.00 0.00 0.00 4.63
4495 4704 5.312120 TCGTAAGCAAACAGAACCAAAAA 57.688 34.783 0.00 0.00 37.18 1.94
4496 4705 4.201970 CCTCGTAAGCAAACAGAACCAAAA 60.202 41.667 0.00 0.00 37.18 2.44
4497 4706 3.314080 CCTCGTAAGCAAACAGAACCAAA 59.686 43.478 0.00 0.00 37.18 3.28
4498 4707 2.875933 CCTCGTAAGCAAACAGAACCAA 59.124 45.455 0.00 0.00 37.18 3.67
4499 4708 2.489971 CCTCGTAAGCAAACAGAACCA 58.510 47.619 0.00 0.00 37.18 3.67
4500 4709 1.804748 CCCTCGTAAGCAAACAGAACC 59.195 52.381 0.00 0.00 37.18 3.62
4501 4710 1.197036 GCCCTCGTAAGCAAACAGAAC 59.803 52.381 0.00 0.00 37.18 3.01
4502 4711 1.202710 TGCCCTCGTAAGCAAACAGAA 60.203 47.619 0.00 0.00 35.69 3.02
4503 4712 0.394938 TGCCCTCGTAAGCAAACAGA 59.605 50.000 0.00 0.00 35.69 3.41
4504 4713 0.798776 CTGCCCTCGTAAGCAAACAG 59.201 55.000 0.00 0.00 38.82 3.16
4505 4714 0.107831 ACTGCCCTCGTAAGCAAACA 59.892 50.000 0.00 0.00 38.82 2.83
4506 4715 0.517316 CACTGCCCTCGTAAGCAAAC 59.483 55.000 0.00 0.00 38.82 2.93
4507 4716 0.394938 TCACTGCCCTCGTAAGCAAA 59.605 50.000 0.00 0.00 38.82 3.68
4508 4717 0.037326 CTCACTGCCCTCGTAAGCAA 60.037 55.000 0.00 0.00 38.82 3.91
4509 4718 0.898326 TCTCACTGCCCTCGTAAGCA 60.898 55.000 0.00 0.00 37.46 3.91
4510 4719 0.461961 ATCTCACTGCCCTCGTAAGC 59.538 55.000 0.00 0.00 37.18 3.09
4511 4720 1.751351 TCATCTCACTGCCCTCGTAAG 59.249 52.381 0.00 0.00 0.00 2.34
4512 4721 1.847328 TCATCTCACTGCCCTCGTAA 58.153 50.000 0.00 0.00 0.00 3.18
4513 4722 1.957177 GATCATCTCACTGCCCTCGTA 59.043 52.381 0.00 0.00 0.00 3.43
4514 4723 0.749649 GATCATCTCACTGCCCTCGT 59.250 55.000 0.00 0.00 0.00 4.18
4515 4724 0.749049 TGATCATCTCACTGCCCTCG 59.251 55.000 0.00 0.00 0.00 4.63
4516 4725 2.550423 CCATGATCATCTCACTGCCCTC 60.550 54.545 4.86 0.00 36.48 4.30
4517 4726 1.420514 CCATGATCATCTCACTGCCCT 59.579 52.381 4.86 0.00 36.48 5.19
4518 4727 1.544982 CCCATGATCATCTCACTGCCC 60.545 57.143 4.86 0.00 36.48 5.36
4519 4728 1.419012 TCCCATGATCATCTCACTGCC 59.581 52.381 4.86 0.00 36.48 4.85
4520 4729 2.924757 TCCCATGATCATCTCACTGC 57.075 50.000 4.86 0.00 36.48 4.40
4521 4730 5.032327 TCTTTCCCATGATCATCTCACTG 57.968 43.478 4.86 0.00 36.48 3.66
4522 4731 5.427806 TCTTCTTTCCCATGATCATCTCACT 59.572 40.000 4.86 0.00 36.48 3.41
4523 4732 5.678583 TCTTCTTTCCCATGATCATCTCAC 58.321 41.667 4.86 0.00 36.48 3.51
4524 4733 5.963214 TCTTCTTTCCCATGATCATCTCA 57.037 39.130 4.86 0.00 38.53 3.27
4525 4734 7.636150 TTTTCTTCTTTCCCATGATCATCTC 57.364 36.000 4.86 0.00 0.00 2.75
4550 4759 8.463930 TCTGATGAGTTAACATTCCTGTTTTT 57.536 30.769 8.61 0.00 43.05 1.94
4551 4760 7.308830 GCTCTGATGAGTTAACATTCCTGTTTT 60.309 37.037 8.61 0.00 41.21 2.43
4552 4761 6.150140 GCTCTGATGAGTTAACATTCCTGTTT 59.850 38.462 8.61 0.00 41.21 2.83
4553 4762 5.645497 GCTCTGATGAGTTAACATTCCTGTT 59.355 40.000 8.61 0.00 43.61 3.16
4554 4763 5.181748 GCTCTGATGAGTTAACATTCCTGT 58.818 41.667 8.61 0.00 42.13 4.00
4555 4764 5.181009 TGCTCTGATGAGTTAACATTCCTG 58.819 41.667 8.61 0.00 42.13 3.86
4556 4765 5.426689 TGCTCTGATGAGTTAACATTCCT 57.573 39.130 8.61 0.00 42.13 3.36
4557 4766 5.505324 GCATGCTCTGATGAGTTAACATTCC 60.505 44.000 11.37 0.00 42.13 3.01
4558 4767 5.296283 AGCATGCTCTGATGAGTTAACATTC 59.704 40.000 16.30 2.21 42.13 2.67
4559 4768 5.066117 CAGCATGCTCTGATGAGTTAACATT 59.934 40.000 19.68 0.00 44.17 2.71
4560 4769 4.575236 CAGCATGCTCTGATGAGTTAACAT 59.425 41.667 19.68 0.00 44.17 2.71
4561 4770 3.937079 CAGCATGCTCTGATGAGTTAACA 59.063 43.478 19.68 0.00 44.17 2.41
4562 4771 4.186926 TCAGCATGCTCTGATGAGTTAAC 58.813 43.478 19.68 0.00 45.02 2.01
4563 4772 4.476628 TCAGCATGCTCTGATGAGTTAA 57.523 40.909 19.68 0.00 45.02 2.01
4569 4778 1.167155 GCCCTCAGCATGCTCTGATG 61.167 60.000 19.68 10.99 41.73 3.07
4570 4779 1.148723 GCCCTCAGCATGCTCTGAT 59.851 57.895 19.68 0.00 41.73 2.90
4571 4780 2.588439 GCCCTCAGCATGCTCTGA 59.412 61.111 19.68 13.49 42.97 3.27
4580 4789 0.950116 GCATTGTAGATGCCCTCAGC 59.050 55.000 0.00 0.00 44.14 4.26
4581 4790 2.336945 TGCATTGTAGATGCCCTCAG 57.663 50.000 8.36 0.00 43.94 3.35
4582 4791 2.804986 TTGCATTGTAGATGCCCTCA 57.195 45.000 8.36 0.00 43.94 3.86
4583 4792 2.360165 CCTTTGCATTGTAGATGCCCTC 59.640 50.000 8.36 0.00 43.94 4.30
4584 4793 2.291800 ACCTTTGCATTGTAGATGCCCT 60.292 45.455 8.36 0.00 43.94 5.19
4585 4794 2.102578 ACCTTTGCATTGTAGATGCCC 58.897 47.619 8.36 0.00 43.94 5.36
4586 4795 3.155093 CACCTTTGCATTGTAGATGCC 57.845 47.619 8.36 0.00 43.94 4.40
4599 4808 0.171007 CGCCCATACAAGCACCTTTG 59.829 55.000 0.00 0.00 0.00 2.77
4600 4809 1.595093 GCGCCCATACAAGCACCTTT 61.595 55.000 0.00 0.00 0.00 3.11
4601 4810 2.046285 GCGCCCATACAAGCACCTT 61.046 57.895 0.00 0.00 0.00 3.50
4602 4811 2.438434 GCGCCCATACAAGCACCT 60.438 61.111 0.00 0.00 0.00 4.00
4603 4812 0.746563 TAAGCGCCCATACAAGCACC 60.747 55.000 2.29 0.00 0.00 5.01
4604 4813 0.657840 CTAAGCGCCCATACAAGCAC 59.342 55.000 2.29 0.00 0.00 4.40
4605 4814 0.539518 TCTAAGCGCCCATACAAGCA 59.460 50.000 2.29 0.00 0.00 3.91
4606 4815 0.938008 GTCTAAGCGCCCATACAAGC 59.062 55.000 2.29 0.00 0.00 4.01
4607 4816 2.309528 TGTCTAAGCGCCCATACAAG 57.690 50.000 2.29 0.00 0.00 3.16
4608 4817 2.772077 TTGTCTAAGCGCCCATACAA 57.228 45.000 2.29 7.88 0.00 2.41
4609 4818 3.639561 TCTATTGTCTAAGCGCCCATACA 59.360 43.478 2.29 0.69 0.00 2.29
4610 4819 4.252971 TCTATTGTCTAAGCGCCCATAC 57.747 45.455 2.29 0.00 0.00 2.39
4611 4820 4.948341 TTCTATTGTCTAAGCGCCCATA 57.052 40.909 2.29 0.00 0.00 2.74
4612 4821 3.838244 TTCTATTGTCTAAGCGCCCAT 57.162 42.857 2.29 0.00 0.00 4.00
4613 4822 3.196901 TCTTTCTATTGTCTAAGCGCCCA 59.803 43.478 2.29 0.00 0.00 5.36
4614 4823 3.793559 TCTTTCTATTGTCTAAGCGCCC 58.206 45.455 2.29 0.00 0.00 6.13
4615 4824 5.993106 ATTCTTTCTATTGTCTAAGCGCC 57.007 39.130 2.29 0.00 0.00 6.53
4616 4825 7.579450 CGTTAATTCTTTCTATTGTCTAAGCGC 59.421 37.037 0.00 0.00 0.00 5.92
4617 4826 8.056571 CCGTTAATTCTTTCTATTGTCTAAGCG 58.943 37.037 0.00 0.00 0.00 4.68
4618 4827 7.851472 GCCGTTAATTCTTTCTATTGTCTAAGC 59.149 37.037 0.00 0.00 0.00 3.09
4619 4828 8.056571 CGCCGTTAATTCTTTCTATTGTCTAAG 58.943 37.037 0.00 0.00 0.00 2.18
4620 4829 7.760794 TCGCCGTTAATTCTTTCTATTGTCTAA 59.239 33.333 0.00 0.00 0.00 2.10
4621 4830 7.259882 TCGCCGTTAATTCTTTCTATTGTCTA 58.740 34.615 0.00 0.00 0.00 2.59
4622 4831 6.103997 TCGCCGTTAATTCTTTCTATTGTCT 58.896 36.000 0.00 0.00 0.00 3.41
4623 4832 6.035758 ACTCGCCGTTAATTCTTTCTATTGTC 59.964 38.462 0.00 0.00 0.00 3.18
4624 4833 5.873164 ACTCGCCGTTAATTCTTTCTATTGT 59.127 36.000 0.00 0.00 0.00 2.71
4625 4834 6.255887 AGACTCGCCGTTAATTCTTTCTATTG 59.744 38.462 0.00 0.00 0.00 1.90
4626 4835 6.338937 AGACTCGCCGTTAATTCTTTCTATT 58.661 36.000 0.00 0.00 0.00 1.73
4627 4836 5.903810 AGACTCGCCGTTAATTCTTTCTAT 58.096 37.500 0.00 0.00 0.00 1.98
4628 4837 5.320549 AGACTCGCCGTTAATTCTTTCTA 57.679 39.130 0.00 0.00 0.00 2.10
4629 4838 4.189639 AGACTCGCCGTTAATTCTTTCT 57.810 40.909 0.00 0.00 0.00 2.52
4630 4839 4.267214 GGTAGACTCGCCGTTAATTCTTTC 59.733 45.833 0.00 0.00 0.00 2.62
4631 4840 4.081807 AGGTAGACTCGCCGTTAATTCTTT 60.082 41.667 0.00 0.00 0.00 2.52
4632 4841 3.446516 AGGTAGACTCGCCGTTAATTCTT 59.553 43.478 0.00 0.00 0.00 2.52
4633 4842 3.022406 AGGTAGACTCGCCGTTAATTCT 58.978 45.455 0.00 0.00 0.00 2.40
4634 4843 3.433513 AGGTAGACTCGCCGTTAATTC 57.566 47.619 0.00 0.00 0.00 2.17
4635 4844 3.243334 GCTAGGTAGACTCGCCGTTAATT 60.243 47.826 0.00 0.00 32.07 1.40
4636 4845 2.292845 GCTAGGTAGACTCGCCGTTAAT 59.707 50.000 0.00 0.00 32.07 1.40
4637 4846 1.672881 GCTAGGTAGACTCGCCGTTAA 59.327 52.381 0.00 0.00 32.07 2.01
4638 4847 1.303309 GCTAGGTAGACTCGCCGTTA 58.697 55.000 0.00 0.00 32.07 3.18
4639 4848 1.712977 CGCTAGGTAGACTCGCCGTT 61.713 60.000 0.00 0.00 34.59 4.44
4640 4849 2.178890 CGCTAGGTAGACTCGCCGT 61.179 63.158 0.00 0.00 34.59 5.68
4641 4850 2.632541 CGCTAGGTAGACTCGCCG 59.367 66.667 0.00 0.00 34.59 6.46
4642 4851 3.032339 CCGCTAGGTAGACTCGCC 58.968 66.667 0.00 0.00 34.59 5.54
4643 4852 2.332159 GCCGCTAGGTAGACTCGC 59.668 66.667 0.00 0.00 40.50 5.03
4644 4853 2.894565 CGGCCGCTAGGTAGACTCG 61.895 68.421 14.67 0.00 40.50 4.18
4645 4854 2.553727 CCGGCCGCTAGGTAGACTC 61.554 68.421 22.85 0.00 40.50 3.36
4646 4855 2.518825 CCGGCCGCTAGGTAGACT 60.519 66.667 22.85 0.00 40.50 3.24
4647 4856 4.281947 GCCGGCCGCTAGGTAGAC 62.282 72.222 22.85 0.00 40.50 2.59
4664 4873 4.827087 ACGATGCCCAGCGAGCAG 62.827 66.667 13.16 0.00 44.90 4.24
4666 4875 4.819761 TCACGATGCCCAGCGAGC 62.820 66.667 13.16 0.00 43.75 5.03
4667 4876 2.584418 CTCACGATGCCCAGCGAG 60.584 66.667 13.16 4.95 43.75 5.03
4668 4877 4.819761 GCTCACGATGCCCAGCGA 62.820 66.667 13.16 0.00 43.75 4.93
4682 4891 3.750373 TATTTCAGGCCGGCCGCTC 62.750 63.158 38.88 16.62 41.95 5.03
4683 4892 3.757248 CTATTTCAGGCCGGCCGCT 62.757 63.158 38.88 21.72 41.95 5.52
4684 4893 3.279875 CTATTTCAGGCCGGCCGC 61.280 66.667 38.88 17.88 41.95 6.53
4685 4894 0.535102 ATTCTATTTCAGGCCGGCCG 60.535 55.000 38.88 31.40 41.95 6.13
4686 4895 1.692411 AATTCTATTTCAGGCCGGCC 58.308 50.000 39.29 39.29 0.00 6.13
4687 4896 3.119137 ACAAAATTCTATTTCAGGCCGGC 60.119 43.478 21.18 21.18 0.00 6.13
4688 4897 4.718940 ACAAAATTCTATTTCAGGCCGG 57.281 40.909 0.00 0.00 0.00 6.13
4689 4898 5.469479 ACAACAAAATTCTATTTCAGGCCG 58.531 37.500 0.00 0.00 0.00 6.13
4690 4899 5.869344 GGACAACAAAATTCTATTTCAGGCC 59.131 40.000 0.00 0.00 0.00 5.19
4691 4900 5.869344 GGGACAACAAAATTCTATTTCAGGC 59.131 40.000 0.00 0.00 0.00 4.85
4692 4901 7.232118 AGGGACAACAAAATTCTATTTCAGG 57.768 36.000 0.00 0.00 0.00 3.86
4704 4913 9.762381 ACCATTTATAGATTAGGGACAACAAAA 57.238 29.630 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.