Multiple sequence alignment - TraesCS2B01G157700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G157700 chr2B 100.000 4747 0 0 1 4747 131578009 131573263 0.000000e+00 8767.0
1 TraesCS2B01G157700 chr2B 97.059 34 1 0 765 798 89487108 89487075 1.850000e-04 58.4
2 TraesCS2B01G157700 chr2A 97.127 3724 91 5 1039 4747 80595796 80592074 0.000000e+00 6270.0
3 TraesCS2B01G157700 chr2A 83.531 844 76 31 1 795 80601763 80600934 0.000000e+00 730.0
4 TraesCS2B01G157700 chr2A 89.243 251 12 6 803 1046 80598846 80598604 2.780000e-77 300.0
5 TraesCS2B01G157700 chr2A 94.737 38 2 0 762 799 302441010 302441047 5.130000e-05 60.2
6 TraesCS2B01G157700 chr2A 96.774 31 1 0 768 798 23940423 23940393 9.000000e-03 52.8
7 TraesCS2B01G157700 chr2D 95.623 3907 142 12 857 4747 79990425 79986532 0.000000e+00 6240.0
8 TraesCS2B01G157700 chr2D 84.534 847 64 37 1 795 79991732 79990901 0.000000e+00 776.0
9 TraesCS2B01G157700 chr4D 95.500 600 23 2 1039 1635 30752060 30751462 0.000000e+00 955.0
10 TraesCS2B01G157700 chr5D 92.763 608 32 6 1039 1635 425666139 425665533 0.000000e+00 869.0
11 TraesCS2B01G157700 chr1A 74.529 1327 296 36 1470 2776 432637535 432636231 1.500000e-149 540.0
12 TraesCS2B01G157700 chr7B 94.286 35 2 0 765 799 678883467 678883501 2.000000e-03 54.7
13 TraesCS2B01G157700 chr6B 96.875 32 1 0 767 798 440779214 440779183 2.000000e-03 54.7
14 TraesCS2B01G157700 chr6B 100.000 28 0 0 771 798 7944323 7944296 9.000000e-03 52.8
15 TraesCS2B01G157700 chr1B 96.875 32 1 0 767 798 5702236 5702205 2.000000e-03 54.7
16 TraesCS2B01G157700 chrUn 100.000 28 0 0 768 795 224653305 224653332 9.000000e-03 52.8
17 TraesCS2B01G157700 chr3B 96.774 31 1 0 768 798 642815936 642815906 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G157700 chr2B 131573263 131578009 4746 True 8767.000000 8767 100.0000 1 4747 1 chr2B.!!$R2 4746
1 TraesCS2B01G157700 chr2A 80592074 80601763 9689 True 2433.333333 6270 89.9670 1 4747 3 chr2A.!!$R2 4746
2 TraesCS2B01G157700 chr2D 79986532 79991732 5200 True 3508.000000 6240 90.0785 1 4747 2 chr2D.!!$R1 4746
3 TraesCS2B01G157700 chr4D 30751462 30752060 598 True 955.000000 955 95.5000 1039 1635 1 chr4D.!!$R1 596
4 TraesCS2B01G157700 chr5D 425665533 425666139 606 True 869.000000 869 92.7630 1039 1635 1 chr5D.!!$R1 596
5 TraesCS2B01G157700 chr1A 432636231 432637535 1304 True 540.000000 540 74.5290 1470 2776 1 chr1A.!!$R1 1306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 583 0.041833 TCCCTCTCTTCCACCCTCAG 59.958 60.000 0.00 0.0 0.0 3.35 F
2248 7607 0.107066 TGCATGCTCACCCATTCGAT 60.107 50.000 20.33 0.0 0.0 3.59 F
2514 7873 1.284785 TGGGGATAAGCAGGAGTTTGG 59.715 52.381 0.00 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2530 7889 0.254178 CCACCCCAAGATGGACAGAG 59.746 60.0 0.0 0.0 40.96 3.35 R
3320 8688 2.883122 ACGAGGTAGGAGAAGTCACT 57.117 50.0 0.0 0.0 0.00 3.41 R
4272 9645 0.908198 GGAAGAGGCTGATGGACACT 59.092 55.0 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 9.090692 CCTTTAATCAAAGCATTCCAATGTAAG 57.909 33.333 1.37 0.00 39.95 2.34
203 233 9.635520 TCTCTAGGATTTTTCTACTACGTTTTG 57.364 33.333 0.00 0.00 0.00 2.44
214 244 8.428186 TTCTACTACGTTTTGTTGTGAATTCT 57.572 30.769 7.05 0.00 37.14 2.40
218 248 5.177725 ACGTTTTGTTGTGAATTCTACCC 57.822 39.130 7.05 0.00 0.00 3.69
244 274 7.212274 CCACTCAAACCTCTTGAAAAATCATT 58.788 34.615 0.00 0.00 0.00 2.57
245 275 7.712205 CCACTCAAACCTCTTGAAAAATCATTT 59.288 33.333 0.00 0.00 0.00 2.32
349 392 8.480643 ACGGTCTAAGAATCATAAAAGTCAAG 57.519 34.615 0.00 0.00 0.00 3.02
465 509 6.207025 AGACTAAGAGTACGTGACAATGAGTT 59.793 38.462 0.00 0.00 0.00 3.01
538 582 0.719015 ATCCCTCTCTTCCACCCTCA 59.281 55.000 0.00 0.00 0.00 3.86
539 583 0.041833 TCCCTCTCTTCCACCCTCAG 59.958 60.000 0.00 0.00 0.00 3.35
540 584 0.980231 CCCTCTCTTCCACCCTCAGG 60.980 65.000 0.00 0.00 40.04 3.86
541 585 1.621672 CCTCTCTTCCACCCTCAGGC 61.622 65.000 0.00 0.00 36.11 4.85
542 586 1.613630 TCTCTTCCACCCTCAGGCC 60.614 63.158 0.00 0.00 36.11 5.19
543 587 1.614824 CTCTTCCACCCTCAGGCCT 60.615 63.158 0.00 0.00 36.11 5.19
544 588 1.613630 TCTTCCACCCTCAGGCCTC 60.614 63.158 0.00 0.00 36.11 4.70
576 620 1.271840 GGTGCTGTGGGGAGGATGTA 61.272 60.000 0.00 0.00 0.00 2.29
585 629 0.179054 GGGAGGATGTAGCGGTTTCC 60.179 60.000 0.00 0.00 0.00 3.13
708 753 3.127533 GGCGCTTGCTTCGGTCAT 61.128 61.111 7.64 0.00 39.13 3.06
731 776 4.883585 TCAAAGAGCATGAGAGTTTGTGTT 59.116 37.500 0.00 0.00 31.44 3.32
734 779 1.532868 AGCATGAGAGTTTGTGTTCGC 59.467 47.619 0.00 0.00 0.00 4.70
737 782 0.529773 TGAGAGTTTGTGTTCGCGCT 60.530 50.000 5.56 0.00 0.00 5.92
752 805 2.549198 CGCTGGCACATGCATAGGG 61.549 63.158 0.00 7.92 44.36 3.53
777 830 4.095036 GCTCACTTGCAATTAACTACTCCC 59.905 45.833 0.00 0.00 0.00 4.30
778 831 5.491982 CTCACTTGCAATTAACTACTCCCT 58.508 41.667 0.00 0.00 0.00 4.20
779 832 5.488341 TCACTTGCAATTAACTACTCCCTC 58.512 41.667 0.00 0.00 0.00 4.30
780 833 5.248477 TCACTTGCAATTAACTACTCCCTCT 59.752 40.000 0.00 0.00 0.00 3.69
795 848 4.409247 ACTCCCTCTGTCCCATAATGTAAC 59.591 45.833 0.00 0.00 0.00 2.50
797 850 4.163458 TCCCTCTGTCCCATAATGTAACAC 59.837 45.833 0.00 0.00 0.00 3.32
798 851 4.080582 CCCTCTGTCCCATAATGTAACACA 60.081 45.833 0.00 0.00 0.00 3.72
799 852 4.876107 CCTCTGTCCCATAATGTAACACAC 59.124 45.833 0.00 0.00 0.00 3.82
813 2946 5.298347 TGTAACACACACATTATGGAACGA 58.702 37.500 0.00 0.00 30.04 3.85
816 2949 3.188460 ACACACACATTATGGAACGAAGC 59.812 43.478 0.00 0.00 0.00 3.86
841 2974 8.604035 GCGAGTAGTCAATCATTTTTATCTCAA 58.396 33.333 0.00 0.00 0.00 3.02
886 3416 8.882415 TTCTAGAAACAAATCAACGTCTTACT 57.118 30.769 1.68 0.00 0.00 2.24
887 3417 8.294341 TCTAGAAACAAATCAACGTCTTACTG 57.706 34.615 0.00 0.00 0.00 2.74
888 3418 6.920569 AGAAACAAATCAACGTCTTACTGT 57.079 33.333 0.00 0.00 0.00 3.55
889 3419 9.188588 CTAGAAACAAATCAACGTCTTACTGTA 57.811 33.333 0.00 0.00 0.00 2.74
890 3420 7.848491 AGAAACAAATCAACGTCTTACTGTAC 58.152 34.615 0.00 0.00 0.00 2.90
894 3424 7.627340 ACAAATCAACGTCTTACTGTACTTTG 58.373 34.615 0.00 0.00 0.00 2.77
903 3433 1.657804 ACTGTACTTTGGGAGAGGGG 58.342 55.000 0.00 0.00 0.00 4.79
951 3481 3.434309 TCACAGATCTCACACATCCAGA 58.566 45.455 0.00 0.00 0.00 3.86
952 3482 4.028825 TCACAGATCTCACACATCCAGAT 58.971 43.478 0.00 0.00 0.00 2.90
962 3496 0.254178 ACATCCAGATGCCACAGGTC 59.746 55.000 7.56 0.00 42.39 3.85
1117 6466 4.704833 CCACTGCCGACCCACCAG 62.705 72.222 0.00 0.00 0.00 4.00
1336 6695 2.507854 CCGCATCCCGTACCCATCT 61.508 63.158 0.00 0.00 34.38 2.90
1714 7073 1.374758 CCTCACCAGGCACTTCGAC 60.375 63.158 0.00 0.00 34.60 4.20
1732 7091 2.885861 GTCGATCTGGACCAGCGT 59.114 61.111 17.33 7.77 0.00 5.07
1969 7328 0.170561 CCGTGTTCTACCTCACTCGG 59.829 60.000 0.00 0.00 41.95 4.63
2005 7364 2.416893 GGAGGCTTTCGATGTTCAGTTC 59.583 50.000 0.00 0.00 0.00 3.01
2158 7517 2.439880 TGTTATCCGTGGATATTGGGCA 59.560 45.455 9.34 2.61 37.02 5.36
2248 7607 0.107066 TGCATGCTCACCCATTCGAT 60.107 50.000 20.33 0.00 0.00 3.59
2251 7610 2.501261 CATGCTCACCCATTCGATGAT 58.499 47.619 0.00 0.00 0.00 2.45
2514 7873 1.284785 TGGGGATAAGCAGGAGTTTGG 59.715 52.381 0.00 0.00 0.00 3.28
2734 8093 3.312973 CAGAGCAAGGCAATTCAGATCTC 59.687 47.826 0.00 0.00 0.00 2.75
2785 8144 4.437930 GCATACAAGTGAGTTCAATCAGCC 60.438 45.833 0.00 0.00 0.00 4.85
2817 8176 6.849588 AACCTTGCAATTTTCTTCATGTTC 57.150 33.333 0.00 0.00 0.00 3.18
2824 8183 7.098477 TGCAATTTTCTTCATGTTCCCATAAG 58.902 34.615 0.00 0.00 0.00 1.73
3066 8434 5.427378 CCTTGTCCTGGTTTGTGAAATTTT 58.573 37.500 0.00 0.00 0.00 1.82
3145 8513 2.240667 CCAGGTGAAGGAATCATGGTCT 59.759 50.000 0.00 0.00 40.97 3.85
3249 8617 6.263344 CAGTTCATCATCAAGCCAATTACAG 58.737 40.000 0.00 0.00 0.00 2.74
3262 8630 4.261363 GCCAATTACAGAAGAAGCATAGGC 60.261 45.833 0.00 0.00 41.61 3.93
3761 9129 8.305317 ACTTTTACCTTATCAGTAGTCTCACAC 58.695 37.037 0.00 0.00 0.00 3.82
3790 9158 8.158132 TCACATTAACACCATTGTTTCCTAGTA 58.842 33.333 0.00 0.00 43.89 1.82
3796 9164 7.882179 AACACCATTGTTTCCTAGTATGAAAC 58.118 34.615 18.79 18.79 43.89 2.78
3913 9281 8.184304 ACACTCCATTCTCTGTTACTATATCC 57.816 38.462 0.00 0.00 0.00 2.59
3940 9308 5.942236 AGATGAACATGTGACAGCAAAGTAT 59.058 36.000 18.76 0.63 0.00 2.12
4010 9381 4.094830 ACGAACCACCCTCTTTGTTAAT 57.905 40.909 0.00 0.00 0.00 1.40
4085 9458 3.893813 ACTCAGCAAGGCAGAAGAATTTT 59.106 39.130 0.00 0.00 0.00 1.82
4173 9546 3.083293 GTCTTCAACCTCCGAGTAGAGT 58.917 50.000 0.00 0.00 31.53 3.24
4260 9633 2.560105 GGTTTGAAGCAGCTTCCTGAAT 59.440 45.455 28.73 0.00 41.77 2.57
4272 9645 5.595542 CAGCTTCCTGAATGAATTGGGATTA 59.404 40.000 0.00 0.00 41.77 1.75
4377 9750 1.131126 GATGTTGCACTCCATCCAACG 59.869 52.381 8.37 0.00 41.17 4.10
4440 9813 2.121948 CCACTCTTCATCATCCCCTCA 58.878 52.381 0.00 0.00 0.00 3.86
4701 10074 3.814945 CTCAAATGTCTTGCGTTTCTCC 58.185 45.455 0.00 0.00 34.31 3.71
4731 10104 1.556373 CCCCTGGAGCATCACTGTCA 61.556 60.000 0.00 0.00 36.25 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 209 9.768662 AACAAAACGTAGTAGAAAAATCCTAGA 57.231 29.630 0.00 0.00 45.00 2.43
198 228 4.342665 TGGGGGTAGAATTCACAACAAAAC 59.657 41.667 8.44 0.00 0.00 2.43
202 232 2.714250 AGTGGGGGTAGAATTCACAACA 59.286 45.455 8.44 2.35 0.00 3.33
203 233 3.244770 TGAGTGGGGGTAGAATTCACAAC 60.245 47.826 8.44 2.80 0.00 3.32
214 244 1.702957 CAAGAGGTTTGAGTGGGGGTA 59.297 52.381 0.00 0.00 0.00 3.69
218 248 5.068987 TGATTTTTCAAGAGGTTTGAGTGGG 59.931 40.000 0.00 0.00 0.00 4.61
286 318 6.524101 AACATAATTGGGGTGTCATGTAAC 57.476 37.500 0.00 0.00 0.00 2.50
323 366 8.842358 TTGACTTTTATGATTCTTAGACCGTT 57.158 30.769 0.00 0.00 0.00 4.44
341 384 7.067737 TGTCGTTTTTAGGATTTCCTTGACTTT 59.932 33.333 4.08 0.00 46.09 2.66
349 392 5.344933 GCACAATGTCGTTTTTAGGATTTCC 59.655 40.000 0.00 0.00 0.00 3.13
368 411 2.358582 CGGGCTTGATATCATTGCACAA 59.641 45.455 24.00 3.33 31.59 3.33
369 412 1.948834 CGGGCTTGATATCATTGCACA 59.051 47.619 24.00 3.94 31.59 4.57
378 421 5.234466 AGCTCTAATTTCGGGCTTGATAT 57.766 39.130 0.00 0.00 0.00 1.63
476 520 3.717913 AGGGTTTAGAGTGGTGGTTACAA 59.282 43.478 0.00 0.00 0.00 2.41
585 629 4.863689 TGCATGCACAAGAATAAAAATCGG 59.136 37.500 18.46 0.00 0.00 4.18
630 674 8.461222 TGAAGATAACACCATTATCAAAGCAAG 58.539 33.333 8.86 0.00 34.66 4.01
661 706 4.605640 AGAGGATTGCAGCTAGAAGATC 57.394 45.455 0.00 0.00 0.00 2.75
708 753 4.454678 ACACAAACTCTCATGCTCTTTGA 58.545 39.130 10.22 0.00 0.00 2.69
734 779 2.549198 CCCTATGCATGTGCCAGCG 61.549 63.158 10.16 0.00 41.18 5.18
737 782 4.662023 CACCCTATGCATGTGCCA 57.338 55.556 10.16 0.00 41.18 4.92
752 805 5.390991 GGAGTAGTTAATTGCAAGTGAGCAC 60.391 44.000 10.14 2.27 45.61 4.40
777 830 5.351465 GTGTGTGTTACATTATGGGACAGAG 59.649 44.000 0.00 0.00 42.04 3.35
778 831 5.221742 TGTGTGTGTTACATTATGGGACAGA 60.222 40.000 0.00 0.00 42.04 3.41
779 832 5.000591 TGTGTGTGTTACATTATGGGACAG 58.999 41.667 0.00 0.00 42.04 3.51
780 833 4.974399 TGTGTGTGTTACATTATGGGACA 58.026 39.130 0.00 0.00 42.74 4.02
795 848 3.724716 CGCTTCGTTCCATAATGTGTGTG 60.725 47.826 0.00 0.00 0.00 3.82
797 850 2.670905 TCGCTTCGTTCCATAATGTGTG 59.329 45.455 0.00 0.00 0.00 3.82
798 851 2.930040 CTCGCTTCGTTCCATAATGTGT 59.070 45.455 0.00 0.00 0.00 3.72
799 852 2.930040 ACTCGCTTCGTTCCATAATGTG 59.070 45.455 0.00 0.00 0.00 3.21
809 2942 3.570926 TGATTGACTACTCGCTTCGTT 57.429 42.857 0.00 0.00 0.00 3.85
813 2946 8.723942 AGATAAAAATGATTGACTACTCGCTT 57.276 30.769 0.00 0.00 0.00 4.68
851 2990 9.762933 TTGATTTGTTTCTAGAATTCCTTTTGG 57.237 29.630 5.89 0.00 42.21 3.28
886 3416 1.982958 GAACCCCTCTCCCAAAGTACA 59.017 52.381 0.00 0.00 0.00 2.90
887 3417 1.982958 TGAACCCCTCTCCCAAAGTAC 59.017 52.381 0.00 0.00 0.00 2.73
888 3418 2.426431 TGAACCCCTCTCCCAAAGTA 57.574 50.000 0.00 0.00 0.00 2.24
889 3419 1.529744 TTGAACCCCTCTCCCAAAGT 58.470 50.000 0.00 0.00 0.00 2.66
890 3420 2.239400 GTTTGAACCCCTCTCCCAAAG 58.761 52.381 0.00 0.00 0.00 2.77
894 3424 0.036294 CTCGTTTGAACCCCTCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
903 3433 2.855963 TGACGACTTGACTCGTTTGAAC 59.144 45.455 0.00 0.00 46.80 3.18
951 3481 4.101448 GGGCTCGACCTGTGGCAT 62.101 66.667 0.00 0.00 38.30 4.40
962 3496 2.747855 GTGGGCAGAAAGGGCTCG 60.748 66.667 0.00 0.00 33.31 5.03
1117 6466 3.615709 GGTGGCTTTGGTGGTGGC 61.616 66.667 0.00 0.00 0.00 5.01
1243 6594 1.764454 GAGGAGGAGGAGGAAGGGC 60.764 68.421 0.00 0.00 0.00 5.19
1333 6692 2.060980 GCGGGACCAGAGGACAGAT 61.061 63.158 0.00 0.00 0.00 2.90
1336 6695 4.988716 ACGCGGGACCAGAGGACA 62.989 66.667 12.47 0.00 0.00 4.02
1684 7043 4.025401 GTGAGGTTGTTGCCCGCG 62.025 66.667 0.00 0.00 0.00 6.46
1714 7073 2.278206 CGCTGGTCCAGATCGACG 60.278 66.667 23.77 12.00 32.44 5.12
1868 7227 2.100916 CCATCGTGTAGAATTCCTCCGT 59.899 50.000 0.65 0.00 0.00 4.69
1870 7229 3.458189 CACCATCGTGTAGAATTCCTCC 58.542 50.000 0.65 0.00 35.10 4.30
1969 7328 2.087646 GCCTCCATTTCCAGTGACTTC 58.912 52.381 0.00 0.00 0.00 3.01
2158 7517 5.090139 CCAATCTCCCATAGTATCCTCTGT 58.910 45.833 0.00 0.00 0.00 3.41
2248 7607 6.752285 TTGACATGGATATCCTTCTCATCA 57.248 37.500 22.35 13.55 36.82 3.07
2251 7610 6.505048 ACATTGACATGGATATCCTTCTCA 57.495 37.500 22.35 15.82 34.27 3.27
2514 7873 4.372999 AGGGCAGCTTCTTGGGGC 62.373 66.667 0.00 0.00 0.00 5.80
2530 7889 0.254178 CCACCCCAAGATGGACAGAG 59.746 60.000 0.00 0.00 40.96 3.35
2695 8054 5.793817 TGCTCTGAAAGAATAACTACTGCA 58.206 37.500 0.00 0.00 46.34 4.41
2701 8060 4.655963 TGCCTTGCTCTGAAAGAATAACT 58.344 39.130 0.00 0.00 46.34 2.24
2785 8144 6.917533 AGAAAATTGCAAGGTTACAGATCAG 58.082 36.000 4.94 0.00 0.00 2.90
2817 8176 3.914426 AGCAACAGTAGGACTTATGGG 57.086 47.619 0.00 0.00 0.00 4.00
2824 8183 3.265791 CTGGATGAAGCAACAGTAGGAC 58.734 50.000 0.00 0.00 0.00 3.85
2892 8260 3.703001 AGTACCTGTGATGGGAACTTG 57.297 47.619 0.00 0.00 0.00 3.16
3039 8407 2.714250 TCACAAACCAGGACAAGGGTAT 59.286 45.455 0.00 0.00 36.05 2.73
3249 8617 5.533482 TCTTATCTTCGCCTATGCTTCTTC 58.467 41.667 0.00 0.00 34.43 2.87
3262 8630 7.578852 TGCTGCAATGAATTATCTTATCTTCG 58.421 34.615 0.00 0.00 0.00 3.79
3320 8688 2.883122 ACGAGGTAGGAGAAGTCACT 57.117 50.000 0.00 0.00 0.00 3.41
3790 9158 6.790319 ACAGTCCAATAGGTAAAGGTTTCAT 58.210 36.000 0.00 0.00 35.89 2.57
3796 9164 4.331968 TGCAACAGTCCAATAGGTAAAGG 58.668 43.478 0.00 0.00 35.89 3.11
3913 9281 3.253230 TGCTGTCACATGTTCATCTACG 58.747 45.455 0.00 0.00 0.00 3.51
4010 9381 5.312895 AGTTGTAACATGCAATACAGACCA 58.687 37.500 9.43 0.00 33.85 4.02
4085 9458 3.960102 AGTTCCAGCATTTGACCAAGAAA 59.040 39.130 0.00 0.00 0.00 2.52
4260 9633 5.439721 CTGATGGACACTAATCCCAATTCA 58.560 41.667 0.00 0.00 38.06 2.57
4272 9645 0.908198 GGAAGAGGCTGATGGACACT 59.092 55.000 0.00 0.00 0.00 3.55
4377 9750 1.666189 GAGAAGCGGCTGACAAATACC 59.334 52.381 1.81 0.00 0.00 2.73
4440 9813 3.052033 AGCTACTGAACCCTAGGTGGTAT 60.052 47.826 8.29 0.00 37.76 2.73
4686 10059 0.179059 TGCTGGAGAAACGCAAGACA 60.179 50.000 0.00 0.00 43.62 3.41
4701 10074 2.194056 CCAGGGGTAGGCATGCTG 59.806 66.667 18.92 5.73 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.