AutoCloner

Multiple sequence alignment - TraesCS2B01G157300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G157300	chr2B	100.000	1319	0	0	1	1319	131305611	131306929	0.000000e+00	2436
1	TraesCS2B01G157300	chr2B	100.000	716	0	0	1556	2271	131307166	131307881	0.000000e+00	1323
2	TraesCS2B01G157300	chr2B	94.286	315	18	0	3	317	683266551	683266865	1.220000e-132	483
3	TraesCS2B01G157300	chr4D	94.034	989	56	2	319	1305	298273391	298274378	0.000000e+00	1496
4	TraesCS2B01G157300	chr4D	95.584	317	14	0	1	317	298272927	298273243	2.010000e-140	508
5	TraesCS2B01G157300	chr7D	93.826	988	58	2	319	1304	544560136	544559150	0.000000e+00	1483
6	TraesCS2B01G157300	chr7D	93.623	988	60	2	319	1304	599239432	599238446	0.000000e+00	1472
7	TraesCS2B01G157300	chr7D	94.953	317	16	0	1	317	544560600	544560284	4.360000e-137	497
8	TraesCS2B01G157300	chr7D	94.006	317	14	1	1	317	599239891	599239580	2.040000e-130	475
9	TraesCS2B01G157300	chr3D	93.516	987	61	2	319	1303	31890642	31889657	0.000000e+00	1465
10	TraesCS2B01G157300	chr3D	94.322	317	17	1	1	317	31891105	31890790	3.390000e-133	484
11	TraesCS2B01G157300	chr4B	94.241	903	49	2	320	1222	605895291	605894392	0.000000e+00	1376
12	TraesCS2B01G157300	chr4B	94.322	317	17	1	1	317	605895755	605895440	3.390000e-133	484
13	TraesCS2B01G157300	chr6B	91.793	987	78	2	319	1303	173438150	173437165	0.000000e+00	1371
14	TraesCS2B01G157300	chr7B	91.489	987	81	2	319	1303	706500606	706501591	0.000000e+00	1354
15	TraesCS2B01G157300	chr7B	92.429	317	24	0	1	317	706500142	706500458	9.560000e-124	453
16	TraesCS2B01G157300	chr1A	91.304	989	83	2	319	1305	65651886	65650899	0.000000e+00	1347
17	TraesCS2B01G157300	chr1A	91.167	317	28	0	1	317	65652350	65652034	4.480000e-117	431
18	TraesCS2B01G157300	chr7A	90.587	988	89	3	319	1304	79128119	79127134	0.000000e+00	1306
19	TraesCS2B01G157300	chr2D	85.000	580	55	17	1700	2271	79927027	79927582	5.480000e-156	560
20	TraesCS2B01G157300	chr2D	87.571	354	24	10	1916	2268	79915041	79915375	2.110000e-105	392
21	TraesCS2B01G157300	chr2D	92.118	203	15	1	1596	1797	79914779	79914981	3.690000e-73	285
22	TraesCS2B01G157300	chr4A	91.798	317	26	0	1	317	666488601	666488917	2.070000e-120	442
23	TraesCS2B01G157300	chr2A	82.463	479	58	19	1598	2067	80531863	80532324	1.630000e-106	396

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G157300	chr2B	131305611	131307881	2270	False	1879.5	2436	100.0000	1	2271	2	chr2B.!!$F2	2270
1	TraesCS2B01G157300	chr4D	298272927	298274378	1451	False	1002.0	1496	94.8090	1	1305	2	chr4D.!!$F1	1304
2	TraesCS2B01G157300	chr7D	544559150	544560600	1450	True	990.0	1483	94.3895	1	1304	2	chr7D.!!$R1	1303
3	TraesCS2B01G157300	chr7D	599238446	599239891	1445	True	973.5	1472	93.8145	1	1304	2	chr7D.!!$R2	1303
4	TraesCS2B01G157300	chr3D	31889657	31891105	1448	True	974.5	1465	93.9190	1	1303	2	chr3D.!!$R1	1302
5	TraesCS2B01G157300	chr4B	605894392	605895755	1363	True	930.0	1376	94.2815	1	1222	2	chr4B.!!$R1	1221
6	TraesCS2B01G157300	chr6B	173437165	173438150	985	True	1371.0	1371	91.7930	319	1303	1	chr6B.!!$R1	984
7	TraesCS2B01G157300	chr7B	706500142	706501591	1449	False	903.5	1354	91.9590	1	1303	2	chr7B.!!$F1	1302
8	TraesCS2B01G157300	chr1A	65650899	65652350	1451	True	889.0	1347	91.2355	1	1305	2	chr1A.!!$R1	1304
9	TraesCS2B01G157300	chr7A	79127134	79128119	985	True	1306.0	1306	90.5870	319	1304	1	chr7A.!!$R1	985
10	TraesCS2B01G157300	chr2D	79927027	79927582	555	False	560.0	560	85.0000	1700	2271	1	chr2D.!!$F1	571
11	TraesCS2B01G157300	chr2D	79914779	79915375	596	False	338.5	392	89.8445	1596	2268	2	chr2D.!!$F2	672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
426	578	0.032815	TCAAACGTCGCCACATGAGA	59.967	50.0	0.0	0.0	0.0	3.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1582	1736	0.105778	GTAGGATGCTGGAGCTGGTC	59.894	60.0	0.0	0.0	42.66	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	0.389948	CTTCGGTTCCCAAGTCCTCG	60.390	60.000	0.00	0.00	0.00	4.63
72	73	2.748251	CAATTGTGGCGGGCCGTA	60.748	61.111	28.82	14.57	39.42	4.02
193	194	2.064014	GTTACGTCCAGCTAACACCAC	58.936	52.381	0.00	0.00	0.00	4.16
227	233	7.147320	ACCATGAATGAATTGATAGACCCACTA	60.147	37.037	0.00	0.00	35.42	2.74
246	252	2.359850	GCTGGACATGGCGGACAA	60.360	61.111	0.00	0.00	0.00	3.18
308	314	1.872388	TTCTGAACATTCCGTTGCGA	58.128	45.000	0.00	0.00	38.19	5.10
324	476	2.125512	GACACGGCGGAGAATGCT	60.126	61.111	13.24	0.00	0.00	3.79
327	479	0.249489	ACACGGCGGAGAATGCTATC	60.249	55.000	13.24	0.00	0.00	2.08
340	492	6.545298	GGAGAATGCTATCTGGAAACTCAAAT	59.455	38.462	0.00	0.00	0.00	2.32
402	554	1.101331	GGATCTTACCGGACGAGTGT	58.899	55.000	9.46	0.00	0.00	3.55
425	577	0.439985	CTCAAACGTCGCCACATGAG	59.560	55.000	0.00	0.00	0.00	2.90
426	578	0.032815	TCAAACGTCGCCACATGAGA	59.967	50.000	0.00	0.00	0.00	3.27
456	608	2.592212	CTGCAAGGTTTGTTTGGCG	58.408	52.632	0.00	0.00	0.00	5.69
511	663	3.499737	CACATGCTCGCCGGTTCC	61.500	66.667	1.90	0.00	0.00	3.62
686	838	2.358247	ACACGAACGGGATGGCAC	60.358	61.111	2.83	0.00	0.00	5.01
763	915	2.744202	CCGAAGCAGCAAGTTTCTATGT	59.256	45.455	0.00	0.00	35.53	2.29
825	977	0.593128	AAATCAACACTGACGCTGCC	59.407	50.000	0.00	0.00	33.30	4.85
872	1024	2.746277	GGGTGGCATCGCTCGTTT	60.746	61.111	0.00	0.00	0.00	3.60
922	1074	2.772622	GGATCCCGGGGGTGACAT	60.773	66.667	23.50	4.94	36.47	3.06
930	1082	0.681733	CGGGGGTGACATATCCTCTG	59.318	60.000	0.00	0.00	0.00	3.35
951	1103	4.214327	GCGGAGGCTCTAGCGCTT	62.214	66.667	18.68	0.00	43.26	4.68
963	1115	3.097614	TCTAGCGCTTAAGGAAGGAGTT	58.902	45.455	18.68	0.00	32.84	3.01
1208	1360	3.435275	TCTGTGACTGAGAGCTGGTTAT	58.565	45.455	0.00	0.00	0.00	1.89
1281	1435	5.334414	CGAGCACTTGTTGAATAAAGCTCTT	60.334	40.000	18.94	0.00	43.61	2.85
1573	1727	3.123674	CGCTTCTGGAGTGTACACC	57.876	57.895	22.28	13.34	0.00	4.16
1574	1728	0.317160	CGCTTCTGGAGTGTACACCA	59.683	55.000	22.28	13.30	35.35	4.17
1575	1729	1.797025	GCTTCTGGAGTGTACACCAC	58.203	55.000	22.28	15.45	44.89	4.16
1584	1738	2.165319	GTGTACACCACTCCCTTGAC	57.835	55.000	15.42	0.00	41.11	3.18
1585	1739	1.053424	TGTACACCACTCCCTTGACC	58.947	55.000	0.00	0.00	0.00	4.02
1586	1740	1.053424	GTACACCACTCCCTTGACCA	58.947	55.000	0.00	0.00	0.00	4.02
1587	1741	1.002087	GTACACCACTCCCTTGACCAG	59.998	57.143	0.00	0.00	0.00	4.00
1588	1742	1.302832	CACCACTCCCTTGACCAGC	60.303	63.158	0.00	0.00	0.00	4.85
1589	1743	1.462238	ACCACTCCCTTGACCAGCT	60.462	57.895	0.00	0.00	0.00	4.24
1590	1744	1.298014	CCACTCCCTTGACCAGCTC	59.702	63.158	0.00	0.00	0.00	4.09
1591	1745	1.298014	CACTCCCTTGACCAGCTCC	59.702	63.158	0.00	0.00	0.00	4.70
1592	1746	1.152030	ACTCCCTTGACCAGCTCCA	60.152	57.895	0.00	0.00	0.00	3.86
1593	1747	1.197430	ACTCCCTTGACCAGCTCCAG	61.197	60.000	0.00	0.00	0.00	3.86
1594	1748	2.045536	CCCTTGACCAGCTCCAGC	60.046	66.667	0.00	0.00	42.49	4.85
1616	1770	1.435563	TCCTACTCCTTTCCTCCCACA	59.564	52.381	0.00	0.00	0.00	4.17
1622	1776	1.916181	TCCTTTCCTCCCACAATCTCC	59.084	52.381	0.00	0.00	0.00	3.71
1627	1781	0.107312	CCTCCCACAATCTCCAGCTG	60.107	60.000	6.78	6.78	0.00	4.24
1653	1807	1.345715	CCCTCCGCCATTACTCCCTT	61.346	60.000	0.00	0.00	0.00	3.95
1665	1819	0.539438	ACTCCCTTGCGGCAATTTGA	60.539	50.000	16.80	11.56	0.00	2.69
1673	1827	0.179189	GCGGCAATTTGAAGTCTCCG	60.179	55.000	0.00	3.70	38.51	4.63
1733	1887	1.641192	TCTAGGAGACTGGAAGGAGCA	59.359	52.381	0.00	0.00	45.89	4.26
1734	1888	2.043115	TCTAGGAGACTGGAAGGAGCAA	59.957	50.000	0.00	0.00	45.89	3.91
1747	1901	4.450419	GGAAGGAGCAAAGATGACGATATG	59.550	45.833	0.00	0.00	0.00	1.78
1784	1938	2.126228	AAGTTCGCGCGGAATCGA	60.126	55.556	31.69	6.17	36.92	3.59
1817	1972	2.008329	GATTGCTCCAAGCTGAGTCAG	58.992	52.381	16.21	16.21	42.97	3.51
1854	2010	3.065371	GGAGATTCGTGCAAAAATCCGAT	59.935	43.478	15.27	1.94	33.29	4.18
1887	2046	4.657824	CCGCGGGAGTCGTTGTGT	62.658	66.667	20.10	0.00	41.72	3.72
1893	2052	0.320771	GGGAGTCGTTGTGTGCTGAT	60.321	55.000	0.00	0.00	0.00	2.90
1914	2073	4.333913	TGTTTGCACATTAGCATTTGGT	57.666	36.364	0.00	0.00	45.19	3.67
1944	2103	1.671054	GGAAAGTGCGCTACTGGCA	60.671	57.895	9.73	0.00	40.26	4.92
2012	2171	7.567048	GCGATCATTGGTAGAAACAGTATAACG	60.567	40.741	0.00	0.00	0.00	3.18
2046	2205	2.652079	CCATCTATCGCGCGCTGTG	61.652	63.158	30.48	17.80	0.00	3.66
2063	2222	2.335011	GGGCGCACCAAACTGTTC	59.665	61.111	10.83	0.00	39.85	3.18
2064	2223	2.485795	GGGCGCACCAAACTGTTCA	61.486	57.895	10.83	0.00	39.85	3.18
2065	2224	1.435515	GGCGCACCAAACTGTTCAA	59.564	52.632	10.83	0.00	35.26	2.69
2066	2225	0.179124	GGCGCACCAAACTGTTCAAA	60.179	50.000	10.83	0.00	35.26	2.69
2067	2226	0.920664	GCGCACCAAACTGTTCAAAC	59.079	50.000	0.30	0.00	0.00	2.93
2111	2270	3.746949	CTGGATCTCAGCCCCGCAC	62.747	68.421	0.00	0.00	36.60	5.34
2159	2319	4.585070	CCGGACATGGCATCCAAT	57.415	55.556	0.00	0.00	36.95	3.16
2160	2320	2.811307	CCGGACATGGCATCCAATT	58.189	52.632	0.00	0.00	36.95	2.32
2161	2321	0.670162	CCGGACATGGCATCCAATTC	59.330	55.000	0.00	0.00	36.95	2.17
2162	2322	0.670162	CGGACATGGCATCCAATTCC	59.330	55.000	0.00	3.84	36.95	3.01
2180	2340	1.978617	CACACCATCAAGCACCCCC	60.979	63.158	0.00	0.00	0.00	5.40
2184	2344	4.776322	CATCAAGCACCCCCGCGA	62.776	66.667	8.23	0.00	36.85	5.87
2185	2345	4.473520	ATCAAGCACCCCCGCGAG	62.474	66.667	8.23	0.00	36.85	5.03
2250	2410	1.734477	GTCGGCGATGGATCATCCG	60.734	63.158	14.79	9.75	40.17	4.18
2255	2415	2.743928	GATGGATCATCCGCCGCC	60.744	66.667	0.00	0.00	40.17	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	3.694566	GGAACCGAAGCATGTAGGAAATT	59.305	43.478	0.00	0.00	0.00	1.82
38	39	2.820037	GCCCGCCAAGTAGCAGAC	60.820	66.667	0.00	0.00	0.00	3.51
72	73	4.586235	ACCGGCCTGCAGTGCTTT	62.586	61.111	17.60	7.99	0.00	3.51
227	233	2.045926	GTCCGCCATGTCCAGCTT	60.046	61.111	0.00	0.00	0.00	3.74
246	252	1.280457	AAGATCTCCCGAACCTGCTT	58.720	50.000	0.00	0.00	0.00	3.91
308	314	0.249489	GATAGCATTCTCCGCCGTGT	60.249	55.000	0.00	0.00	0.00	4.49
317	323	7.951347	AATTTGAGTTTCCAGATAGCATTCT	57.049	32.000	0.00	0.00	0.00	2.40
324	476	7.510675	AGGGACTAATTTGAGTTTCCAGATA	57.489	36.000	0.00	0.00	36.02	1.98
402	554	0.669619	TGTGGCGACGTTTGAGAGTA	59.330	50.000	0.00	0.00	0.00	2.59
425	577	1.085091	CTTGCAGGTGCTGATCTGTC	58.915	55.000	3.18	0.00	42.66	3.51
426	578	0.322277	CCTTGCAGGTGCTGATCTGT	60.322	55.000	3.18	0.00	42.66	3.41
456	608	4.624015	CATGCTCCAGATCTTCTTCTCTC	58.376	47.826	0.00	0.00	0.00	3.20
511	663	2.045926	CAGCCTGGTTTCCTCCCG	60.046	66.667	0.00	0.00	0.00	5.14
523	675	0.610174	TTGATGTCGAAGAGCAGCCT	59.390	50.000	0.00	0.00	36.95	4.58
686	838	6.538021	CCATCTTACTGAAAAGACAGGATCAG	59.462	42.308	0.00	0.00	43.79	2.90
763	915	2.045045	CCATCCGAAGCCTGGCAA	60.045	61.111	22.65	0.64	0.00	4.52
872	1024	1.299648	CCCTTGAAGCCCGATGTCA	59.700	57.895	0.00	0.00	0.00	3.58
905	1057	0.840722	ATATGTCACCCCCGGGATCC	60.841	60.000	26.32	1.92	38.96	3.36
930	1082	2.257067	GCTAGAGCCTCCGCGATC	59.743	66.667	8.23	0.00	41.18	3.69
951	1103	4.877378	TGCGAGTAAAACTCCTTCCTTA	57.123	40.909	1.63	0.00	42.12	2.69
1147	1299	1.134946	GCACACAAATATGCTGGACCC	59.865	52.381	0.00	0.00	38.84	4.46
1208	1360	1.064166	CAGGAACGGGGGAGTAGAGTA	60.064	57.143	0.00	0.00	0.00	2.59
1555	1709	0.317160	TGGTGTACACTCCAGAAGCG	59.683	55.000	24.55	0.00	34.88	4.68
1556	1710	1.797025	GTGGTGTACACTCCAGAAGC	58.203	55.000	24.55	6.80	46.72	3.86
1566	1720	1.053424	GGTCAAGGGAGTGGTGTACA	58.947	55.000	0.00	0.00	0.00	2.90
1567	1721	1.002087	CTGGTCAAGGGAGTGGTGTAC	59.998	57.143	0.00	0.00	0.00	2.90
1568	1722	1.348064	CTGGTCAAGGGAGTGGTGTA	58.652	55.000	0.00	0.00	0.00	2.90
1569	1723	2.056906	GCTGGTCAAGGGAGTGGTGT	62.057	60.000	0.00	0.00	0.00	4.16
1570	1724	1.302832	GCTGGTCAAGGGAGTGGTG	60.303	63.158	0.00	0.00	0.00	4.17
1571	1725	1.462238	AGCTGGTCAAGGGAGTGGT	60.462	57.895	0.00	0.00	0.00	4.16
1572	1726	1.298014	GAGCTGGTCAAGGGAGTGG	59.702	63.158	1.28	0.00	0.00	4.00
1573	1727	1.298014	GGAGCTGGTCAAGGGAGTG	59.702	63.158	9.30	0.00	0.00	3.51
1574	1728	1.152030	TGGAGCTGGTCAAGGGAGT	60.152	57.895	9.30	0.00	0.00	3.85
1575	1729	1.601171	CTGGAGCTGGTCAAGGGAG	59.399	63.158	9.30	0.00	0.00	4.30
1576	1730	2.596851	GCTGGAGCTGGTCAAGGGA	61.597	63.158	12.84	0.00	38.21	4.20
1577	1731	2.045536	GCTGGAGCTGGTCAAGGG	60.046	66.667	12.84	0.00	38.21	3.95
1578	1732	0.747283	GATGCTGGAGCTGGTCAAGG	60.747	60.000	12.84	1.71	42.66	3.61
1579	1733	0.747283	GGATGCTGGAGCTGGTCAAG	60.747	60.000	6.89	6.89	42.66	3.02
1580	1734	1.203441	AGGATGCTGGAGCTGGTCAA	61.203	55.000	9.30	0.00	42.66	3.18
1581	1735	0.325577	TAGGATGCTGGAGCTGGTCA	60.326	55.000	9.30	0.00	42.66	4.02
1582	1736	0.105778	GTAGGATGCTGGAGCTGGTC	59.894	60.000	0.00	0.00	42.66	4.02
1583	1737	0.326048	AGTAGGATGCTGGAGCTGGT	60.326	55.000	0.00	0.00	42.66	4.00
1584	1738	0.392336	GAGTAGGATGCTGGAGCTGG	59.608	60.000	0.00	0.00	42.66	4.85
1585	1739	0.392336	GGAGTAGGATGCTGGAGCTG	59.608	60.000	0.00	0.00	42.66	4.24
1586	1740	0.264359	AGGAGTAGGATGCTGGAGCT	59.736	55.000	0.00	0.00	42.66	4.09
1587	1741	1.127343	AAGGAGTAGGATGCTGGAGC	58.873	55.000	0.00	0.00	42.50	4.70
1588	1742	2.103941	GGAAAGGAGTAGGATGCTGGAG	59.896	54.545	0.00	0.00	0.00	3.86
1589	1743	2.119495	GGAAAGGAGTAGGATGCTGGA	58.881	52.381	0.00	0.00	0.00	3.86
1590	1744	2.103941	GAGGAAAGGAGTAGGATGCTGG	59.896	54.545	0.00	0.00	0.00	4.85
1591	1745	2.103941	GGAGGAAAGGAGTAGGATGCTG	59.896	54.545	0.00	0.00	0.00	4.41
1592	1746	2.403561	GGAGGAAAGGAGTAGGATGCT	58.596	52.381	0.00	0.00	0.00	3.79
1593	1747	1.418264	GGGAGGAAAGGAGTAGGATGC	59.582	57.143	0.00	0.00	0.00	3.91
1594	1748	2.436173	GTGGGAGGAAAGGAGTAGGATG	59.564	54.545	0.00	0.00	0.00	3.51
1616	1770	2.510238	GCGTCGCAGCTGGAGATT	60.510	61.111	17.12	0.00	0.00	2.40
1638	1792	2.180204	CGCAAGGGAGTAATGGCGG	61.180	63.158	0.00	0.00	40.70	6.13
1653	1807	0.881118	GGAGACTTCAAATTGCCGCA	59.119	50.000	0.00	0.00	0.00	5.69
1673	1827	5.295540	GGCTCTACTTCCATTCAATGTCTTC	59.704	44.000	0.00	0.00	0.00	2.87
1747	1901	2.054453	GCTTTGGAGCCATGGGGAC	61.054	63.158	15.13	0.00	43.29	4.46
1784	1938	1.523758	AGCAATCGTTCGCTCCTTTT	58.476	45.000	0.00	0.00	31.16	2.27
1817	1972	0.804364	TCTCCGCACACAATGATTGC	59.196	50.000	4.84	0.00	0.00	3.56
1824	1979	1.565156	GCACGAATCTCCGCACACAA	61.565	55.000	0.00	0.00	0.00	3.33
1870	2026	4.657824	ACACAACGACTCCCGCGG	62.658	66.667	21.04	21.04	43.32	6.46
1874	2033	0.320771	ATCAGCACACAACGACTCCC	60.321	55.000	0.00	0.00	0.00	4.30
1881	2040	2.206815	TGCAAACATCAGCACACAAC	57.793	45.000	0.00	0.00	35.51	3.32
1887	2046	2.557490	TGCTAATGTGCAAACATCAGCA	59.443	40.909	11.72	11.72	45.98	4.41
1893	2052	4.056740	CACCAAATGCTAATGTGCAAACA	58.943	39.130	0.00	0.00	46.61	2.83
1911	2070	3.127895	CACTTTCCGTTTTTCTCACACCA	59.872	43.478	0.00	0.00	0.00	4.17
1914	2073	2.223157	CGCACTTTCCGTTTTTCTCACA	60.223	45.455	0.00	0.00	0.00	3.58
1951	2110	1.741770	GCTGGATTATAGCCGCCCG	60.742	63.158	0.00	0.00	35.15	6.13
1957	2116	1.014564	GGTCGCCGCTGGATTATAGC	61.015	60.000	0.00	0.00	37.80	2.97
1982	2141	4.183865	TGTTTCTACCAATGATCGCTCAG	58.816	43.478	0.00	0.00	34.12	3.35
2012	2171	2.139118	GATGGTAGCGAATCTTCTGCC	58.861	52.381	0.00	1.03	35.91	4.85
2046	2205	2.010582	TTGAACAGTTTGGTGCGCCC	62.011	55.000	15.15	6.44	0.00	6.13
2055	2214	6.799925	CGTAGTGTTTGAAGTTTGAACAGTTT	59.200	34.615	14.16	4.65	37.86	2.66
2058	2217	5.263185	CCGTAGTGTTTGAAGTTTGAACAG	58.737	41.667	5.53	0.00	34.29	3.16
2061	2220	3.942748	AGCCGTAGTGTTTGAAGTTTGAA	59.057	39.130	0.00	0.00	0.00	2.69
2062	2221	3.537580	AGCCGTAGTGTTTGAAGTTTGA	58.462	40.909	0.00	0.00	0.00	2.69
2063	2222	3.311322	TGAGCCGTAGTGTTTGAAGTTTG	59.689	43.478	0.00	0.00	0.00	2.93
2064	2223	3.537580	TGAGCCGTAGTGTTTGAAGTTT	58.462	40.909	0.00	0.00	0.00	2.66
2065	2224	3.188159	TGAGCCGTAGTGTTTGAAGTT	57.812	42.857	0.00	0.00	0.00	2.66
2066	2225	2.902705	TGAGCCGTAGTGTTTGAAGT	57.097	45.000	0.00	0.00	0.00	3.01
2067	2226	7.715265	ATATATTGAGCCGTAGTGTTTGAAG	57.285	36.000	0.00	0.00	0.00	3.02
2157	2317	1.895131	GGTGCTTGATGGTGTGGAATT	59.105	47.619	0.00	0.00	0.00	2.17
2158	2318	1.549203	GGTGCTTGATGGTGTGGAAT	58.451	50.000	0.00	0.00	0.00	3.01
2159	2319	0.539438	GGGTGCTTGATGGTGTGGAA	60.539	55.000	0.00	0.00	0.00	3.53
2160	2320	1.074775	GGGTGCTTGATGGTGTGGA	59.925	57.895	0.00	0.00	0.00	4.02
2161	2321	1.978617	GGGGTGCTTGATGGTGTGG	60.979	63.158	0.00	0.00	0.00	4.17
2162	2322	1.978617	GGGGGTGCTTGATGGTGTG	60.979	63.158	0.00	0.00	0.00	3.82
2184	2344	2.564721	GGCTTTTCGGCACCTTGCT	61.565	57.895	0.00	0.00	44.28	3.91
2185	2345	2.049156	GGCTTTTCGGCACCTTGC	60.049	61.111	0.00	0.00	44.08	4.01
2186	2346	3.442441	TGGCTTTTCGGCACCTTG	58.558	55.556	0.00	0.00	44.12	3.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.