Multiple sequence alignment - TraesCS2B01G156200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G156200 chr2B 100.000 7068 0 0 1 7068 128373212 128380279 0.000000e+00 13053.0
1 TraesCS2B01G156200 chr2B 99.579 1902 8 0 2450 4351 98594410 98592509 0.000000e+00 3469.0
2 TraesCS2B01G156200 chr2B 99.693 1629 5 0 2726 4354 612090631 612092259 0.000000e+00 2981.0
3 TraesCS2B01G156200 chr2B 91.386 1335 79 14 3041 4351 569153552 569154874 0.000000e+00 1796.0
4 TraesCS2B01G156200 chr2B 94.635 671 36 0 1451 2121 569150474 569151144 0.000000e+00 1040.0
5 TraesCS2B01G156200 chr2B 94.419 645 32 1 6428 7068 733878591 733877947 0.000000e+00 989.0
6 TraesCS2B01G156200 chr2B 91.921 656 40 2 6426 7068 776404944 776405599 0.000000e+00 905.0
7 TraesCS2B01G156200 chr2B 91.859 651 37 7 6428 7065 158635197 158635844 0.000000e+00 894.0
8 TraesCS2B01G156200 chr2B 100.000 445 0 0 1287 1731 98598370 98597926 0.000000e+00 822.0
9 TraesCS2B01G156200 chr2B 99.123 456 4 0 1287 1742 612086505 612086960 0.000000e+00 821.0
10 TraesCS2B01G156200 chr2B 89.331 478 36 11 2444 2911 756029018 756029490 2.840000e-163 586.0
11 TraesCS2B01G156200 chr2B 93.860 342 15 1 2116 2451 569151337 569151678 1.760000e-140 510.0
12 TraesCS2B01G156200 chr2B 88.971 408 27 1 1461 1868 756026331 756026720 8.240000e-134 488.0
13 TraesCS2B01G156200 chr1B 99.529 1909 9 0 2444 4352 439124016 439125924 0.000000e+00 3476.0
14 TraesCS2B01G156200 chr1B 98.708 1006 11 2 1624 2628 439123076 439124080 0.000000e+00 1784.0
15 TraesCS2B01G156200 chr1B 98.594 498 7 0 1290 1787 439122706 439123203 0.000000e+00 881.0
16 TraesCS2B01G156200 chr1B 94.085 541 28 4 1 540 355681468 355682005 0.000000e+00 819.0
17 TraesCS2B01G156200 chr1B 93.147 394 23 3 526 919 355681955 355682344 6.150000e-160 575.0
18 TraesCS2B01G156200 chr1B 76.804 388 62 22 4902 5282 673872363 673872729 7.240000e-45 193.0
19 TraesCS2B01G156200 chr1A 99.528 1908 9 0 2444 4351 543484057 543485964 0.000000e+00 3474.0
20 TraesCS2B01G156200 chr1A 98.708 1006 12 1 1624 2628 543483116 543484121 0.000000e+00 1784.0
21 TraesCS2B01G156200 chr1A 98.594 498 7 0 1290 1787 543482746 543483243 0.000000e+00 881.0
22 TraesCS2B01G156200 chr1A 87.611 226 23 4 3722 3945 463932113 463932335 2.530000e-64 257.0
23 TraesCS2B01G156200 chr1A 100.000 32 0 0 4724 4755 356468569 356468600 7.660000e-05 60.2
24 TraesCS2B01G156200 chr5A 99.268 1912 10 2 2444 4351 365332778 365334689 0.000000e+00 3450.0
25 TraesCS2B01G156200 chr5A 98.708 1006 12 1 1624 2628 365331837 365332842 0.000000e+00 1784.0
26 TraesCS2B01G156200 chr5A 98.204 501 9 0 1287 1787 365331464 365331964 0.000000e+00 876.0
27 TraesCS2B01G156200 chr5A 89.766 342 25 3 2116 2451 573608437 573608100 5.070000e-116 429.0
28 TraesCS2B01G156200 chr5A 79.695 394 53 20 4904 5284 445152596 445152975 7.030000e-65 259.0
29 TraesCS2B01G156200 chr5A 93.162 117 8 0 2005 2121 573608761 573608645 9.430000e-39 172.0
30 TraesCS2B01G156200 chr6B 99.317 1902 13 0 2450 4351 678121772 678119871 0.000000e+00 3441.0
31 TraesCS2B01G156200 chr6B 98.807 1006 11 1 1624 2628 678122719 678121714 0.000000e+00 1790.0
32 TraesCS2B01G156200 chr6B 98.413 504 8 0 1287 1790 678123092 678122589 0.000000e+00 887.0
33 TraesCS2B01G156200 chr6B 93.530 541 28 6 1 540 42473926 42474460 0.000000e+00 798.0
34 TraesCS2B01G156200 chr6B 93.401 394 22 2 526 919 42474409 42474798 1.320000e-161 580.0
35 TraesCS2B01G156200 chr6B 96.498 257 8 1 6172 6428 171210350 171210095 2.360000e-114 424.0
36 TraesCS2B01G156200 chr3B 98.569 1887 8 1 2494 4361 733420970 733419084 0.000000e+00 3317.0
37 TraesCS2B01G156200 chr3B 98.673 829 10 1 1624 2451 733424447 733423619 0.000000e+00 1469.0
38 TraesCS2B01G156200 chr3B 96.118 644 24 1 6426 7068 478014926 478015569 0.000000e+00 1050.0
39 TraesCS2B01G156200 chr3B 95.370 648 26 4 6422 7067 29845350 29845995 0.000000e+00 1027.0
40 TraesCS2B01G156200 chr3B 95.164 641 29 2 6428 7068 191186099 191185461 0.000000e+00 1011.0
41 TraesCS2B01G156200 chr3B 98.204 501 9 0 1290 1790 733424817 733424317 0.000000e+00 876.0
42 TraesCS2B01G156200 chr3B 89.173 665 48 9 6426 7068 41334262 41333600 0.000000e+00 808.0
43 TraesCS2B01G156200 chr3B 88.645 502 36 3 1289 1790 438118682 438118202 6.110000e-165 592.0
44 TraesCS2B01G156200 chr3B 84.066 546 73 13 1 540 772409944 772409407 1.360000e-141 514.0
45 TraesCS2B01G156200 chr3B 99.107 112 1 0 3041 3152 528697049 528696938 1.200000e-47 202.0
46 TraesCS2B01G156200 chr2D 95.178 954 38 5 5225 6170 79384892 79385845 0.000000e+00 1500.0
47 TraesCS2B01G156200 chr2D 94.459 379 16 4 911 1289 79383878 79384251 4.750000e-161 579.0
48 TraesCS2B01G156200 chr2D 94.026 385 17 4 4348 4727 79384254 79384637 4.750000e-161 579.0
49 TraesCS2B01G156200 chr2D 90.850 306 27 1 4046 4351 11343595 11343291 6.600000e-110 409.0
50 TraesCS2B01G156200 chr2D 93.023 258 15 2 6171 6428 649301387 649301133 2.410000e-99 374.0
51 TraesCS2B01G156200 chr2D 86.833 281 33 2 1009 1286 74982272 74982551 1.910000e-80 311.0
52 TraesCS2B01G156200 chr2D 84.228 298 32 9 4725 5011 79384596 79384889 6.980000e-70 276.0
53 TraesCS2B01G156200 chr2D 86.471 170 18 5 5116 5282 8606303 8606136 1.570000e-41 182.0
54 TraesCS2B01G156200 chr2D 92.063 126 5 5 6304 6428 68567955 68568076 9.430000e-39 172.0
55 TraesCS2B01G156200 chr2D 91.270 126 5 6 6304 6428 68591576 68591696 4.390000e-37 167.0
56 TraesCS2B01G156200 chr2D 82.292 96 10 3 6337 6425 79378413 79378508 7.600000e-10 76.8
57 TraesCS2B01G156200 chr4A 96.429 644 22 1 6426 7068 741491742 741492385 0.000000e+00 1061.0
58 TraesCS2B01G156200 chr4A 97.822 597 12 1 6428 7023 729776806 729777402 0.000000e+00 1029.0
59 TraesCS2B01G156200 chr4A 94.270 541 28 3 1 540 475901991 475901453 0.000000e+00 824.0
60 TraesCS2B01G156200 chr4A 92.911 395 24 2 526 920 475901504 475901114 7.950000e-159 571.0
61 TraesCS2B01G156200 chr4A 89.313 262 20 6 6171 6428 603723011 603723268 8.840000e-84 322.0
62 TraesCS2B01G156200 chr5B 94.419 645 32 4 6426 7068 531740661 531741303 0.000000e+00 989.0
63 TraesCS2B01G156200 chr5B 86.391 676 60 13 6422 7068 546986361 546985689 0.000000e+00 710.0
64 TraesCS2B01G156200 chr5B 87.798 336 32 6 2118 2451 555952832 555952504 1.110000e-102 385.0
65 TraesCS2B01G156200 chr5B 77.322 366 57 16 4902 5264 272672434 272672092 7.240000e-45 193.0
66 TraesCS2B01G156200 chr5B 93.162 117 8 0 2005 2121 555953129 555953013 9.430000e-39 172.0
67 TraesCS2B01G156200 chrUn 99.806 516 1 0 1936 2451 409769209 409768694 0.000000e+00 948.0
68 TraesCS2B01G156200 chrUn 89.098 266 19 7 6170 6428 461900900 461900638 8.840000e-84 322.0
69 TraesCS2B01G156200 chrUn 88.889 261 16 5 3697 3944 264523523 264523263 6.890000e-80 309.0
70 TraesCS2B01G156200 chrUn 85.714 189 25 2 5096 5282 87042190 87042378 1.560000e-46 198.0
71 TraesCS2B01G156200 chrUn 84.444 180 25 3 5097 5274 25042300 25042122 2.620000e-39 174.0
72 TraesCS2B01G156200 chr6A 94.455 541 27 3 1 540 466658147 466658685 0.000000e+00 830.0
73 TraesCS2B01G156200 chr6A 93.738 543 29 4 1 540 574252776 574252236 0.000000e+00 809.0
74 TraesCS2B01G156200 chr6A 93.434 396 22 2 526 921 466658634 466659025 1.020000e-162 584.0
75 TraesCS2B01G156200 chr6A 92.640 394 26 2 526 919 574252287 574251897 1.330000e-156 564.0
76 TraesCS2B01G156200 chr7B 94.085 541 29 3 1 540 730110012 730110550 0.000000e+00 819.0
77 TraesCS2B01G156200 chr7B 94.024 502 26 2 1289 1787 610505695 610506195 0.000000e+00 758.0
78 TraesCS2B01G156200 chr7B 93.384 393 23 2 526 918 138611947 138611558 4.750000e-161 579.0
79 TraesCS2B01G156200 chr7B 93.147 394 23 2 527 920 730110500 730110889 6.150000e-160 575.0
80 TraesCS2B01G156200 chr7B 90.494 263 18 7 6170 6428 726375915 726376174 2.440000e-89 340.0
81 TraesCS2B01G156200 chr7B 89.773 264 19 7 6170 6428 726372417 726372677 1.470000e-86 331.0
82 TraesCS2B01G156200 chr7B 89.695 262 21 6 6170 6428 726381123 726381381 5.290000e-86 329.0
83 TraesCS2B01G156200 chr7B 84.783 184 24 4 5101 5282 230338267 230338448 1.570000e-41 182.0
84 TraesCS2B01G156200 chr4B 93.715 541 30 4 1 540 3760970 3760433 0.000000e+00 808.0
85 TraesCS2B01G156200 chr4B 91.456 515 18 7 2472 2973 338333290 338332789 0.000000e+00 684.0
86 TraesCS2B01G156200 chr4B 88.911 514 40 5 1293 1790 338362892 338362380 1.010000e-172 617.0
87 TraesCS2B01G156200 chr4B 94.458 397 19 2 526 922 3760484 3760091 6.060000e-170 608.0
88 TraesCS2B01G156200 chr4B 84.432 546 72 12 1 540 91133170 91133708 6.280000e-145 525.0
89 TraesCS2B01G156200 chr7A 87.275 668 53 12 6428 7068 668039679 668039017 0.000000e+00 734.0
90 TraesCS2B01G156200 chr7A 88.235 136 13 3 4904 5036 329393307 329393442 7.340000e-35 159.0
91 TraesCS2B01G156200 chr3D 90.546 476 19 12 2450 2911 562671739 562671276 2.180000e-169 606.0
92 TraesCS2B01G156200 chr3D 88.312 154 17 1 5101 5253 504378043 504378196 4.350000e-42 183.0
93 TraesCS2B01G156200 chr1D 93.401 394 23 2 526 919 75663790 75663400 1.320000e-161 580.0
94 TraesCS2B01G156200 chr1D 95.385 65 3 0 3571 3635 365065704 365065768 3.490000e-18 104.0
95 TraesCS2B01G156200 chr1D 83.529 85 4 2 4726 4800 436214100 436214016 3.540000e-08 71.3
96 TraesCS2B01G156200 chr5D 94.306 281 14 1 3183 3463 565042495 565042217 5.070000e-116 429.0
97 TraesCS2B01G156200 chr5D 87.353 340 32 5 2116 2451 454311317 454310985 5.170000e-101 379.0
98 TraesCS2B01G156200 chr5D 92.248 258 17 3 6171 6428 536798072 536798326 5.210000e-96 363.0
99 TraesCS2B01G156200 chr5D 77.236 369 50 20 4902 5264 232414626 232414966 1.210000e-42 185.0
100 TraesCS2B01G156200 chr5D 83.854 192 28 3 5081 5269 80451749 80451940 5.630000e-41 180.0
101 TraesCS2B01G156200 chr5D 87.681 138 8 5 4904 5038 537750438 537750307 1.230000e-32 152.0
102 TraesCS2B01G156200 chr5D 100.000 30 0 0 4726 4755 420933970 420933999 1.000000e-03 56.5
103 TraesCS2B01G156200 chr2A 92.248 258 18 2 6171 6428 25471203 25471458 1.450000e-96 364.0
104 TraesCS2B01G156200 chr2A 85.915 284 36 2 1006 1286 74165060 74165342 4.140000e-77 300.0
105 TraesCS2B01G156200 chr2A 85.789 190 22 5 5096 5282 543624091 543623904 5.590000e-46 196.0
106 TraesCS2B01G156200 chr3A 86.594 276 16 6 6171 6428 265171845 265171573 1.160000e-72 285.0
107 TraesCS2B01G156200 chr3A 82.609 253 31 6 6185 6428 639628914 639628666 2.000000e-50 211.0
108 TraesCS2B01G156200 chr4D 84.411 263 16 8 6168 6428 120834680 120834919 1.190000e-57 235.0
109 TraesCS2B01G156200 chr7D 81.818 143 19 4 6288 6428 15366176 15366039 5.790000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G156200 chr2B 128373212 128380279 7067 False 13053.000000 13053 100.000000 1 7068 1 chr2B.!!$F1 7067
1 TraesCS2B01G156200 chr2B 98592509 98598370 5861 True 2145.500000 3469 99.789500 1287 4351 2 chr2B.!!$R2 3064
2 TraesCS2B01G156200 chr2B 612086505 612092259 5754 False 1901.000000 2981 99.408000 1287 4354 2 chr2B.!!$F5 3067
3 TraesCS2B01G156200 chr2B 569150474 569154874 4400 False 1115.333333 1796 93.293667 1451 4351 3 chr2B.!!$F4 2900
4 TraesCS2B01G156200 chr2B 733877947 733878591 644 True 989.000000 989 94.419000 6428 7068 1 chr2B.!!$R1 640
5 TraesCS2B01G156200 chr2B 776404944 776405599 655 False 905.000000 905 91.921000 6426 7068 1 chr2B.!!$F3 642
6 TraesCS2B01G156200 chr2B 158635197 158635844 647 False 894.000000 894 91.859000 6428 7065 1 chr2B.!!$F2 637
7 TraesCS2B01G156200 chr2B 756026331 756029490 3159 False 537.000000 586 89.151000 1461 2911 2 chr2B.!!$F6 1450
8 TraesCS2B01G156200 chr1B 439122706 439125924 3218 False 2047.000000 3476 98.943667 1290 4352 3 chr1B.!!$F3 3062
9 TraesCS2B01G156200 chr1B 355681468 355682344 876 False 697.000000 819 93.616000 1 919 2 chr1B.!!$F2 918
10 TraesCS2B01G156200 chr1A 543482746 543485964 3218 False 2046.333333 3474 98.943333 1290 4351 3 chr1A.!!$F3 3061
11 TraesCS2B01G156200 chr5A 365331464 365334689 3225 False 2036.666667 3450 98.726667 1287 4351 3 chr5A.!!$F2 3064
12 TraesCS2B01G156200 chr5A 573608100 573608761 661 True 300.500000 429 91.464000 2005 2451 2 chr5A.!!$R1 446
13 TraesCS2B01G156200 chr6B 678119871 678123092 3221 True 2039.333333 3441 98.845667 1287 4351 3 chr6B.!!$R2 3064
14 TraesCS2B01G156200 chr6B 42473926 42474798 872 False 689.000000 798 93.465500 1 919 2 chr6B.!!$F1 918
15 TraesCS2B01G156200 chr3B 733419084 733424817 5733 True 1887.333333 3317 98.482000 1290 4361 3 chr3B.!!$R6 3071
16 TraesCS2B01G156200 chr3B 478014926 478015569 643 False 1050.000000 1050 96.118000 6426 7068 1 chr3B.!!$F2 642
17 TraesCS2B01G156200 chr3B 29845350 29845995 645 False 1027.000000 1027 95.370000 6422 7067 1 chr3B.!!$F1 645
18 TraesCS2B01G156200 chr3B 191185461 191186099 638 True 1011.000000 1011 95.164000 6428 7068 1 chr3B.!!$R2 640
19 TraesCS2B01G156200 chr3B 41333600 41334262 662 True 808.000000 808 89.173000 6426 7068 1 chr3B.!!$R1 642
20 TraesCS2B01G156200 chr3B 772409407 772409944 537 True 514.000000 514 84.066000 1 540 1 chr3B.!!$R5 539
21 TraesCS2B01G156200 chr2D 79383878 79385845 1967 False 733.500000 1500 91.972750 911 6170 4 chr2D.!!$F5 5259
22 TraesCS2B01G156200 chr4A 741491742 741492385 643 False 1061.000000 1061 96.429000 6426 7068 1 chr4A.!!$F3 642
23 TraesCS2B01G156200 chr4A 729776806 729777402 596 False 1029.000000 1029 97.822000 6428 7023 1 chr4A.!!$F2 595
24 TraesCS2B01G156200 chr4A 475901114 475901991 877 True 697.500000 824 93.590500 1 920 2 chr4A.!!$R1 919
25 TraesCS2B01G156200 chr5B 531740661 531741303 642 False 989.000000 989 94.419000 6426 7068 1 chr5B.!!$F1 642
26 TraesCS2B01G156200 chr5B 546985689 546986361 672 True 710.000000 710 86.391000 6422 7068 1 chr5B.!!$R2 646
27 TraesCS2B01G156200 chr5B 555952504 555953129 625 True 278.500000 385 90.480000 2005 2451 2 chr5B.!!$R3 446
28 TraesCS2B01G156200 chrUn 409768694 409769209 515 True 948.000000 948 99.806000 1936 2451 1 chrUn.!!$R3 515
29 TraesCS2B01G156200 chr6A 466658147 466659025 878 False 707.000000 830 93.944500 1 921 2 chr6A.!!$F1 920
30 TraesCS2B01G156200 chr6A 574251897 574252776 879 True 686.500000 809 93.189000 1 919 2 chr6A.!!$R1 918
31 TraesCS2B01G156200 chr7B 610505695 610506195 500 False 758.000000 758 94.024000 1289 1787 1 chr7B.!!$F2 498
32 TraesCS2B01G156200 chr7B 730110012 730110889 877 False 697.000000 819 93.616000 1 920 2 chr7B.!!$F5 919
33 TraesCS2B01G156200 chr7B 726372417 726376174 3757 False 335.500000 340 90.133500 6170 6428 2 chr7B.!!$F4 258
34 TraesCS2B01G156200 chr4B 3760091 3760970 879 True 708.000000 808 94.086500 1 922 2 chr4B.!!$R3 921
35 TraesCS2B01G156200 chr4B 338332789 338333290 501 True 684.000000 684 91.456000 2472 2973 1 chr4B.!!$R1 501
36 TraesCS2B01G156200 chr4B 338362380 338362892 512 True 617.000000 617 88.911000 1293 1790 1 chr4B.!!$R2 497
37 TraesCS2B01G156200 chr4B 91133170 91133708 538 False 525.000000 525 84.432000 1 540 1 chr4B.!!$F1 539
38 TraesCS2B01G156200 chr7A 668039017 668039679 662 True 734.000000 734 87.275000 6428 7068 1 chr7A.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 527 0.109597 CGGCAACAAGAACTGCATCC 60.110 55.0 0.0 0.0 40.46 3.51 F
810 817 0.173481 CGTGCGAAGAGGATGAAGGA 59.827 55.0 0.0 0.0 0.00 3.36 F
930 937 0.870307 CGTCGCCCTAGTCAAATCGG 60.870 60.0 0.0 0.0 0.00 4.18 F
4740 8174 0.031111 AGGCTACTACCTCCATGCCA 60.031 55.0 0.0 0.0 42.46 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4449 7879 2.711009 TGACCTCCACTGAGAATTGGTT 59.289 45.455 0.00 0.0 41.42 3.67 R
4561 7991 1.100510 TTGTAGTCGACCTCATCCCG 58.899 55.000 13.01 0.0 0.00 5.14 R
4830 8264 1.067974 CACACGGTGGACTTACAGTGA 59.932 52.381 13.48 0.0 45.57 3.41 R
6303 13252 0.110056 GTGCGCCAGTTTGTCTGATG 60.110 55.000 4.18 0.0 46.27 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 3.857093 GCATAACATTTTGCTACAACCGG 59.143 43.478 0.00 0.00 35.95 5.28
138 140 1.919918 ACAACCGTCGTCACGTTTTA 58.080 45.000 0.00 0.00 45.17 1.52
145 147 3.670055 CCGTCGTCACGTTTTACTACAAT 59.330 43.478 0.00 0.00 45.17 2.71
157 159 4.940905 TTACTACAATACATAGCCGGCA 57.059 40.909 31.54 15.56 0.00 5.69
229 232 1.450134 GCTGCATCCATCACGACCA 60.450 57.895 0.00 0.00 0.00 4.02
310 315 1.018148 AACCGACATCACGTTTTGCA 58.982 45.000 0.00 0.00 0.00 4.08
372 377 1.080093 CGACGAGCTACAAAGGGCA 60.080 57.895 0.00 0.00 0.00 5.36
379 384 0.947180 GCTACAAAGGGCAACGACGA 60.947 55.000 0.00 0.00 37.60 4.20
392 399 3.427528 GCAACGACGATGACAGACTTTTA 59.572 43.478 9.52 0.00 0.00 1.52
411 418 1.609208 ATGCTGCAACCGTTTTCTCT 58.391 45.000 6.36 0.00 0.00 3.10
444 451 2.159338 CCGTGCAATAGAAAGCTGCAAT 60.159 45.455 1.02 0.00 46.91 3.56
497 504 3.150895 CAGACGTCGAGCTGCAAC 58.849 61.111 10.46 0.00 0.00 4.17
498 505 2.049063 AGACGTCGAGCTGCAACC 60.049 61.111 10.46 0.00 0.00 3.77
499 506 3.470567 GACGTCGAGCTGCAACCG 61.471 66.667 0.00 2.46 0.00 4.44
510 517 4.999939 GCAACCGGCGGCAACAAG 63.000 66.667 28.71 10.61 0.00 3.16
511 518 3.283684 CAACCGGCGGCAACAAGA 61.284 61.111 28.71 0.00 0.00 3.02
512 519 2.517402 AACCGGCGGCAACAAGAA 60.517 55.556 28.71 0.00 0.00 2.52
513 520 2.841160 AACCGGCGGCAACAAGAAC 61.841 57.895 28.71 0.00 0.00 3.01
514 521 2.978010 CCGGCGGCAACAAGAACT 60.978 61.111 15.42 0.00 0.00 3.01
515 522 2.252260 CGGCGGCAACAAGAACTG 59.748 61.111 10.53 0.00 0.00 3.16
516 523 2.050077 GGCGGCAACAAGAACTGC 60.050 61.111 3.07 0.00 37.86 4.40
517 524 2.721231 GCGGCAACAAGAACTGCA 59.279 55.556 0.00 0.00 40.46 4.41
518 525 1.286880 GCGGCAACAAGAACTGCAT 59.713 52.632 0.00 0.00 40.46 3.96
519 526 0.730494 GCGGCAACAAGAACTGCATC 60.730 55.000 0.00 0.00 40.46 3.91
520 527 0.109597 CGGCAACAAGAACTGCATCC 60.110 55.000 0.00 0.00 40.46 3.51
521 528 0.961019 GGCAACAAGAACTGCATCCA 59.039 50.000 0.00 0.00 40.46 3.41
522 529 1.068055 GGCAACAAGAACTGCATCCAG 60.068 52.381 0.00 0.00 44.80 3.86
523 530 1.668047 GCAACAAGAACTGCATCCAGC 60.668 52.381 0.00 0.00 43.02 4.85
724 731 4.475135 GGCGGAGAGAGGGGTTGC 62.475 72.222 0.00 0.00 0.00 4.17
743 750 2.844839 GATGAGGGGGTAGCGGCT 60.845 66.667 7.98 7.98 0.00 5.52
745 752 3.696518 ATGAGGGGGTAGCGGCTGA 62.697 63.158 13.86 0.00 0.00 4.26
809 816 1.424493 GCGTGCGAAGAGGATGAAGG 61.424 60.000 0.00 0.00 0.00 3.46
810 817 0.173481 CGTGCGAAGAGGATGAAGGA 59.827 55.000 0.00 0.00 0.00 3.36
817 824 3.951037 CGAAGAGGATGAAGGAGAGAGAA 59.049 47.826 0.00 0.00 0.00 2.87
843 850 4.796231 ACGCACAGATCGGACGGC 62.796 66.667 14.60 7.94 0.00 5.68
930 937 0.870307 CGTCGCCCTAGTCAAATCGG 60.870 60.000 0.00 0.00 0.00 4.18
938 945 2.936498 CCTAGTCAAATCGGCGAACAAT 59.064 45.455 15.93 0.00 0.00 2.71
954 961 1.274167 ACAATTTACACTCCTCGGCGA 59.726 47.619 10.14 10.14 0.00 5.54
955 962 1.927174 CAATTTACACTCCTCGGCGAG 59.073 52.381 29.16 29.16 35.88 5.03
981 988 3.453070 GATGGCTGAGACGGAGGCC 62.453 68.421 0.00 0.00 44.31 5.19
1001 1008 2.229062 CCTACACGACAGAGTCACACAT 59.771 50.000 0.00 0.00 32.09 3.21
1028 1035 3.124921 GGATGCGGACACAACGGG 61.125 66.667 0.00 0.00 0.00 5.28
1035 1042 1.448497 GGACACAACGGGGTCAGAA 59.552 57.895 0.00 0.00 35.74 3.02
1037 1044 0.942252 GACACAACGGGGTCAGAAAC 59.058 55.000 0.00 0.00 34.22 2.78
1065 1072 4.338539 ACGACGGACACGGACAGC 62.339 66.667 0.00 0.00 46.48 4.40
1203 1210 3.982829 GACCCCAAGTCGAAAGCC 58.017 61.111 0.00 0.00 35.30 4.35
1245 1252 3.350833 CAGCTTCAACATAGCCCTCTTT 58.649 45.455 0.00 0.00 39.47 2.52
1260 1267 2.414824 CCTCTTTGACCTCGACGAAGAG 60.415 54.545 18.31 18.31 46.82 2.85
1268 1275 2.074576 CCTCGACGAAGAGTGTCAGTA 58.925 52.381 0.00 0.00 36.56 2.74
1270 1277 3.486043 CCTCGACGAAGAGTGTCAGTATG 60.486 52.174 0.00 0.00 36.56 2.39
1271 1278 2.159558 TCGACGAAGAGTGTCAGTATGC 60.160 50.000 0.00 0.00 36.11 3.14
1272 1279 2.159503 CGACGAAGAGTGTCAGTATGCT 60.160 50.000 0.00 0.00 36.11 3.79
1273 1280 3.063588 CGACGAAGAGTGTCAGTATGCTA 59.936 47.826 0.00 0.00 36.11 3.49
4401 7831 3.988379 TGTTCGCTTCTGATTTGCTTT 57.012 38.095 0.00 0.00 0.00 3.51
4474 7904 4.397417 CCAATTCTCAGTGGAGGTCAATTC 59.603 45.833 0.00 0.00 40.98 2.17
4557 7987 6.183360 CGATCAATGTCTTTGGTACTGTTCTC 60.183 42.308 0.00 0.00 35.92 2.87
4561 7991 2.475487 GTCTTTGGTACTGTTCTCGCAC 59.525 50.000 0.00 0.00 0.00 5.34
4581 8011 1.475280 CGGGATGAGGTCGACTACAAA 59.525 52.381 16.46 0.00 0.00 2.83
4641 8071 0.396695 ACATCGAGTCCCCGGTATGT 60.397 55.000 0.00 0.00 0.00 2.29
4649 8079 3.381335 AGTCCCCGGTATGTATCTGTTT 58.619 45.455 0.00 0.00 0.00 2.83
4650 8080 4.549668 AGTCCCCGGTATGTATCTGTTTA 58.450 43.478 0.00 0.00 0.00 2.01
4652 8082 5.605488 AGTCCCCGGTATGTATCTGTTTATT 59.395 40.000 0.00 0.00 0.00 1.40
4653 8083 6.783977 AGTCCCCGGTATGTATCTGTTTATTA 59.216 38.462 0.00 0.00 0.00 0.98
4654 8084 6.870439 GTCCCCGGTATGTATCTGTTTATTAC 59.130 42.308 0.00 0.00 0.00 1.89
4655 8085 6.783977 TCCCCGGTATGTATCTGTTTATTACT 59.216 38.462 0.00 0.00 0.00 2.24
4657 8087 7.095270 CCCGGTATGTATCTGTTTATTACTCC 58.905 42.308 0.00 0.00 0.00 3.85
4658 8088 7.256048 CCCGGTATGTATCTGTTTATTACTCCA 60.256 40.741 0.00 0.00 0.00 3.86
4659 8089 8.311836 CCGGTATGTATCTGTTTATTACTCCAT 58.688 37.037 0.00 0.00 0.00 3.41
4660 8090 9.355215 CGGTATGTATCTGTTTATTACTCCATC 57.645 37.037 0.00 0.00 0.00 3.51
4665 8095 9.817809 TGTATCTGTTTATTACTCCATCAACTC 57.182 33.333 0.00 0.00 0.00 3.01
4668 8098 7.556844 TCTGTTTATTACTCCATCAACTCTCC 58.443 38.462 0.00 0.00 0.00 3.71
4669 8099 7.400339 TCTGTTTATTACTCCATCAACTCTCCT 59.600 37.037 0.00 0.00 0.00 3.69
4670 8100 8.603898 TGTTTATTACTCCATCAACTCTCCTA 57.396 34.615 0.00 0.00 0.00 2.94
4671 8101 8.696374 TGTTTATTACTCCATCAACTCTCCTAG 58.304 37.037 0.00 0.00 0.00 3.02
4700 8134 6.614694 TTTTCTTACTACTACCTCCATGCA 57.385 37.500 0.00 0.00 0.00 3.96
4718 8152 9.729023 CTCCATGCAAAAATATATGACGTTTTA 57.271 29.630 0.00 0.00 0.00 1.52
4739 8173 1.619332 GTAGGCTACTACCTCCATGCC 59.381 57.143 17.35 0.00 43.04 4.40
4740 8174 0.031111 AGGCTACTACCTCCATGCCA 60.031 55.000 0.00 0.00 42.46 4.92
4741 8175 0.837272 GGCTACTACCTCCATGCCAA 59.163 55.000 0.00 0.00 40.04 4.52
4742 8176 1.211949 GGCTACTACCTCCATGCCAAA 59.788 52.381 0.00 0.00 40.04 3.28
4743 8177 2.356741 GGCTACTACCTCCATGCCAAAA 60.357 50.000 0.00 0.00 40.04 2.44
4744 8178 3.555966 GCTACTACCTCCATGCCAAAAT 58.444 45.455 0.00 0.00 0.00 1.82
4745 8179 4.445735 GGCTACTACCTCCATGCCAAAATA 60.446 45.833 0.00 0.00 40.04 1.40
4746 8180 5.316987 GCTACTACCTCCATGCCAAAATAT 58.683 41.667 0.00 0.00 0.00 1.28
4747 8181 6.472887 GCTACTACCTCCATGCCAAAATATA 58.527 40.000 0.00 0.00 0.00 0.86
4748 8182 7.112779 GCTACTACCTCCATGCCAAAATATAT 58.887 38.462 0.00 0.00 0.00 0.86
4749 8183 7.066284 GCTACTACCTCCATGCCAAAATATATG 59.934 40.741 0.00 0.00 0.00 1.78
4750 8184 7.090319 ACTACCTCCATGCCAAAATATATGA 57.910 36.000 0.00 0.00 0.00 2.15
4751 8185 6.942576 ACTACCTCCATGCCAAAATATATGAC 59.057 38.462 0.00 0.00 0.00 3.06
4752 8186 4.761739 ACCTCCATGCCAAAATATATGACG 59.238 41.667 0.00 0.00 0.00 4.35
4753 8187 4.761739 CCTCCATGCCAAAATATATGACGT 59.238 41.667 0.00 0.00 0.00 4.34
4754 8188 5.241506 CCTCCATGCCAAAATATATGACGTT 59.758 40.000 0.00 0.00 0.00 3.99
4755 8189 6.312399 TCCATGCCAAAATATATGACGTTC 57.688 37.500 0.00 0.00 0.00 3.95
4756 8190 6.061441 TCCATGCCAAAATATATGACGTTCT 58.939 36.000 0.00 0.00 0.00 3.01
4757 8191 7.220740 TCCATGCCAAAATATATGACGTTCTA 58.779 34.615 0.00 0.00 0.00 2.10
4758 8192 7.717436 TCCATGCCAAAATATATGACGTTCTAA 59.283 33.333 0.00 0.00 0.00 2.10
4759 8193 8.514594 CCATGCCAAAATATATGACGTTCTAAT 58.485 33.333 0.00 0.00 0.00 1.73
4762 8196 8.717821 TGCCAAAATATATGACGTTCTAATAGC 58.282 33.333 0.00 0.00 0.00 2.97
4763 8197 8.175716 GCCAAAATATATGACGTTCTAATAGCC 58.824 37.037 0.00 0.00 0.00 3.93
4764 8198 9.436957 CCAAAATATATGACGTTCTAATAGCCT 57.563 33.333 0.00 0.00 0.00 4.58
4766 8200 9.654663 AAAATATATGACGTTCTAATAGCCTCC 57.345 33.333 0.00 0.00 0.00 4.30
4767 8201 5.662674 ATATGACGTTCTAATAGCCTCCC 57.337 43.478 0.00 0.00 0.00 4.30
4771 8205 4.020039 TGACGTTCTAATAGCCTCCCAAAA 60.020 41.667 0.00 0.00 0.00 2.44
4785 8219 7.057894 AGCCTCCCAAAACGTCATATATTTTA 58.942 34.615 0.00 0.00 0.00 1.52
4790 8224 6.631238 CCCAAAACGTCATATATTTTAGCACG 59.369 38.462 0.00 0.00 0.00 5.34
4807 8241 4.080687 AGCACGGAGGTAGTAGATTATCC 58.919 47.826 0.00 0.00 0.00 2.59
4812 8246 5.071370 CGGAGGTAGTAGATTATCCACAGT 58.929 45.833 0.00 0.00 0.00 3.55
4834 8268 8.668510 CAGTATGTATAAATTGAGCCTTCACT 57.331 34.615 0.00 0.00 31.71 3.41
4835 8269 8.554528 CAGTATGTATAAATTGAGCCTTCACTG 58.445 37.037 0.00 0.00 31.71 3.66
4886 8330 5.189145 CCCAGTATTAGGAAGTTGTACCACT 59.811 44.000 0.00 0.00 0.00 4.00
4887 8331 6.106673 CCAGTATTAGGAAGTTGTACCACTG 58.893 44.000 0.00 0.00 0.00 3.66
4889 8333 7.093640 CCAGTATTAGGAAGTTGTACCACTGTA 60.094 40.741 0.00 0.00 29.99 2.74
4890 8334 7.758528 CAGTATTAGGAAGTTGTACCACTGTAC 59.241 40.741 0.00 0.00 46.22 2.90
4891 8335 5.473066 TTAGGAAGTTGTACCACTGTACC 57.527 43.478 0.00 5.46 45.59 3.34
4892 8336 2.636403 AGGAAGTTGTACCACTGTACCC 59.364 50.000 0.00 1.06 45.59 3.69
4893 8337 2.636403 GGAAGTTGTACCACTGTACCCT 59.364 50.000 0.00 0.00 45.59 4.34
4894 8338 3.556423 GGAAGTTGTACCACTGTACCCTG 60.556 52.174 0.00 0.00 45.59 4.45
4913 8357 5.046231 ACCCTGTAGACCAGAAATTTCTCTC 60.046 44.000 17.91 14.41 44.49 3.20
4920 8364 7.269477 AGACCAGAAATTTCTCTCTTTTGTG 57.731 36.000 17.91 4.70 34.74 3.33
4950 8394 7.978975 CCAAACAAGAGAACATTTGACCTTAAA 59.021 33.333 0.00 0.00 34.62 1.52
4982 8426 4.315803 GTCAAGTATACACAAGTGCCACT 58.684 43.478 5.50 0.00 0.00 4.00
4983 8427 4.389077 GTCAAGTATACACAAGTGCCACTC 59.611 45.833 5.50 0.00 0.00 3.51
4986 8430 5.932619 AGTATACACAAGTGCCACTCATA 57.067 39.130 5.50 0.00 0.00 2.15
4997 8441 7.829211 ACAAGTGCCACTCATAGTATAAAATGT 59.171 33.333 0.00 0.00 0.00 2.71
5001 8445 8.129211 GTGCCACTCATAGTATAAAATGTTTCC 58.871 37.037 0.00 0.00 0.00 3.13
5003 8447 7.012044 GCCACTCATAGTATAAAATGTTTCCGT 59.988 37.037 0.00 0.00 0.00 4.69
5036 8480 9.658799 TGGAACATAAATTTGTCAAAGTTCAAA 57.341 25.926 13.84 6.22 36.69 2.69
5065 8509 8.615211 TGTTCTATCATGATAAATCTGTGTTGC 58.385 33.333 16.08 1.50 0.00 4.17
5066 8510 7.412137 TCTATCATGATAAATCTGTGTTGCG 57.588 36.000 16.08 0.92 0.00 4.85
5067 8511 4.277257 TCATGATAAATCTGTGTTGCGC 57.723 40.909 0.00 0.00 0.00 6.09
5068 8512 3.065233 TCATGATAAATCTGTGTTGCGCC 59.935 43.478 4.18 0.00 0.00 6.53
5069 8513 2.710377 TGATAAATCTGTGTTGCGCCT 58.290 42.857 4.18 0.00 0.00 5.52
5070 8514 3.867857 TGATAAATCTGTGTTGCGCCTA 58.132 40.909 4.18 0.00 0.00 3.93
5071 8515 4.257731 TGATAAATCTGTGTTGCGCCTAA 58.742 39.130 4.18 0.00 0.00 2.69
5072 8516 4.697828 TGATAAATCTGTGTTGCGCCTAAA 59.302 37.500 4.18 0.00 0.00 1.85
5073 8517 5.182190 TGATAAATCTGTGTTGCGCCTAAAA 59.818 36.000 4.18 0.00 0.00 1.52
5074 8518 4.314740 AAATCTGTGTTGCGCCTAAAAA 57.685 36.364 4.18 0.00 0.00 1.94
5075 8519 4.519540 AATCTGTGTTGCGCCTAAAAAT 57.480 36.364 4.18 0.00 0.00 1.82
5076 8520 3.552604 TCTGTGTTGCGCCTAAAAATC 57.447 42.857 4.18 0.00 0.00 2.17
5077 8521 2.095969 TCTGTGTTGCGCCTAAAAATCG 60.096 45.455 4.18 0.00 0.00 3.34
5078 8522 1.604755 TGTGTTGCGCCTAAAAATCGT 59.395 42.857 4.18 0.00 0.00 3.73
5079 8523 2.033550 TGTGTTGCGCCTAAAAATCGTT 59.966 40.909 4.18 0.00 0.00 3.85
5080 8524 3.047093 GTGTTGCGCCTAAAAATCGTTT 58.953 40.909 4.18 0.00 0.00 3.60
5081 8525 3.487942 GTGTTGCGCCTAAAAATCGTTTT 59.512 39.130 4.18 0.00 40.15 2.43
5082 8526 4.026393 GTGTTGCGCCTAAAAATCGTTTTT 60.026 37.500 4.18 11.37 44.43 1.94
5083 8527 5.173492 GTGTTGCGCCTAAAAATCGTTTTTA 59.827 36.000 4.18 9.21 42.43 1.52
5084 8528 5.747197 TGTTGCGCCTAAAAATCGTTTTTAA 59.253 32.000 4.18 0.00 42.58 1.52
5085 8529 6.255020 TGTTGCGCCTAAAAATCGTTTTTAAA 59.745 30.769 4.18 0.00 42.58 1.52
5086 8530 6.823678 TGCGCCTAAAAATCGTTTTTAAAA 57.176 29.167 4.18 0.00 42.58 1.52
5087 8531 7.230466 TGCGCCTAAAAATCGTTTTTAAAAA 57.770 28.000 9.31 9.31 42.58 1.94
5088 8532 7.118088 TGCGCCTAAAAATCGTTTTTAAAAAC 58.882 30.769 26.83 26.83 42.58 2.43
5089 8533 6.570789 GCGCCTAAAAATCGTTTTTAAAAACC 59.429 34.615 29.13 16.49 44.05 3.27
5090 8534 7.517101 GCGCCTAAAAATCGTTTTTAAAAACCT 60.517 33.333 29.13 18.37 44.05 3.50
5091 8535 8.966194 CGCCTAAAAATCGTTTTTAAAAACCTA 58.034 29.630 29.13 21.00 44.05 3.08
5098 8542 8.845942 AATCGTTTTTAAAAACCTATATCGCC 57.154 30.769 29.13 8.73 44.05 5.54
5099 8543 7.614124 TCGTTTTTAAAAACCTATATCGCCT 57.386 32.000 29.13 0.00 44.05 5.52
5100 8544 8.715191 TCGTTTTTAAAAACCTATATCGCCTA 57.285 30.769 29.13 6.01 44.05 3.93
5101 8545 9.160496 TCGTTTTTAAAAACCTATATCGCCTAA 57.840 29.630 29.13 5.73 44.05 2.69
5102 8546 9.771915 CGTTTTTAAAAACCTATATCGCCTAAA 57.228 29.630 29.13 0.00 44.05 1.85
5109 8553 8.974060 AAAACCTATATCGCCTAAAAATCTGA 57.026 30.769 0.00 0.00 0.00 3.27
5110 8554 8.974060 AAACCTATATCGCCTAAAAATCTGAA 57.026 30.769 0.00 0.00 0.00 3.02
5111 8555 8.974060 AACCTATATCGCCTAAAAATCTGAAA 57.026 30.769 0.00 0.00 0.00 2.69
5112 8556 8.974060 ACCTATATCGCCTAAAAATCTGAAAA 57.026 30.769 0.00 0.00 0.00 2.29
5113 8557 8.837389 ACCTATATCGCCTAAAAATCTGAAAAC 58.163 33.333 0.00 0.00 0.00 2.43
5114 8558 8.836413 CCTATATCGCCTAAAAATCTGAAAACA 58.164 33.333 0.00 0.00 0.00 2.83
5118 8562 7.867445 TCGCCTAAAAATCTGAAAACATTTC 57.133 32.000 0.00 0.00 0.00 2.17
5119 8563 7.657336 TCGCCTAAAAATCTGAAAACATTTCT 58.343 30.769 4.65 0.00 0.00 2.52
5120 8564 7.594758 TCGCCTAAAAATCTGAAAACATTTCTG 59.405 33.333 4.65 4.32 0.00 3.02
5121 8565 7.513132 GCCTAAAAATCTGAAAACATTTCTGC 58.487 34.615 4.65 0.00 0.00 4.26
5122 8566 7.171337 GCCTAAAAATCTGAAAACATTTCTGCA 59.829 33.333 4.65 0.00 0.00 4.41
5123 8567 8.490355 CCTAAAAATCTGAAAACATTTCTGCAC 58.510 33.333 4.65 0.00 0.00 4.57
5124 8568 7.846644 AAAAATCTGAAAACATTTCTGCACA 57.153 28.000 4.65 0.00 0.00 4.57
5125 8569 8.441312 AAAAATCTGAAAACATTTCTGCACAT 57.559 26.923 4.65 0.00 0.00 3.21
5126 8570 7.416154 AAATCTGAAAACATTTCTGCACATG 57.584 32.000 4.65 0.00 0.00 3.21
5127 8571 4.873817 TCTGAAAACATTTCTGCACATGG 58.126 39.130 0.00 0.00 0.00 3.66
5128 8572 4.341806 TCTGAAAACATTTCTGCACATGGT 59.658 37.500 0.00 0.00 0.00 3.55
5129 8573 5.534278 TCTGAAAACATTTCTGCACATGGTA 59.466 36.000 0.00 0.00 0.00 3.25
5130 8574 5.771469 TGAAAACATTTCTGCACATGGTAG 58.229 37.500 0.00 0.00 0.00 3.18
5131 8575 5.301551 TGAAAACATTTCTGCACATGGTAGT 59.698 36.000 0.00 0.00 0.00 2.73
5132 8576 6.488344 TGAAAACATTTCTGCACATGGTAGTA 59.512 34.615 0.00 0.00 0.00 1.82
5133 8577 5.880054 AACATTTCTGCACATGGTAGTAC 57.120 39.130 0.00 0.00 0.00 2.73
5134 8578 5.165961 ACATTTCTGCACATGGTAGTACT 57.834 39.130 0.00 0.00 0.00 2.73
5135 8579 5.560724 ACATTTCTGCACATGGTAGTACTT 58.439 37.500 0.00 0.00 0.00 2.24
5136 8580 5.412594 ACATTTCTGCACATGGTAGTACTTG 59.587 40.000 0.00 0.00 0.00 3.16
5137 8581 4.617253 TTCTGCACATGGTAGTACTTGT 57.383 40.909 0.00 0.00 0.00 3.16
5138 8582 3.925379 TCTGCACATGGTAGTACTTGTG 58.075 45.455 22.17 22.17 44.62 3.33
5139 8583 3.323691 TCTGCACATGGTAGTACTTGTGT 59.676 43.478 24.70 14.79 44.05 3.72
5140 8584 3.398406 TGCACATGGTAGTACTTGTGTG 58.602 45.455 24.70 22.20 44.05 3.82
5141 8585 3.070302 TGCACATGGTAGTACTTGTGTGA 59.930 43.478 24.70 15.75 44.05 3.58
5142 8586 4.253685 GCACATGGTAGTACTTGTGTGAT 58.746 43.478 24.70 0.00 44.05 3.06
5143 8587 4.093408 GCACATGGTAGTACTTGTGTGATG 59.907 45.833 24.70 9.91 44.05 3.07
5144 8588 5.237815 CACATGGTAGTACTTGTGTGATGT 58.762 41.667 19.95 6.92 39.97 3.06
5145 8589 5.700832 CACATGGTAGTACTTGTGTGATGTT 59.299 40.000 19.95 0.00 39.97 2.71
5146 8590 5.700832 ACATGGTAGTACTTGTGTGATGTTG 59.299 40.000 0.00 0.00 0.00 3.33
5147 8591 5.538849 TGGTAGTACTTGTGTGATGTTGA 57.461 39.130 0.00 0.00 0.00 3.18
5148 8592 6.109156 TGGTAGTACTTGTGTGATGTTGAT 57.891 37.500 0.00 0.00 0.00 2.57
5149 8593 7.234661 TGGTAGTACTTGTGTGATGTTGATA 57.765 36.000 0.00 0.00 0.00 2.15
5150 8594 7.847096 TGGTAGTACTTGTGTGATGTTGATAT 58.153 34.615 0.00 0.00 0.00 1.63
5151 8595 7.763985 TGGTAGTACTTGTGTGATGTTGATATG 59.236 37.037 0.00 0.00 0.00 1.78
5152 8596 6.668541 AGTACTTGTGTGATGTTGATATGC 57.331 37.500 0.00 0.00 0.00 3.14
5153 8597 6.172630 AGTACTTGTGTGATGTTGATATGCA 58.827 36.000 0.00 0.00 0.00 3.96
5154 8598 5.963176 ACTTGTGTGATGTTGATATGCAA 57.037 34.783 0.00 0.00 0.00 4.08
5155 8599 6.330004 ACTTGTGTGATGTTGATATGCAAA 57.670 33.333 0.00 0.00 38.44 3.68
5156 8600 6.384224 ACTTGTGTGATGTTGATATGCAAAG 58.616 36.000 0.00 0.00 38.44 2.77
5157 8601 5.963176 TGTGTGATGTTGATATGCAAAGT 57.037 34.783 0.00 0.00 38.44 2.66
5158 8602 6.330004 TGTGTGATGTTGATATGCAAAGTT 57.670 33.333 0.00 0.00 38.44 2.66
5159 8603 7.446001 TGTGTGATGTTGATATGCAAAGTTA 57.554 32.000 0.00 0.00 38.44 2.24
5160 8604 7.304735 TGTGTGATGTTGATATGCAAAGTTAC 58.695 34.615 0.00 0.00 38.44 2.50
5161 8605 6.465781 GTGTGATGTTGATATGCAAAGTTACG 59.534 38.462 0.00 0.00 38.44 3.18
5162 8606 6.370166 TGTGATGTTGATATGCAAAGTTACGA 59.630 34.615 0.00 0.00 38.44 3.43
5163 8607 7.095017 TGTGATGTTGATATGCAAAGTTACGAA 60.095 33.333 0.00 0.00 38.44 3.85
5164 8608 7.910162 GTGATGTTGATATGCAAAGTTACGAAT 59.090 33.333 0.00 0.00 38.44 3.34
5165 8609 8.458052 TGATGTTGATATGCAAAGTTACGAATT 58.542 29.630 0.00 0.00 38.44 2.17
5166 8610 8.841444 ATGTTGATATGCAAAGTTACGAATTC 57.159 30.769 0.00 0.00 38.44 2.17
5167 8611 7.811653 TGTTGATATGCAAAGTTACGAATTCA 58.188 30.769 6.22 0.00 38.44 2.57
5168 8612 8.293157 TGTTGATATGCAAAGTTACGAATTCAA 58.707 29.630 6.22 0.00 38.44 2.69
5169 8613 9.123709 GTTGATATGCAAAGTTACGAATTCAAA 57.876 29.630 6.22 0.00 38.44 2.69
5170 8614 9.853555 TTGATATGCAAAGTTACGAATTCAAAT 57.146 25.926 6.22 0.00 32.46 2.32
5171 8615 9.288124 TGATATGCAAAGTTACGAATTCAAATG 57.712 29.630 6.22 0.00 0.00 2.32
5172 8616 9.289303 GATATGCAAAGTTACGAATTCAAATGT 57.711 29.630 6.22 0.00 0.00 2.71
5173 8617 7.945033 ATGCAAAGTTACGAATTCAAATGTT 57.055 28.000 6.22 0.00 0.00 2.71
5174 8618 7.388290 TGCAAAGTTACGAATTCAAATGTTC 57.612 32.000 6.22 0.00 0.00 3.18
5175 8619 7.199766 TGCAAAGTTACGAATTCAAATGTTCT 58.800 30.769 6.22 0.00 0.00 3.01
5176 8620 7.704472 TGCAAAGTTACGAATTCAAATGTTCTT 59.296 29.630 6.22 2.06 0.00 2.52
5177 8621 8.539674 GCAAAGTTACGAATTCAAATGTTCTTT 58.460 29.630 6.22 7.09 0.00 2.52
5185 8629 8.987890 ACGAATTCAAATGTTCTTTTATTTGGG 58.012 29.630 6.22 0.00 41.98 4.12
5186 8630 9.202273 CGAATTCAAATGTTCTTTTATTTGGGA 57.798 29.630 6.22 0.00 41.98 4.37
5191 8635 9.541143 TCAAATGTTCTTTTATTTGGGAGAAAC 57.459 29.630 0.00 0.00 41.98 2.78
5192 8636 9.323985 CAAATGTTCTTTTATTTGGGAGAAACA 57.676 29.630 0.00 0.00 39.44 2.83
5193 8637 9.898152 AAATGTTCTTTTATTTGGGAGAAACAA 57.102 25.926 0.00 0.00 30.67 2.83
5194 8638 9.898152 AATGTTCTTTTATTTGGGAGAAACAAA 57.102 25.926 0.00 0.00 41.50 2.83
5195 8639 9.898152 ATGTTCTTTTATTTGGGAGAAACAAAA 57.102 25.926 0.00 0.00 40.74 2.44
5196 8640 9.726438 TGTTCTTTTATTTGGGAGAAACAAAAA 57.274 25.926 0.00 0.00 40.74 1.94
5215 8659 4.454728 AAAAGAGAAGTTTGCTTGCACA 57.545 36.364 0.00 0.00 34.61 4.57
5216 8660 4.454728 AAAGAGAAGTTTGCTTGCACAA 57.545 36.364 0.00 0.00 34.61 3.33
5217 8661 4.660789 AAGAGAAGTTTGCTTGCACAAT 57.339 36.364 0.00 0.00 34.61 2.71
5218 8662 4.234530 AGAGAAGTTTGCTTGCACAATC 57.765 40.909 0.00 0.00 34.61 2.67
5219 8663 3.887716 AGAGAAGTTTGCTTGCACAATCT 59.112 39.130 0.00 0.00 34.61 2.40
5220 8664 4.340381 AGAGAAGTTTGCTTGCACAATCTT 59.660 37.500 11.23 11.23 40.52 2.40
5221 8665 5.014808 AGAAGTTTGCTTGCACAATCTTT 57.985 34.783 12.20 3.87 38.86 2.52
5222 8666 4.807304 AGAAGTTTGCTTGCACAATCTTTG 59.193 37.500 12.20 0.00 38.86 2.77
5223 8667 3.460103 AGTTTGCTTGCACAATCTTTGG 58.540 40.909 0.00 0.00 34.12 3.28
5237 8681 4.519540 ATCTTTGGTGAAAAATGGACGG 57.480 40.909 0.00 0.00 0.00 4.79
5242 8686 1.068541 GGTGAAAAATGGACGGTGAGC 60.069 52.381 0.00 0.00 0.00 4.26
5246 8690 3.438781 TGAAAAATGGACGGTGAGCATAC 59.561 43.478 0.00 0.00 0.00 2.39
5252 8696 0.460284 GACGGTGAGCATACAGGGTG 60.460 60.000 0.00 0.00 0.00 4.61
5272 8716 2.092646 TGCACTGATATGGGGTACAACC 60.093 50.000 0.00 0.00 37.60 3.77
5278 8722 3.201266 TGATATGGGGTACAACCAGAACC 59.799 47.826 13.15 6.87 42.15 3.62
5279 8723 1.755200 ATGGGGTACAACCAGAACCT 58.245 50.000 13.15 0.00 42.15 3.50
5282 8726 1.703513 GGGGTACAACCAGAACCTTCT 59.296 52.381 0.00 0.00 41.02 2.85
5299 8743 4.096682 ACCTTCTCGTCAGACTAGTTATGC 59.903 45.833 0.00 0.00 0.00 3.14
5322 8768 4.829872 TGGTTATTGTCGTCCCAACTAT 57.170 40.909 0.00 0.00 0.00 2.12
5337 8783 7.255836 CGTCCCAACTATAATCAACTGGAGATA 60.256 40.741 0.00 0.00 0.00 1.98
5338 8784 8.091449 GTCCCAACTATAATCAACTGGAGATAG 58.909 40.741 0.00 0.00 34.11 2.08
5340 8786 7.445121 CCAACTATAATCAACTGGAGATAGCA 58.555 38.462 0.00 0.00 32.43 3.49
5341 8787 8.099537 CCAACTATAATCAACTGGAGATAGCAT 58.900 37.037 0.00 0.00 32.43 3.79
5358 8806 8.682936 AGATAGCATGGTTAACTATTTGAAGG 57.317 34.615 1.12 0.00 0.00 3.46
5414 8862 3.334583 TGCAGGAGGACATGTTAACTC 57.665 47.619 7.22 14.30 0.00 3.01
5488 8936 4.595986 TCAACCTAAAGATTAGGGGCAAC 58.404 43.478 17.91 0.00 39.00 4.17
5492 8940 4.141779 ACCTAAAGATTAGGGGCAACGTAG 60.142 45.833 17.91 0.00 39.00 3.51
5553 9001 4.277476 CACTATATTGTTCCCTTGGCCAA 58.723 43.478 19.25 19.25 0.00 4.52
5572 9020 0.907230 AGGGACCCAAGACTGAGCTC 60.907 60.000 14.60 6.82 0.00 4.09
5622 9070 0.250295 GTATTGGCGCCTGCTCCATA 60.250 55.000 29.70 10.94 42.25 2.74
5653 9101 6.017440 TGGCAGCTACCGTTAAAATCAATATC 60.017 38.462 0.00 0.00 0.00 1.63
5672 9120 2.658285 TCTTGAATGGGCCATGTGATC 58.342 47.619 22.01 14.36 0.00 2.92
5735 9183 3.072944 GCTGAGACCCATATCATTCTGC 58.927 50.000 0.00 0.00 0.00 4.26
5740 9188 2.802816 GACCCATATCATTCTGCACGAC 59.197 50.000 0.00 0.00 0.00 4.34
5745 9193 4.537015 CATATCATTCTGCACGACTACGA 58.463 43.478 0.00 0.00 42.66 3.43
5765 9213 4.082787 ACGAAAACAAAGCGATGGATGATT 60.083 37.500 0.00 0.00 0.00 2.57
5768 9216 6.526325 CGAAAACAAAGCGATGGATGATTTTA 59.474 34.615 0.00 0.00 0.00 1.52
5769 9217 7.253420 CGAAAACAAAGCGATGGATGATTTTAG 60.253 37.037 0.00 0.00 0.00 1.85
5805 9253 1.466950 TGGTTCGATTGCTTTAAGCCG 59.533 47.619 14.80 10.78 41.51 5.52
5888 9336 6.671614 TCACTGTTTGTTTTACTACCAGTG 57.328 37.500 10.84 10.84 38.90 3.66
5969 9417 4.693283 CAATCACGGTTCCTATGAGCTTA 58.307 43.478 0.00 0.00 0.00 3.09
6058 9506 5.560724 AGCTCTGTGCCTCAAAAACTATTA 58.439 37.500 0.00 0.00 44.23 0.98
6086 9534 2.958818 AGGATGCTTGGTCGGATACTA 58.041 47.619 0.00 0.00 0.00 1.82
6115 9565 8.839310 ATGTCTACAATTCTACCTGATTATGC 57.161 34.615 0.00 0.00 0.00 3.14
6150 9600 5.784177 TGTTTGGTTTCAACTTTGTTGCTA 58.216 33.333 5.65 0.00 31.78 3.49
6163 9613 6.924111 ACTTTGTTGCTATGTTTCCCTTATG 58.076 36.000 0.00 0.00 0.00 1.90
6164 9614 5.913137 TTGTTGCTATGTTTCCCTTATGG 57.087 39.130 0.00 0.00 0.00 2.74
6165 9615 5.186256 TGTTGCTATGTTTCCCTTATGGA 57.814 39.130 0.00 0.00 43.18 3.41
6184 9634 2.498167 GAATATGAGCCATGCTTCGGT 58.502 47.619 0.00 0.00 39.88 4.69
6214 13163 2.237893 CCTCCACAAACCGTATAAGGGT 59.762 50.000 9.64 0.00 38.12 4.34
6220 13169 6.040842 TCCACAAACCGTATAAGGGTAGTATC 59.959 42.308 9.64 0.00 34.89 2.24
6242 13191 7.633361 ATCGTCATTTGACCATAACGTATAC 57.367 36.000 5.17 0.00 41.86 1.47
6255 13204 3.976793 ACGTATACACACCTCCGTATG 57.023 47.619 3.32 0.00 31.02 2.39
6262 13211 0.179111 ACACCTCCGTATGTGATGCG 60.179 55.000 0.00 0.00 36.35 4.73
6271 13220 1.781429 GTATGTGATGCGTACGAGCTG 59.219 52.381 21.65 0.00 38.13 4.24
6297 13246 3.001395 AGACGTACATAGCAGATTCGC 57.999 47.619 0.00 0.00 0.00 4.70
6303 13252 3.537206 ATAGCAGATTCGCCGGCCC 62.537 63.158 23.46 7.82 0.00 5.80
6314 13263 2.700773 GCCGGCCCATCAGACAAAC 61.701 63.158 18.11 0.00 0.00 2.93
6400 13351 2.990740 AAAAATAGGTGGGTGAGGCA 57.009 45.000 0.00 0.00 0.00 4.75
6401 13352 2.514458 AAAATAGGTGGGTGAGGCAG 57.486 50.000 0.00 0.00 0.00 4.85
6402 13353 1.372501 AAATAGGTGGGTGAGGCAGT 58.627 50.000 0.00 0.00 0.00 4.40
6537 13488 3.408020 CGTTTTTCGCCGGCTCGA 61.408 61.111 26.68 13.00 36.60 4.04
7057 14055 4.722700 ACAGCAAGGCGCCGGATT 62.723 61.111 23.20 7.29 44.04 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 140 3.614150 CGATGCCGGCTATGTATTGTAGT 60.614 47.826 29.70 0.00 0.00 2.73
145 147 1.006220 CTGCGATGCCGGCTATGTA 60.006 57.895 29.70 14.95 36.06 2.29
157 159 4.928661 CTAGTTGTAGCAAAACTGCGAT 57.071 40.909 8.47 0.00 38.32 4.58
229 232 2.660552 CGTCGCGGGTCACAACTT 60.661 61.111 6.13 0.00 0.00 2.66
249 252 0.456653 GCCGCAAAATTGTCATCGCT 60.457 50.000 0.00 0.00 0.00 4.93
299 304 3.317711 AGAATGGATGTTGCAAAACGTGA 59.682 39.130 0.00 0.00 0.00 4.35
353 358 2.453638 GCCCTTTGTAGCTCGTCGC 61.454 63.158 0.00 0.00 39.57 5.19
372 377 4.091509 GCATAAAAGTCTGTCATCGTCGTT 59.908 41.667 0.00 0.00 0.00 3.85
379 384 4.082571 GGTTGCAGCATAAAAGTCTGTCAT 60.083 41.667 2.05 0.00 0.00 3.06
392 399 1.267806 CAGAGAAAACGGTTGCAGCAT 59.732 47.619 2.05 0.00 0.00 3.79
411 418 1.598882 TTGCACGGTCATAGCAAACA 58.401 45.000 1.61 0.00 44.39 2.83
493 500 4.999939 CTTGTTGCCGCCGGTTGC 63.000 66.667 4.45 6.88 0.00 4.17
494 501 2.840066 TTCTTGTTGCCGCCGGTTG 61.840 57.895 4.45 0.00 0.00 3.77
495 502 2.517402 TTCTTGTTGCCGCCGGTT 60.517 55.556 4.45 0.00 0.00 4.44
496 503 3.284449 GTTCTTGTTGCCGCCGGT 61.284 61.111 4.45 0.00 0.00 5.28
497 504 2.978010 AGTTCTTGTTGCCGCCGG 60.978 61.111 0.00 0.00 0.00 6.13
498 505 2.252260 CAGTTCTTGTTGCCGCCG 59.748 61.111 0.00 0.00 0.00 6.46
499 506 2.050077 GCAGTTCTTGTTGCCGCC 60.050 61.111 0.00 0.00 34.28 6.13
500 507 0.730494 GATGCAGTTCTTGTTGCCGC 60.730 55.000 0.00 0.00 39.54 6.53
501 508 0.109597 GGATGCAGTTCTTGTTGCCG 60.110 55.000 0.00 0.00 39.54 5.69
502 509 0.961019 TGGATGCAGTTCTTGTTGCC 59.039 50.000 0.00 0.00 39.54 4.52
503 510 1.668047 GCTGGATGCAGTTCTTGTTGC 60.668 52.381 16.22 0.00 42.31 4.17
504 511 1.400629 CGCTGGATGCAGTTCTTGTTG 60.401 52.381 16.22 0.00 43.06 3.33
505 512 0.877071 CGCTGGATGCAGTTCTTGTT 59.123 50.000 16.22 0.00 43.06 2.83
506 513 0.957395 CCGCTGGATGCAGTTCTTGT 60.957 55.000 16.22 0.00 43.06 3.16
507 514 0.674581 TCCGCTGGATGCAGTTCTTG 60.675 55.000 16.22 1.41 43.06 3.02
508 515 0.392193 CTCCGCTGGATGCAGTTCTT 60.392 55.000 16.22 0.00 43.06 2.52
509 516 1.220206 CTCCGCTGGATGCAGTTCT 59.780 57.895 16.22 0.00 43.06 3.01
510 517 2.467826 GCTCCGCTGGATGCAGTTC 61.468 63.158 16.22 0.00 43.06 3.01
511 518 2.437359 GCTCCGCTGGATGCAGTT 60.437 61.111 16.22 0.00 43.06 3.16
512 519 3.397439 AGCTCCGCTGGATGCAGT 61.397 61.111 16.22 0.00 43.06 4.40
574 581 3.515316 CTCCGGCAACACCAGTCGT 62.515 63.158 0.00 0.00 39.03 4.34
595 602 2.659897 CTCGCTAGTGATGGCCGC 60.660 66.667 6.42 0.00 0.00 6.53
606 613 4.777854 TGCAGCTCCCCCTCGCTA 62.778 66.667 0.00 0.00 34.58 4.26
630 637 0.319813 ATGCAGCAAAAACTTCGCCC 60.320 50.000 0.00 0.00 0.00 6.13
724 731 3.142393 CCGCTACCCCCTCATCTG 58.858 66.667 0.00 0.00 0.00 2.90
758 765 4.783621 TCCATGTCGCCTGGCTGC 62.784 66.667 17.92 9.64 33.56 5.25
797 804 5.588845 TCTTTCTCTCTCCTTCATCCTCTT 58.411 41.667 0.00 0.00 0.00 2.85
809 816 3.427193 GTGCGTTGACTTCTTTCTCTCTC 59.573 47.826 0.00 0.00 0.00 3.20
810 817 3.181475 TGTGCGTTGACTTCTTTCTCTCT 60.181 43.478 0.00 0.00 0.00 3.10
817 824 2.061773 CGATCTGTGCGTTGACTTCTT 58.938 47.619 0.00 0.00 0.00 2.52
843 850 3.842923 ACCCGATCCAGCGAGCAG 61.843 66.667 0.00 0.00 0.00 4.24
910 917 1.480219 CGATTTGACTAGGGCGACGC 61.480 60.000 12.43 12.43 0.00 5.19
912 919 1.152383 GCCGATTTGACTAGGGCGAC 61.152 60.000 0.00 0.00 33.58 5.19
930 937 2.093783 CCGAGGAGTGTAAATTGTTCGC 59.906 50.000 0.00 0.00 0.00 4.70
938 945 0.809385 CTCTCGCCGAGGAGTGTAAA 59.191 55.000 15.08 0.00 36.06 2.01
954 961 0.682532 TCTCAGCCATCTCGCACTCT 60.683 55.000 0.00 0.00 0.00 3.24
955 962 0.527385 GTCTCAGCCATCTCGCACTC 60.527 60.000 0.00 0.00 0.00 3.51
981 988 3.237628 CATGTGTGACTCTGTCGTGTAG 58.762 50.000 0.00 0.00 34.95 2.74
1001 1008 3.147595 CCGCATCCGTCTCCTCCA 61.148 66.667 0.00 0.00 0.00 3.86
1028 1035 3.251571 GTGTATGACTCCGTTTCTGACC 58.748 50.000 0.00 0.00 0.00 4.02
1035 1042 0.169672 CCGTCGTGTATGACTCCGTT 59.830 55.000 3.06 0.00 36.71 4.44
1037 1044 0.247974 GTCCGTCGTGTATGACTCCG 60.248 60.000 3.06 0.00 36.71 4.63
1198 1205 1.361668 CGCGTGCAGACATAGGCTTT 61.362 55.000 0.00 0.00 0.00 3.51
1203 1210 0.803768 AGAAGCGCGTGCAGACATAG 60.804 55.000 24.79 0.00 46.23 2.23
1245 1252 0.873054 GACACTCTTCGTCGAGGTCA 59.127 55.000 4.85 0.00 34.34 4.02
1260 1267 5.592054 TGTGAATAGCTAGCATACTGACAC 58.408 41.667 18.83 16.03 0.00 3.67
1268 1275 7.255660 GGAGTACTAGTTGTGAATAGCTAGCAT 60.256 40.741 18.83 5.66 35.60 3.79
1270 1277 6.440436 GGAGTACTAGTTGTGAATAGCTAGC 58.560 44.000 6.62 6.62 35.60 3.42
1271 1278 6.773685 AGGGAGTACTAGTTGTGAATAGCTAG 59.226 42.308 0.00 0.00 37.46 3.42
1272 1279 6.670617 AGGGAGTACTAGTTGTGAATAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
1273 1280 5.520751 AGGGAGTACTAGTTGTGAATAGCT 58.479 41.667 0.00 0.00 0.00 3.32
4440 7870 3.840666 ACTGAGAATTGGTTAGCTCCTGA 59.159 43.478 0.00 0.00 0.00 3.86
4449 7879 2.711009 TGACCTCCACTGAGAATTGGTT 59.289 45.455 0.00 0.00 41.42 3.67
4474 7904 3.261580 TGACATTAACAGATGCCTCGTG 58.738 45.455 0.00 0.00 0.00 4.35
4557 7987 3.822192 TCGACCTCATCCCGTGCG 61.822 66.667 0.00 0.00 0.00 5.34
4561 7991 1.100510 TTGTAGTCGACCTCATCCCG 58.899 55.000 13.01 0.00 0.00 5.14
4581 8011 1.671850 CGCCGGAACAAGTAGACACAT 60.672 52.381 5.05 0.00 0.00 3.21
4612 8042 2.434702 GGGACTCGATGTACTGGGAATT 59.565 50.000 0.00 0.00 0.00 2.17
4680 8114 6.614694 TTTTGCATGGAGGTAGTAGTAAGA 57.385 37.500 0.00 0.00 0.00 2.10
4718 8152 2.599677 GCATGGAGGTAGTAGCCTACT 58.400 52.381 9.74 9.74 42.71 2.57
4727 8161 6.092670 CGTCATATATTTTGGCATGGAGGTAG 59.907 42.308 0.00 0.00 0.00 3.18
4728 8162 5.937540 CGTCATATATTTTGGCATGGAGGTA 59.062 40.000 0.00 0.00 0.00 3.08
4729 8163 4.761739 CGTCATATATTTTGGCATGGAGGT 59.238 41.667 0.00 0.00 0.00 3.85
4730 8164 4.761739 ACGTCATATATTTTGGCATGGAGG 59.238 41.667 0.00 0.00 0.00 4.30
4731 8165 5.947228 ACGTCATATATTTTGGCATGGAG 57.053 39.130 0.00 0.00 0.00 3.86
4732 8166 6.061441 AGAACGTCATATATTTTGGCATGGA 58.939 36.000 0.00 0.00 0.00 3.41
4733 8167 6.317789 AGAACGTCATATATTTTGGCATGG 57.682 37.500 0.00 0.00 0.00 3.66
4736 8170 8.717821 GCTATTAGAACGTCATATATTTTGGCA 58.282 33.333 0.00 0.00 0.00 4.92
4737 8171 8.175716 GGCTATTAGAACGTCATATATTTTGGC 58.824 37.037 0.00 0.00 0.00 4.52
4738 8172 9.436957 AGGCTATTAGAACGTCATATATTTTGG 57.563 33.333 0.00 0.00 0.00 3.28
4740 8174 9.654663 GGAGGCTATTAGAACGTCATATATTTT 57.345 33.333 0.00 0.00 0.00 1.82
4741 8175 8.258708 GGGAGGCTATTAGAACGTCATATATTT 58.741 37.037 0.00 0.00 0.00 1.40
4742 8176 7.399191 TGGGAGGCTATTAGAACGTCATATATT 59.601 37.037 0.00 0.00 0.00 1.28
4743 8177 6.895756 TGGGAGGCTATTAGAACGTCATATAT 59.104 38.462 0.00 0.00 0.00 0.86
4744 8178 6.250711 TGGGAGGCTATTAGAACGTCATATA 58.749 40.000 0.00 0.00 0.00 0.86
4745 8179 5.084519 TGGGAGGCTATTAGAACGTCATAT 58.915 41.667 0.00 0.00 0.00 1.78
4746 8180 4.476297 TGGGAGGCTATTAGAACGTCATA 58.524 43.478 0.00 0.00 0.00 2.15
4747 8181 3.305720 TGGGAGGCTATTAGAACGTCAT 58.694 45.455 0.00 0.00 0.00 3.06
4748 8182 2.742348 TGGGAGGCTATTAGAACGTCA 58.258 47.619 0.00 0.00 0.00 4.35
4749 8183 3.814005 TTGGGAGGCTATTAGAACGTC 57.186 47.619 0.00 0.00 0.00 4.34
4750 8184 4.259356 GTTTTGGGAGGCTATTAGAACGT 58.741 43.478 0.00 0.00 0.00 3.99
4751 8185 3.308866 CGTTTTGGGAGGCTATTAGAACG 59.691 47.826 9.45 9.45 0.00 3.95
4752 8186 4.259356 ACGTTTTGGGAGGCTATTAGAAC 58.741 43.478 0.00 0.00 0.00 3.01
4753 8187 4.020039 TGACGTTTTGGGAGGCTATTAGAA 60.020 41.667 0.00 0.00 0.00 2.10
4754 8188 3.516300 TGACGTTTTGGGAGGCTATTAGA 59.484 43.478 0.00 0.00 0.00 2.10
4755 8189 3.869065 TGACGTTTTGGGAGGCTATTAG 58.131 45.455 0.00 0.00 0.00 1.73
4756 8190 3.985019 TGACGTTTTGGGAGGCTATTA 57.015 42.857 0.00 0.00 0.00 0.98
4757 8191 2.871096 TGACGTTTTGGGAGGCTATT 57.129 45.000 0.00 0.00 0.00 1.73
4758 8192 4.706842 ATATGACGTTTTGGGAGGCTAT 57.293 40.909 0.00 0.00 0.00 2.97
4759 8193 5.818678 ATATATGACGTTTTGGGAGGCTA 57.181 39.130 0.00 0.00 0.00 3.93
4760 8194 4.706842 ATATATGACGTTTTGGGAGGCT 57.293 40.909 0.00 0.00 0.00 4.58
4761 8195 5.767816 AAATATATGACGTTTTGGGAGGC 57.232 39.130 0.00 0.00 0.00 4.70
4762 8196 7.012894 TGCTAAAATATATGACGTTTTGGGAGG 59.987 37.037 0.00 0.00 0.00 4.30
4763 8197 7.855904 GTGCTAAAATATATGACGTTTTGGGAG 59.144 37.037 0.00 0.00 27.95 4.30
4764 8198 7.466185 CGTGCTAAAATATATGACGTTTTGGGA 60.466 37.037 0.00 0.00 0.00 4.37
4765 8199 6.631238 CGTGCTAAAATATATGACGTTTTGGG 59.369 38.462 0.00 0.00 0.00 4.12
4766 8200 6.631238 CCGTGCTAAAATATATGACGTTTTGG 59.369 38.462 0.00 0.00 0.00 3.28
4767 8201 7.403421 TCCGTGCTAAAATATATGACGTTTTG 58.597 34.615 0.00 0.00 0.00 2.44
4771 8205 5.221382 ACCTCCGTGCTAAAATATATGACGT 60.221 40.000 0.00 0.00 0.00 4.34
4785 8219 4.080687 GGATAATCTACTACCTCCGTGCT 58.919 47.826 0.00 0.00 0.00 4.40
4790 8224 7.670559 ACATACTGTGGATAATCTACTACCTCC 59.329 40.741 0.00 0.00 0.00 4.30
4807 8241 8.338259 GTGAAGGCTCAATTTATACATACTGTG 58.662 37.037 0.00 0.00 31.88 3.66
4826 8260 1.809684 GGTGGACTTACAGTGAAGGC 58.190 55.000 0.00 0.00 33.25 4.35
4827 8261 1.343465 ACGGTGGACTTACAGTGAAGG 59.657 52.381 0.00 0.00 0.00 3.46
4830 8264 1.067974 CACACGGTGGACTTACAGTGA 59.932 52.381 13.48 0.00 45.57 3.41
4834 8268 2.983907 TTTCACACGGTGGACTTACA 57.016 45.000 13.48 0.00 33.87 2.41
4857 8301 8.657712 GGTACAACTTCCTAATACTGGGATATT 58.342 37.037 0.00 0.00 31.17 1.28
4865 8309 6.930068 ACAGTGGTACAACTTCCTAATACT 57.070 37.500 0.00 0.00 44.16 2.12
4893 8337 7.993183 ACAAAAGAGAGAAATTTCTGGTCTACA 59.007 33.333 25.12 0.00 37.73 2.74
4894 8338 8.286097 CACAAAAGAGAGAAATTTCTGGTCTAC 58.714 37.037 25.12 9.56 37.73 2.59
4920 8364 6.255670 GGTCAAATGTTCTCTTGTTTGGAAAC 59.744 38.462 0.00 0.00 39.33 2.78
4942 8386 4.911514 TGACCTGCAAAGTTTTAAGGTC 57.088 40.909 26.26 26.26 44.95 3.85
4950 8394 5.373222 TGTGTATACTTGACCTGCAAAGTT 58.627 37.500 6.81 0.00 35.74 2.66
5009 8453 9.829507 TTGAACTTTGACAAATTTATGTTCCAT 57.170 25.926 19.30 0.00 33.74 3.41
5010 8454 9.658799 TTTGAACTTTGACAAATTTATGTTCCA 57.341 25.926 19.30 11.12 33.74 3.53
5039 8483 8.615211 GCAACACAGATTTATCATGATAGAACA 58.385 33.333 14.86 0.00 0.00 3.18
5040 8484 7.795734 CGCAACACAGATTTATCATGATAGAAC 59.204 37.037 14.86 9.95 0.00 3.01
5041 8485 7.518848 GCGCAACACAGATTTATCATGATAGAA 60.519 37.037 14.86 12.40 0.00 2.10
5042 8486 6.073602 GCGCAACACAGATTTATCATGATAGA 60.074 38.462 14.86 11.59 0.00 1.98
5043 8487 6.075918 GCGCAACACAGATTTATCATGATAG 58.924 40.000 14.86 6.46 0.00 2.08
5044 8488 5.049474 GGCGCAACACAGATTTATCATGATA 60.049 40.000 11.49 11.49 0.00 2.15
5045 8489 4.261322 GGCGCAACACAGATTTATCATGAT 60.261 41.667 13.81 13.81 0.00 2.45
5046 8490 3.065233 GGCGCAACACAGATTTATCATGA 59.935 43.478 10.83 0.00 0.00 3.07
5047 8491 3.065786 AGGCGCAACACAGATTTATCATG 59.934 43.478 10.83 0.00 0.00 3.07
5048 8492 3.282021 AGGCGCAACACAGATTTATCAT 58.718 40.909 10.83 0.00 0.00 2.45
5049 8493 2.710377 AGGCGCAACACAGATTTATCA 58.290 42.857 10.83 0.00 0.00 2.15
5050 8494 4.875544 TTAGGCGCAACACAGATTTATC 57.124 40.909 10.83 0.00 0.00 1.75
5051 8495 5.637006 TTTTAGGCGCAACACAGATTTAT 57.363 34.783 10.83 0.00 0.00 1.40
5052 8496 5.440234 TTTTTAGGCGCAACACAGATTTA 57.560 34.783 10.83 0.00 0.00 1.40
5053 8497 4.314740 TTTTTAGGCGCAACACAGATTT 57.685 36.364 10.83 0.00 0.00 2.17
5054 8498 4.485163 GATTTTTAGGCGCAACACAGATT 58.515 39.130 10.83 0.00 0.00 2.40
5055 8499 3.426159 CGATTTTTAGGCGCAACACAGAT 60.426 43.478 10.83 0.00 0.00 2.90
5056 8500 2.095969 CGATTTTTAGGCGCAACACAGA 60.096 45.455 10.83 0.00 0.00 3.41
5057 8501 2.241722 CGATTTTTAGGCGCAACACAG 58.758 47.619 10.83 0.00 0.00 3.66
5058 8502 1.604755 ACGATTTTTAGGCGCAACACA 59.395 42.857 10.83 0.00 0.00 3.72
5059 8503 2.325509 ACGATTTTTAGGCGCAACAC 57.674 45.000 10.83 0.00 0.00 3.32
5060 8504 3.357166 AAACGATTTTTAGGCGCAACA 57.643 38.095 10.83 0.00 0.00 3.33
5061 8505 4.702247 AAAAACGATTTTTAGGCGCAAC 57.298 36.364 10.83 0.00 40.80 4.17
5062 8506 6.823678 TTTAAAAACGATTTTTAGGCGCAA 57.176 29.167 10.83 0.00 43.58 4.85
5063 8507 6.823678 TTTTAAAAACGATTTTTAGGCGCA 57.176 29.167 10.83 0.00 43.58 6.09
5064 8508 6.570789 GGTTTTTAAAAACGATTTTTAGGCGC 59.429 34.615 28.50 0.00 47.00 6.53
5065 8509 7.843482 AGGTTTTTAAAAACGATTTTTAGGCG 58.157 30.769 28.50 0.00 47.00 5.52
5072 8516 9.292846 GGCGATATAGGTTTTTAAAAACGATTT 57.707 29.630 28.50 20.84 47.00 2.17
5073 8517 8.680001 AGGCGATATAGGTTTTTAAAAACGATT 58.320 29.630 28.50 21.00 47.00 3.34
5074 8518 8.217131 AGGCGATATAGGTTTTTAAAAACGAT 57.783 30.769 28.50 25.39 47.00 3.73
5075 8519 7.614124 AGGCGATATAGGTTTTTAAAAACGA 57.386 32.000 28.50 21.84 47.00 3.85
5076 8520 9.771915 TTTAGGCGATATAGGTTTTTAAAAACG 57.228 29.630 28.50 19.76 47.00 3.60
5083 8527 9.403583 TCAGATTTTTAGGCGATATAGGTTTTT 57.596 29.630 0.00 0.00 0.00 1.94
5084 8528 8.974060 TCAGATTTTTAGGCGATATAGGTTTT 57.026 30.769 0.00 0.00 0.00 2.43
5085 8529 8.974060 TTCAGATTTTTAGGCGATATAGGTTT 57.026 30.769 0.00 0.00 0.00 3.27
5086 8530 8.974060 TTTCAGATTTTTAGGCGATATAGGTT 57.026 30.769 0.00 0.00 0.00 3.50
5087 8531 8.837389 GTTTTCAGATTTTTAGGCGATATAGGT 58.163 33.333 0.00 0.00 0.00 3.08
5088 8532 8.836413 TGTTTTCAGATTTTTAGGCGATATAGG 58.164 33.333 0.00 0.00 0.00 2.57
5092 8536 9.567848 GAAATGTTTTCAGATTTTTAGGCGATA 57.432 29.630 0.00 0.00 0.00 2.92
5093 8537 8.306761 AGAAATGTTTTCAGATTTTTAGGCGAT 58.693 29.630 3.11 0.00 0.00 4.58
5094 8538 7.594758 CAGAAATGTTTTCAGATTTTTAGGCGA 59.405 33.333 3.11 0.00 0.00 5.54
5095 8539 7.619982 GCAGAAATGTTTTCAGATTTTTAGGCG 60.620 37.037 3.11 0.00 0.00 5.52
5096 8540 7.171337 TGCAGAAATGTTTTCAGATTTTTAGGC 59.829 33.333 3.11 0.00 0.00 3.93
5097 8541 8.490355 GTGCAGAAATGTTTTCAGATTTTTAGG 58.510 33.333 0.00 0.00 0.00 2.69
5098 8542 9.033481 TGTGCAGAAATGTTTTCAGATTTTTAG 57.967 29.630 0.00 0.00 0.00 1.85
5099 8543 8.939201 TGTGCAGAAATGTTTTCAGATTTTTA 57.061 26.923 0.00 0.00 0.00 1.52
5100 8544 7.846644 TGTGCAGAAATGTTTTCAGATTTTT 57.153 28.000 0.00 0.00 0.00 1.94
5101 8545 7.041644 CCATGTGCAGAAATGTTTTCAGATTTT 60.042 33.333 0.00 0.00 0.00 1.82
5102 8546 6.425721 CCATGTGCAGAAATGTTTTCAGATTT 59.574 34.615 0.00 0.00 0.00 2.17
5103 8547 5.929992 CCATGTGCAGAAATGTTTTCAGATT 59.070 36.000 0.00 0.00 0.00 2.40
5104 8548 5.011329 ACCATGTGCAGAAATGTTTTCAGAT 59.989 36.000 0.00 0.00 0.00 2.90
5105 8549 4.341806 ACCATGTGCAGAAATGTTTTCAGA 59.658 37.500 0.00 0.00 0.00 3.27
5106 8550 4.624015 ACCATGTGCAGAAATGTTTTCAG 58.376 39.130 0.00 0.00 0.00 3.02
5107 8551 4.669206 ACCATGTGCAGAAATGTTTTCA 57.331 36.364 0.00 0.00 0.00 2.69
5108 8552 5.772521 ACTACCATGTGCAGAAATGTTTTC 58.227 37.500 0.00 0.00 0.00 2.29
5109 8553 5.789643 ACTACCATGTGCAGAAATGTTTT 57.210 34.783 0.00 0.00 0.00 2.43
5110 8554 6.003950 AGTACTACCATGTGCAGAAATGTTT 58.996 36.000 0.00 0.00 0.00 2.83
5111 8555 5.560724 AGTACTACCATGTGCAGAAATGTT 58.439 37.500 0.00 0.00 0.00 2.71
5112 8556 5.165961 AGTACTACCATGTGCAGAAATGT 57.834 39.130 0.00 0.00 0.00 2.71
5113 8557 5.412594 ACAAGTACTACCATGTGCAGAAATG 59.587 40.000 0.00 0.00 0.00 2.32
5114 8558 5.412594 CACAAGTACTACCATGTGCAGAAAT 59.587 40.000 11.44 0.00 37.03 2.17
5115 8559 4.754618 CACAAGTACTACCATGTGCAGAAA 59.245 41.667 11.44 0.00 37.03 2.52
5116 8560 4.202315 ACACAAGTACTACCATGTGCAGAA 60.202 41.667 20.35 0.00 45.36 3.02
5117 8561 3.323691 ACACAAGTACTACCATGTGCAGA 59.676 43.478 20.35 0.00 45.36 4.26
5118 8562 3.433274 CACACAAGTACTACCATGTGCAG 59.567 47.826 20.35 12.33 45.36 4.41
5119 8563 3.070302 TCACACAAGTACTACCATGTGCA 59.930 43.478 20.35 8.72 45.36 4.57
5120 8564 3.659786 TCACACAAGTACTACCATGTGC 58.340 45.455 20.35 0.00 45.36 4.57
5121 8565 5.237815 ACATCACACAAGTACTACCATGTG 58.762 41.667 19.29 19.29 46.52 3.21
5122 8566 5.483685 ACATCACACAAGTACTACCATGT 57.516 39.130 0.00 0.00 0.00 3.21
5123 8567 5.931724 TCAACATCACACAAGTACTACCATG 59.068 40.000 0.00 0.00 0.00 3.66
5124 8568 6.109156 TCAACATCACACAAGTACTACCAT 57.891 37.500 0.00 0.00 0.00 3.55
5125 8569 5.538849 TCAACATCACACAAGTACTACCA 57.461 39.130 0.00 0.00 0.00 3.25
5126 8570 7.254455 GCATATCAACATCACACAAGTACTACC 60.254 40.741 0.00 0.00 0.00 3.18
5127 8571 7.277760 TGCATATCAACATCACACAAGTACTAC 59.722 37.037 0.00 0.00 0.00 2.73
5128 8572 7.327214 TGCATATCAACATCACACAAGTACTA 58.673 34.615 0.00 0.00 0.00 1.82
5129 8573 6.172630 TGCATATCAACATCACACAAGTACT 58.827 36.000 0.00 0.00 0.00 2.73
5130 8574 6.421377 TGCATATCAACATCACACAAGTAC 57.579 37.500 0.00 0.00 0.00 2.73
5131 8575 7.174772 ACTTTGCATATCAACATCACACAAGTA 59.825 33.333 0.00 0.00 33.73 2.24
5132 8576 5.963176 TTGCATATCAACATCACACAAGT 57.037 34.783 0.00 0.00 0.00 3.16
5133 8577 6.384224 ACTTTGCATATCAACATCACACAAG 58.616 36.000 0.00 0.00 33.73 3.16
5134 8578 6.330004 ACTTTGCATATCAACATCACACAA 57.670 33.333 0.00 0.00 33.73 3.33
5135 8579 5.963176 ACTTTGCATATCAACATCACACA 57.037 34.783 0.00 0.00 33.73 3.72
5136 8580 6.465781 CGTAACTTTGCATATCAACATCACAC 59.534 38.462 0.00 0.00 33.73 3.82
5137 8581 6.370166 TCGTAACTTTGCATATCAACATCACA 59.630 34.615 0.00 0.00 33.73 3.58
5138 8582 6.771076 TCGTAACTTTGCATATCAACATCAC 58.229 36.000 0.00 0.00 33.73 3.06
5139 8583 6.976636 TCGTAACTTTGCATATCAACATCA 57.023 33.333 0.00 0.00 33.73 3.07
5140 8584 8.841444 AATTCGTAACTTTGCATATCAACATC 57.159 30.769 0.00 0.00 33.73 3.06
5141 8585 8.458052 TGAATTCGTAACTTTGCATATCAACAT 58.542 29.630 0.04 0.00 33.73 2.71
5142 8586 7.811653 TGAATTCGTAACTTTGCATATCAACA 58.188 30.769 0.04 0.00 33.73 3.33
5143 8587 8.667987 TTGAATTCGTAACTTTGCATATCAAC 57.332 30.769 0.04 0.00 33.73 3.18
5144 8588 9.853555 ATTTGAATTCGTAACTTTGCATATCAA 57.146 25.926 0.04 0.00 0.00 2.57
5145 8589 9.288124 CATTTGAATTCGTAACTTTGCATATCA 57.712 29.630 0.04 0.00 0.00 2.15
5146 8590 9.289303 ACATTTGAATTCGTAACTTTGCATATC 57.711 29.630 0.04 0.00 0.00 1.63
5147 8591 9.638239 AACATTTGAATTCGTAACTTTGCATAT 57.362 25.926 0.04 0.00 0.00 1.78
5148 8592 9.123709 GAACATTTGAATTCGTAACTTTGCATA 57.876 29.630 0.04 0.00 0.00 3.14
5149 8593 7.867403 AGAACATTTGAATTCGTAACTTTGCAT 59.133 29.630 0.04 0.00 0.00 3.96
5150 8594 7.199766 AGAACATTTGAATTCGTAACTTTGCA 58.800 30.769 0.04 0.00 0.00 4.08
5151 8595 7.623268 AGAACATTTGAATTCGTAACTTTGC 57.377 32.000 0.04 0.00 0.00 3.68
5159 8603 8.987890 CCCAAATAAAAGAACATTTGAATTCGT 58.012 29.630 8.26 0.00 42.25 3.85
5160 8604 9.202273 TCCCAAATAAAAGAACATTTGAATTCG 57.798 29.630 8.26 0.00 42.25 3.34
5165 8609 9.541143 GTTTCTCCCAAATAAAAGAACATTTGA 57.459 29.630 8.26 0.00 42.25 2.69
5166 8610 9.323985 TGTTTCTCCCAAATAAAAGAACATTTG 57.676 29.630 0.00 0.00 40.33 2.32
5167 8611 9.898152 TTGTTTCTCCCAAATAAAAGAACATTT 57.102 25.926 0.00 0.00 0.00 2.32
5168 8612 9.898152 TTTGTTTCTCCCAAATAAAAGAACATT 57.102 25.926 0.00 0.00 0.00 2.71
5169 8613 9.898152 TTTTGTTTCTCCCAAATAAAAGAACAT 57.102 25.926 0.00 0.00 32.28 2.71
5170 8614 9.726438 TTTTTGTTTCTCCCAAATAAAAGAACA 57.274 25.926 3.13 0.00 33.79 3.18
5193 8637 4.819769 TGTGCAAGCAAACTTCTCTTTTT 58.180 34.783 0.00 0.00 32.29 1.94
5194 8638 4.454728 TGTGCAAGCAAACTTCTCTTTT 57.545 36.364 0.00 0.00 32.29 2.27
5195 8639 4.454728 TTGTGCAAGCAAACTTCTCTTT 57.545 36.364 0.00 0.00 32.29 2.52
5196 8640 4.340381 AGATTGTGCAAGCAAACTTCTCTT 59.660 37.500 0.00 0.00 32.29 2.85
5197 8641 3.887716 AGATTGTGCAAGCAAACTTCTCT 59.112 39.130 0.00 0.00 32.29 3.10
5198 8642 4.234530 AGATTGTGCAAGCAAACTTCTC 57.765 40.909 0.00 0.00 32.29 2.87
5199 8643 4.660789 AAGATTGTGCAAGCAAACTTCT 57.339 36.364 6.72 0.00 37.01 2.85
5200 8644 4.025480 CCAAAGATTGTGCAAGCAAACTTC 60.025 41.667 11.36 0.00 39.46 3.01
5201 8645 3.872771 CCAAAGATTGTGCAAGCAAACTT 59.127 39.130 6.72 6.72 41.21 2.66
5202 8646 3.118665 ACCAAAGATTGTGCAAGCAAACT 60.119 39.130 0.00 0.00 33.78 2.66
5203 8647 3.001533 CACCAAAGATTGTGCAAGCAAAC 59.998 43.478 0.00 0.00 31.63 2.93
5204 8648 3.118847 TCACCAAAGATTGTGCAAGCAAA 60.119 39.130 0.00 0.00 31.63 3.68
5205 8649 2.429971 TCACCAAAGATTGTGCAAGCAA 59.570 40.909 0.00 0.00 0.00 3.91
5206 8650 2.030371 TCACCAAAGATTGTGCAAGCA 58.970 42.857 3.00 0.00 0.00 3.91
5207 8651 2.798976 TCACCAAAGATTGTGCAAGC 57.201 45.000 0.00 0.00 0.00 4.01
5208 8652 6.423862 CATTTTTCACCAAAGATTGTGCAAG 58.576 36.000 0.00 0.00 0.00 4.01
5209 8653 5.296283 CCATTTTTCACCAAAGATTGTGCAA 59.704 36.000 0.00 0.00 0.00 4.08
5210 8654 4.815308 CCATTTTTCACCAAAGATTGTGCA 59.185 37.500 0.00 0.00 0.00 4.57
5211 8655 5.050159 GTCCATTTTTCACCAAAGATTGTGC 60.050 40.000 0.00 0.00 0.00 4.57
5212 8656 5.175491 CGTCCATTTTTCACCAAAGATTGTG 59.825 40.000 0.00 0.00 0.00 3.33
5213 8657 5.288804 CGTCCATTTTTCACCAAAGATTGT 58.711 37.500 0.00 0.00 0.00 2.71
5214 8658 4.685628 CCGTCCATTTTTCACCAAAGATTG 59.314 41.667 0.00 0.00 0.00 2.67
5215 8659 4.343814 ACCGTCCATTTTTCACCAAAGATT 59.656 37.500 0.00 0.00 0.00 2.40
5216 8660 3.895041 ACCGTCCATTTTTCACCAAAGAT 59.105 39.130 0.00 0.00 0.00 2.40
5217 8661 3.067461 CACCGTCCATTTTTCACCAAAGA 59.933 43.478 0.00 0.00 0.00 2.52
5218 8662 3.067461 TCACCGTCCATTTTTCACCAAAG 59.933 43.478 0.00 0.00 0.00 2.77
5219 8663 3.024547 TCACCGTCCATTTTTCACCAAA 58.975 40.909 0.00 0.00 0.00 3.28
5220 8664 2.621055 CTCACCGTCCATTTTTCACCAA 59.379 45.455 0.00 0.00 0.00 3.67
5221 8665 2.226330 CTCACCGTCCATTTTTCACCA 58.774 47.619 0.00 0.00 0.00 4.17
5222 8666 1.068541 GCTCACCGTCCATTTTTCACC 60.069 52.381 0.00 0.00 0.00 4.02
5223 8667 1.606668 TGCTCACCGTCCATTTTTCAC 59.393 47.619 0.00 0.00 0.00 3.18
5237 8681 0.036010 AGTGCACCCTGTATGCTCAC 60.036 55.000 14.63 0.00 43.77 3.51
5242 8686 3.405831 CCATATCAGTGCACCCTGTATG 58.594 50.000 14.63 15.69 34.02 2.39
5246 8690 0.179009 CCCCATATCAGTGCACCCTG 60.179 60.000 14.63 6.48 0.00 4.45
5252 8696 2.092646 TGGTTGTACCCCATATCAGTGC 60.093 50.000 0.00 0.00 37.50 4.40
5272 8716 3.754323 ACTAGTCTGACGAGAAGGTTCTG 59.246 47.826 22.18 0.00 37.73 3.02
5278 8722 5.493133 AGCATAACTAGTCTGACGAGAAG 57.507 43.478 22.18 11.61 0.00 2.85
5279 8723 5.393135 CCAAGCATAACTAGTCTGACGAGAA 60.393 44.000 22.18 11.32 0.00 2.87
5282 8726 3.762288 ACCAAGCATAACTAGTCTGACGA 59.238 43.478 9.06 0.00 0.00 4.20
5299 8743 3.408634 AGTTGGGACGACAATAACCAAG 58.591 45.455 0.00 0.00 41.44 3.61
5322 8768 5.894298 ACCATGCTATCTCCAGTTGATTA 57.106 39.130 0.00 0.00 0.00 1.75
5337 8783 5.016173 TGCCTTCAAATAGTTAACCATGCT 58.984 37.500 0.88 0.00 0.00 3.79
5338 8784 5.323371 TGCCTTCAAATAGTTAACCATGC 57.677 39.130 0.88 0.00 0.00 4.06
5340 8786 7.823799 CCAAAATGCCTTCAAATAGTTAACCAT 59.176 33.333 0.88 0.00 0.00 3.55
5341 8787 7.158021 CCAAAATGCCTTCAAATAGTTAACCA 58.842 34.615 0.88 0.00 0.00 3.67
5358 8806 7.099120 AGGAAAGATAATCAACACCAAAATGC 58.901 34.615 0.00 0.00 0.00 3.56
5414 8862 0.244994 CCTCGACTTGGACCTGTCAG 59.755 60.000 15.14 11.65 33.18 3.51
5553 9001 0.907230 GAGCTCAGTCTTGGGTCCCT 60.907 60.000 9.40 0.00 0.00 4.20
5572 9020 2.033550 CGTACTCAGCCAGCTAGTTAGG 59.966 54.545 0.00 0.00 0.00 2.69
5653 9101 1.684983 GGATCACATGGCCCATTCAAG 59.315 52.381 0.00 0.00 0.00 3.02
5735 9183 2.216940 TCGCTTTGTTTTCGTAGTCGTG 59.783 45.455 0.00 0.00 38.33 4.35
5740 9188 4.092821 TCATCCATCGCTTTGTTTTCGTAG 59.907 41.667 0.00 0.00 0.00 3.51
5745 9193 7.601856 TCTAAAATCATCCATCGCTTTGTTTT 58.398 30.769 0.00 0.00 0.00 2.43
5765 9213 8.673711 CGAACCACCATCTTTGATTAATCTAAA 58.326 33.333 16.24 12.87 0.00 1.85
5768 9216 6.414732 TCGAACCACCATCTTTGATTAATCT 58.585 36.000 16.24 0.00 0.00 2.40
5769 9217 6.677781 TCGAACCACCATCTTTGATTAATC 57.322 37.500 8.60 8.60 0.00 1.75
5785 9233 1.466950 CGGCTTAAAGCAATCGAACCA 59.533 47.619 0.00 0.00 44.75 3.67
5805 9253 0.912486 AGGGACAGCCACCAGATTAC 59.088 55.000 0.00 0.00 35.15 1.89
5818 9266 2.576191 CAAGGAATTAGGGACAGGGACA 59.424 50.000 0.00 0.00 0.00 4.02
5888 9336 3.752222 GAGGTGCATTCATCCTCATCATC 59.248 47.826 13.90 0.00 44.85 2.92
5969 9417 4.461198 CTTGTCCAAGTAACCTCCACTTT 58.539 43.478 0.00 0.00 33.99 2.66
6058 9506 3.535561 CGACCAAGCATCCTAGAACAAT 58.464 45.455 0.00 0.00 0.00 2.71
6115 9565 4.584325 TGAAACCAAACATCTTTCTGGAGG 59.416 41.667 0.00 0.00 32.97 4.30
6163 9613 1.808945 CCGAAGCATGGCTCATATTCC 59.191 52.381 0.00 0.00 38.25 3.01
6164 9614 2.498167 ACCGAAGCATGGCTCATATTC 58.502 47.619 0.00 0.00 38.25 1.75
6165 9615 2.645838 ACCGAAGCATGGCTCATATT 57.354 45.000 0.00 0.00 38.25 1.28
6166 9616 2.368548 TGTACCGAAGCATGGCTCATAT 59.631 45.455 0.00 0.00 38.25 1.78
6167 9617 1.760029 TGTACCGAAGCATGGCTCATA 59.240 47.619 0.00 0.00 38.25 2.15
6214 13163 6.798482 ACGTTATGGTCAAATGACGATACTA 58.202 36.000 15.14 2.88 42.62 1.82
6220 13169 6.253942 TGTGTATACGTTATGGTCAAATGACG 59.746 38.462 7.42 0.66 45.65 4.35
6242 13191 1.290203 GCATCACATACGGAGGTGTG 58.710 55.000 12.89 10.97 45.26 3.82
6255 13204 1.189403 GTACAGCTCGTACGCATCAC 58.811 55.000 11.24 0.00 41.13 3.06
6262 13211 2.343917 CGTCTACGTACAGCTCGTAC 57.656 55.000 13.34 13.34 46.03 3.67
6274 13223 4.142397 CGAATCTGCTATGTACGTCTACG 58.858 47.826 0.00 0.04 46.33 3.51
6278 13227 2.052157 GGCGAATCTGCTATGTACGTC 58.948 52.381 0.00 0.00 34.52 4.34
6295 13244 4.776322 TTGTCTGATGGGCCGGCG 62.776 66.667 22.54 5.20 0.00 6.46
6297 13246 1.002134 AGTTTGTCTGATGGGCCGG 60.002 57.895 0.00 0.00 0.00 6.13
6303 13252 0.110056 GTGCGCCAGTTTGTCTGATG 60.110 55.000 4.18 0.00 46.27 3.07
6386 13337 1.789523 GATACTGCCTCACCCACCTA 58.210 55.000 0.00 0.00 0.00 3.08
6387 13338 1.330655 CGATACTGCCTCACCCACCT 61.331 60.000 0.00 0.00 0.00 4.00
6388 13339 1.144057 CGATACTGCCTCACCCACC 59.856 63.158 0.00 0.00 0.00 4.61
6389 13340 0.535335 TTCGATACTGCCTCACCCAC 59.465 55.000 0.00 0.00 0.00 4.61
6390 13341 0.535335 GTTCGATACTGCCTCACCCA 59.465 55.000 0.00 0.00 0.00 4.51
6391 13342 0.535335 TGTTCGATACTGCCTCACCC 59.465 55.000 0.00 0.00 0.00 4.61
6392 13343 1.641577 GTGTTCGATACTGCCTCACC 58.358 55.000 0.00 0.00 0.00 4.02
6397 13348 1.084289 GTTGGGTGTTCGATACTGCC 58.916 55.000 0.00 0.00 0.00 4.85
6398 13349 1.084289 GGTTGGGTGTTCGATACTGC 58.916 55.000 0.00 0.00 0.00 4.40
6399 13350 2.233922 AGAGGTTGGGTGTTCGATACTG 59.766 50.000 0.00 0.00 0.00 2.74
6400 13351 2.537143 AGAGGTTGGGTGTTCGATACT 58.463 47.619 0.00 0.00 0.00 2.12
6401 13352 3.000727 CAAGAGGTTGGGTGTTCGATAC 58.999 50.000 0.00 0.00 0.00 2.24
6402 13353 3.328382 CAAGAGGTTGGGTGTTCGATA 57.672 47.619 0.00 0.00 0.00 2.92
6511 13462 1.729484 GCGAAAAACGGGCTTCTGC 60.729 57.895 0.00 0.00 42.83 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.