Multiple sequence alignment - TraesCS2B01G155400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G155400 chr2B 100.000 2285 0 0 1 2285 123150372 123152656 0.000000e+00 4220
1 TraesCS2B01G155400 chr2B 87.377 1220 131 12 355 1562 611550639 611549431 0.000000e+00 1378
2 TraesCS2B01G155400 chr2B 90.318 723 68 2 1564 2285 49837807 49838528 0.000000e+00 946
3 TraesCS2B01G155400 chr2B 89.903 723 72 1 1564 2285 727355454 727356176 0.000000e+00 929
4 TraesCS2B01G155400 chr2D 89.444 1222 103 13 355 1563 511056204 511054996 0.000000e+00 1519
5 TraesCS2B01G155400 chr2D 87.849 1218 103 13 355 1563 649421390 649420209 0.000000e+00 1387
6 TraesCS2B01G155400 chr2D 91.575 724 59 2 1563 2285 202106913 202107635 0.000000e+00 998
7 TraesCS2B01G155400 chr2D 91.209 728 57 4 1563 2285 336649602 336648877 0.000000e+00 983
8 TraesCS2B01G155400 chr3D 88.421 1235 106 16 355 1565 51469146 51470367 0.000000e+00 1454
9 TraesCS2B01G155400 chr6D 88.374 1230 94 18 355 1563 367749191 367747990 0.000000e+00 1434
10 TraesCS2B01G155400 chr6B 87.256 1232 124 15 354 1563 15170551 15169331 0.000000e+00 1375
11 TraesCS2B01G155400 chr6B 91.160 724 63 1 1563 2285 42246933 42247656 0.000000e+00 981
12 TraesCS2B01G155400 chr6B 88.453 433 35 7 1141 1563 551780579 551781006 2.030000e-140 508
13 TraesCS2B01G155400 chr1D 90.444 1036 73 8 355 1373 126184163 126185189 0.000000e+00 1341
14 TraesCS2B01G155400 chr1A 87.989 1124 100 14 452 1563 494156516 494155416 0.000000e+00 1295
15 TraesCS2B01G155400 chr3A 88.796 1080 86 11 510 1563 737424700 737423630 0.000000e+00 1291
16 TraesCS2B01G155400 chrUn 90.261 996 76 10 510 1494 358002252 358003237 0.000000e+00 1282
17 TraesCS2B01G155400 chr4A 90.705 893 64 9 682 1561 734887297 734886411 0.000000e+00 1171
18 TraesCS2B01G155400 chr7A 91.933 781 53 7 561 1338 696747736 696746963 0.000000e+00 1085
19 TraesCS2B01G155400 chr7A 92.393 723 53 2 1563 2284 392779921 392780642 0.000000e+00 1029
20 TraesCS2B01G155400 chr7A 91.160 724 63 1 1563 2285 94697944 94698667 0.000000e+00 981
21 TraesCS2B01G155400 chr7B 92.758 718 51 1 1569 2285 557176025 557176742 0.000000e+00 1037
22 TraesCS2B01G155400 chr6A 90.305 722 68 2 1565 2285 352473597 352474317 0.000000e+00 944
23 TraesCS2B01G155400 chr5B 94.051 353 19 2 1 351 626307380 626307028 3.340000e-148 534
24 TraesCS2B01G155400 chr3B 85.294 374 36 5 1196 1561 446452661 446452299 3.590000e-98 368
25 TraesCS2B01G155400 chr4D 80.055 366 46 19 2 351 507377279 507377633 1.750000e-61 246
26 TraesCS2B01G155400 chr5A 79.167 360 63 10 2 354 547611513 547611867 2.930000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G155400 chr2B 123150372 123152656 2284 False 4220 4220 100.000 1 2285 1 chr2B.!!$F2 2284
1 TraesCS2B01G155400 chr2B 611549431 611550639 1208 True 1378 1378 87.377 355 1562 1 chr2B.!!$R1 1207
2 TraesCS2B01G155400 chr2B 49837807 49838528 721 False 946 946 90.318 1564 2285 1 chr2B.!!$F1 721
3 TraesCS2B01G155400 chr2B 727355454 727356176 722 False 929 929 89.903 1564 2285 1 chr2B.!!$F3 721
4 TraesCS2B01G155400 chr2D 511054996 511056204 1208 True 1519 1519 89.444 355 1563 1 chr2D.!!$R2 1208
5 TraesCS2B01G155400 chr2D 649420209 649421390 1181 True 1387 1387 87.849 355 1563 1 chr2D.!!$R3 1208
6 TraesCS2B01G155400 chr2D 202106913 202107635 722 False 998 998 91.575 1563 2285 1 chr2D.!!$F1 722
7 TraesCS2B01G155400 chr2D 336648877 336649602 725 True 983 983 91.209 1563 2285 1 chr2D.!!$R1 722
8 TraesCS2B01G155400 chr3D 51469146 51470367 1221 False 1454 1454 88.421 355 1565 1 chr3D.!!$F1 1210
9 TraesCS2B01G155400 chr6D 367747990 367749191 1201 True 1434 1434 88.374 355 1563 1 chr6D.!!$R1 1208
10 TraesCS2B01G155400 chr6B 15169331 15170551 1220 True 1375 1375 87.256 354 1563 1 chr6B.!!$R1 1209
11 TraesCS2B01G155400 chr6B 42246933 42247656 723 False 981 981 91.160 1563 2285 1 chr6B.!!$F1 722
12 TraesCS2B01G155400 chr1D 126184163 126185189 1026 False 1341 1341 90.444 355 1373 1 chr1D.!!$F1 1018
13 TraesCS2B01G155400 chr1A 494155416 494156516 1100 True 1295 1295 87.989 452 1563 1 chr1A.!!$R1 1111
14 TraesCS2B01G155400 chr3A 737423630 737424700 1070 True 1291 1291 88.796 510 1563 1 chr3A.!!$R1 1053
15 TraesCS2B01G155400 chrUn 358002252 358003237 985 False 1282 1282 90.261 510 1494 1 chrUn.!!$F1 984
16 TraesCS2B01G155400 chr4A 734886411 734887297 886 True 1171 1171 90.705 682 1561 1 chr4A.!!$R1 879
17 TraesCS2B01G155400 chr7A 696746963 696747736 773 True 1085 1085 91.933 561 1338 1 chr7A.!!$R1 777
18 TraesCS2B01G155400 chr7A 392779921 392780642 721 False 1029 1029 92.393 1563 2284 1 chr7A.!!$F2 721
19 TraesCS2B01G155400 chr7A 94697944 94698667 723 False 981 981 91.160 1563 2285 1 chr7A.!!$F1 722
20 TraesCS2B01G155400 chr7B 557176025 557176742 717 False 1037 1037 92.758 1569 2285 1 chr7B.!!$F1 716
21 TraesCS2B01G155400 chr6A 352473597 352474317 720 False 944 944 90.305 1565 2285 1 chr6A.!!$F1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.033991 AACCCTAGCGCTGAGAGAGA 60.034 55.0 22.9 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2090 0.381801 CGCTTATGTTGCCACCCATC 59.618 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.235369 GCCATCCCTCCCAGTCTC 58.765 66.667 0.00 0.00 0.00 3.36
18 19 2.801631 GCCATCCCTCCCAGTCTCG 61.802 68.421 0.00 0.00 0.00 4.04
19 20 2.801631 CCATCCCTCCCAGTCTCGC 61.802 68.421 0.00 0.00 0.00 5.03
20 21 1.760086 CATCCCTCCCAGTCTCGCT 60.760 63.158 0.00 0.00 0.00 4.93
21 22 1.760086 ATCCCTCCCAGTCTCGCTG 60.760 63.158 0.00 0.00 44.63 5.18
31 32 2.575993 TCTCGCTGAGAGGCTTGC 59.424 61.111 8.56 0.00 46.82 4.01
32 33 2.263852 CTCGCTGAGAGGCTTGCA 59.736 61.111 0.00 0.00 43.20 4.08
33 34 1.810441 CTCGCTGAGAGGCTTGCAG 60.810 63.158 11.76 11.76 43.20 4.41
34 35 2.047465 CGCTGAGAGGCTTGCAGT 60.047 61.111 15.83 0.00 32.39 4.40
35 36 1.670406 CGCTGAGAGGCTTGCAGTT 60.670 57.895 15.83 0.00 32.39 3.16
36 37 1.874562 GCTGAGAGGCTTGCAGTTG 59.125 57.895 15.83 0.00 32.39 3.16
37 38 1.584380 GCTGAGAGGCTTGCAGTTGG 61.584 60.000 15.83 0.00 32.39 3.77
38 39 0.035881 CTGAGAGGCTTGCAGTTGGA 59.964 55.000 8.80 0.00 0.00 3.53
39 40 0.694771 TGAGAGGCTTGCAGTTGGAT 59.305 50.000 0.00 0.00 0.00 3.41
40 41 1.339438 TGAGAGGCTTGCAGTTGGATC 60.339 52.381 0.00 0.00 0.00 3.36
41 42 0.034670 AGAGGCTTGCAGTTGGATCC 60.035 55.000 4.20 4.20 0.00 3.36
42 43 1.372087 GAGGCTTGCAGTTGGATCCG 61.372 60.000 7.39 0.00 0.00 4.18
43 44 2.409870 GGCTTGCAGTTGGATCCGG 61.410 63.158 7.39 0.00 0.00 5.14
44 45 3.056313 GCTTGCAGTTGGATCCGGC 62.056 63.158 7.39 8.80 0.00 6.13
45 46 2.745884 TTGCAGTTGGATCCGGCG 60.746 61.111 7.39 0.00 0.00 6.46
46 47 3.545124 TTGCAGTTGGATCCGGCGT 62.545 57.895 7.39 0.00 0.00 5.68
47 48 3.195698 GCAGTTGGATCCGGCGTC 61.196 66.667 7.39 0.00 0.00 5.19
48 49 2.579201 CAGTTGGATCCGGCGTCT 59.421 61.111 7.39 0.00 0.00 4.18
49 50 1.079127 CAGTTGGATCCGGCGTCTT 60.079 57.895 7.39 0.00 0.00 3.01
50 51 1.079127 AGTTGGATCCGGCGTCTTG 60.079 57.895 7.39 0.00 0.00 3.02
51 52 2.435938 TTGGATCCGGCGTCTTGC 60.436 61.111 7.39 0.00 45.38 4.01
61 62 3.389741 GCGTCTTGCAAGTGATTGG 57.610 52.632 25.19 10.63 45.45 3.16
62 63 0.874390 GCGTCTTGCAAGTGATTGGA 59.126 50.000 25.19 2.09 45.45 3.53
63 64 1.135859 GCGTCTTGCAAGTGATTGGAG 60.136 52.381 25.19 10.15 45.45 3.86
64 65 2.416747 CGTCTTGCAAGTGATTGGAGA 58.583 47.619 25.19 0.16 0.00 3.71
65 66 2.158449 CGTCTTGCAAGTGATTGGAGAC 59.842 50.000 25.19 12.22 0.00 3.36
66 67 3.406764 GTCTTGCAAGTGATTGGAGACT 58.593 45.455 25.19 0.00 0.00 3.24
67 68 3.817647 GTCTTGCAAGTGATTGGAGACTT 59.182 43.478 25.19 0.00 32.48 3.01
72 73 2.376808 AGTGATTGGAGACTTGAGCG 57.623 50.000 0.00 0.00 0.00 5.03
73 74 1.895798 AGTGATTGGAGACTTGAGCGA 59.104 47.619 0.00 0.00 0.00 4.93
74 75 2.094286 AGTGATTGGAGACTTGAGCGAG 60.094 50.000 0.00 0.00 0.00 5.03
75 76 1.895798 TGATTGGAGACTTGAGCGAGT 59.104 47.619 0.00 0.00 0.00 4.18
76 77 2.094494 TGATTGGAGACTTGAGCGAGTC 60.094 50.000 9.40 9.40 45.05 3.36
77 78 0.603569 TTGGAGACTTGAGCGAGTCC 59.396 55.000 13.02 6.17 45.69 3.85
78 79 1.251527 TGGAGACTTGAGCGAGTCCC 61.252 60.000 13.02 13.53 45.69 4.46
79 80 1.513622 GAGACTTGAGCGAGTCCCC 59.486 63.158 13.02 3.88 45.69 4.81
80 81 1.228894 AGACTTGAGCGAGTCCCCA 60.229 57.895 13.02 0.00 45.69 4.96
81 82 1.079750 GACTTGAGCGAGTCCCCAC 60.080 63.158 6.61 0.00 40.10 4.61
82 83 1.534235 ACTTGAGCGAGTCCCCACT 60.534 57.895 0.00 0.00 34.57 4.00
83 84 1.079543 CTTGAGCGAGTCCCCACTG 60.080 63.158 0.00 0.00 30.63 3.66
84 85 1.533033 TTGAGCGAGTCCCCACTGA 60.533 57.895 0.00 0.00 30.63 3.41
85 86 0.904865 TTGAGCGAGTCCCCACTGAT 60.905 55.000 0.00 0.00 30.63 2.90
86 87 1.323271 TGAGCGAGTCCCCACTGATC 61.323 60.000 0.00 0.00 30.63 2.92
87 88 1.000993 AGCGAGTCCCCACTGATCT 59.999 57.895 0.00 0.00 30.63 2.75
88 89 0.616111 AGCGAGTCCCCACTGATCTT 60.616 55.000 0.00 0.00 30.63 2.40
89 90 0.250513 GCGAGTCCCCACTGATCTTT 59.749 55.000 0.00 0.00 30.63 2.52
90 91 1.740718 GCGAGTCCCCACTGATCTTTC 60.741 57.143 0.00 0.00 30.63 2.62
91 92 1.827969 CGAGTCCCCACTGATCTTTCT 59.172 52.381 0.00 0.00 30.63 2.52
92 93 3.024547 CGAGTCCCCACTGATCTTTCTA 58.975 50.000 0.00 0.00 30.63 2.10
93 94 3.181485 CGAGTCCCCACTGATCTTTCTAC 60.181 52.174 0.00 0.00 30.63 2.59
94 95 4.027437 GAGTCCCCACTGATCTTTCTACT 58.973 47.826 0.00 0.00 30.63 2.57
95 96 4.027437 AGTCCCCACTGATCTTTCTACTC 58.973 47.826 0.00 0.00 0.00 2.59
96 97 3.024547 TCCCCACTGATCTTTCTACTCG 58.975 50.000 0.00 0.00 0.00 4.18
97 98 2.101582 CCCCACTGATCTTTCTACTCGG 59.898 54.545 0.00 0.00 0.00 4.63
98 99 2.101582 CCCACTGATCTTTCTACTCGGG 59.898 54.545 0.00 0.00 0.00 5.14
99 100 2.101582 CCACTGATCTTTCTACTCGGGG 59.898 54.545 0.00 0.00 0.00 5.73
100 101 2.761208 CACTGATCTTTCTACTCGGGGT 59.239 50.000 0.00 0.00 0.00 4.95
101 102 3.025262 ACTGATCTTTCTACTCGGGGTC 58.975 50.000 0.00 0.00 0.00 4.46
102 103 2.022195 TGATCTTTCTACTCGGGGTCG 58.978 52.381 0.00 0.00 37.82 4.79
103 104 0.745468 ATCTTTCTACTCGGGGTCGC 59.255 55.000 0.00 0.00 36.13 5.19
104 105 0.323178 TCTTTCTACTCGGGGTCGCT 60.323 55.000 0.00 0.00 36.13 4.93
105 106 0.179134 CTTTCTACTCGGGGTCGCTG 60.179 60.000 0.00 0.00 36.13 5.18
106 107 2.221906 TTTCTACTCGGGGTCGCTGC 62.222 60.000 0.00 0.00 36.13 5.25
107 108 4.208686 CTACTCGGGGTCGCTGCC 62.209 72.222 0.00 0.00 36.13 4.85
127 128 2.757077 CCTCGGGGAAGCCTTTGT 59.243 61.111 0.00 0.00 33.58 2.83
128 129 1.377333 CCTCGGGGAAGCCTTTGTC 60.377 63.158 0.00 0.00 33.58 3.18
129 130 1.741770 CTCGGGGAAGCCTTTGTCG 60.742 63.158 0.00 0.00 0.00 4.35
130 131 3.431725 CGGGGAAGCCTTTGTCGC 61.432 66.667 0.00 0.00 0.00 5.19
131 132 3.062466 GGGGAAGCCTTTGTCGCC 61.062 66.667 0.00 0.00 39.38 5.54
132 133 3.431725 GGGAAGCCTTTGTCGCCG 61.432 66.667 0.00 0.00 0.00 6.46
133 134 3.431725 GGAAGCCTTTGTCGCCGG 61.432 66.667 0.00 0.00 0.00 6.13
134 135 2.358247 GAAGCCTTTGTCGCCGGA 60.358 61.111 5.05 0.00 0.00 5.14
135 136 2.358737 AAGCCTTTGTCGCCGGAG 60.359 61.111 5.05 0.00 0.00 4.63
136 137 3.178540 AAGCCTTTGTCGCCGGAGT 62.179 57.895 5.05 0.00 0.00 3.85
137 138 3.119096 GCCTTTGTCGCCGGAGTC 61.119 66.667 5.05 0.00 0.00 3.36
138 139 2.434359 CCTTTGTCGCCGGAGTCC 60.434 66.667 5.05 0.00 0.00 3.85
139 140 2.434359 CTTTGTCGCCGGAGTCCC 60.434 66.667 5.05 0.00 0.00 4.46
140 141 2.920912 TTTGTCGCCGGAGTCCCT 60.921 61.111 5.05 0.00 0.00 4.20
141 142 1.601419 CTTTGTCGCCGGAGTCCCTA 61.601 60.000 5.05 0.00 0.00 3.53
142 143 1.880819 TTTGTCGCCGGAGTCCCTAC 61.881 60.000 5.05 0.00 0.00 3.18
143 144 2.753043 GTCGCCGGAGTCCCTACA 60.753 66.667 5.05 0.00 0.00 2.74
144 145 2.439701 TCGCCGGAGTCCCTACAG 60.440 66.667 5.05 0.00 0.00 2.74
145 146 4.208686 CGCCGGAGTCCCTACAGC 62.209 72.222 5.05 0.00 0.00 4.40
146 147 2.760385 GCCGGAGTCCCTACAGCT 60.760 66.667 5.05 0.00 0.00 4.24
147 148 2.359967 GCCGGAGTCCCTACAGCTT 61.360 63.158 5.05 0.00 0.00 3.74
148 149 1.900545 GCCGGAGTCCCTACAGCTTT 61.901 60.000 5.05 0.00 0.00 3.51
149 150 0.175989 CCGGAGTCCCTACAGCTTTC 59.824 60.000 2.80 0.00 0.00 2.62
150 151 1.187087 CGGAGTCCCTACAGCTTTCT 58.813 55.000 2.80 0.00 0.00 2.52
151 152 1.135333 CGGAGTCCCTACAGCTTTCTC 59.865 57.143 2.80 0.00 0.00 2.87
152 153 1.483004 GGAGTCCCTACAGCTTTCTCC 59.517 57.143 0.00 0.00 34.30 3.71
153 154 2.462723 GAGTCCCTACAGCTTTCTCCT 58.537 52.381 0.00 0.00 0.00 3.69
154 155 2.835156 GAGTCCCTACAGCTTTCTCCTT 59.165 50.000 0.00 0.00 0.00 3.36
155 156 2.835156 AGTCCCTACAGCTTTCTCCTTC 59.165 50.000 0.00 0.00 0.00 3.46
156 157 2.567615 GTCCCTACAGCTTTCTCCTTCA 59.432 50.000 0.00 0.00 0.00 3.02
157 158 3.198853 GTCCCTACAGCTTTCTCCTTCAT 59.801 47.826 0.00 0.00 0.00 2.57
158 159 3.452627 TCCCTACAGCTTTCTCCTTCATC 59.547 47.826 0.00 0.00 0.00 2.92
159 160 3.454082 CCCTACAGCTTTCTCCTTCATCT 59.546 47.826 0.00 0.00 0.00 2.90
160 161 4.080638 CCCTACAGCTTTCTCCTTCATCTT 60.081 45.833 0.00 0.00 0.00 2.40
161 162 5.115480 CCTACAGCTTTCTCCTTCATCTTC 58.885 45.833 0.00 0.00 0.00 2.87
162 163 4.906747 ACAGCTTTCTCCTTCATCTTCT 57.093 40.909 0.00 0.00 0.00 2.85
163 164 4.831107 ACAGCTTTCTCCTTCATCTTCTC 58.169 43.478 0.00 0.00 0.00 2.87
164 165 4.190772 CAGCTTTCTCCTTCATCTTCTCC 58.809 47.826 0.00 0.00 0.00 3.71
165 166 3.843027 AGCTTTCTCCTTCATCTTCTCCA 59.157 43.478 0.00 0.00 0.00 3.86
166 167 3.938334 GCTTTCTCCTTCATCTTCTCCAC 59.062 47.826 0.00 0.00 0.00 4.02
167 168 4.512484 CTTTCTCCTTCATCTTCTCCACC 58.488 47.826 0.00 0.00 0.00 4.61
168 169 3.190383 TCTCCTTCATCTTCTCCACCA 57.810 47.619 0.00 0.00 0.00 4.17
169 170 3.729108 TCTCCTTCATCTTCTCCACCAT 58.271 45.455 0.00 0.00 0.00 3.55
170 171 4.883759 TCTCCTTCATCTTCTCCACCATA 58.116 43.478 0.00 0.00 0.00 2.74
171 172 4.898265 TCTCCTTCATCTTCTCCACCATAG 59.102 45.833 0.00 0.00 0.00 2.23
172 173 3.389329 TCCTTCATCTTCTCCACCATAGC 59.611 47.826 0.00 0.00 0.00 2.97
173 174 3.390639 CCTTCATCTTCTCCACCATAGCT 59.609 47.826 0.00 0.00 0.00 3.32
174 175 4.502950 CCTTCATCTTCTCCACCATAGCTC 60.503 50.000 0.00 0.00 0.00 4.09
175 176 2.968574 TCATCTTCTCCACCATAGCTCC 59.031 50.000 0.00 0.00 0.00 4.70
176 177 1.403814 TCTTCTCCACCATAGCTCCG 58.596 55.000 0.00 0.00 0.00 4.63
177 178 0.249657 CTTCTCCACCATAGCTCCGC 60.250 60.000 0.00 0.00 0.00 5.54
178 179 0.687757 TTCTCCACCATAGCTCCGCT 60.688 55.000 0.00 0.00 43.41 5.52
179 180 1.109920 TCTCCACCATAGCTCCGCTC 61.110 60.000 0.00 0.00 40.44 5.03
180 181 2.093537 CTCCACCATAGCTCCGCTCC 62.094 65.000 0.00 0.00 40.44 4.70
181 182 2.028190 CACCATAGCTCCGCTCCG 59.972 66.667 0.00 0.00 40.44 4.63
182 183 2.442272 ACCATAGCTCCGCTCCGT 60.442 61.111 0.00 0.00 40.44 4.69
183 184 2.028190 CCATAGCTCCGCTCCGTG 59.972 66.667 0.00 0.00 40.44 4.94
184 185 2.028190 CATAGCTCCGCTCCGTGG 59.972 66.667 0.00 0.00 40.44 4.94
185 186 2.123854 ATAGCTCCGCTCCGTGGA 60.124 61.111 0.00 0.00 40.44 4.02
197 198 1.486211 TCCGTGGAGGAGAAGATTCC 58.514 55.000 0.00 0.00 45.98 3.01
198 199 0.103208 CCGTGGAGGAGAAGATTCCG 59.897 60.000 0.00 0.00 45.00 4.30
199 200 0.528684 CGTGGAGGAGAAGATTCCGC 60.529 60.000 0.00 0.00 42.29 5.54
201 202 1.068250 GGAGGAGAAGATTCCGCCG 59.932 63.158 0.00 0.00 45.41 6.46
202 203 1.068250 GAGGAGAAGATTCCGCCGG 59.932 63.158 0.00 0.00 42.29 6.13
203 204 1.677637 GAGGAGAAGATTCCGCCGGT 61.678 60.000 1.63 0.00 42.29 5.28
204 205 1.227292 GGAGAAGATTCCGCCGGTC 60.227 63.158 1.63 0.00 0.00 4.79
205 206 1.677637 GGAGAAGATTCCGCCGGTCT 61.678 60.000 1.63 0.00 0.00 3.85
206 207 0.528684 GAGAAGATTCCGCCGGTCTG 60.529 60.000 1.63 0.00 0.00 3.51
207 208 2.125106 AAGATTCCGCCGGTCTGC 60.125 61.111 1.63 0.00 0.00 4.26
218 219 3.379445 GGTCTGCGTCGAGGGGAA 61.379 66.667 7.31 0.00 0.00 3.97
219 220 2.182030 GTCTGCGTCGAGGGGAAG 59.818 66.667 7.31 0.00 0.00 3.46
225 226 4.070552 GTCGAGGGGAAGCGCAGT 62.071 66.667 11.47 0.00 0.00 4.40
226 227 3.760035 TCGAGGGGAAGCGCAGTC 61.760 66.667 11.47 6.33 0.00 3.51
227 228 4.069232 CGAGGGGAAGCGCAGTCA 62.069 66.667 11.47 0.00 0.00 3.41
228 229 2.435059 GAGGGGAAGCGCAGTCAC 60.435 66.667 11.47 7.62 0.00 3.67
229 230 3.959991 GAGGGGAAGCGCAGTCACC 62.960 68.421 21.49 21.49 39.03 4.02
230 231 4.021925 GGGGAAGCGCAGTCACCT 62.022 66.667 21.68 0.00 35.50 4.00
231 232 2.435059 GGGAAGCGCAGTCACCTC 60.435 66.667 11.47 0.00 0.00 3.85
232 233 2.435059 GGAAGCGCAGTCACCTCC 60.435 66.667 11.47 0.00 0.00 4.30
233 234 2.659610 GAAGCGCAGTCACCTCCT 59.340 61.111 11.47 0.00 0.00 3.69
234 235 1.446966 GAAGCGCAGTCACCTCCTC 60.447 63.158 11.47 0.00 0.00 3.71
235 236 2.159819 GAAGCGCAGTCACCTCCTCA 62.160 60.000 11.47 0.00 0.00 3.86
236 237 1.758440 AAGCGCAGTCACCTCCTCAA 61.758 55.000 11.47 0.00 0.00 3.02
237 238 2.029844 GCGCAGTCACCTCCTCAAC 61.030 63.158 0.30 0.00 0.00 3.18
238 239 1.367471 CGCAGTCACCTCCTCAACA 59.633 57.895 0.00 0.00 0.00 3.33
239 240 0.946221 CGCAGTCACCTCCTCAACAC 60.946 60.000 0.00 0.00 0.00 3.32
240 241 0.603975 GCAGTCACCTCCTCAACACC 60.604 60.000 0.00 0.00 0.00 4.16
241 242 0.758734 CAGTCACCTCCTCAACACCA 59.241 55.000 0.00 0.00 0.00 4.17
242 243 0.759346 AGTCACCTCCTCAACACCAC 59.241 55.000 0.00 0.00 0.00 4.16
243 244 0.250338 GTCACCTCCTCAACACCACC 60.250 60.000 0.00 0.00 0.00 4.61
244 245 1.301716 CACCTCCTCAACACCACCG 60.302 63.158 0.00 0.00 0.00 4.94
245 246 1.764854 ACCTCCTCAACACCACCGT 60.765 57.895 0.00 0.00 0.00 4.83
246 247 0.470456 ACCTCCTCAACACCACCGTA 60.470 55.000 0.00 0.00 0.00 4.02
247 248 0.246635 CCTCCTCAACACCACCGTAG 59.753 60.000 0.00 0.00 0.00 3.51
248 249 0.389948 CTCCTCAACACCACCGTAGC 60.390 60.000 0.00 0.00 0.00 3.58
249 250 1.375523 CCTCAACACCACCGTAGCC 60.376 63.158 0.00 0.00 0.00 3.93
250 251 1.369692 CTCAACACCACCGTAGCCA 59.630 57.895 0.00 0.00 0.00 4.75
251 252 0.949105 CTCAACACCACCGTAGCCAC 60.949 60.000 0.00 0.00 0.00 5.01
252 253 1.227704 CAACACCACCGTAGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
253 254 1.227734 AACACCACCGTAGCCACAC 60.228 57.895 0.00 0.00 0.00 3.82
254 255 2.358247 CACCACCGTAGCCACACC 60.358 66.667 0.00 0.00 0.00 4.16
255 256 2.845317 ACCACCGTAGCCACACCA 60.845 61.111 0.00 0.00 0.00 4.17
256 257 2.358247 CCACCGTAGCCACACCAC 60.358 66.667 0.00 0.00 0.00 4.16
257 258 2.358247 CACCGTAGCCACACCACC 60.358 66.667 0.00 0.00 0.00 4.61
258 259 3.633116 ACCGTAGCCACACCACCC 61.633 66.667 0.00 0.00 0.00 4.61
259 260 4.404098 CCGTAGCCACACCACCCC 62.404 72.222 0.00 0.00 0.00 4.95
260 261 4.404098 CGTAGCCACACCACCCCC 62.404 72.222 0.00 0.00 0.00 5.40
261 262 4.404098 GTAGCCACACCACCCCCG 62.404 72.222 0.00 0.00 0.00 5.73
270 271 4.323477 CCACCCCCGCTGTCGAAA 62.323 66.667 0.00 0.00 38.10 3.46
271 272 3.047877 CACCCCCGCTGTCGAAAC 61.048 66.667 0.00 0.00 38.10 2.78
272 273 4.324991 ACCCCCGCTGTCGAAACC 62.325 66.667 0.00 0.00 38.10 3.27
274 275 4.016706 CCCCGCTGTCGAAACCCT 62.017 66.667 0.00 0.00 38.10 4.34
275 276 2.652095 CCCCGCTGTCGAAACCCTA 61.652 63.158 0.00 0.00 38.10 3.53
276 277 1.294138 CCCGCTGTCGAAACCCTAA 59.706 57.895 0.00 0.00 38.10 2.69
277 278 1.017701 CCCGCTGTCGAAACCCTAAC 61.018 60.000 0.00 0.00 38.10 2.34
278 279 1.017701 CCGCTGTCGAAACCCTAACC 61.018 60.000 0.00 0.00 38.10 2.85
279 280 1.017701 CGCTGTCGAAACCCTAACCC 61.018 60.000 0.00 0.00 38.10 4.11
280 281 0.323957 GCTGTCGAAACCCTAACCCT 59.676 55.000 0.00 0.00 0.00 4.34
281 282 1.551883 GCTGTCGAAACCCTAACCCTA 59.448 52.381 0.00 0.00 0.00 3.53
282 283 2.418334 GCTGTCGAAACCCTAACCCTAG 60.418 54.545 0.00 0.00 0.00 3.02
283 284 1.551883 TGTCGAAACCCTAACCCTAGC 59.448 52.381 0.00 0.00 0.00 3.42
284 285 0.819582 TCGAAACCCTAACCCTAGCG 59.180 55.000 0.00 0.00 0.00 4.26
285 286 0.808847 CGAAACCCTAACCCTAGCGC 60.809 60.000 0.00 0.00 0.00 5.92
286 287 0.540454 GAAACCCTAACCCTAGCGCT 59.460 55.000 17.26 17.26 0.00 5.92
287 288 0.252197 AAACCCTAACCCTAGCGCTG 59.748 55.000 22.90 10.13 0.00 5.18
288 289 0.616679 AACCCTAACCCTAGCGCTGA 60.617 55.000 22.90 3.06 0.00 4.26
289 290 1.043673 ACCCTAACCCTAGCGCTGAG 61.044 60.000 22.90 11.14 0.00 3.35
290 291 0.755698 CCCTAACCCTAGCGCTGAGA 60.756 60.000 22.90 0.00 0.00 3.27
291 292 0.671251 CCTAACCCTAGCGCTGAGAG 59.329 60.000 22.90 9.77 0.00 3.20
292 293 1.681538 CTAACCCTAGCGCTGAGAGA 58.318 55.000 22.90 0.00 0.00 3.10
293 294 1.606668 CTAACCCTAGCGCTGAGAGAG 59.393 57.143 22.90 8.90 0.00 3.20
294 295 0.033991 AACCCTAGCGCTGAGAGAGA 60.034 55.000 22.90 0.00 0.00 3.10
295 296 0.184933 ACCCTAGCGCTGAGAGAGAT 59.815 55.000 22.90 0.00 0.00 2.75
296 297 0.881118 CCCTAGCGCTGAGAGAGATC 59.119 60.000 22.90 0.00 0.00 2.75
297 298 0.516877 CCTAGCGCTGAGAGAGATCG 59.483 60.000 22.90 0.00 0.00 3.69
298 299 0.110238 CTAGCGCTGAGAGAGATCGC 60.110 60.000 22.90 0.00 45.34 4.58
299 300 1.511318 TAGCGCTGAGAGAGATCGCC 61.511 60.000 22.90 0.00 46.04 5.54
300 301 2.334653 CGCTGAGAGAGATCGCCC 59.665 66.667 0.00 0.00 0.00 6.13
301 302 2.484928 CGCTGAGAGAGATCGCCCA 61.485 63.158 0.00 0.00 0.00 5.36
302 303 1.363443 GCTGAGAGAGATCGCCCAG 59.637 63.158 0.00 0.14 0.00 4.45
303 304 1.363443 CTGAGAGAGATCGCCCAGC 59.637 63.158 0.00 0.00 0.00 4.85
304 305 1.380380 TGAGAGAGATCGCCCAGCA 60.380 57.895 0.00 0.00 0.00 4.41
305 306 0.972471 TGAGAGAGATCGCCCAGCAA 60.972 55.000 0.00 0.00 0.00 3.91
306 307 0.392336 GAGAGAGATCGCCCAGCAAT 59.608 55.000 0.00 0.00 0.00 3.56
307 308 0.835941 AGAGAGATCGCCCAGCAATT 59.164 50.000 0.00 0.00 0.00 2.32
308 309 0.942962 GAGAGATCGCCCAGCAATTG 59.057 55.000 0.00 0.00 0.00 2.32
309 310 1.099879 AGAGATCGCCCAGCAATTGC 61.100 55.000 23.05 23.05 42.49 3.56
310 311 2.068277 GAGATCGCCCAGCAATTGCC 62.068 60.000 26.45 10.42 43.38 4.52
311 312 2.043652 ATCGCCCAGCAATTGCCT 60.044 55.556 26.45 11.39 43.38 4.75
312 313 2.068277 GATCGCCCAGCAATTGCCTC 62.068 60.000 26.45 11.98 43.38 4.70
313 314 4.183686 CGCCCAGCAATTGCCTCG 62.184 66.667 26.45 19.12 43.38 4.63
314 315 4.503314 GCCCAGCAATTGCCTCGC 62.503 66.667 26.45 19.99 43.38 5.03
315 316 3.830192 CCCAGCAATTGCCTCGCC 61.830 66.667 26.45 0.00 43.38 5.54
316 317 3.063704 CCAGCAATTGCCTCGCCA 61.064 61.111 26.45 0.00 43.38 5.69
317 318 2.488355 CAGCAATTGCCTCGCCAG 59.512 61.111 26.45 4.80 43.38 4.85
318 319 2.034687 AGCAATTGCCTCGCCAGT 59.965 55.556 26.45 2.53 43.38 4.00
319 320 2.042831 AGCAATTGCCTCGCCAGTC 61.043 57.895 26.45 0.00 43.38 3.51
320 321 2.787249 CAATTGCCTCGCCAGTCG 59.213 61.111 0.00 0.00 40.15 4.18
321 322 3.127533 AATTGCCTCGCCAGTCGC 61.128 61.111 0.00 0.00 38.27 5.19
327 328 3.458163 CTCGCCAGTCGCCCCTTA 61.458 66.667 0.00 0.00 38.27 2.69
328 329 3.432051 CTCGCCAGTCGCCCCTTAG 62.432 68.421 0.00 0.00 38.27 2.18
347 348 3.311710 GTTTCGCAACGTCGTGGA 58.688 55.556 3.27 0.00 0.00 4.02
348 349 1.083847 GTTTCGCAACGTCGTGGAC 60.084 57.895 3.27 0.00 0.00 4.02
349 350 2.239124 TTTCGCAACGTCGTGGACC 61.239 57.895 3.27 0.00 0.00 4.46
350 351 4.651008 TCGCAACGTCGTGGACCC 62.651 66.667 3.27 0.00 0.00 4.46
352 353 4.651008 GCAACGTCGTGGACCCGA 62.651 66.667 3.27 1.45 33.79 5.14
380 381 5.702670 ACAAATCAAAGATCTCATCGTGTGT 59.297 36.000 0.00 0.00 0.00 3.72
385 386 5.047731 TCAAAGATCTCATCGTGTGTCTTCT 60.048 40.000 0.00 0.00 0.00 2.85
393 394 0.985549 CGTGTGTCTTCTTCGCTAGC 59.014 55.000 4.06 4.06 0.00 3.42
396 397 1.343142 TGTGTCTTCTTCGCTAGCCAA 59.657 47.619 9.66 0.93 0.00 4.52
408 409 1.927895 CTAGCCAATTCGTCTTCGCT 58.072 50.000 0.00 0.00 36.96 4.93
526 543 5.389098 GCGGCAATATGTATACTAAACGGTG 60.389 44.000 4.17 0.00 0.00 4.94
558 578 4.815846 TGAATCCATCCATGTACATGTTCG 59.184 41.667 29.25 17.14 37.11 3.95
567 587 2.967362 TGTACATGTTCGTGATGACCC 58.033 47.619 2.30 0.00 0.00 4.46
580 600 2.842936 GACCCGATCCATCCCCGT 60.843 66.667 0.00 0.00 0.00 5.28
603 624 2.039418 CCCCCAAAGCCCTATTTTAGC 58.961 52.381 0.00 0.00 0.00 3.09
608 629 4.142160 CCCAAAGCCCTATTTTAGCAGTTC 60.142 45.833 0.00 0.00 0.00 3.01
668 691 7.307550 TCCATCCATGATCCATCCTAATTTTT 58.692 34.615 0.00 0.00 0.00 1.94
807 834 4.527509 TTGACTAGTCTCTTTGAGCAGG 57.472 45.455 23.01 0.00 0.00 4.85
820 849 4.589216 TTGAGCAGGTGAAGAAATTTGG 57.411 40.909 0.00 0.00 0.00 3.28
837 866 5.959583 ATTTGGAAAGGTGTTTGGGTTTA 57.040 34.783 0.00 0.00 0.00 2.01
885 928 4.588951 TCCTTGGATGATAGCAATCTACGT 59.411 41.667 0.00 0.00 32.93 3.57
935 980 9.118300 AGCTTTTTCTAATGATAACTCATCTGG 57.882 33.333 0.00 0.00 41.34 3.86
963 1008 7.664082 TGATCTTGAAGATTTTGTCTCTGAC 57.336 36.000 9.35 0.00 34.53 3.51
976 1021 4.832248 TGTCTCTGACTTGAAAGTGTTGT 58.168 39.130 0.00 0.00 39.88 3.32
1069 1118 7.122650 GCTATCTAGATGTCTCTCTTGCCTATT 59.877 40.741 15.79 0.00 32.66 1.73
1083 1133 2.103094 TGCCTATTGGATCCTCTCAACG 59.897 50.000 14.23 0.00 34.57 4.10
1105 1155 3.126831 GTGCATGTGTCTATAGCCTCAC 58.873 50.000 12.37 12.37 0.00 3.51
1106 1156 3.033909 TGCATGTGTCTATAGCCTCACT 58.966 45.455 16.97 6.48 0.00 3.41
1193 1243 4.337274 CAGATTGAATGACTTGGCTATGCA 59.663 41.667 0.00 0.00 0.00 3.96
1211 1261 3.273434 TGCACTGCATTGAGAAGGATAC 58.727 45.455 8.44 0.00 31.71 2.24
1269 1319 1.169661 TTGCATCAAGAAACGCCCGT 61.170 50.000 0.00 0.00 0.00 5.28
1440 1498 3.128349 TCTCAAACTAAAGACGTGTGGC 58.872 45.455 0.00 0.00 0.00 5.01
1450 1508 1.670811 AGACGTGTGGCTGAAAGTTTG 59.329 47.619 0.00 0.00 35.30 2.93
1534 1616 2.271800 CATGTCCTCAAGTTCGCCTAC 58.728 52.381 0.00 0.00 0.00 3.18
1535 1617 1.334160 TGTCCTCAAGTTCGCCTACA 58.666 50.000 0.00 0.00 0.00 2.74
1540 1622 0.685097 TCAAGTTCGCCTACAGCCTT 59.315 50.000 0.00 0.00 38.78 4.35
1551 1633 3.679389 CCTACAGCCTTCTGAAACACAT 58.321 45.455 0.00 0.00 42.95 3.21
1656 1738 4.371786 CGGCGCCATGTCTATGATATTAT 58.628 43.478 28.98 0.00 36.36 1.28
1698 1780 8.553696 CGAAAACATGAAGATCATCATATGACA 58.446 33.333 12.81 0.00 43.01 3.58
1719 1801 3.055385 CAGAGGTGACCCGAATAGGAAAA 60.055 47.826 0.00 0.00 45.00 2.29
1740 1822 2.188817 GATGAGGGGTGTAGTTCCACT 58.811 52.381 0.00 0.00 41.95 4.00
1769 1851 0.035056 AAGGCCGGATGTTGAGAAGG 60.035 55.000 5.05 0.00 0.00 3.46
1826 1908 1.227943 AGGCATATGCGCGTGGAAT 60.228 52.632 21.04 0.00 43.26 3.01
1977 2060 6.782494 AGGTTATCAAATTCCTTCCTGTTGTT 59.218 34.615 0.00 0.00 0.00 2.83
1989 2072 4.610605 TCCTGTTGTTCGTTTGGAGATA 57.389 40.909 0.00 0.00 0.00 1.98
1997 2080 5.000591 TGTTCGTTTGGAGATAAGCAATGA 58.999 37.500 0.00 0.00 0.00 2.57
2069 2152 4.499023 CGTCGGATTTGCGGCGTG 62.499 66.667 10.32 0.00 0.00 5.34
2262 2349 1.311859 CAGGCATGACAAGTGTGTGT 58.688 50.000 0.00 0.00 38.41 3.72
2266 2353 2.212652 GCATGACAAGTGTGTGTCTCA 58.787 47.619 0.00 0.00 46.70 3.27
2267 2354 2.810274 GCATGACAAGTGTGTGTCTCAT 59.190 45.455 0.00 0.00 46.70 2.90
2272 2359 6.785488 TGACAAGTGTGTGTCTCATATTTC 57.215 37.500 6.85 0.00 46.70 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.801631 CGAGACTGGGAGGGATGGC 61.802 68.421 0.00 0.00 0.00 4.40
1 2 2.801631 GCGAGACTGGGAGGGATGG 61.802 68.421 0.00 0.00 0.00 3.51
2 3 1.760086 AGCGAGACTGGGAGGGATG 60.760 63.158 0.00 0.00 0.00 3.51
3 4 1.760086 CAGCGAGACTGGGAGGGAT 60.760 63.158 0.00 0.00 43.19 3.85
4 5 2.363018 CAGCGAGACTGGGAGGGA 60.363 66.667 0.00 0.00 43.19 4.20
12 13 1.889454 CAAGCCTCTCAGCGAGACT 59.111 57.895 4.47 0.12 42.62 3.24
13 14 1.809209 GCAAGCCTCTCAGCGAGAC 60.809 63.158 4.47 0.00 42.62 3.36
14 15 2.223200 CTGCAAGCCTCTCAGCGAGA 62.223 60.000 7.79 7.79 42.62 4.04
15 16 1.810441 CTGCAAGCCTCTCAGCGAG 60.810 63.158 0.00 0.00 39.57 5.03
16 17 2.104572 AACTGCAAGCCTCTCAGCGA 62.105 55.000 0.00 0.00 37.60 4.93
17 18 1.670406 AACTGCAAGCCTCTCAGCG 60.670 57.895 0.00 0.00 37.60 5.18
18 19 1.584380 CCAACTGCAAGCCTCTCAGC 61.584 60.000 0.00 0.00 37.60 4.26
19 20 0.035881 TCCAACTGCAAGCCTCTCAG 59.964 55.000 0.00 0.00 37.60 3.35
20 21 0.694771 ATCCAACTGCAAGCCTCTCA 59.305 50.000 0.00 0.00 37.60 3.27
21 22 1.377536 GATCCAACTGCAAGCCTCTC 58.622 55.000 0.00 0.00 37.60 3.20
22 23 0.034670 GGATCCAACTGCAAGCCTCT 60.035 55.000 6.95 0.00 37.60 3.69
23 24 1.372087 CGGATCCAACTGCAAGCCTC 61.372 60.000 13.41 0.00 37.60 4.70
24 25 1.377725 CGGATCCAACTGCAAGCCT 60.378 57.895 13.41 0.00 37.60 4.58
25 26 2.409870 CCGGATCCAACTGCAAGCC 61.410 63.158 13.41 0.00 37.60 4.35
26 27 3.056313 GCCGGATCCAACTGCAAGC 62.056 63.158 13.41 0.00 37.60 4.01
27 28 2.753966 CGCCGGATCCAACTGCAAG 61.754 63.158 13.41 0.00 42.29 4.01
28 29 2.745884 CGCCGGATCCAACTGCAA 60.746 61.111 13.41 0.00 0.00 4.08
29 30 3.950794 GACGCCGGATCCAACTGCA 62.951 63.158 13.41 0.00 0.00 4.41
30 31 3.195698 GACGCCGGATCCAACTGC 61.196 66.667 13.41 7.49 0.00 4.40
31 32 1.079127 AAGACGCCGGATCCAACTG 60.079 57.895 13.41 0.40 0.00 3.16
32 33 1.079127 CAAGACGCCGGATCCAACT 60.079 57.895 13.41 0.05 0.00 3.16
33 34 2.750888 GCAAGACGCCGGATCCAAC 61.751 63.158 13.41 1.28 32.94 3.77
34 35 2.435938 GCAAGACGCCGGATCCAA 60.436 61.111 13.41 0.00 32.94 3.53
35 36 3.247056 TTGCAAGACGCCGGATCCA 62.247 57.895 13.41 0.00 41.33 3.41
36 37 2.435938 TTGCAAGACGCCGGATCC 60.436 61.111 5.05 0.00 41.33 3.36
37 38 1.741770 ACTTGCAAGACGCCGGATC 60.742 57.895 32.50 0.64 41.33 3.36
38 39 2.034879 CACTTGCAAGACGCCGGAT 61.035 57.895 32.50 4.68 41.33 4.18
39 40 2.449031 ATCACTTGCAAGACGCCGGA 62.449 55.000 32.50 17.79 41.33 5.14
40 41 1.577328 AATCACTTGCAAGACGCCGG 61.577 55.000 32.50 13.56 41.33 6.13
41 42 0.453282 CAATCACTTGCAAGACGCCG 60.453 55.000 32.50 13.55 41.33 6.46
42 43 0.109597 CCAATCACTTGCAAGACGCC 60.110 55.000 32.50 0.00 41.33 5.68
43 44 0.874390 TCCAATCACTTGCAAGACGC 59.126 50.000 32.50 0.00 42.89 5.19
44 45 2.158449 GTCTCCAATCACTTGCAAGACG 59.842 50.000 32.50 21.43 35.64 4.18
45 46 3.406764 AGTCTCCAATCACTTGCAAGAC 58.593 45.455 32.50 16.50 40.44 3.01
46 47 3.777106 AGTCTCCAATCACTTGCAAGA 57.223 42.857 32.50 12.33 0.00 3.02
47 48 3.817084 TCAAGTCTCCAATCACTTGCAAG 59.183 43.478 24.84 24.84 46.19 4.01
48 49 3.817084 CTCAAGTCTCCAATCACTTGCAA 59.183 43.478 0.00 0.00 46.19 4.08
49 50 3.405831 CTCAAGTCTCCAATCACTTGCA 58.594 45.455 6.89 0.00 46.19 4.08
50 51 2.161211 GCTCAAGTCTCCAATCACTTGC 59.839 50.000 6.89 0.00 46.19 4.01
52 53 2.300152 TCGCTCAAGTCTCCAATCACTT 59.700 45.455 0.00 0.00 32.87 3.16
53 54 1.895798 TCGCTCAAGTCTCCAATCACT 59.104 47.619 0.00 0.00 0.00 3.41
54 55 2.266554 CTCGCTCAAGTCTCCAATCAC 58.733 52.381 0.00 0.00 0.00 3.06
55 56 1.895798 ACTCGCTCAAGTCTCCAATCA 59.104 47.619 0.00 0.00 0.00 2.57
56 57 2.535331 GACTCGCTCAAGTCTCCAATC 58.465 52.381 4.14 0.00 42.01 2.67
57 58 1.205893 GGACTCGCTCAAGTCTCCAAT 59.794 52.381 9.66 0.00 44.21 3.16
58 59 0.603569 GGACTCGCTCAAGTCTCCAA 59.396 55.000 9.66 0.00 44.21 3.53
59 60 1.251527 GGGACTCGCTCAAGTCTCCA 61.252 60.000 9.66 0.00 44.21 3.86
60 61 1.513622 GGGACTCGCTCAAGTCTCC 59.486 63.158 9.66 6.62 44.21 3.71
61 62 1.251527 TGGGGACTCGCTCAAGTCTC 61.252 60.000 9.66 6.45 44.60 3.36
62 63 1.228894 TGGGGACTCGCTCAAGTCT 60.229 57.895 9.66 0.00 44.21 3.24
63 64 1.079750 GTGGGGACTCGCTCAAGTC 60.080 63.158 3.00 3.00 44.08 3.01
64 65 1.534235 AGTGGGGACTCGCTCAAGT 60.534 57.895 0.00 0.00 0.00 3.16
65 66 1.079543 CAGTGGGGACTCGCTCAAG 60.080 63.158 0.00 0.00 0.00 3.02
66 67 0.904865 ATCAGTGGGGACTCGCTCAA 60.905 55.000 0.00 0.00 0.00 3.02
67 68 1.305297 ATCAGTGGGGACTCGCTCA 60.305 57.895 0.00 0.00 0.00 4.26
68 69 1.040339 AGATCAGTGGGGACTCGCTC 61.040 60.000 0.00 0.00 0.00 5.03
69 70 0.616111 AAGATCAGTGGGGACTCGCT 60.616 55.000 0.00 0.00 0.00 4.93
70 71 0.250513 AAAGATCAGTGGGGACTCGC 59.749 55.000 0.00 0.00 0.00 5.03
71 72 1.827969 AGAAAGATCAGTGGGGACTCG 59.172 52.381 0.00 0.00 0.00 4.18
72 73 4.027437 AGTAGAAAGATCAGTGGGGACTC 58.973 47.826 0.00 0.00 0.00 3.36
73 74 4.027437 GAGTAGAAAGATCAGTGGGGACT 58.973 47.826 0.00 0.00 0.00 3.85
74 75 3.181485 CGAGTAGAAAGATCAGTGGGGAC 60.181 52.174 0.00 0.00 0.00 4.46
75 76 3.024547 CGAGTAGAAAGATCAGTGGGGA 58.975 50.000 0.00 0.00 0.00 4.81
76 77 2.101582 CCGAGTAGAAAGATCAGTGGGG 59.898 54.545 0.00 0.00 0.00 4.96
77 78 2.101582 CCCGAGTAGAAAGATCAGTGGG 59.898 54.545 0.00 0.00 0.00 4.61
78 79 2.101582 CCCCGAGTAGAAAGATCAGTGG 59.898 54.545 0.00 0.00 0.00 4.00
79 80 2.761208 ACCCCGAGTAGAAAGATCAGTG 59.239 50.000 0.00 0.00 0.00 3.66
80 81 3.025262 GACCCCGAGTAGAAAGATCAGT 58.975 50.000 0.00 0.00 0.00 3.41
81 82 2.033550 CGACCCCGAGTAGAAAGATCAG 59.966 54.545 0.00 0.00 38.22 2.90
82 83 2.022195 CGACCCCGAGTAGAAAGATCA 58.978 52.381 0.00 0.00 38.22 2.92
83 84 1.269154 GCGACCCCGAGTAGAAAGATC 60.269 57.143 0.00 0.00 38.22 2.75
84 85 0.745468 GCGACCCCGAGTAGAAAGAT 59.255 55.000 0.00 0.00 38.22 2.40
85 86 0.323178 AGCGACCCCGAGTAGAAAGA 60.323 55.000 0.00 0.00 38.22 2.52
86 87 0.179134 CAGCGACCCCGAGTAGAAAG 60.179 60.000 0.00 0.00 38.22 2.62
87 88 1.888018 CAGCGACCCCGAGTAGAAA 59.112 57.895 0.00 0.00 38.22 2.52
88 89 2.707849 GCAGCGACCCCGAGTAGAA 61.708 63.158 0.00 0.00 38.22 2.10
89 90 3.138798 GCAGCGACCCCGAGTAGA 61.139 66.667 0.00 0.00 38.22 2.59
90 91 4.208686 GGCAGCGACCCCGAGTAG 62.209 72.222 0.00 0.00 38.22 2.57
108 109 4.048470 AAAGGCTTCCCCGAGGGC 62.048 66.667 0.00 0.00 43.94 5.19
109 110 2.044946 CAAAGGCTTCCCCGAGGG 60.045 66.667 0.00 0.00 46.11 4.30
110 111 1.377333 GACAAAGGCTTCCCCGAGG 60.377 63.158 0.00 0.00 39.21 4.63
111 112 1.741770 CGACAAAGGCTTCCCCGAG 60.742 63.158 0.00 0.00 39.21 4.63
112 113 2.345991 CGACAAAGGCTTCCCCGA 59.654 61.111 0.00 0.00 39.21 5.14
113 114 3.431725 GCGACAAAGGCTTCCCCG 61.432 66.667 0.00 5.50 39.21 5.73
114 115 3.062466 GGCGACAAAGGCTTCCCC 61.062 66.667 0.00 0.00 0.00 4.81
115 116 3.431725 CGGCGACAAAGGCTTCCC 61.432 66.667 0.00 0.00 34.19 3.97
116 117 3.431725 CCGGCGACAAAGGCTTCC 61.432 66.667 9.30 0.00 34.19 3.46
117 118 2.358247 TCCGGCGACAAAGGCTTC 60.358 61.111 9.30 0.00 34.19 3.86
118 119 2.358737 CTCCGGCGACAAAGGCTT 60.359 61.111 9.30 0.00 34.19 4.35
119 120 3.591254 GACTCCGGCGACAAAGGCT 62.591 63.158 9.30 0.00 34.19 4.58
120 121 3.119096 GACTCCGGCGACAAAGGC 61.119 66.667 9.30 0.00 0.00 4.35
121 122 2.434359 GGACTCCGGCGACAAAGG 60.434 66.667 9.30 0.00 0.00 3.11
122 123 1.601419 TAGGGACTCCGGCGACAAAG 61.601 60.000 9.30 2.50 41.75 2.77
123 124 1.607178 TAGGGACTCCGGCGACAAA 60.607 57.895 9.30 0.00 41.75 2.83
124 125 2.036098 TAGGGACTCCGGCGACAA 59.964 61.111 9.30 0.00 41.75 3.18
125 126 2.753043 GTAGGGACTCCGGCGACA 60.753 66.667 9.30 0.00 41.75 4.35
126 127 2.753043 TGTAGGGACTCCGGCGAC 60.753 66.667 9.30 0.00 41.75 5.19
127 128 2.439701 CTGTAGGGACTCCGGCGA 60.440 66.667 9.30 0.00 41.75 5.54
128 129 4.208686 GCTGTAGGGACTCCGGCG 62.209 72.222 0.00 0.00 36.83 6.46
130 131 0.175989 GAAAGCTGTAGGGACTCCGG 59.824 60.000 0.00 0.00 41.75 5.14
131 132 1.135333 GAGAAAGCTGTAGGGACTCCG 59.865 57.143 0.00 0.00 41.75 4.63
132 133 1.483004 GGAGAAAGCTGTAGGGACTCC 59.517 57.143 0.00 0.00 41.75 3.85
133 134 2.462723 AGGAGAAAGCTGTAGGGACTC 58.537 52.381 0.00 0.00 41.75 3.36
134 135 2.632763 AGGAGAAAGCTGTAGGGACT 57.367 50.000 0.00 0.00 46.37 3.85
135 136 2.567615 TGAAGGAGAAAGCTGTAGGGAC 59.432 50.000 0.00 0.00 0.00 4.46
136 137 2.902608 TGAAGGAGAAAGCTGTAGGGA 58.097 47.619 0.00 0.00 0.00 4.20
137 138 3.454082 AGATGAAGGAGAAAGCTGTAGGG 59.546 47.826 0.00 0.00 0.00 3.53
138 139 4.751767 AGATGAAGGAGAAAGCTGTAGG 57.248 45.455 0.00 0.00 0.00 3.18
139 140 5.976458 AGAAGATGAAGGAGAAAGCTGTAG 58.024 41.667 0.00 0.00 0.00 2.74
140 141 5.105146 GGAGAAGATGAAGGAGAAAGCTGTA 60.105 44.000 0.00 0.00 0.00 2.74
141 142 4.323409 GGAGAAGATGAAGGAGAAAGCTGT 60.323 45.833 0.00 0.00 0.00 4.40
142 143 4.190772 GGAGAAGATGAAGGAGAAAGCTG 58.809 47.826 0.00 0.00 0.00 4.24
143 144 3.843027 TGGAGAAGATGAAGGAGAAAGCT 59.157 43.478 0.00 0.00 0.00 3.74
144 145 3.938334 GTGGAGAAGATGAAGGAGAAAGC 59.062 47.826 0.00 0.00 0.00 3.51
145 146 4.019860 TGGTGGAGAAGATGAAGGAGAAAG 60.020 45.833 0.00 0.00 0.00 2.62
146 147 3.909995 TGGTGGAGAAGATGAAGGAGAAA 59.090 43.478 0.00 0.00 0.00 2.52
147 148 3.520696 TGGTGGAGAAGATGAAGGAGAA 58.479 45.455 0.00 0.00 0.00 2.87
148 149 3.190383 TGGTGGAGAAGATGAAGGAGA 57.810 47.619 0.00 0.00 0.00 3.71
149 150 4.502950 GCTATGGTGGAGAAGATGAAGGAG 60.503 50.000 0.00 0.00 0.00 3.69
150 151 3.389329 GCTATGGTGGAGAAGATGAAGGA 59.611 47.826 0.00 0.00 0.00 3.36
151 152 3.390639 AGCTATGGTGGAGAAGATGAAGG 59.609 47.826 0.00 0.00 0.00 3.46
152 153 4.502950 GGAGCTATGGTGGAGAAGATGAAG 60.503 50.000 0.00 0.00 0.00 3.02
153 154 3.389329 GGAGCTATGGTGGAGAAGATGAA 59.611 47.826 0.00 0.00 0.00 2.57
154 155 2.968574 GGAGCTATGGTGGAGAAGATGA 59.031 50.000 0.00 0.00 0.00 2.92
155 156 2.288702 CGGAGCTATGGTGGAGAAGATG 60.289 54.545 0.00 0.00 0.00 2.90
156 157 1.967066 CGGAGCTATGGTGGAGAAGAT 59.033 52.381 0.00 0.00 0.00 2.40
157 158 1.403814 CGGAGCTATGGTGGAGAAGA 58.596 55.000 0.00 0.00 0.00 2.87
158 159 3.976339 CGGAGCTATGGTGGAGAAG 57.024 57.895 0.00 0.00 0.00 2.85
178 179 1.486211 GGAATCTTCTCCTCCACGGA 58.514 55.000 0.00 0.00 40.30 4.69
179 180 0.103208 CGGAATCTTCTCCTCCACGG 59.897 60.000 0.00 0.00 32.82 4.94
180 181 0.528684 GCGGAATCTTCTCCTCCACG 60.529 60.000 0.00 0.00 32.82 4.94
181 182 0.179070 GGCGGAATCTTCTCCTCCAC 60.179 60.000 0.00 0.00 39.75 4.02
182 183 1.676678 CGGCGGAATCTTCTCCTCCA 61.677 60.000 0.00 0.00 39.94 3.86
183 184 1.068250 CGGCGGAATCTTCTCCTCC 59.932 63.158 0.00 0.00 37.05 4.30
184 185 1.068250 CCGGCGGAATCTTCTCCTC 59.932 63.158 24.41 0.00 32.82 3.71
185 186 1.677637 GACCGGCGGAATCTTCTCCT 61.678 60.000 35.78 5.26 32.82 3.69
186 187 1.227292 GACCGGCGGAATCTTCTCC 60.227 63.158 35.78 5.68 0.00 3.71
187 188 0.528684 CAGACCGGCGGAATCTTCTC 60.529 60.000 35.78 17.90 0.00 2.87
188 189 1.517832 CAGACCGGCGGAATCTTCT 59.482 57.895 35.78 21.69 0.00 2.85
189 190 2.174319 GCAGACCGGCGGAATCTTC 61.174 63.158 35.78 19.53 0.00 2.87
190 191 2.125106 GCAGACCGGCGGAATCTT 60.125 61.111 35.78 9.95 0.00 2.40
201 202 3.358076 CTTCCCCTCGACGCAGACC 62.358 68.421 0.00 0.00 0.00 3.85
202 203 2.182030 CTTCCCCTCGACGCAGAC 59.818 66.667 0.00 0.00 0.00 3.51
203 204 3.760035 GCTTCCCCTCGACGCAGA 61.760 66.667 0.00 0.00 35.83 4.26
208 209 3.991536 GACTGCGCTTCCCCTCGAC 62.992 68.421 9.73 0.00 0.00 4.20
209 210 3.760035 GACTGCGCTTCCCCTCGA 61.760 66.667 9.73 0.00 0.00 4.04
210 211 4.069232 TGACTGCGCTTCCCCTCG 62.069 66.667 9.73 0.00 0.00 4.63
211 212 2.435059 GTGACTGCGCTTCCCCTC 60.435 66.667 9.73 0.00 0.00 4.30
212 213 4.021925 GGTGACTGCGCTTCCCCT 62.022 66.667 9.73 0.00 0.00 4.79
213 214 3.959991 GAGGTGACTGCGCTTCCCC 62.960 68.421 9.73 5.94 44.43 4.81
214 215 2.435059 GAGGTGACTGCGCTTCCC 60.435 66.667 9.73 8.71 44.43 3.97
215 216 2.435059 GGAGGTGACTGCGCTTCC 60.435 66.667 9.73 3.87 44.43 3.46
222 223 0.758734 TGGTGTTGAGGAGGTGACTG 59.241 55.000 0.00 0.00 44.43 3.51
224 225 0.250338 GGTGGTGTTGAGGAGGTGAC 60.250 60.000 0.00 0.00 0.00 3.67
225 226 1.754380 CGGTGGTGTTGAGGAGGTGA 61.754 60.000 0.00 0.00 0.00 4.02
226 227 1.301716 CGGTGGTGTTGAGGAGGTG 60.302 63.158 0.00 0.00 0.00 4.00
227 228 0.470456 TACGGTGGTGTTGAGGAGGT 60.470 55.000 0.00 0.00 0.00 3.85
228 229 0.246635 CTACGGTGGTGTTGAGGAGG 59.753 60.000 0.00 0.00 0.00 4.30
229 230 0.389948 GCTACGGTGGTGTTGAGGAG 60.390 60.000 0.00 0.00 0.00 3.69
230 231 1.669440 GCTACGGTGGTGTTGAGGA 59.331 57.895 0.00 0.00 0.00 3.71
231 232 1.375523 GGCTACGGTGGTGTTGAGG 60.376 63.158 0.00 0.00 0.00 3.86
232 233 0.949105 GTGGCTACGGTGGTGTTGAG 60.949 60.000 0.00 0.00 0.00 3.02
233 234 1.070105 GTGGCTACGGTGGTGTTGA 59.930 57.895 0.00 0.00 0.00 3.18
234 235 1.227704 TGTGGCTACGGTGGTGTTG 60.228 57.895 0.00 0.00 0.00 3.33
235 236 1.227734 GTGTGGCTACGGTGGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
236 237 2.424302 GTGTGGCTACGGTGGTGT 59.576 61.111 0.00 0.00 0.00 4.16
237 238 2.358247 GGTGTGGCTACGGTGGTG 60.358 66.667 0.00 0.00 0.00 4.17
238 239 2.845317 TGGTGTGGCTACGGTGGT 60.845 61.111 0.00 0.00 0.00 4.16
239 240 2.358247 GTGGTGTGGCTACGGTGG 60.358 66.667 0.00 0.00 0.00 4.61
240 241 2.358247 GGTGGTGTGGCTACGGTG 60.358 66.667 0.00 0.00 0.00 4.94
241 242 3.633116 GGGTGGTGTGGCTACGGT 61.633 66.667 0.00 0.00 0.00 4.83
242 243 4.404098 GGGGTGGTGTGGCTACGG 62.404 72.222 0.00 0.00 0.00 4.02
243 244 4.404098 GGGGGTGGTGTGGCTACG 62.404 72.222 0.00 0.00 0.00 3.51
244 245 4.404098 CGGGGGTGGTGTGGCTAC 62.404 72.222 0.00 0.00 0.00 3.58
253 254 4.323477 TTTCGACAGCGGGGGTGG 62.323 66.667 0.00 0.00 38.28 4.61
254 255 3.047877 GTTTCGACAGCGGGGGTG 61.048 66.667 0.00 0.00 38.28 4.61
255 256 4.324991 GGTTTCGACAGCGGGGGT 62.325 66.667 0.00 0.00 38.28 4.95
257 258 2.175035 TTAGGGTTTCGACAGCGGGG 62.175 60.000 0.00 0.00 38.28 5.73
258 259 1.017701 GTTAGGGTTTCGACAGCGGG 61.018 60.000 0.00 0.00 38.28 6.13
259 260 1.017701 GGTTAGGGTTTCGACAGCGG 61.018 60.000 0.00 0.00 38.28 5.52
260 261 1.017701 GGGTTAGGGTTTCGACAGCG 61.018 60.000 0.00 0.00 39.35 5.18
261 262 0.323957 AGGGTTAGGGTTTCGACAGC 59.676 55.000 0.00 0.00 0.00 4.40
262 263 2.418334 GCTAGGGTTAGGGTTTCGACAG 60.418 54.545 0.00 0.00 0.00 3.51
263 264 1.551883 GCTAGGGTTAGGGTTTCGACA 59.448 52.381 0.00 0.00 0.00 4.35
264 265 1.470458 CGCTAGGGTTAGGGTTTCGAC 60.470 57.143 0.00 0.00 35.67 4.20
265 266 0.819582 CGCTAGGGTTAGGGTTTCGA 59.180 55.000 0.00 0.00 35.67 3.71
266 267 0.808847 GCGCTAGGGTTAGGGTTTCG 60.809 60.000 8.77 0.00 40.82 3.46
267 268 0.540454 AGCGCTAGGGTTAGGGTTTC 59.460 55.000 8.99 0.00 40.82 2.78
268 269 0.252197 CAGCGCTAGGGTTAGGGTTT 59.748 55.000 10.99 0.00 40.82 3.27
269 270 0.616679 TCAGCGCTAGGGTTAGGGTT 60.617 55.000 10.99 0.00 40.82 4.11
270 271 1.001248 TCAGCGCTAGGGTTAGGGT 59.999 57.895 10.99 0.00 40.82 4.34
271 272 0.755698 TCTCAGCGCTAGGGTTAGGG 60.756 60.000 10.99 0.00 41.44 3.53
272 273 0.671251 CTCTCAGCGCTAGGGTTAGG 59.329 60.000 10.99 0.00 0.00 2.69
273 274 1.606668 CTCTCTCAGCGCTAGGGTTAG 59.393 57.143 10.99 2.13 0.00 2.34
274 275 1.212195 TCTCTCTCAGCGCTAGGGTTA 59.788 52.381 10.99 0.00 0.00 2.85
275 276 0.033991 TCTCTCTCAGCGCTAGGGTT 60.034 55.000 10.99 0.00 0.00 4.11
276 277 0.184933 ATCTCTCTCAGCGCTAGGGT 59.815 55.000 10.99 0.00 0.00 4.34
277 278 0.881118 GATCTCTCTCAGCGCTAGGG 59.119 60.000 10.99 3.87 0.00 3.53
278 279 0.516877 CGATCTCTCTCAGCGCTAGG 59.483 60.000 10.99 5.96 0.00 3.02
279 280 0.110238 GCGATCTCTCTCAGCGCTAG 60.110 60.000 10.99 3.97 43.85 3.42
280 281 1.511318 GGCGATCTCTCTCAGCGCTA 61.511 60.000 10.99 0.00 46.17 4.26
281 282 2.721231 GCGATCTCTCTCAGCGCT 59.279 61.111 2.64 2.64 43.85 5.92
282 283 2.354539 GGCGATCTCTCTCAGCGC 60.355 66.667 0.00 0.00 46.20 5.92
283 284 2.334653 GGGCGATCTCTCTCAGCG 59.665 66.667 0.00 0.00 0.00 5.18
284 285 1.363443 CTGGGCGATCTCTCTCAGC 59.637 63.158 0.00 0.00 0.00 4.26
285 286 1.363443 GCTGGGCGATCTCTCTCAG 59.637 63.158 0.00 2.98 0.00 3.35
286 287 0.972471 TTGCTGGGCGATCTCTCTCA 60.972 55.000 0.00 0.00 0.00 3.27
287 288 0.392336 ATTGCTGGGCGATCTCTCTC 59.608 55.000 0.00 0.00 0.00 3.20
288 289 0.835941 AATTGCTGGGCGATCTCTCT 59.164 50.000 0.00 0.00 30.45 3.10
289 290 0.942962 CAATTGCTGGGCGATCTCTC 59.057 55.000 0.00 0.00 30.45 3.20
290 291 1.099879 GCAATTGCTGGGCGATCTCT 61.100 55.000 23.21 0.00 38.21 3.10
291 292 1.358046 GCAATTGCTGGGCGATCTC 59.642 57.895 23.21 0.00 38.21 2.75
292 293 2.123428 GGCAATTGCTGGGCGATCT 61.123 57.895 28.42 0.00 41.70 2.75
293 294 2.068277 GAGGCAATTGCTGGGCGATC 62.068 60.000 28.42 10.37 41.70 3.69
294 295 2.043652 AGGCAATTGCTGGGCGAT 60.044 55.556 28.42 5.02 41.70 4.58
295 296 2.751436 GAGGCAATTGCTGGGCGA 60.751 61.111 28.42 0.00 41.70 5.54
296 297 4.183686 CGAGGCAATTGCTGGGCG 62.184 66.667 28.42 21.09 41.70 6.13
297 298 4.503314 GCGAGGCAATTGCTGGGC 62.503 66.667 28.42 22.98 41.70 5.36
298 299 3.830192 GGCGAGGCAATTGCTGGG 61.830 66.667 28.42 18.04 41.70 4.45
299 300 3.060020 CTGGCGAGGCAATTGCTGG 62.060 63.158 28.42 18.37 41.70 4.85
300 301 2.262471 GACTGGCGAGGCAATTGCTG 62.262 60.000 28.42 19.20 41.70 4.41
301 302 2.034687 ACTGGCGAGGCAATTGCT 59.965 55.556 28.42 15.33 41.70 3.91
302 303 2.486966 GACTGGCGAGGCAATTGC 59.513 61.111 22.47 22.47 41.14 3.56
303 304 2.787249 CGACTGGCGAGGCAATTG 59.213 61.111 1.33 0.00 44.57 2.32
304 305 3.127533 GCGACTGGCGAGGCAATT 61.128 61.111 7.31 0.00 44.57 2.32
310 311 3.432051 CTAAGGGGCGACTGGCGAG 62.432 68.421 7.31 0.00 44.92 5.03
311 312 3.458163 CTAAGGGGCGACTGGCGA 61.458 66.667 7.31 0.00 44.92 5.54
330 331 1.083847 GTCCACGACGTTGCGAAAC 60.084 57.895 1.65 0.00 34.83 2.78
331 332 2.239124 GGTCCACGACGTTGCGAAA 61.239 57.895 1.65 0.00 32.65 3.46
332 333 2.659244 GGTCCACGACGTTGCGAA 60.659 61.111 1.65 0.00 32.65 4.70
333 334 4.651008 GGGTCCACGACGTTGCGA 62.651 66.667 1.65 0.00 32.65 5.10
335 336 4.651008 TCGGGTCCACGACGTTGC 62.651 66.667 1.65 0.00 38.06 4.17
341 342 0.107800 TTTGTTTGTCGGGTCCACGA 60.108 50.000 0.00 0.00 41.13 4.35
342 343 0.948678 ATTTGTTTGTCGGGTCCACG 59.051 50.000 0.00 0.00 0.00 4.94
343 344 1.950909 TGATTTGTTTGTCGGGTCCAC 59.049 47.619 0.00 0.00 0.00 4.02
344 345 2.350057 TGATTTGTTTGTCGGGTCCA 57.650 45.000 0.00 0.00 0.00 4.02
345 346 3.316868 TCTTTGATTTGTTTGTCGGGTCC 59.683 43.478 0.00 0.00 0.00 4.46
346 347 4.561735 TCTTTGATTTGTTTGTCGGGTC 57.438 40.909 0.00 0.00 0.00 4.46
347 348 4.827284 AGATCTTTGATTTGTTTGTCGGGT 59.173 37.500 0.00 0.00 0.00 5.28
348 349 5.048782 TGAGATCTTTGATTTGTTTGTCGGG 60.049 40.000 0.00 0.00 0.00 5.14
349 350 6.000891 TGAGATCTTTGATTTGTTTGTCGG 57.999 37.500 0.00 0.00 0.00 4.79
350 351 6.463890 CGATGAGATCTTTGATTTGTTTGTCG 59.536 38.462 0.00 0.00 0.00 4.35
351 352 7.269937 CACGATGAGATCTTTGATTTGTTTGTC 59.730 37.037 0.00 0.00 0.00 3.18
352 353 7.080099 CACGATGAGATCTTTGATTTGTTTGT 58.920 34.615 0.00 0.00 0.00 2.83
380 381 2.094182 ACGAATTGGCTAGCGAAGAAGA 60.094 45.455 17.43 0.00 0.00 2.87
385 386 2.268298 GAAGACGAATTGGCTAGCGAA 58.732 47.619 14.87 14.87 0.00 4.70
393 394 3.432252 ACAAAGTAGCGAAGACGAATTGG 59.568 43.478 0.00 0.00 42.66 3.16
396 397 3.056749 AGGACAAAGTAGCGAAGACGAAT 60.057 43.478 0.00 0.00 42.66 3.34
408 409 1.808945 GGTCGACGAGAGGACAAAGTA 59.191 52.381 9.92 0.00 34.87 2.24
450 466 0.802222 GCAGCAACGATGACTAGCGA 60.802 55.000 0.00 0.00 38.09 4.93
497 514 4.351874 AGTATACATATTGCCGCCTTGT 57.648 40.909 5.50 0.00 0.00 3.16
526 543 3.057969 TGGATGGATTCATGGATACGC 57.942 47.619 0.00 0.00 42.51 4.42
558 578 0.035458 GGGATGGATCGGGTCATCAC 59.965 60.000 10.60 4.58 40.94 3.06
567 587 1.227853 GGGAAACGGGGATGGATCG 60.228 63.158 0.00 0.00 0.00 3.69
580 600 3.283712 AAAATAGGGCTTTGGGGGAAA 57.716 42.857 0.00 0.00 0.00 3.13
626 649 7.692460 TGGATGGATGAATAGTTGAATATGC 57.308 36.000 0.00 0.00 0.00 3.14
668 691 7.776969 ACCCTAGACGTGTAGATAGAATAACAA 59.223 37.037 20.53 0.00 0.00 2.83
672 695 7.994911 TGAAACCCTAGACGTGTAGATAGAATA 59.005 37.037 20.53 0.00 0.00 1.75
807 834 6.037062 CCAAACACCTTTCCAAATTTCTTCAC 59.963 38.462 0.00 0.00 0.00 3.18
820 849 9.719355 AATTGAATATAAACCCAAACACCTTTC 57.281 29.630 0.00 0.00 0.00 2.62
919 964 7.571919 AGATCAACACCAGATGAGTTATCATT 58.428 34.615 0.00 0.00 46.39 2.57
935 980 7.802251 CAGAGACAAAATCTTCAAGATCAACAC 59.198 37.037 0.00 0.00 38.00 3.32
963 1008 6.691388 GCAAAGTTACCTACAACACTTTCAAG 59.309 38.462 0.00 0.00 37.36 3.02
976 1021 9.817809 CATCAAACTATCTAGCAAAGTTACCTA 57.182 33.333 5.09 0.00 33.24 3.08
989 1035 4.655762 AGCGCTGACATCAAACTATCTA 57.344 40.909 10.39 0.00 0.00 1.98
994 1040 1.802960 CTCAAGCGCTGACATCAAACT 59.197 47.619 12.58 0.00 0.00 2.66
1039 1088 7.153985 GCAAGAGAGACATCTAGATAGCAATT 58.846 38.462 4.54 0.00 35.30 2.32
1049 1098 5.458595 TCCAATAGGCAAGAGAGACATCTA 58.541 41.667 0.00 0.00 32.71 1.98
1051 1100 4.679373 TCCAATAGGCAAGAGAGACATC 57.321 45.455 0.00 0.00 33.74 3.06
1069 1118 1.191489 TGCACCGTTGAGAGGATCCA 61.191 55.000 15.82 0.00 33.66 3.41
1083 1133 2.103094 TGAGGCTATAGACACATGCACC 59.897 50.000 8.68 0.00 0.00 5.01
1193 1243 4.521146 CAAGGTATCCTTCTCAATGCAGT 58.479 43.478 0.00 0.00 42.67 4.40
1211 1261 2.827322 TCAAGATCAACATTGGCCAAGG 59.173 45.455 27.76 27.76 0.00 3.61
1269 1319 5.120399 TCGGTGCTTCAGAAAAAGTTTCTA 58.880 37.500 3.04 0.00 0.00 2.10
1534 1616 1.068055 GCCATGTGTTTCAGAAGGCTG 60.068 52.381 6.02 0.00 43.67 4.85
1535 1617 1.251251 GCCATGTGTTTCAGAAGGCT 58.749 50.000 6.02 0.00 38.50 4.58
1540 1622 1.971167 GCCGGCCATGTGTTTCAGA 60.971 57.895 18.11 0.00 0.00 3.27
1656 1738 6.145338 TGTTTTCGGTTGCCTTTGTTATTA 57.855 33.333 0.00 0.00 0.00 0.98
1698 1780 2.544844 TTCCTATTCGGGTCACCTCT 57.455 50.000 0.00 0.00 33.28 3.69
1719 1801 2.188817 GTGGAACTACACCCCTCATCT 58.811 52.381 0.00 0.00 35.34 2.90
1740 1822 1.502527 ATCCGGCCTTGTAAACCCCA 61.503 55.000 0.00 0.00 0.00 4.96
1769 1851 1.801178 GCTCTTGCCACAACTACACTC 59.199 52.381 0.00 0.00 0.00 3.51
1826 1908 2.223947 TGAGAGTGTTCGTGCTTTGCTA 60.224 45.455 0.00 0.00 0.00 3.49
1920 2003 4.513318 GCACTCTTTTATCCACTCATAGCC 59.487 45.833 0.00 0.00 0.00 3.93
1923 2006 5.592104 TCGCACTCTTTTATCCACTCATA 57.408 39.130 0.00 0.00 0.00 2.15
1977 2060 4.035558 GCATCATTGCTTATCTCCAAACGA 59.964 41.667 0.00 0.00 45.77 3.85
1997 2080 1.117150 GCCACCCATCTTCATTGCAT 58.883 50.000 0.00 0.00 0.00 3.96
2007 2090 0.381801 CGCTTATGTTGCCACCCATC 59.618 55.000 0.00 0.00 0.00 3.51
2069 2152 2.249844 TTCACTTGGACCTTTCCGTC 57.750 50.000 0.00 0.00 46.37 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.