Multiple sequence alignment - TraesCS2B01G155200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G155200 chr2B 100.000 3572 0 0 1 3572 123099351 123102922 0.000000e+00 6597
1 TraesCS2B01G155200 chr2B 95.028 905 38 5 2672 3572 128259537 128260438 0.000000e+00 1415
2 TraesCS2B01G155200 chr2B 87.168 226 24 3 2438 2659 128311962 128312186 5.920000e-63 252
3 TraesCS2B01G155200 chr2D 92.610 3383 146 49 1 3308 79231401 79234754 0.000000e+00 4767
4 TraesCS2B01G155200 chr2D 83.744 203 24 7 2468 2661 79332704 79332906 2.190000e-42 183
5 TraesCS2B01G155200 chr2A 90.873 2750 144 38 874 3567 79441265 79443963 0.000000e+00 3589
6 TraesCS2B01G155200 chr2A 83.563 797 66 35 138 891 79440477 79441251 0.000000e+00 686
7 TraesCS2B01G155200 chr2A 81.590 239 29 9 2438 2661 79497909 79498147 2.190000e-42 183
8 TraesCS2B01G155200 chr2A 88.387 155 14 3 2441 2591 79540979 79541133 2.190000e-42 183
9 TraesCS2B01G155200 chr1B 76.362 1083 205 46 1106 2167 20835095 20836147 5.250000e-148 534
10 TraesCS2B01G155200 chr1B 79.949 394 74 4 1051 1444 401604306 401603918 5.840000e-73 285
11 TraesCS2B01G155200 chr1D 75.658 1101 211 44 1094 2167 15048706 15049776 2.480000e-136 496
12 TraesCS2B01G155200 chr1D 81.203 399 67 8 1032 1430 298548520 298548130 7.440000e-82 315
13 TraesCS2B01G155200 chr1A 76.094 983 187 40 1115 2077 15518153 15517199 1.500000e-128 470
14 TraesCS2B01G155200 chr1A 82.428 313 54 1 1118 1430 372195565 372195254 4.540000e-69 272
15 TraesCS2B01G155200 chr1A 81.448 221 40 1 1140 1360 372197540 372197321 2.830000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G155200 chr2B 123099351 123102922 3571 False 6597.0 6597 100.000 1 3572 1 chr2B.!!$F1 3571
1 TraesCS2B01G155200 chr2B 128259537 128260438 901 False 1415.0 1415 95.028 2672 3572 1 chr2B.!!$F2 900
2 TraesCS2B01G155200 chr2D 79231401 79234754 3353 False 4767.0 4767 92.610 1 3308 1 chr2D.!!$F1 3307
3 TraesCS2B01G155200 chr2A 79440477 79443963 3486 False 2137.5 3589 87.218 138 3567 2 chr2A.!!$F3 3429
4 TraesCS2B01G155200 chr1B 20835095 20836147 1052 False 534.0 534 76.362 1106 2167 1 chr1B.!!$F1 1061
5 TraesCS2B01G155200 chr1D 15048706 15049776 1070 False 496.0 496 75.658 1094 2167 1 chr1D.!!$F1 1073
6 TraesCS2B01G155200 chr1A 15517199 15518153 954 True 470.0 470 76.094 1115 2077 1 chr1A.!!$R1 962
7 TraesCS2B01G155200 chr1A 372195254 372197540 2286 True 226.0 272 81.938 1118 1430 2 chr1A.!!$R2 312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 568 0.108851 CCACACCACATCGACGATCA 60.109 55.0 7.54 0.0 0.0 2.92 F
1324 2183 0.179179 GCTCGCCGTAGTACTCGTTT 60.179 55.0 0.00 0.0 0.0 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 2243 2.743752 CGCCATGACGCACTTCCTG 61.744 63.158 0.00 0.00 0.00 3.86 R
2899 3806 0.319297 GCTTTACGCCGATATCCCGT 60.319 55.000 16.97 16.97 38.84 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 83 1.467920 GAAGGAACCATCTGCCTTGG 58.532 55.000 0.00 0.00 41.85 3.61
107 112 5.185635 TCAAATCCAAGGCAAATCCAGTAAG 59.814 40.000 0.00 0.00 37.29 2.34
141 146 3.716006 CTCACTGGCGTGCAACCG 61.716 66.667 0.00 0.00 40.99 4.44
157 162 4.214545 TGCAACCGAAGTAACGATCAAATT 59.785 37.500 0.00 0.00 35.09 1.82
165 171 6.457359 CGAAGTAACGATCAAATTAACGTGTG 59.543 38.462 0.00 0.00 38.92 3.82
166 172 6.774354 AGTAACGATCAAATTAACGTGTGT 57.226 33.333 0.00 0.00 38.92 3.72
362 379 2.771089 TCAGTGGCAGCAGTAGAAAAG 58.229 47.619 0.00 0.00 0.00 2.27
433 456 3.483954 GCACTGCTGGTGGTGATAT 57.516 52.632 11.18 0.00 45.44 1.63
435 458 2.487934 GCACTGCTGGTGGTGATATAG 58.512 52.381 11.18 0.00 45.44 1.31
445 469 4.591498 TGGTGGTGATATAGCTTTATCGGT 59.409 41.667 16.37 0.00 32.30 4.69
514 538 1.256812 GTTCCAACCAACCCATCCAG 58.743 55.000 0.00 0.00 0.00 3.86
539 568 0.108851 CCACACCACATCGACGATCA 60.109 55.000 7.54 0.00 0.00 2.92
541 570 1.390123 CACACCACATCGACGATCAAC 59.610 52.381 7.54 0.00 0.00 3.18
563 592 2.814410 CGATTGATCGGCATACGCT 58.186 52.632 5.51 0.00 45.93 5.07
564 593 0.436150 CGATTGATCGGCATACGCTG 59.564 55.000 5.51 0.00 45.93 5.18
581 610 2.750807 CGCTGGGATTGGATTGGAATCT 60.751 50.000 0.00 0.00 35.73 2.40
592 621 3.204382 GGATTGGAATCTGGGGTAGGAAA 59.796 47.826 0.00 0.00 35.73 3.13
617 646 1.840635 GAACATCTCCCTGCCTAACCT 59.159 52.381 0.00 0.00 0.00 3.50
618 647 1.207791 ACATCTCCCTGCCTAACCTG 58.792 55.000 0.00 0.00 0.00 4.00
619 648 1.273838 ACATCTCCCTGCCTAACCTGA 60.274 52.381 0.00 0.00 0.00 3.86
621 650 0.617820 TCTCCCTGCCTAACCTGACC 60.618 60.000 0.00 0.00 0.00 4.02
622 651 0.618968 CTCCCTGCCTAACCTGACCT 60.619 60.000 0.00 0.00 0.00 3.85
624 653 1.627297 CCCTGCCTAACCTGACCTCC 61.627 65.000 0.00 0.00 0.00 4.30
625 654 1.627297 CCTGCCTAACCTGACCTCCC 61.627 65.000 0.00 0.00 0.00 4.30
627 656 0.909610 TGCCTAACCTGACCTCCCTG 60.910 60.000 0.00 0.00 0.00 4.45
628 657 1.627297 GCCTAACCTGACCTCCCTGG 61.627 65.000 0.00 0.00 42.93 4.45
629 658 1.627297 CCTAACCTGACCTCCCTGGC 61.627 65.000 0.00 0.00 40.22 4.85
630 659 0.618968 CTAACCTGACCTCCCTGGCT 60.619 60.000 0.00 0.00 40.22 4.75
631 660 0.909610 TAACCTGACCTCCCTGGCTG 60.910 60.000 0.00 0.00 40.22 4.85
660 689 2.586258 ACGTTTCAGATGGATCCTCG 57.414 50.000 14.23 7.32 0.00 4.63
667 696 2.031870 CAGATGGATCCTCGTGGTGTA 58.968 52.381 14.23 0.00 34.23 2.90
668 697 2.430694 CAGATGGATCCTCGTGGTGTAA 59.569 50.000 14.23 0.00 34.23 2.41
669 698 2.431057 AGATGGATCCTCGTGGTGTAAC 59.569 50.000 14.23 0.00 34.23 2.50
672 701 1.641577 GATCCTCGTGGTGTAACAGC 58.358 55.000 2.99 0.00 39.98 4.40
776 827 0.389166 CTTCCTCCGCTCACTGTCAC 60.389 60.000 0.00 0.00 0.00 3.67
812 879 5.921962 AACTGAATCCTTCTTTATTGGGC 57.078 39.130 0.00 0.00 0.00 5.36
815 886 6.672593 ACTGAATCCTTCTTTATTGGGCATA 58.327 36.000 0.00 0.00 0.00 3.14
827 898 9.234827 TCTTTATTGGGCATATATTCACATCAG 57.765 33.333 0.00 0.00 0.00 2.90
828 899 5.909621 ATTGGGCATATATTCACATCAGC 57.090 39.130 0.00 0.00 0.00 4.26
833 904 5.882000 GGGCATATATTCACATCAGCATGTA 59.118 40.000 0.00 0.00 41.69 2.29
834 905 6.375174 GGGCATATATTCACATCAGCATGTAA 59.625 38.462 0.00 0.00 41.69 2.41
835 906 7.094248 GGGCATATATTCACATCAGCATGTAAA 60.094 37.037 0.00 0.00 41.69 2.01
836 907 7.752239 GGCATATATTCACATCAGCATGTAAAC 59.248 37.037 0.00 0.00 41.69 2.01
837 908 7.752239 GCATATATTCACATCAGCATGTAAACC 59.248 37.037 0.00 0.00 41.69 3.27
838 909 8.785946 CATATATTCACATCAGCATGTAAACCA 58.214 33.333 0.00 0.00 41.69 3.67
1324 2183 0.179179 GCTCGCCGTAGTACTCGTTT 60.179 55.000 0.00 0.00 0.00 3.60
1621 2489 1.672356 CAGGTGCTTGTTCGGGAGG 60.672 63.158 0.00 0.00 0.00 4.30
1630 2498 3.771160 TTCGGGAGGGCGAGCTTC 61.771 66.667 0.00 0.00 0.00 3.86
2581 3479 0.035725 CCTTGCATGACAGCTCCTCA 60.036 55.000 0.00 0.00 34.99 3.86
2584 3482 0.906775 TGCATGACAGCTCCTCATGA 59.093 50.000 25.55 13.33 45.44 3.07
2642 3540 2.040330 TGCTGTTGCACCATGTTCC 58.960 52.632 0.00 0.00 45.31 3.62
2643 3541 0.467844 TGCTGTTGCACCATGTTCCT 60.468 50.000 0.00 0.00 45.31 3.36
2665 3563 3.131396 GCGGTTCTAGAGAGAGAGAGAG 58.869 54.545 0.00 0.00 31.77 3.20
2667 3565 3.494398 CGGTTCTAGAGAGAGAGAGAGGG 60.494 56.522 0.00 0.00 31.77 4.30
2679 3579 0.544697 AGAGAGGGGAGAGAGTCGAC 59.455 60.000 7.70 7.70 0.00 4.20
2697 3597 1.760613 GACGGGAGAGAGAGAGAGAGA 59.239 57.143 0.00 0.00 0.00 3.10
2698 3598 1.762957 ACGGGAGAGAGAGAGAGAGAG 59.237 57.143 0.00 0.00 0.00 3.20
2702 3602 3.309296 GGAGAGAGAGAGAGAGAGGAGA 58.691 54.545 0.00 0.00 0.00 3.71
2703 3603 3.323403 GGAGAGAGAGAGAGAGAGGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
2704 3604 4.219115 GAGAGAGAGAGAGAGAGGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
2705 3605 4.222336 AGAGAGAGAGAGAGAGGAGAGAG 58.778 52.174 0.00 0.00 0.00 3.20
2706 3606 4.078922 AGAGAGAGAGAGAGAGGAGAGAGA 60.079 50.000 0.00 0.00 0.00 3.10
2727 3629 0.109913 AGGTTCTCGGGGTTTTGGAC 59.890 55.000 0.00 0.00 0.00 4.02
2748 3652 1.088306 GACGAAGCGAGAGGAGAGAA 58.912 55.000 0.00 0.00 0.00 2.87
2899 3806 1.532523 TTGCAACGGAGCATCAATGA 58.467 45.000 4.86 0.00 45.19 2.57
2913 3820 0.319555 CAATGACGGGATATCGGCGT 60.320 55.000 6.85 0.00 41.88 5.68
3028 3942 3.873361 AGCCATTCATACATTCAGACACG 59.127 43.478 0.00 0.00 0.00 4.49
3149 4063 4.480541 CTCCGTGCATGATACATCTAGAC 58.519 47.826 7.72 0.00 0.00 2.59
3154 4068 5.506317 CGTGCATGATACATCTAGACTGACA 60.506 44.000 0.00 0.00 0.00 3.58
3164 4078 9.860650 ATACATCTAGACTGACAGAGAATAGTT 57.139 33.333 10.08 0.00 0.00 2.24
3238 4152 6.560799 CGATTTGAAACAACTCACAAATGCAG 60.561 38.462 0.00 0.00 41.11 4.41
3273 4187 2.543861 CGATAGTTGTCTGGATGGTCGG 60.544 54.545 0.00 0.00 0.00 4.79
3288 4202 2.569853 TGGTCGGTCCATATCTTGTTGT 59.430 45.455 0.00 0.00 41.93 3.32
3299 4213 5.391310 CCATATCTTGTTGTGCTCAAGTGTC 60.391 44.000 0.50 0.00 41.78 3.67
3329 4243 9.616156 TTAGATCGGTATCTCTTGTATATCCTC 57.384 37.037 0.00 0.00 41.71 3.71
3352 4266 4.342772 CTCGGTTTGAAACAACTCACAAG 58.657 43.478 10.53 0.00 0.00 3.16
3379 4293 3.570550 AGACTTCAGAGTGACGCTAGTTT 59.429 43.478 0.00 0.00 35.88 2.66
3450 4413 6.350027 CCAGATGTCGCATTAGATGATAGACT 60.350 42.308 10.52 0.00 34.31 3.24
3489 4452 4.438145 CGAGTGTCGCATTAGTTGATAGAC 59.562 45.833 0.00 0.00 31.14 2.59
3490 4453 4.683832 AGTGTCGCATTAGTTGATAGACC 58.316 43.478 0.00 0.00 0.00 3.85
3491 4454 3.802685 GTGTCGCATTAGTTGATAGACCC 59.197 47.826 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 83 4.931601 GGATTTGCCTTGGATTTGAAGAAC 59.068 41.667 0.00 0.00 0.00 3.01
107 112 6.073927 GCCAGTGAGTAAAAACAGTACTGTAC 60.074 42.308 28.13 21.27 44.13 2.90
141 146 7.285788 ACACACGTTAATTTGATCGTTACTTC 58.714 34.615 0.00 0.00 34.30 3.01
157 162 4.937620 AGTCTAGAACCGATACACACGTTA 59.062 41.667 0.00 0.00 0.00 3.18
165 171 3.285484 TGGGTGAGTCTAGAACCGATAC 58.715 50.000 6.09 0.00 34.62 2.24
166 172 3.201487 TCTGGGTGAGTCTAGAACCGATA 59.799 47.826 6.09 0.00 34.62 2.92
239 250 1.374947 GCCAGTCACTGCCTTACCA 59.625 57.895 0.00 0.00 0.00 3.25
362 379 3.830755 TGTATATTCCTACTCCGGCTTCC 59.169 47.826 0.00 0.00 0.00 3.46
412 435 1.771783 ATCACCACCAGCAGTGCTCA 61.772 55.000 16.58 0.00 45.83 4.26
433 456 8.185506 TGATAATTAGTGGACCGATAAAGCTA 57.814 34.615 0.00 0.00 0.00 3.32
435 458 6.929606 ACTGATAATTAGTGGACCGATAAAGC 59.070 38.462 0.00 0.00 0.00 3.51
445 469 9.109393 GTCAATAAAGCACTGATAATTAGTGGA 57.891 33.333 10.18 0.00 44.36 4.02
514 538 1.263217 GTCGATGTGGTGTGGTTGTTC 59.737 52.381 0.00 0.00 0.00 3.18
561 590 2.626743 CAGATTCCAATCCAATCCCAGC 59.373 50.000 0.00 0.00 36.04 4.85
562 591 3.228453 CCAGATTCCAATCCAATCCCAG 58.772 50.000 0.00 0.00 36.04 4.45
563 592 2.091166 CCCAGATTCCAATCCAATCCCA 60.091 50.000 0.00 0.00 36.04 4.37
564 593 2.601905 CCCAGATTCCAATCCAATCCC 58.398 52.381 0.00 0.00 36.04 3.85
581 610 0.397564 GTTCCGTGTTTCCTACCCCA 59.602 55.000 0.00 0.00 0.00 4.96
617 646 4.664267 AGGCAGCCAGGGAGGTCA 62.664 66.667 15.80 0.00 40.61 4.02
618 647 3.791586 GAGGCAGCCAGGGAGGTC 61.792 72.222 15.80 0.00 40.61 3.85
619 648 4.345286 AGAGGCAGCCAGGGAGGT 62.345 66.667 15.80 0.00 40.61 3.85
621 650 4.486503 GCAGAGGCAGCCAGGGAG 62.487 72.222 15.80 0.00 40.72 4.30
631 660 2.010145 TCTGAAACGTATGCAGAGGC 57.990 50.000 9.91 0.00 41.68 4.70
641 670 1.825474 ACGAGGATCCATCTGAAACGT 59.175 47.619 15.82 9.06 0.00 3.99
660 689 2.325082 CCGCCTGCTGTTACACCAC 61.325 63.158 0.00 0.00 0.00 4.16
667 696 0.179029 ACTGTAAACCGCCTGCTGTT 60.179 50.000 0.00 0.00 0.00 3.16
668 697 0.179029 AACTGTAAACCGCCTGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
669 698 0.517316 GAACTGTAAACCGCCTGCTG 59.483 55.000 0.00 0.00 0.00 4.41
672 701 0.511221 CACGAACTGTAAACCGCCTG 59.489 55.000 0.00 0.00 0.00 4.85
740 790 2.346803 GAAGATTCCTGCGTGCAAGTA 58.653 47.619 0.59 0.00 0.00 2.24
776 827 4.553429 GGATTCAGTTACAATTTTGCGTCG 59.447 41.667 0.00 0.00 0.00 5.12
812 879 8.785946 TGGTTTACATGCTGATGTGAATATATG 58.214 33.333 0.08 0.00 43.03 1.78
815 886 6.238842 GCTGGTTTACATGCTGATGTGAATAT 60.239 38.462 0.08 0.00 43.03 1.28
827 898 2.348872 CGATCGATGCTGGTTTACATGC 60.349 50.000 10.26 0.00 0.00 4.06
828 899 3.123050 TCGATCGATGCTGGTTTACATG 58.877 45.455 15.15 0.00 0.00 3.21
833 904 2.205074 GTGATCGATCGATGCTGGTTT 58.795 47.619 33.86 9.47 34.60 3.27
834 905 1.858091 GTGATCGATCGATGCTGGTT 58.142 50.000 33.86 10.29 34.60 3.67
835 906 0.318191 CGTGATCGATCGATGCTGGT 60.318 55.000 33.86 11.11 39.71 4.00
836 907 1.005804 CCGTGATCGATCGATGCTGG 61.006 60.000 33.86 25.17 39.71 4.85
837 908 1.005804 CCCGTGATCGATCGATGCTG 61.006 60.000 33.86 20.95 39.71 4.41
838 909 1.287191 CCCGTGATCGATCGATGCT 59.713 57.895 33.86 12.77 39.71 3.79
1047 1159 3.804193 GCCGGCCGAAAAGCAGAG 61.804 66.667 30.73 7.40 0.00 3.35
1052 1164 3.440415 GAAGGGCCGGCCGAAAAG 61.440 66.667 38.22 11.36 36.85 2.27
1384 2243 2.743752 CGCCATGACGCACTTCCTG 61.744 63.158 0.00 0.00 0.00 3.86
1926 2797 2.769617 GCGTGGTGTTCGTCATCG 59.230 61.111 0.00 0.00 38.55 3.84
2581 3479 0.625683 ACAAGGGGGAGCCTGATCAT 60.626 55.000 0.00 0.00 0.00 2.45
2584 3482 2.370445 CGACAAGGGGGAGCCTGAT 61.370 63.158 0.00 0.00 0.00 2.90
2642 3540 2.872245 CTCTCTCTCTCTAGAACCGCAG 59.128 54.545 0.00 0.00 0.00 5.18
2643 3541 2.502130 TCTCTCTCTCTCTAGAACCGCA 59.498 50.000 0.00 0.00 0.00 5.69
2665 3563 2.829458 CCCGTCGACTCTCTCCCC 60.829 72.222 14.70 0.00 0.00 4.81
2667 3565 0.812412 CTCTCCCGTCGACTCTCTCC 60.812 65.000 14.70 0.00 0.00 3.71
2679 3579 1.070758 CCTCTCTCTCTCTCTCTCCCG 59.929 61.905 0.00 0.00 0.00 5.14
2704 3604 2.583143 CAAAACCCCGAGAACCTTTCT 58.417 47.619 0.00 0.00 44.21 2.52
2705 3605 1.611977 CCAAAACCCCGAGAACCTTTC 59.388 52.381 0.00 0.00 0.00 2.62
2706 3606 1.215924 TCCAAAACCCCGAGAACCTTT 59.784 47.619 0.00 0.00 0.00 3.11
2727 3629 0.376852 CTCTCCTCTCGCTTCGTCAG 59.623 60.000 0.00 0.00 0.00 3.51
2748 3652 0.400594 GCCATTTATAGCTCCCGGGT 59.599 55.000 22.86 3.24 0.00 5.28
2899 3806 0.319297 GCTTTACGCCGATATCCCGT 60.319 55.000 16.97 16.97 38.84 5.28
2913 3820 4.342665 CCCAGTTACCCAACAAAAGCTTTA 59.657 41.667 13.10 0.00 37.10 1.85
3011 3925 2.921121 GCGTCGTGTCTGAATGTATGAA 59.079 45.455 0.00 0.00 0.00 2.57
3012 3926 2.163613 AGCGTCGTGTCTGAATGTATGA 59.836 45.455 0.00 0.00 0.00 2.15
3017 3931 1.702886 AGAAGCGTCGTGTCTGAATG 58.297 50.000 0.00 0.00 0.00 2.67
3028 3942 2.937994 TAGCGTACGATAGAAGCGTC 57.062 50.000 21.65 0.00 42.62 5.19
3149 4063 9.645059 TTTATCTGAACAACTATTCTCTGTCAG 57.355 33.333 0.00 0.00 0.00 3.51
3154 4068 6.758886 CCGCTTTATCTGAACAACTATTCTCT 59.241 38.462 0.00 0.00 0.00 3.10
3164 4078 2.224426 ACCACACCGCTTTATCTGAACA 60.224 45.455 0.00 0.00 0.00 3.18
3238 4152 5.881447 ACAACTATCGTCGCTATGATATCC 58.119 41.667 0.00 0.00 33.97 2.59
3273 4187 4.697352 ACTTGAGCACAACAAGATATGGAC 59.303 41.667 13.34 0.00 44.92 4.02
3288 4202 2.741759 TCTAATGCGACACTTGAGCA 57.258 45.000 6.60 6.60 45.46 4.26
3299 4213 4.799678 ACAAGAGATACCGATCTAATGCG 58.200 43.478 0.00 0.00 42.80 4.73
3327 4241 3.002348 GTGAGTTGTTTCAAACCGAGGAG 59.998 47.826 0.00 0.00 0.00 3.69
3329 4243 2.680841 TGTGAGTTGTTTCAAACCGAGG 59.319 45.455 0.00 0.00 0.00 4.63
3352 4266 0.787183 GTCACTCTGAAGTCTTGCGC 59.213 55.000 0.00 0.00 31.71 6.09
3379 4293 7.329471 GCAACAAGATATATCTAGCATCGAACA 59.671 37.037 15.64 0.00 35.76 3.18
3450 4413 1.134818 ACTCGGCGCAACAAGATATGA 60.135 47.619 10.83 0.00 0.00 2.15
3489 4452 0.381801 GCGGTGCAACAAGATATGGG 59.618 55.000 0.98 0.00 39.98 4.00
3490 4453 1.093972 TGCGGTGCAACAAGATATGG 58.906 50.000 0.98 0.00 39.98 2.74
3491 4454 2.097954 ACATGCGGTGCAACAAGATATG 59.902 45.455 0.98 0.89 43.62 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.