Multiple sequence alignment - TraesCS2B01G154700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G154700 chr2B 100.000 6556 0 0 983 7538 122747015 122740460 0.000000e+00 12107
1 TraesCS2B01G154700 chr2B 100.000 640 0 0 1 640 122747997 122747358 0.000000e+00 1182
2 TraesCS2B01G154700 chr2B 90.675 622 37 12 6927 7530 800501661 800502279 0.000000e+00 808
3 TraesCS2B01G154700 chr2B 90.048 623 40 13 6927 7530 15655653 15656272 0.000000e+00 787
4 TraesCS2B01G154700 chr2B 93.162 117 5 2 5459 5573 545266813 545266698 1.300000e-37 169
5 TraesCS2B01G154700 chr2B 94.845 97 5 0 4513 4609 297438933 297439029 1.310000e-32 152
6 TraesCS2B01G154700 chr2B 93.684 95 4 2 4513 4607 525815661 525815569 2.840000e-29 141
7 TraesCS2B01G154700 chr2A 95.020 1506 61 6 2801 4295 79320760 79319258 0.000000e+00 2353
8 TraesCS2B01G154700 chr2A 89.866 1717 96 22 1103 2798 79322477 79320818 0.000000e+00 2135
9 TraesCS2B01G154700 chr2A 92.281 855 45 10 5459 6293 79316115 79315262 0.000000e+00 1194
10 TraesCS2B01G154700 chr2A 93.984 615 27 9 6289 6897 79315107 79314497 0.000000e+00 922
11 TraesCS2B01G154700 chr2A 90.651 599 24 7 4603 5200 79318929 79318362 0.000000e+00 767
12 TraesCS2B01G154700 chr2A 96.070 229 9 0 4294 4522 79319154 79318926 2.570000e-99 374
13 TraesCS2B01G154700 chr2A 90.876 274 15 2 5195 5467 79316418 79316154 7.190000e-95 359
14 TraesCS2B01G154700 chr2A 82.960 223 18 16 418 631 79323163 79322952 4.650000e-42 183
15 TraesCS2B01G154700 chr2D 93.682 1567 85 8 1242 2798 79060477 79058915 0.000000e+00 2333
16 TraesCS2B01G154700 chr2D 92.127 1486 69 19 5459 6927 79056277 79054823 0.000000e+00 2052
17 TraesCS2B01G154700 chr2D 95.163 951 35 6 2800 3748 79058859 79057918 0.000000e+00 1491
18 TraesCS2B01G154700 chr2D 91.811 867 44 5 4603 5467 79057157 79056316 0.000000e+00 1182
19 TraesCS2B01G154700 chr2D 97.655 469 10 1 4054 4522 79057621 79057154 0.000000e+00 804
20 TraesCS2B01G154700 chr2D 91.562 320 8 8 318 631 79061378 79061072 2.510000e-114 424
21 TraesCS2B01G154700 chr2D 93.286 283 17 1 3746 4028 79057890 79057610 4.210000e-112 416
22 TraesCS2B01G154700 chr5B 90.354 622 40 15 6927 7530 681211814 681212433 0.000000e+00 798
23 TraesCS2B01G154700 chr5B 89.677 620 47 14 6927 7533 67964859 67964244 0.000000e+00 774
24 TraesCS2B01G154700 chr5B 94.545 110 5 1 5459 5568 665744577 665744469 1.300000e-37 169
25 TraesCS2B01G154700 chr5B 94.624 93 5 0 4516 4608 676928192 676928100 2.190000e-30 145
26 TraesCS2B01G154700 chr1A 88.339 626 52 11 6925 7530 451855251 451855875 0.000000e+00 732
27 TraesCS2B01G154700 chrUn 88.320 625 51 13 6922 7530 283564581 283565199 0.000000e+00 730
28 TraesCS2B01G154700 chrUn 88.057 628 53 13 6922 7533 283562270 283561649 0.000000e+00 725
29 TraesCS2B01G154700 chr7B 88.368 619 43 13 6927 7530 748332301 748332905 0.000000e+00 717
30 TraesCS2B01G154700 chr7B 93.407 91 6 0 4518 4608 72259473 72259383 1.320000e-27 135
31 TraesCS2B01G154700 chr5A 87.639 631 51 11 6923 7530 502599656 502600282 0.000000e+00 708
32 TraesCS2B01G154700 chr5A 94.545 110 5 1 5459 5568 656872393 656872285 1.300000e-37 169
33 TraesCS2B01G154700 chr5D 94.545 110 5 1 5459 5568 528717386 528717278 1.300000e-37 169
34 TraesCS2B01G154700 chr4D 93.750 112 5 1 5459 5568 74079462 74079351 4.680000e-37 167
35 TraesCS2B01G154700 chr4D 95.652 92 4 0 4517 4608 16403539 16403448 1.690000e-31 148
36 TraesCS2B01G154700 chr4D 92.632 95 6 1 4518 4612 98448053 98447960 1.320000e-27 135
37 TraesCS2B01G154700 chr1D 93.750 112 5 1 5459 5568 193504494 193504383 4.680000e-37 167
38 TraesCS2B01G154700 chr1D 93.617 94 6 0 4515 4608 6790590 6790683 2.840000e-29 141
39 TraesCS2B01G154700 chr6B 92.308 117 5 3 5459 5573 537553951 537553837 6.050000e-36 163
40 TraesCS2B01G154700 chr6D 93.617 94 6 0 4518 4611 458997539 458997632 2.840000e-29 141
41 TraesCS2B01G154700 chr4B 91.000 100 9 0 4505 4604 527979124 527979223 1.320000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G154700 chr2B 122740460 122747997 7537 True 6644.500000 12107 100.000000 1 7538 2 chr2B.!!$R3 7537
1 TraesCS2B01G154700 chr2B 800501661 800502279 618 False 808.000000 808 90.675000 6927 7530 1 chr2B.!!$F3 603
2 TraesCS2B01G154700 chr2B 15655653 15656272 619 False 787.000000 787 90.048000 6927 7530 1 chr2B.!!$F1 603
3 TraesCS2B01G154700 chr2A 79314497 79323163 8666 True 1035.875000 2353 91.463500 418 6897 8 chr2A.!!$R1 6479
4 TraesCS2B01G154700 chr2D 79054823 79061378 6555 True 1243.142857 2333 93.612286 318 6927 7 chr2D.!!$R1 6609
5 TraesCS2B01G154700 chr5B 681211814 681212433 619 False 798.000000 798 90.354000 6927 7530 1 chr5B.!!$F1 603
6 TraesCS2B01G154700 chr5B 67964244 67964859 615 True 774.000000 774 89.677000 6927 7533 1 chr5B.!!$R1 606
7 TraesCS2B01G154700 chr1A 451855251 451855875 624 False 732.000000 732 88.339000 6925 7530 1 chr1A.!!$F1 605
8 TraesCS2B01G154700 chrUn 283564581 283565199 618 False 730.000000 730 88.320000 6922 7530 1 chrUn.!!$F1 608
9 TraesCS2B01G154700 chrUn 283561649 283562270 621 True 725.000000 725 88.057000 6922 7533 1 chrUn.!!$R1 611
10 TraesCS2B01G154700 chr7B 748332301 748332905 604 False 717.000000 717 88.368000 6927 7530 1 chr7B.!!$F1 603
11 TraesCS2B01G154700 chr5A 502599656 502600282 626 False 708.000000 708 87.639000 6923 7530 1 chr5A.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.171007 GTTGGTTGGGTGCATCGATG 59.829 55.000 21.27 21.27 0.00 3.84 F
262 263 0.251121 TTGGTTGGGTGCATCGATGT 60.251 50.000 25.47 0.00 0.00 3.06 F
408 409 0.321564 TCCAACATTCTGGCTGGACG 60.322 55.000 0.00 0.00 36.32 4.79 F
413 414 0.321564 CATTCTGGCTGGACGGACAA 60.322 55.000 0.00 0.00 0.00 3.18 F
415 416 0.400213 TTCTGGCTGGACGGACAAAT 59.600 50.000 0.00 0.00 0.00 2.32 F
632 653 0.400213 TATCCAATCCACCCATCCGC 59.600 55.000 0.00 0.00 0.00 5.54 F
1234 1486 0.615850 CTCAGTCCCCTGTTCCTTCC 59.384 60.000 0.00 0.00 39.82 3.46 F
2487 2761 0.831307 GGACCGGTAAGGCATTCTCT 59.169 55.000 7.34 0.00 46.52 3.10 F
3066 3397 1.062002 GTGGATGTTGTCGGCAATACG 59.938 52.381 5.40 0.00 36.92 3.06 F
4534 5010 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55 F
4536 5012 1.064166 TCTACTCCCTCCGTTCCGATT 60.064 52.381 0.00 0.00 0.00 3.34 F
5871 8365 0.035176 ACTACGGCCGCAACCTAAAA 59.965 50.000 28.58 0.00 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2269 0.034476 CTGCACTGGTTCAGAGCTCA 59.966 55.000 17.77 0.00 45.60 4.26 R
2066 2340 7.332926 CAGCACAACTAAGAGTCAAGTCATAAT 59.667 37.037 0.00 0.00 0.00 1.28 R
2366 2640 0.674534 CCTCGGTAGCTGTATCACCC 59.325 60.000 0.00 0.00 0.00 4.61 R
2390 2664 8.140628 TGGCACGCATATTTTGTCAAATATATT 58.859 29.630 0.00 0.00 41.72 1.28 R
2438 2712 1.557099 TGGATGCTCGTAGTTGGTCT 58.443 50.000 0.00 0.00 0.00 3.85 R
2564 2838 0.394216 TCTTGGCAATCCATGGACCG 60.394 55.000 18.99 12.39 43.05 4.79 R
2826 3156 1.067821 CGAGTTCTATGGACCTCTGGC 59.932 57.143 2.25 0.00 30.19 4.85 R
3756 4118 0.179132 TGCACATGGATCAATTGCGC 60.179 50.000 0.00 0.00 35.90 6.09 R
5019 5498 0.405198 ATGCATGTGTGGAGGGTCAA 59.595 50.000 0.00 0.00 0.00 3.18 R
5429 7857 0.249031 GGTGTTGCAGTTGAAGTGCC 60.249 55.000 21.09 8.24 43.71 5.01 R
6381 9033 0.680280 CTGCAAGCTGCCCAAGAGAT 60.680 55.000 0.00 0.00 44.23 2.75 R
7078 9749 0.165944 CGAACTCGCCGAAATTTGCT 59.834 50.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.890124 AGAATTGAAGATACATGTCATCTCAG 57.110 34.615 0.00 0.00 31.45 3.35
34 35 8.702819 AGAATTGAAGATACATGTCATCTCAGA 58.297 33.333 0.00 0.57 31.45 3.27
35 36 9.491675 GAATTGAAGATACATGTCATCTCAGAT 57.508 33.333 0.00 2.62 31.45 2.90
36 37 8.834749 ATTGAAGATACATGTCATCTCAGATG 57.165 34.615 8.54 8.54 31.45 2.90
37 38 7.592885 TGAAGATACATGTCATCTCAGATGA 57.407 36.000 13.76 13.76 31.45 2.92
38 39 7.432059 TGAAGATACATGTCATCTCAGATGAC 58.568 38.462 32.92 32.92 46.28 3.06
48 49 5.982516 GTCATCTCAGATGACATGTCTAACC 59.017 44.000 34.03 10.20 45.61 2.85
49 50 5.069648 TCATCTCAGATGACATGTCTAACCC 59.930 44.000 25.55 10.52 0.00 4.11
50 51 4.352893 TCTCAGATGACATGTCTAACCCA 58.647 43.478 25.55 6.26 0.00 4.51
51 52 4.964897 TCTCAGATGACATGTCTAACCCAT 59.035 41.667 25.55 10.99 0.00 4.00
52 53 5.069648 TCTCAGATGACATGTCTAACCCATC 59.930 44.000 25.55 18.43 0.00 3.51
53 54 4.101585 TCAGATGACATGTCTAACCCATCC 59.898 45.833 25.55 6.01 33.00 3.51
54 55 3.392616 AGATGACATGTCTAACCCATCCC 59.607 47.826 25.55 1.24 33.00 3.85
55 56 2.556766 TGACATGTCTAACCCATCCCA 58.443 47.619 25.55 0.00 0.00 4.37
56 57 2.238646 TGACATGTCTAACCCATCCCAC 59.761 50.000 25.55 0.00 0.00 4.61
57 58 2.505819 GACATGTCTAACCCATCCCACT 59.494 50.000 18.83 0.00 0.00 4.00
58 59 2.919602 ACATGTCTAACCCATCCCACTT 59.080 45.455 0.00 0.00 0.00 3.16
59 60 4.108570 ACATGTCTAACCCATCCCACTTA 58.891 43.478 0.00 0.00 0.00 2.24
60 61 4.538490 ACATGTCTAACCCATCCCACTTAA 59.462 41.667 0.00 0.00 0.00 1.85
61 62 5.193728 ACATGTCTAACCCATCCCACTTAAT 59.806 40.000 0.00 0.00 0.00 1.40
62 63 6.388689 ACATGTCTAACCCATCCCACTTAATA 59.611 38.462 0.00 0.00 0.00 0.98
63 64 7.073725 ACATGTCTAACCCATCCCACTTAATAT 59.926 37.037 0.00 0.00 0.00 1.28
64 65 8.602424 CATGTCTAACCCATCCCACTTAATATA 58.398 37.037 0.00 0.00 0.00 0.86
65 66 8.202461 TGTCTAACCCATCCCACTTAATATAG 57.798 38.462 0.00 0.00 0.00 1.31
66 67 7.792736 TGTCTAACCCATCCCACTTAATATAGT 59.207 37.037 0.00 0.00 0.00 2.12
67 68 8.657712 GTCTAACCCATCCCACTTAATATAGTT 58.342 37.037 0.00 0.00 0.00 2.24
68 69 8.656806 TCTAACCCATCCCACTTAATATAGTTG 58.343 37.037 0.00 0.00 0.00 3.16
69 70 6.841781 ACCCATCCCACTTAATATAGTTGT 57.158 37.500 0.00 0.00 0.00 3.32
70 71 7.220890 ACCCATCCCACTTAATATAGTTGTT 57.779 36.000 0.00 0.00 0.00 2.83
71 72 7.287810 ACCCATCCCACTTAATATAGTTGTTC 58.712 38.462 0.00 0.00 0.00 3.18
72 73 7.128883 ACCCATCCCACTTAATATAGTTGTTCT 59.871 37.037 0.00 0.00 0.00 3.01
73 74 8.656806 CCCATCCCACTTAATATAGTTGTTCTA 58.343 37.037 0.00 0.00 0.00 2.10
93 94 9.959721 TGTTCTATTCCTATTATATTCTTGCCC 57.040 33.333 0.00 0.00 0.00 5.36
102 103 9.347240 CCTATTATATTCTTGCCCTATGAATGG 57.653 37.037 0.00 0.00 35.50 3.16
105 106 8.868522 TTATATTCTTGCCCTATGAATGGAAG 57.131 34.615 0.00 0.00 35.50 3.46
106 107 3.582998 TCTTGCCCTATGAATGGAAGG 57.417 47.619 0.00 0.00 0.00 3.46
107 108 3.122480 TCTTGCCCTATGAATGGAAGGA 58.878 45.455 0.00 0.00 31.64 3.36
108 109 3.527253 TCTTGCCCTATGAATGGAAGGAA 59.473 43.478 0.00 0.00 31.64 3.36
109 110 4.017591 TCTTGCCCTATGAATGGAAGGAAA 60.018 41.667 0.00 0.00 31.64 3.13
110 111 3.631250 TGCCCTATGAATGGAAGGAAAC 58.369 45.455 0.00 0.00 31.64 2.78
128 129 7.797038 AGGAAACTTTACACATTTCGTAAGT 57.203 32.000 0.00 0.00 37.44 2.24
129 130 7.636326 AGGAAACTTTACACATTTCGTAAGTG 58.364 34.615 0.00 0.00 37.44 3.16
130 131 7.281549 AGGAAACTTTACACATTTCGTAAGTGT 59.718 33.333 12.11 12.11 43.52 3.55
131 132 8.550376 GGAAACTTTACACATTTCGTAAGTGTA 58.450 33.333 10.71 10.71 44.02 2.90
132 133 9.577003 GAAACTTTACACATTTCGTAAGTGTAG 57.423 33.333 12.90 9.46 45.94 2.74
133 134 8.652810 AACTTTACACATTTCGTAAGTGTAGT 57.347 30.769 12.90 9.86 45.94 2.73
134 135 8.652810 ACTTTACACATTTCGTAAGTGTAGTT 57.347 30.769 12.90 4.58 45.94 2.24
135 136 9.101655 ACTTTACACATTTCGTAAGTGTAGTTT 57.898 29.630 12.90 4.36 45.94 2.66
138 139 7.412137 ACACATTTCGTAAGTGTAGTTTACC 57.588 36.000 7.76 0.00 44.02 2.85
139 140 6.144402 ACACATTTCGTAAGTGTAGTTTACCG 59.856 38.462 7.76 0.00 44.02 4.02
140 141 6.363088 CACATTTCGTAAGTGTAGTTTACCGA 59.637 38.462 0.00 0.00 39.48 4.69
141 142 7.062605 CACATTTCGTAAGTGTAGTTTACCGAT 59.937 37.037 0.00 0.00 39.48 4.18
142 143 7.599998 ACATTTCGTAAGTGTAGTTTACCGATT 59.400 33.333 0.00 0.00 39.48 3.34
143 144 6.932901 TTCGTAAGTGTAGTTTACCGATTG 57.067 37.500 0.00 0.00 39.48 2.67
144 145 6.012658 TCGTAAGTGTAGTTTACCGATTGT 57.987 37.500 0.00 0.00 39.48 2.71
145 146 5.858049 TCGTAAGTGTAGTTTACCGATTGTG 59.142 40.000 0.00 0.00 39.48 3.33
146 147 5.630680 CGTAAGTGTAGTTTACCGATTGTGT 59.369 40.000 0.00 0.00 0.00 3.72
147 148 6.801377 CGTAAGTGTAGTTTACCGATTGTGTA 59.199 38.462 0.00 0.00 0.00 2.90
148 149 7.485913 CGTAAGTGTAGTTTACCGATTGTGTAT 59.514 37.037 0.00 0.00 0.00 2.29
149 150 7.823149 AAGTGTAGTTTACCGATTGTGTATC 57.177 36.000 0.00 0.00 0.00 2.24
150 151 7.166691 AGTGTAGTTTACCGATTGTGTATCT 57.833 36.000 0.00 0.00 0.00 1.98
151 152 7.033791 AGTGTAGTTTACCGATTGTGTATCTG 58.966 38.462 0.00 0.00 0.00 2.90
152 153 7.031372 GTGTAGTTTACCGATTGTGTATCTGA 58.969 38.462 0.00 0.00 0.00 3.27
153 154 7.705325 GTGTAGTTTACCGATTGTGTATCTGAT 59.295 37.037 0.00 0.00 0.00 2.90
154 155 7.919091 TGTAGTTTACCGATTGTGTATCTGATC 59.081 37.037 0.00 0.00 0.00 2.92
155 156 6.873997 AGTTTACCGATTGTGTATCTGATCA 58.126 36.000 0.00 0.00 0.00 2.92
156 157 7.500992 AGTTTACCGATTGTGTATCTGATCAT 58.499 34.615 0.00 0.00 0.00 2.45
157 158 7.987458 AGTTTACCGATTGTGTATCTGATCATT 59.013 33.333 0.00 0.00 0.00 2.57
158 159 8.612619 GTTTACCGATTGTGTATCTGATCATTT 58.387 33.333 0.00 0.00 0.00 2.32
159 160 8.731275 TTACCGATTGTGTATCTGATCATTTT 57.269 30.769 0.00 0.00 0.00 1.82
160 161 7.019774 ACCGATTGTGTATCTGATCATTTTG 57.980 36.000 0.00 0.00 0.00 2.44
161 162 6.038603 ACCGATTGTGTATCTGATCATTTTGG 59.961 38.462 0.00 0.00 0.00 3.28
162 163 6.038603 CCGATTGTGTATCTGATCATTTTGGT 59.961 38.462 0.00 0.00 0.00 3.67
163 164 7.415541 CCGATTGTGTATCTGATCATTTTGGTT 60.416 37.037 0.00 0.00 0.00 3.67
164 165 7.970061 CGATTGTGTATCTGATCATTTTGGTTT 59.030 33.333 0.00 0.00 0.00 3.27
165 166 9.643693 GATTGTGTATCTGATCATTTTGGTTTT 57.356 29.630 0.00 0.00 0.00 2.43
183 184 2.906691 TTTTTCCCCTCACGTACGAA 57.093 45.000 24.41 8.62 0.00 3.85
184 185 3.405823 TTTTTCCCCTCACGTACGAAT 57.594 42.857 24.41 0.00 0.00 3.34
185 186 4.533919 TTTTTCCCCTCACGTACGAATA 57.466 40.909 24.41 5.53 0.00 1.75
186 187 4.533919 TTTTCCCCTCACGTACGAATAA 57.466 40.909 24.41 2.92 0.00 1.40
187 188 3.508744 TTCCCCTCACGTACGAATAAC 57.491 47.619 24.41 0.00 0.00 1.89
188 189 2.726821 TCCCCTCACGTACGAATAACT 58.273 47.619 24.41 0.00 0.00 2.24
189 190 2.424601 TCCCCTCACGTACGAATAACTG 59.575 50.000 24.41 8.71 0.00 3.16
190 191 2.165030 CCCCTCACGTACGAATAACTGT 59.835 50.000 24.41 0.00 0.00 3.55
191 192 3.176708 CCCTCACGTACGAATAACTGTG 58.823 50.000 24.41 7.11 0.00 3.66
192 193 3.366679 CCCTCACGTACGAATAACTGTGT 60.367 47.826 24.41 0.00 0.00 3.72
193 194 4.232221 CCTCACGTACGAATAACTGTGTT 58.768 43.478 24.41 0.00 0.00 3.32
194 195 4.682860 CCTCACGTACGAATAACTGTGTTT 59.317 41.667 24.41 0.00 0.00 2.83
195 196 5.858049 CCTCACGTACGAATAACTGTGTTTA 59.142 40.000 24.41 0.00 0.00 2.01
196 197 6.529125 CCTCACGTACGAATAACTGTGTTTAT 59.471 38.462 24.41 0.00 0.00 1.40
197 198 7.697710 CCTCACGTACGAATAACTGTGTTTATA 59.302 37.037 24.41 0.00 0.00 0.98
198 199 9.229784 CTCACGTACGAATAACTGTGTTTATAT 57.770 33.333 24.41 0.00 0.00 0.86
199 200 9.012448 TCACGTACGAATAACTGTGTTTATATG 57.988 33.333 24.41 2.80 0.00 1.78
200 201 9.012448 CACGTACGAATAACTGTGTTTATATGA 57.988 33.333 24.41 0.00 0.00 2.15
201 202 9.013490 ACGTACGAATAACTGTGTTTATATGAC 57.987 33.333 24.41 0.00 0.00 3.06
202 203 9.229784 CGTACGAATAACTGTGTTTATATGACT 57.770 33.333 10.44 0.00 0.00 3.41
206 207 9.210426 CGAATAACTGTGTTTATATGACTTTGC 57.790 33.333 0.00 0.00 0.00 3.68
216 217 9.853555 TGTTTATATGACTTTGCTATTTGTTGG 57.146 29.630 0.00 0.00 0.00 3.77
217 218 9.855021 GTTTATATGACTTTGCTATTTGTTGGT 57.145 29.630 0.00 0.00 0.00 3.67
218 219 9.853555 TTTATATGACTTTGCTATTTGTTGGTG 57.146 29.630 0.00 0.00 0.00 4.17
219 220 5.789643 ATGACTTTGCTATTTGTTGGTGT 57.210 34.783 0.00 0.00 0.00 4.16
220 221 4.930963 TGACTTTGCTATTTGTTGGTGTG 58.069 39.130 0.00 0.00 0.00 3.82
221 222 4.400884 TGACTTTGCTATTTGTTGGTGTGT 59.599 37.500 0.00 0.00 0.00 3.72
222 223 5.105554 TGACTTTGCTATTTGTTGGTGTGTT 60.106 36.000 0.00 0.00 0.00 3.32
223 224 5.348164 ACTTTGCTATTTGTTGGTGTGTTC 58.652 37.500 0.00 0.00 0.00 3.18
224 225 5.127031 ACTTTGCTATTTGTTGGTGTGTTCT 59.873 36.000 0.00 0.00 0.00 3.01
225 226 5.590530 TTGCTATTTGTTGGTGTGTTCTT 57.409 34.783 0.00 0.00 0.00 2.52
226 227 4.930963 TGCTATTTGTTGGTGTGTTCTTG 58.069 39.130 0.00 0.00 0.00 3.02
227 228 4.400884 TGCTATTTGTTGGTGTGTTCTTGT 59.599 37.500 0.00 0.00 0.00 3.16
228 229 4.739716 GCTATTTGTTGGTGTGTTCTTGTG 59.260 41.667 0.00 0.00 0.00 3.33
229 230 4.799564 ATTTGTTGGTGTGTTCTTGTGT 57.200 36.364 0.00 0.00 0.00 3.72
230 231 3.567576 TTGTTGGTGTGTTCTTGTGTG 57.432 42.857 0.00 0.00 0.00 3.82
231 232 1.201181 TGTTGGTGTGTTCTTGTGTGC 59.799 47.619 0.00 0.00 0.00 4.57
232 233 0.449786 TTGGTGTGTTCTTGTGTGCG 59.550 50.000 0.00 0.00 0.00 5.34
233 234 0.675208 TGGTGTGTTCTTGTGTGCGT 60.675 50.000 0.00 0.00 0.00 5.24
234 235 0.248054 GGTGTGTTCTTGTGTGCGTG 60.248 55.000 0.00 0.00 0.00 5.34
235 236 0.446222 GTGTGTTCTTGTGTGCGTGT 59.554 50.000 0.00 0.00 0.00 4.49
236 237 0.445829 TGTGTTCTTGTGTGCGTGTG 59.554 50.000 0.00 0.00 0.00 3.82
237 238 0.446222 GTGTTCTTGTGTGCGTGTGT 59.554 50.000 0.00 0.00 0.00 3.72
238 239 1.135803 GTGTTCTTGTGTGCGTGTGTT 60.136 47.619 0.00 0.00 0.00 3.32
239 240 1.135831 TGTTCTTGTGTGCGTGTGTTG 60.136 47.619 0.00 0.00 0.00 3.33
240 241 0.449786 TTCTTGTGTGCGTGTGTTGG 59.550 50.000 0.00 0.00 0.00 3.77
241 242 0.675208 TCTTGTGTGCGTGTGTTGGT 60.675 50.000 0.00 0.00 0.00 3.67
242 243 0.523125 CTTGTGTGCGTGTGTTGGTG 60.523 55.000 0.00 0.00 0.00 4.17
243 244 1.237954 TTGTGTGCGTGTGTTGGTGT 61.238 50.000 0.00 0.00 0.00 4.16
244 245 1.237954 TGTGTGCGTGTGTTGGTGTT 61.238 50.000 0.00 0.00 0.00 3.32
245 246 0.796491 GTGTGCGTGTGTTGGTGTTG 60.796 55.000 0.00 0.00 0.00 3.33
246 247 1.226547 GTGCGTGTGTTGGTGTTGG 60.227 57.895 0.00 0.00 0.00 3.77
247 248 1.675972 TGCGTGTGTTGGTGTTGGT 60.676 52.632 0.00 0.00 0.00 3.67
248 249 1.244697 TGCGTGTGTTGGTGTTGGTT 61.245 50.000 0.00 0.00 0.00 3.67
249 250 0.800300 GCGTGTGTTGGTGTTGGTTG 60.800 55.000 0.00 0.00 0.00 3.77
250 251 0.179150 CGTGTGTTGGTGTTGGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
251 252 0.174617 GTGTGTTGGTGTTGGTTGGG 59.825 55.000 0.00 0.00 0.00 4.12
252 253 0.251832 TGTGTTGGTGTTGGTTGGGT 60.252 50.000 0.00 0.00 0.00 4.51
253 254 0.174617 GTGTTGGTGTTGGTTGGGTG 59.825 55.000 0.00 0.00 0.00 4.61
254 255 1.142965 GTTGGTGTTGGTTGGGTGC 59.857 57.895 0.00 0.00 0.00 5.01
255 256 1.305297 TTGGTGTTGGTTGGGTGCA 60.305 52.632 0.00 0.00 0.00 4.57
256 257 0.689080 TTGGTGTTGGTTGGGTGCAT 60.689 50.000 0.00 0.00 0.00 3.96
257 258 1.112315 TGGTGTTGGTTGGGTGCATC 61.112 55.000 0.00 0.00 0.00 3.91
258 259 1.285641 GTGTTGGTTGGGTGCATCG 59.714 57.895 0.00 0.00 0.00 3.84
259 260 1.149401 TGTTGGTTGGGTGCATCGA 59.851 52.632 0.00 0.00 0.00 3.59
260 261 0.251121 TGTTGGTTGGGTGCATCGAT 60.251 50.000 0.00 0.00 0.00 3.59
261 262 0.171007 GTTGGTTGGGTGCATCGATG 59.829 55.000 21.27 21.27 0.00 3.84
262 263 0.251121 TTGGTTGGGTGCATCGATGT 60.251 50.000 25.47 0.00 0.00 3.06
263 264 0.615850 TGGTTGGGTGCATCGATGTA 59.384 50.000 25.47 19.51 0.00 2.29
264 265 1.211703 TGGTTGGGTGCATCGATGTAT 59.788 47.619 25.47 0.00 0.00 2.29
265 266 1.603802 GGTTGGGTGCATCGATGTATG 59.396 52.381 25.47 3.11 0.00 2.39
266 267 2.288666 GTTGGGTGCATCGATGTATGT 58.711 47.619 25.47 0.00 0.00 2.29
267 268 3.462982 GTTGGGTGCATCGATGTATGTA 58.537 45.455 25.47 9.40 0.00 2.29
268 269 4.065088 GTTGGGTGCATCGATGTATGTAT 58.935 43.478 25.47 0.00 0.00 2.29
269 270 4.350368 TGGGTGCATCGATGTATGTATT 57.650 40.909 25.47 0.00 0.00 1.89
270 271 4.064388 TGGGTGCATCGATGTATGTATTG 58.936 43.478 25.47 0.00 0.00 1.90
271 272 4.065088 GGGTGCATCGATGTATGTATTGT 58.935 43.478 25.47 0.00 0.00 2.71
272 273 4.083855 GGGTGCATCGATGTATGTATTGTG 60.084 45.833 25.47 0.00 0.00 3.33
273 274 4.511454 GGTGCATCGATGTATGTATTGTGT 59.489 41.667 25.47 0.00 0.00 3.72
274 275 5.007626 GGTGCATCGATGTATGTATTGTGTT 59.992 40.000 25.47 0.00 0.00 3.32
275 276 5.903530 GTGCATCGATGTATGTATTGTGTTG 59.096 40.000 25.47 0.00 0.00 3.33
276 277 5.007528 TGCATCGATGTATGTATTGTGTTGG 59.992 40.000 25.47 0.00 0.00 3.77
277 278 5.007626 GCATCGATGTATGTATTGTGTTGGT 59.992 40.000 25.47 0.00 0.00 3.67
278 279 6.201997 GCATCGATGTATGTATTGTGTTGGTA 59.798 38.462 25.47 0.00 0.00 3.25
279 280 7.095229 GCATCGATGTATGTATTGTGTTGGTAT 60.095 37.037 25.47 0.00 0.00 2.73
280 281 8.773645 CATCGATGTATGTATTGTGTTGGTATT 58.226 33.333 17.50 0.00 0.00 1.89
281 282 8.360325 TCGATGTATGTATTGTGTTGGTATTC 57.640 34.615 0.00 0.00 0.00 1.75
282 283 8.201464 TCGATGTATGTATTGTGTTGGTATTCT 58.799 33.333 0.00 0.00 0.00 2.40
283 284 8.826710 CGATGTATGTATTGTGTTGGTATTCTT 58.173 33.333 0.00 0.00 0.00 2.52
301 302 9.971922 GGTATTCTTTTGATATTTCATCTTGGG 57.028 33.333 0.00 0.00 0.00 4.12
304 305 8.648698 TTCTTTTGATATTTCATCTTGGGACA 57.351 30.769 0.00 0.00 0.00 4.02
366 367 0.613260 TGGCAGCTACCAACCACTAG 59.387 55.000 2.13 0.00 36.55 2.57
367 368 0.902531 GGCAGCTACCAACCACTAGA 59.097 55.000 0.00 0.00 0.00 2.43
370 371 3.408634 GCAGCTACCAACCACTAGAAAA 58.591 45.455 0.00 0.00 0.00 2.29
372 373 4.083271 GCAGCTACCAACCACTAGAAAAAG 60.083 45.833 0.00 0.00 0.00 2.27
373 374 5.305585 CAGCTACCAACCACTAGAAAAAGA 58.694 41.667 0.00 0.00 0.00 2.52
377 378 7.505923 AGCTACCAACCACTAGAAAAAGAAAAT 59.494 33.333 0.00 0.00 0.00 1.82
378 379 7.595130 GCTACCAACCACTAGAAAAAGAAAATG 59.405 37.037 0.00 0.00 0.00 2.32
379 380 6.280643 ACCAACCACTAGAAAAAGAAAATGC 58.719 36.000 0.00 0.00 0.00 3.56
380 381 6.098266 ACCAACCACTAGAAAAAGAAAATGCT 59.902 34.615 0.00 0.00 0.00 3.79
408 409 0.321564 TCCAACATTCTGGCTGGACG 60.322 55.000 0.00 0.00 36.32 4.79
409 410 1.308069 CCAACATTCTGGCTGGACGG 61.308 60.000 0.00 0.00 29.03 4.79
411 412 0.321653 AACATTCTGGCTGGACGGAC 60.322 55.000 0.00 0.00 0.00 4.79
412 413 1.296392 CATTCTGGCTGGACGGACA 59.704 57.895 0.00 0.00 0.00 4.02
413 414 0.321564 CATTCTGGCTGGACGGACAA 60.322 55.000 0.00 0.00 0.00 3.18
414 415 0.400213 ATTCTGGCTGGACGGACAAA 59.600 50.000 0.00 0.00 0.00 2.83
415 416 0.400213 TTCTGGCTGGACGGACAAAT 59.600 50.000 0.00 0.00 0.00 2.32
416 417 0.321564 TCTGGCTGGACGGACAAATG 60.322 55.000 0.00 0.00 0.00 2.32
495 496 3.901797 GAGGTGTGGGGCAGAACCG 62.902 68.421 0.00 0.00 40.62 4.44
631 652 1.003580 CCTATCCAATCCACCCATCCG 59.996 57.143 0.00 0.00 0.00 4.18
632 653 0.400213 TATCCAATCCACCCATCCGC 59.600 55.000 0.00 0.00 0.00 5.54
633 654 1.355718 ATCCAATCCACCCATCCGCT 61.356 55.000 0.00 0.00 0.00 5.52
635 656 1.526917 CAATCCACCCATCCGCTCC 60.527 63.158 0.00 0.00 0.00 4.70
639 660 4.181010 CACCCATCCGCTCCCCTG 62.181 72.222 0.00 0.00 0.00 4.45
1119 1371 4.742201 GCCTCCTGTTCTCGCGCA 62.742 66.667 8.75 0.00 0.00 6.09
1226 1478 4.154347 GCCGCTCTCAGTCCCCTG 62.154 72.222 0.00 0.00 40.25 4.45
1227 1479 2.681778 CCGCTCTCAGTCCCCTGT 60.682 66.667 0.00 0.00 39.82 4.00
1228 1480 2.286523 CCGCTCTCAGTCCCCTGTT 61.287 63.158 0.00 0.00 39.82 3.16
1229 1481 1.216710 CGCTCTCAGTCCCCTGTTC 59.783 63.158 0.00 0.00 39.82 3.18
1230 1482 1.599576 GCTCTCAGTCCCCTGTTCC 59.400 63.158 0.00 0.00 39.82 3.62
1231 1483 0.907230 GCTCTCAGTCCCCTGTTCCT 60.907 60.000 0.00 0.00 39.82 3.36
1232 1484 1.650528 CTCTCAGTCCCCTGTTCCTT 58.349 55.000 0.00 0.00 39.82 3.36
1233 1485 1.552792 CTCTCAGTCCCCTGTTCCTTC 59.447 57.143 0.00 0.00 39.82 3.46
1234 1486 0.615850 CTCAGTCCCCTGTTCCTTCC 59.384 60.000 0.00 0.00 39.82 3.46
1235 1487 1.192146 TCAGTCCCCTGTTCCTTCCG 61.192 60.000 0.00 0.00 39.82 4.30
1236 1488 1.152096 AGTCCCCTGTTCCTTCCGT 60.152 57.895 0.00 0.00 0.00 4.69
1237 1489 1.192803 AGTCCCCTGTTCCTTCCGTC 61.193 60.000 0.00 0.00 0.00 4.79
1255 1507 6.049955 TCCGTCTGTCCAGATTTTAGATTT 57.950 37.500 0.00 0.00 39.97 2.17
1403 1665 4.201122 GCAGATCCTGGCAGGGGG 62.201 72.222 32.23 19.41 35.59 5.40
1457 1719 4.789123 GGGTACACCGCGGCCATT 62.789 66.667 28.58 9.55 36.71 3.16
1583 1845 3.000819 TTCCCCGACGGCATCACT 61.001 61.111 8.86 0.00 0.00 3.41
1613 1875 4.193826 TCTCATGGACAAGTAAGAGTGC 57.806 45.455 0.00 0.00 0.00 4.40
1633 1895 5.103940 AGTGCCCCACTATCTGTATTGAATT 60.104 40.000 0.00 0.00 43.46 2.17
1867 2136 2.457366 ACTTGCCTCTCGTAACAAGG 57.543 50.000 6.55 0.00 42.97 3.61
1948 2222 6.926826 GTCAAAACCAGGATCCGTTTTAAATT 59.073 34.615 22.45 5.70 39.53 1.82
1974 2248 3.931578 AGTAACAAAGCAGAGCTAGTGG 58.068 45.455 0.00 0.00 38.25 4.00
1985 2259 4.676723 GCAGAGCTAGTGGAAAGTGTAGAG 60.677 50.000 0.00 0.00 0.00 2.43
1986 2260 4.461081 CAGAGCTAGTGGAAAGTGTAGAGT 59.539 45.833 0.00 0.00 0.00 3.24
1988 2262 6.151312 CAGAGCTAGTGGAAAGTGTAGAGTAA 59.849 42.308 0.00 0.00 0.00 2.24
2024 2298 4.910195 TGAACCAGTGCAGAATTCTATGT 58.090 39.130 7.86 0.00 0.00 2.29
2066 2340 5.700722 TTGTCTACTCTTTTGCTCTACGA 57.299 39.130 0.00 0.00 0.00 3.43
2351 2625 4.058817 CACTGTACAAGGGTCAAGTTCTC 58.941 47.826 0.00 0.00 0.00 2.87
2366 2640 4.796231 CTCGCGGTCGTTGGAGGG 62.796 72.222 6.13 0.00 36.96 4.30
2390 2664 1.681793 GATACAGCTACCGAGGAAGCA 59.318 52.381 0.00 0.00 41.32 3.91
2438 2712 6.567701 GCCATGTTCATTTACTTGTTCGAAGA 60.568 38.462 0.00 0.00 0.00 2.87
2487 2761 0.831307 GGACCGGTAAGGCATTCTCT 59.169 55.000 7.34 0.00 46.52 3.10
2492 2766 3.518303 ACCGGTAAGGCATTCTCTAAGTT 59.482 43.478 4.49 0.00 46.52 2.66
2493 2767 4.019591 ACCGGTAAGGCATTCTCTAAGTTT 60.020 41.667 4.49 0.00 46.52 2.66
2564 2838 8.779354 AGTCTTACCTGTTCATGTAAATCTTC 57.221 34.615 0.00 0.00 0.00 2.87
2565 2839 7.545965 AGTCTTACCTGTTCATGTAAATCTTCG 59.454 37.037 0.00 0.00 0.00 3.79
2578 2852 1.972872 ATCTTCGGTCCATGGATTGC 58.027 50.000 19.62 4.84 0.00 3.56
2623 2897 6.591834 AGTGTTAGCATCAGTTGATACTTGAC 59.408 38.462 0.47 2.29 31.11 3.18
2625 2899 6.934083 TGTTAGCATCAGTTGATACTTGACAA 59.066 34.615 0.47 0.00 31.11 3.18
2651 2925 7.704899 ACTTAAACAACTGTAAAAGGAATGCAC 59.295 33.333 0.00 0.00 0.00 4.57
2668 2942 4.695217 TGCACGATTATTTTTCCACCTC 57.305 40.909 0.00 0.00 0.00 3.85
2689 2963 8.755941 CACCTCTCATCTATTGTAAATAACGTG 58.244 37.037 0.00 0.00 0.00 4.49
2764 3038 7.962441 AGCTTCCACTTTAAAATGTTGGTTAT 58.038 30.769 0.00 0.00 0.00 1.89
2766 3040 9.353999 GCTTCCACTTTAAAATGTTGGTTATAG 57.646 33.333 0.00 0.00 0.00 1.31
2778 3052 2.020720 TGGTTATAGCGGCACAATTGG 58.979 47.619 10.83 0.00 0.00 3.16
2793 3068 6.021596 GCACAATTGGTCTTCGTTAATACTG 58.978 40.000 10.83 0.00 0.00 2.74
2798 3073 8.394877 CAATTGGTCTTCGTTAATACTGCAATA 58.605 33.333 0.00 0.00 0.00 1.90
3066 3397 1.062002 GTGGATGTTGTCGGCAATACG 59.938 52.381 5.40 0.00 36.92 3.06
3231 3562 7.725397 TCTGGATATATTTTGGTTGATGAAGGG 59.275 37.037 0.00 0.00 0.00 3.95
3315 3646 7.503566 TCCTTCATTGAATGTCTGAAACTTCTT 59.496 33.333 4.93 0.00 0.00 2.52
3333 3664 8.450578 AACTTCTTCATGATTGTAAAGTGTGA 57.549 30.769 0.00 0.00 0.00 3.58
3347 3678 2.627945 AGTGTGACGCTTGAAGAAACA 58.372 42.857 0.00 0.00 0.00 2.83
3380 3711 1.065851 TGTTGCAGTTCATGTGTGCTG 59.934 47.619 14.69 9.84 38.09 4.41
3397 3728 1.539496 GCTGTCACCTCACCACGTTAA 60.539 52.381 0.00 0.00 0.00 2.01
3399 3730 2.993899 CTGTCACCTCACCACGTTAATC 59.006 50.000 0.00 0.00 0.00 1.75
3400 3731 2.289195 TGTCACCTCACCACGTTAATCC 60.289 50.000 0.00 0.00 0.00 3.01
3422 3754 3.396560 TGTAGCATGCTAGCACATCATC 58.603 45.455 27.54 12.75 36.85 2.92
3477 3809 3.879998 TCCGCAGTGAAAGGCAATATAA 58.120 40.909 0.00 0.00 0.00 0.98
3484 3816 7.463119 CGCAGTGAAAGGCAATATAATTTGTTG 60.463 37.037 0.00 0.00 0.00 3.33
3494 3826 9.722056 GGCAATATAATTTGTTGTCTAAGACAG 57.278 33.333 0.00 0.00 43.69 3.51
3518 3850 5.091261 AGACTTGTACCCACTCATCATTC 57.909 43.478 0.00 0.00 0.00 2.67
3536 3868 7.819415 TCATCATTCGATACCTATCCATGAAAC 59.181 37.037 0.00 0.00 34.84 2.78
3585 3917 3.627395 TTCAGCCCGTTATCATGAACT 57.373 42.857 0.00 0.00 0.00 3.01
3590 3922 5.095490 CAGCCCGTTATCATGAACTTTTTC 58.905 41.667 0.00 0.00 0.00 2.29
3593 3925 5.335661 GCCCGTTATCATGAACTTTTTCTGT 60.336 40.000 0.00 0.00 32.36 3.41
3794 4157 3.068560 GCATTTGCCAGCTTCATTTTGA 58.931 40.909 0.00 0.00 34.31 2.69
3819 4182 4.819088 TGGTCGTCATTGTCTCAATGAAAA 59.181 37.500 21.40 12.66 38.27 2.29
3851 4214 7.789831 TCTTACCCTATGAATATCACTGGTCTT 59.210 37.037 0.00 0.00 30.59 3.01
3854 4217 6.560304 ACCCTATGAATATCACTGGTCTTCAT 59.440 38.462 7.76 7.76 39.28 2.57
3881 4244 3.291584 TGGGTGTTGCAGTAATTTGTGA 58.708 40.909 0.00 0.00 0.00 3.58
4040 4411 9.376075 ACTGTGAGTTGATATGTTCTGAATAAG 57.624 33.333 0.00 0.00 0.00 1.73
4056 4427 7.874940 TCTGAATAAGAATTTGTGACCTTGTG 58.125 34.615 0.00 0.00 29.54 3.33
4153 4524 8.296713 GCTTATCTTCTGTAACAACCAATCAAA 58.703 33.333 0.00 0.00 0.00 2.69
4298 4774 5.648092 GGGACAGGTGCCAAACATATATATC 59.352 44.000 4.98 0.00 41.16 1.63
4300 4776 6.454223 ACAGGTGCCAAACATATATATCCT 57.546 37.500 0.00 0.00 0.00 3.24
4321 4797 5.128171 TCCTTAGTGTGCCTCATATAAACGT 59.872 40.000 0.00 0.00 0.00 3.99
4482 4958 7.763985 ACCAATTTTGAACAAGGTTAGTTCTTG 59.236 33.333 7.47 0.00 44.30 3.02
4523 4999 8.779354 ACTTTGAACATCTTAACATCTACTCC 57.221 34.615 0.00 0.00 0.00 3.85
4524 5000 7.824779 ACTTTGAACATCTTAACATCTACTCCC 59.175 37.037 0.00 0.00 0.00 4.30
4525 5001 7.496346 TTGAACATCTTAACATCTACTCCCT 57.504 36.000 0.00 0.00 0.00 4.20
4526 5002 7.113658 TGAACATCTTAACATCTACTCCCTC 57.886 40.000 0.00 0.00 0.00 4.30
4527 5003 6.098409 TGAACATCTTAACATCTACTCCCTCC 59.902 42.308 0.00 0.00 0.00 4.30
4528 5004 4.585162 ACATCTTAACATCTACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
4529 5005 4.246712 TCTTAACATCTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
4530 5006 4.607239 TCTTAACATCTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
4531 5007 4.643784 TCTTAACATCTACTCCCTCCGTTC 59.356 45.833 0.00 0.00 0.00 3.95
4532 5008 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
4533 5009 0.669077 CATCTACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
4534 5010 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
4535 5011 0.549950 TCTACTCCCTCCGTTCCGAT 59.450 55.000 0.00 0.00 0.00 4.18
4536 5012 1.064166 TCTACTCCCTCCGTTCCGATT 60.064 52.381 0.00 0.00 0.00 3.34
4537 5013 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
4538 5014 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
4539 5015 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
4540 5016 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
4541 5017 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
4543 5019 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
4544 5020 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
4545 5021 2.086869 TCCGTTCCGATTTACTCGTCT 58.913 47.619 0.00 0.00 46.18 4.18
4546 5022 2.489329 TCCGTTCCGATTTACTCGTCTT 59.511 45.455 0.00 0.00 46.18 3.01
4547 5023 2.597305 CCGTTCCGATTTACTCGTCTTG 59.403 50.000 0.00 0.00 46.18 3.02
4548 5024 2.597305 CGTTCCGATTTACTCGTCTTGG 59.403 50.000 0.00 0.00 46.18 3.61
4549 5025 3.582780 GTTCCGATTTACTCGTCTTGGT 58.417 45.455 0.00 0.00 46.18 3.67
4550 5026 3.947910 TCCGATTTACTCGTCTTGGTT 57.052 42.857 0.00 0.00 46.18 3.67
4551 5027 4.261578 TCCGATTTACTCGTCTTGGTTT 57.738 40.909 0.00 0.00 46.18 3.27
4552 5028 4.634199 TCCGATTTACTCGTCTTGGTTTT 58.366 39.130 0.00 0.00 46.18 2.43
4553 5029 5.782047 TCCGATTTACTCGTCTTGGTTTTA 58.218 37.500 0.00 0.00 46.18 1.52
4554 5030 5.865552 TCCGATTTACTCGTCTTGGTTTTAG 59.134 40.000 0.00 0.00 46.18 1.85
4555 5031 5.636543 CCGATTTACTCGTCTTGGTTTTAGT 59.363 40.000 0.00 0.00 46.18 2.24
4556 5032 6.146673 CCGATTTACTCGTCTTGGTTTTAGTT 59.853 38.462 0.00 0.00 46.18 2.24
4557 5033 7.329226 CCGATTTACTCGTCTTGGTTTTAGTTA 59.671 37.037 0.00 0.00 46.18 2.24
4558 5034 8.702438 CGATTTACTCGTCTTGGTTTTAGTTAA 58.298 33.333 0.00 0.00 42.56 2.01
4564 5040 9.511144 ACTCGTCTTGGTTTTAGTTAAAATTTG 57.489 29.630 0.00 0.00 37.48 2.32
4565 5041 9.724839 CTCGTCTTGGTTTTAGTTAAAATTTGA 57.275 29.630 0.00 0.00 37.48 2.69
4582 5058 8.982925 AAAATTTGAACTAAAACTACGACGAG 57.017 30.769 0.00 0.00 0.00 4.18
4583 5059 7.704789 AATTTGAACTAAAACTACGACGAGT 57.295 32.000 0.00 0.00 0.00 4.18
4584 5060 8.801715 AATTTGAACTAAAACTACGACGAGTA 57.198 30.769 0.00 0.00 0.00 2.59
4585 5061 8.801715 ATTTGAACTAAAACTACGACGAGTAA 57.198 30.769 0.00 0.00 34.45 2.24
4586 5062 8.627487 TTTGAACTAAAACTACGACGAGTAAA 57.373 30.769 0.00 0.00 34.45 2.01
4587 5063 8.801715 TTGAACTAAAACTACGACGAGTAAAT 57.198 30.769 0.00 0.00 34.45 1.40
4588 5064 9.891828 TTGAACTAAAACTACGACGAGTAAATA 57.108 29.630 0.00 0.00 34.45 1.40
4589 5065 9.546909 TGAACTAAAACTACGACGAGTAAATAG 57.453 33.333 0.00 7.06 34.45 1.73
4590 5066 8.902040 AACTAAAACTACGACGAGTAAATAGG 57.098 34.615 0.00 0.00 34.45 2.57
4591 5067 8.268850 ACTAAAACTACGACGAGTAAATAGGA 57.731 34.615 0.00 0.00 34.45 2.94
4592 5068 8.730680 ACTAAAACTACGACGAGTAAATAGGAA 58.269 33.333 0.00 0.00 34.45 3.36
4593 5069 7.803079 AAAACTACGACGAGTAAATAGGAAC 57.197 36.000 0.00 0.00 34.45 3.62
4594 5070 5.149054 ACTACGACGAGTAAATAGGAACG 57.851 43.478 0.00 0.00 34.45 3.95
4595 5071 3.411415 ACGACGAGTAAATAGGAACGG 57.589 47.619 0.00 0.00 0.00 4.44
4596 5072 3.009723 ACGACGAGTAAATAGGAACGGA 58.990 45.455 0.00 0.00 0.00 4.69
4597 5073 3.064545 ACGACGAGTAAATAGGAACGGAG 59.935 47.826 0.00 0.00 0.00 4.63
4598 5074 3.547613 CGACGAGTAAATAGGAACGGAGG 60.548 52.174 0.00 0.00 0.00 4.30
4599 5075 2.692041 ACGAGTAAATAGGAACGGAGGG 59.308 50.000 0.00 0.00 0.00 4.30
4600 5076 2.954318 CGAGTAAATAGGAACGGAGGGA 59.046 50.000 0.00 0.00 0.00 4.20
4601 5077 3.004524 CGAGTAAATAGGAACGGAGGGAG 59.995 52.174 0.00 0.00 0.00 4.30
4602 5078 3.959449 GAGTAAATAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
4603 5079 5.134725 AGTAAATAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
4604 5080 4.892345 AGTAAATAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
4605 5081 3.684408 AATAGGAACGGAGGGAGTACT 57.316 47.619 0.00 0.00 0.00 2.73
4606 5082 3.684408 ATAGGAACGGAGGGAGTACTT 57.316 47.619 0.00 0.00 0.00 2.24
4607 5083 4.803329 ATAGGAACGGAGGGAGTACTTA 57.197 45.455 0.00 0.00 0.00 2.24
4608 5084 3.463048 AGGAACGGAGGGAGTACTTAA 57.537 47.619 0.00 0.00 0.00 1.85
4609 5085 3.782992 AGGAACGGAGGGAGTACTTAAA 58.217 45.455 0.00 0.00 0.00 1.52
4610 5086 4.359996 AGGAACGGAGGGAGTACTTAAAT 58.640 43.478 0.00 0.00 0.00 1.40
4614 5090 7.038088 AGGAACGGAGGGAGTACTTAAATAAAA 60.038 37.037 0.00 0.00 0.00 1.52
4644 5120 9.167311 CTTGTCAGCAACCTTAAATCTAGTTAT 57.833 33.333 0.00 0.00 0.00 1.89
4731 5210 2.940410 GTGGTTTCCTTTGACGACTGAA 59.060 45.455 0.00 0.00 0.00 3.02
4806 5285 1.525535 AGCATGCCGGAGCTCAATC 60.526 57.895 15.66 3.71 36.00 2.67
4895 5374 6.041511 TGAAACACACCAAATGAATTGAGTG 58.958 36.000 10.20 10.20 43.96 3.51
4941 5420 5.402997 TTGCATTGTGGCATTTATGAAGA 57.597 34.783 9.66 0.00 44.48 2.87
5041 5520 1.820906 CCCTCCACACATGCATCGG 60.821 63.158 0.00 0.00 0.00 4.18
5048 5527 3.761218 TCCACACATGCATCGGTTAATTT 59.239 39.130 0.00 0.00 0.00 1.82
5057 5536 8.345565 ACATGCATCGGTTAATTTCTAAATCTC 58.654 33.333 0.00 0.00 0.00 2.75
5090 5569 3.988379 ACACACACTGCTAAACAATGG 57.012 42.857 0.00 0.00 26.83 3.16
5091 5570 3.287222 ACACACACTGCTAAACAATGGT 58.713 40.909 0.00 0.00 26.83 3.55
5092 5571 4.456535 ACACACACTGCTAAACAATGGTA 58.543 39.130 0.00 0.00 26.83 3.25
5093 5572 4.515191 ACACACACTGCTAAACAATGGTAG 59.485 41.667 0.00 0.00 26.83 3.18
5094 5573 4.515191 CACACACTGCTAAACAATGGTAGT 59.485 41.667 0.00 0.00 26.83 2.73
5095 5574 4.755123 ACACACTGCTAAACAATGGTAGTC 59.245 41.667 0.00 0.00 26.83 2.59
5096 5575 4.154195 CACACTGCTAAACAATGGTAGTCC 59.846 45.833 0.00 0.00 26.83 3.85
5110 5589 4.584874 TGGTAGTCCACACATTACATTGG 58.415 43.478 0.00 0.00 39.03 3.16
5111 5590 4.287326 TGGTAGTCCACACATTACATTGGA 59.713 41.667 0.00 0.00 39.03 3.53
5229 7657 3.191078 AGCTGATGGACTGTTCTATGC 57.809 47.619 0.00 0.00 0.00 3.14
5237 7665 3.019564 GGACTGTTCTATGCCAGCAATT 58.980 45.455 0.00 0.00 31.76 2.32
5353 7781 4.178861 GCGTCATCACAGCGGTAA 57.821 55.556 0.00 0.00 0.00 2.85
5403 7831 5.080969 TCGGTGGTAAGAGTTTAATCTGG 57.919 43.478 0.00 0.00 0.00 3.86
5407 7835 5.816258 GGTGGTAAGAGTTTAATCTGGTAGC 59.184 44.000 0.00 0.00 0.00 3.58
5414 7842 3.447586 AGTTTAATCTGGTAGCTGCTCGA 59.552 43.478 4.91 0.00 0.00 4.04
5415 7843 3.438297 TTAATCTGGTAGCTGCTCGAC 57.562 47.619 4.91 0.00 0.00 4.20
5435 7863 2.990967 CCATTGGGTGCGGCACTT 60.991 61.111 29.92 11.91 34.40 3.16
5482 7958 4.713824 TGGACTACATACGGACTGAAAG 57.286 45.455 0.00 0.00 42.29 2.62
5514 7990 7.844482 ACAAACACACTAAAACGTGTCTATAC 58.156 34.615 0.00 0.00 45.74 1.47
5516 7992 8.492748 CAAACACACTAAAACGTGTCTATACAT 58.507 33.333 0.00 0.00 45.74 2.29
5517 7993 7.807687 ACACACTAAAACGTGTCTATACATC 57.192 36.000 0.00 0.00 45.74 3.06
5519 7995 7.541091 ACACACTAAAACGTGTCTATACATCTG 59.459 37.037 0.00 0.00 45.74 2.90
5520 7996 7.753580 CACACTAAAACGTGTCTATACATCTGA 59.246 37.037 0.00 0.00 45.74 3.27
5521 7997 8.467598 ACACTAAAACGTGTCTATACATCTGAT 58.532 33.333 0.00 0.00 44.32 2.90
5522 7998 9.302345 CACTAAAACGTGTCTATACATCTGATT 57.698 33.333 0.00 0.00 38.08 2.57
5523 7999 9.517609 ACTAAAACGTGTCTATACATCTGATTC 57.482 33.333 0.00 0.00 38.08 2.52
5524 8000 9.516314 CTAAAACGTGTCTATACATCTGATTCA 57.484 33.333 0.00 0.00 38.08 2.57
5525 8001 7.993821 AAACGTGTCTATACATCTGATTCAG 57.006 36.000 7.38 7.38 38.08 3.02
5577 8054 3.705051 ACGGAGGGAGTACATAAGTTCA 58.295 45.455 0.00 0.00 0.00 3.18
5585 8062 6.659242 AGGGAGTACATAAGTTCACAATTTGG 59.341 38.462 0.78 0.00 0.00 3.28
5593 8070 5.852282 AAGTTCACAATTTGGTACAGCTT 57.148 34.783 0.78 0.00 42.39 3.74
5651 8145 5.756195 TGTTGCTTGCTGATAATGATACC 57.244 39.130 0.00 0.00 0.00 2.73
5660 8154 6.470278 TGCTGATAATGATACCTCATCCTTG 58.530 40.000 0.00 0.00 41.34 3.61
5783 8277 2.172851 TAATGGGAACACCGTGTGTC 57.827 50.000 4.57 5.28 46.79 3.67
5792 8286 1.217882 CACCGTGTGTCCAGTTCTTC 58.782 55.000 0.00 0.00 0.00 2.87
5871 8365 0.035176 ACTACGGCCGCAACCTAAAA 59.965 50.000 28.58 0.00 0.00 1.52
5902 8396 4.993028 ACCTAAACATTGGGTTAGCTGAA 58.007 39.130 0.00 0.00 42.45 3.02
5906 8400 7.839200 ACCTAAACATTGGGTTAGCTGAAATAT 59.161 33.333 0.00 0.00 42.45 1.28
5956 8450 0.391130 TGCTCTATGACGGCAACCAC 60.391 55.000 0.00 0.00 32.79 4.16
5965 8459 1.002142 GACGGCAACCACTTTTGTACC 60.002 52.381 0.00 0.00 0.00 3.34
5967 8461 1.679153 CGGCAACCACTTTTGTACCTT 59.321 47.619 0.00 0.00 0.00 3.50
5980 8474 9.840427 CACTTTTGTACCTTTACATAATTCCAG 57.160 33.333 0.00 0.00 38.05 3.86
6078 8572 4.821805 CGGGTTCTGCTGGAATTACATATT 59.178 41.667 0.00 0.00 36.24 1.28
6130 8624 4.940046 CACAGGCTTAAGTTGAGATGTCAT 59.060 41.667 13.74 0.00 30.85 3.06
6162 8656 3.663995 TGAGGCCAAAACACATGAATG 57.336 42.857 5.01 0.00 0.00 2.67
6165 8659 2.030007 AGGCCAAAACACATGAATGACG 60.030 45.455 5.01 0.00 0.00 4.35
6239 8734 6.821665 CCATCTTCTTTCATGAATGCCATTTT 59.178 34.615 9.40 0.00 31.94 1.82
6274 8769 2.026822 AGGACAGTTGGCAGGATAAGTG 60.027 50.000 0.00 0.00 34.28 3.16
6295 8947 2.872245 GTGCTCTCTTTGCAAGTACACA 59.128 45.455 0.00 0.00 42.41 3.72
6317 8969 7.151976 CACATCTTAATCGTGACATATGGGTA 58.848 38.462 7.80 0.00 32.23 3.69
6319 8971 6.971726 TCTTAATCGTGACATATGGGTAGT 57.028 37.500 7.80 0.00 0.00 2.73
6381 9033 6.094881 GGAATTTCTCCCAAATATGTCGAACA 59.905 38.462 0.00 0.00 38.44 3.18
6394 9046 0.391661 TCGAACATCTCTTGGGCAGC 60.392 55.000 0.00 0.00 0.00 5.25
6407 9059 2.282745 GCAGCTTGCAGAACCCCT 60.283 61.111 3.64 0.00 44.26 4.79
6457 9109 2.039084 CAGGCCCACCCTTCTGATATAC 59.961 54.545 0.00 0.00 43.06 1.47
6644 9297 5.066593 GGTGGGCAATTTTTGGTCAAATTA 58.933 37.500 0.00 0.00 35.09 1.40
6663 9316 0.622136 ATCAGATGAGCCTGGTGCAA 59.378 50.000 0.00 0.00 44.83 4.08
6761 9414 1.288188 TGACCCCTTGCTCATGATCA 58.712 50.000 0.00 0.00 0.00 2.92
6800 9462 7.982354 GCATACCTCTTTATGTCTTTACTCAGT 59.018 37.037 0.00 0.00 32.76 3.41
6803 9465 8.418597 ACCTCTTTATGTCTTTACTCAGTACA 57.581 34.615 0.00 0.00 0.00 2.90
6804 9466 8.524487 ACCTCTTTATGTCTTTACTCAGTACAG 58.476 37.037 0.00 0.00 0.00 2.74
6845 9508 3.357203 TGTCAACACAACTTTAAGGGCA 58.643 40.909 0.00 0.00 0.00 5.36
6847 9510 7.671620 CTGTCAACACAACTTTAAGGGCACC 62.672 48.000 0.00 0.00 40.25 5.01
6859 9522 2.472909 GGGCACCGCTATTGACAGC 61.473 63.158 0.00 0.00 40.86 4.40
6874 9537 3.937814 TGACAGCCGTTTCATGTCTATT 58.062 40.909 6.17 0.00 42.99 1.73
6876 9539 3.932710 GACAGCCGTTTCATGTCTATTCA 59.067 43.478 0.00 0.00 40.14 2.57
6881 9544 4.516698 GCCGTTTCATGTCTATTCATCCAT 59.483 41.667 0.00 0.00 0.00 3.41
6889 9552 5.830799 TGTCTATTCATCCATATGGTGCT 57.169 39.130 21.28 11.33 36.34 4.40
6901 9564 2.777832 ATGGTGCTCTCTGTCTTTCC 57.222 50.000 0.00 0.00 0.00 3.13
6910 9573 3.264845 TGTCTTTCCCCTGCCCCC 61.265 66.667 0.00 0.00 0.00 5.40
6912 9575 2.614013 TCTTTCCCCTGCCCCCTC 60.614 66.667 0.00 0.00 0.00 4.30
6913 9576 3.744155 CTTTCCCCTGCCCCCTCC 61.744 72.222 0.00 0.00 0.00 4.30
6914 9577 4.301662 TTTCCCCTGCCCCCTCCT 62.302 66.667 0.00 0.00 0.00 3.69
6915 9578 2.857998 CTTTCCCCTGCCCCCTCCTA 62.858 65.000 0.00 0.00 0.00 2.94
6916 9579 2.222357 TTTCCCCTGCCCCCTCCTAT 62.222 60.000 0.00 0.00 0.00 2.57
6918 9581 2.530406 CCCTGCCCCCTCCTATCC 60.530 72.222 0.00 0.00 0.00 2.59
7038 9709 3.128845 CGGCGCCCACGGTATTTT 61.129 61.111 23.46 0.00 40.57 1.82
7066 9737 0.377554 TAAACACGGCACAAACACGG 59.622 50.000 0.00 0.00 0.00 4.94
7067 9738 1.587933 AAACACGGCACAAACACGGT 61.588 50.000 0.00 0.00 0.00 4.83
7068 9739 2.024022 CACGGCACAAACACGGTG 59.976 61.111 6.58 6.58 39.25 4.94
7077 9748 3.122297 CACAAACACGGTGCAAATTCAT 58.878 40.909 8.30 0.00 0.00 2.57
7078 9749 4.294232 CACAAACACGGTGCAAATTCATA 58.706 39.130 8.30 0.00 0.00 2.15
7085 9756 4.626604 CACGGTGCAAATTCATAGCAAATT 59.373 37.500 0.00 0.00 40.35 1.82
7257 9959 3.396570 CCCCGCCTAAACCTCCGT 61.397 66.667 0.00 0.00 0.00 4.69
7415 10123 4.436998 CACTGCCGGACCGTCTCC 62.437 72.222 13.94 0.00 35.33 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.978044 CTGAGATGACATGTATCTTCAATTCTA 57.022 33.333 14.85 0.00 35.14 2.10
8 9 8.702819 TCTGAGATGACATGTATCTTCAATTCT 58.297 33.333 14.85 4.18 35.14 2.40
9 10 8.883954 TCTGAGATGACATGTATCTTCAATTC 57.116 34.615 14.85 5.84 35.14 2.17
10 11 9.274206 CATCTGAGATGACATGTATCTTCAATT 57.726 33.333 17.28 0.00 35.14 2.32
11 12 8.648693 TCATCTGAGATGACATGTATCTTCAAT 58.351 33.333 20.51 8.79 35.14 2.57
12 13 7.924947 GTCATCTGAGATGACATGTATCTTCAA 59.075 37.037 37.39 8.35 45.61 2.69
13 14 7.432059 GTCATCTGAGATGACATGTATCTTCA 58.568 38.462 37.39 8.75 45.61 3.02
14 15 7.872163 GTCATCTGAGATGACATGTATCTTC 57.128 40.000 37.39 15.90 45.61 2.87
24 25 5.982516 GGTTAGACATGTCATCTGAGATGAC 59.017 44.000 36.42 36.42 45.46 3.06
25 26 5.069648 GGGTTAGACATGTCATCTGAGATGA 59.930 44.000 27.02 20.51 45.46 2.92
27 28 4.964897 TGGGTTAGACATGTCATCTGAGAT 59.035 41.667 27.02 6.90 0.00 2.75
28 29 4.352893 TGGGTTAGACATGTCATCTGAGA 58.647 43.478 27.02 3.20 0.00 3.27
29 30 4.743057 TGGGTTAGACATGTCATCTGAG 57.257 45.455 27.02 0.00 0.00 3.35
30 31 4.101585 GGATGGGTTAGACATGTCATCTGA 59.898 45.833 27.02 7.22 33.59 3.27
31 32 4.384056 GGATGGGTTAGACATGTCATCTG 58.616 47.826 27.02 0.00 33.59 2.90
32 33 3.392616 GGGATGGGTTAGACATGTCATCT 59.607 47.826 27.02 9.85 33.59 2.90
33 34 3.136443 TGGGATGGGTTAGACATGTCATC 59.864 47.826 27.02 18.81 0.00 2.92
34 35 3.117888 GTGGGATGGGTTAGACATGTCAT 60.118 47.826 27.02 11.61 0.00 3.06
35 36 2.238646 GTGGGATGGGTTAGACATGTCA 59.761 50.000 27.02 10.87 0.00 3.58
36 37 2.505819 AGTGGGATGGGTTAGACATGTC 59.494 50.000 18.47 18.47 0.00 3.06
37 38 2.562296 AGTGGGATGGGTTAGACATGT 58.438 47.619 0.00 0.00 0.00 3.21
38 39 3.652057 AAGTGGGATGGGTTAGACATG 57.348 47.619 0.00 0.00 0.00 3.21
39 40 5.994416 ATTAAGTGGGATGGGTTAGACAT 57.006 39.130 0.00 0.00 0.00 3.06
40 41 7.792736 ACTATATTAAGTGGGATGGGTTAGACA 59.207 37.037 0.00 0.00 0.00 3.41
41 42 8.203681 ACTATATTAAGTGGGATGGGTTAGAC 57.796 38.462 0.00 0.00 0.00 2.59
42 43 8.656806 CAACTATATTAAGTGGGATGGGTTAGA 58.343 37.037 0.00 0.00 0.00 2.10
43 44 8.437575 ACAACTATATTAAGTGGGATGGGTTAG 58.562 37.037 0.00 0.00 0.00 2.34
44 45 8.339720 ACAACTATATTAAGTGGGATGGGTTA 57.660 34.615 0.00 0.00 0.00 2.85
45 46 7.220890 ACAACTATATTAAGTGGGATGGGTT 57.779 36.000 0.00 0.00 0.00 4.11
46 47 6.841781 ACAACTATATTAAGTGGGATGGGT 57.158 37.500 0.00 0.00 0.00 4.51
47 48 7.518188 AGAACAACTATATTAAGTGGGATGGG 58.482 38.462 0.00 0.00 0.00 4.00
67 68 9.959721 GGGCAAGAATATAATAGGAATAGAACA 57.040 33.333 0.00 0.00 0.00 3.18
76 77 9.347240 CCATTCATAGGGCAAGAATATAATAGG 57.653 37.037 0.00 0.00 31.26 2.57
79 80 9.471702 CTTCCATTCATAGGGCAAGAATATAAT 57.528 33.333 0.00 0.00 31.26 1.28
80 81 7.890127 CCTTCCATTCATAGGGCAAGAATATAA 59.110 37.037 0.00 0.00 31.26 0.98
81 82 7.239563 TCCTTCCATTCATAGGGCAAGAATATA 59.760 37.037 0.00 0.00 31.26 0.86
82 83 6.045931 TCCTTCCATTCATAGGGCAAGAATAT 59.954 38.462 0.00 0.00 31.26 1.28
83 84 5.372363 TCCTTCCATTCATAGGGCAAGAATA 59.628 40.000 0.00 0.00 31.26 1.75
84 85 4.168675 TCCTTCCATTCATAGGGCAAGAAT 59.831 41.667 0.00 0.00 32.53 2.40
85 86 3.527253 TCCTTCCATTCATAGGGCAAGAA 59.473 43.478 0.00 0.00 0.00 2.52
86 87 3.122480 TCCTTCCATTCATAGGGCAAGA 58.878 45.455 0.00 0.00 0.00 3.02
87 88 3.582998 TCCTTCCATTCATAGGGCAAG 57.417 47.619 0.00 0.00 0.00 4.01
88 89 4.023291 GTTTCCTTCCATTCATAGGGCAA 58.977 43.478 0.00 0.00 0.00 4.52
89 90 3.269381 AGTTTCCTTCCATTCATAGGGCA 59.731 43.478 0.00 0.00 0.00 5.36
90 91 3.903467 AGTTTCCTTCCATTCATAGGGC 58.097 45.455 0.00 0.00 0.00 5.19
91 92 6.889722 TGTAAAGTTTCCTTCCATTCATAGGG 59.110 38.462 0.00 0.00 0.00 3.53
92 93 7.393234 TGTGTAAAGTTTCCTTCCATTCATAGG 59.607 37.037 0.00 0.00 0.00 2.57
93 94 8.335532 TGTGTAAAGTTTCCTTCCATTCATAG 57.664 34.615 0.00 0.00 0.00 2.23
94 95 8.877864 ATGTGTAAAGTTTCCTTCCATTCATA 57.122 30.769 0.00 0.00 0.00 2.15
95 96 7.781324 ATGTGTAAAGTTTCCTTCCATTCAT 57.219 32.000 0.00 0.00 0.00 2.57
96 97 7.595819 AATGTGTAAAGTTTCCTTCCATTCA 57.404 32.000 0.00 0.00 0.00 2.57
97 98 7.326063 CGAAATGTGTAAAGTTTCCTTCCATTC 59.674 37.037 0.00 0.00 0.00 2.67
98 99 7.145323 CGAAATGTGTAAAGTTTCCTTCCATT 58.855 34.615 0.00 0.00 0.00 3.16
99 100 6.264518 ACGAAATGTGTAAAGTTTCCTTCCAT 59.735 34.615 0.00 0.00 0.00 3.41
100 101 5.591067 ACGAAATGTGTAAAGTTTCCTTCCA 59.409 36.000 0.00 0.00 0.00 3.53
101 102 6.068473 ACGAAATGTGTAAAGTTTCCTTCC 57.932 37.500 0.00 0.00 0.00 3.46
102 103 8.340443 ACTTACGAAATGTGTAAAGTTTCCTTC 58.660 33.333 0.00 0.00 31.86 3.46
103 104 8.126700 CACTTACGAAATGTGTAAAGTTTCCTT 58.873 33.333 0.00 0.00 31.86 3.36
104 105 7.281549 ACACTTACGAAATGTGTAAAGTTTCCT 59.718 33.333 10.73 0.00 42.26 3.36
105 106 7.412063 ACACTTACGAAATGTGTAAAGTTTCC 58.588 34.615 10.73 0.00 42.26 3.13
106 107 9.577003 CTACACTTACGAAATGTGTAAAGTTTC 57.423 33.333 16.13 0.00 43.62 2.78
107 108 9.101655 ACTACACTTACGAAATGTGTAAAGTTT 57.898 29.630 16.13 0.00 43.62 2.66
108 109 8.652810 ACTACACTTACGAAATGTGTAAAGTT 57.347 30.769 16.13 5.35 43.62 2.66
109 110 8.652810 AACTACACTTACGAAATGTGTAAAGT 57.347 30.769 16.13 12.67 43.62 2.66
112 113 8.977505 GGTAAACTACACTTACGAAATGTGTAA 58.022 33.333 16.13 5.50 43.62 2.41
113 114 7.325821 CGGTAAACTACACTTACGAAATGTGTA 59.674 37.037 15.22 15.22 43.53 2.90
114 115 6.144402 CGGTAAACTACACTTACGAAATGTGT 59.856 38.462 14.77 14.77 45.39 3.72
115 116 6.363088 TCGGTAAACTACACTTACGAAATGTG 59.637 38.462 0.00 0.00 37.67 3.21
116 117 6.446318 TCGGTAAACTACACTTACGAAATGT 58.554 36.000 0.00 0.00 31.26 2.71
117 118 6.932901 TCGGTAAACTACACTTACGAAATG 57.067 37.500 0.00 0.00 31.26 2.32
118 119 7.599998 ACAATCGGTAAACTACACTTACGAAAT 59.400 33.333 0.00 0.00 31.26 2.17
119 120 6.922957 ACAATCGGTAAACTACACTTACGAAA 59.077 34.615 0.00 0.00 31.26 3.46
120 121 6.363088 CACAATCGGTAAACTACACTTACGAA 59.637 38.462 0.00 0.00 31.26 3.85
121 122 5.858049 CACAATCGGTAAACTACACTTACGA 59.142 40.000 0.00 0.00 31.26 3.43
122 123 5.630680 ACACAATCGGTAAACTACACTTACG 59.369 40.000 0.00 0.00 31.26 3.18
123 124 8.693542 ATACACAATCGGTAAACTACACTTAC 57.306 34.615 0.00 0.00 0.00 2.34
124 125 8.742777 AGATACACAATCGGTAAACTACACTTA 58.257 33.333 0.00 0.00 39.79 2.24
125 126 7.544566 CAGATACACAATCGGTAAACTACACTT 59.455 37.037 0.00 0.00 39.79 3.16
126 127 7.033791 CAGATACACAATCGGTAAACTACACT 58.966 38.462 0.00 0.00 39.79 3.55
127 128 7.031372 TCAGATACACAATCGGTAAACTACAC 58.969 38.462 0.00 0.00 39.79 2.90
128 129 7.160547 TCAGATACACAATCGGTAAACTACA 57.839 36.000 0.00 0.00 39.79 2.74
129 130 7.919091 TGATCAGATACACAATCGGTAAACTAC 59.081 37.037 0.00 0.00 39.79 2.73
130 131 8.002984 TGATCAGATACACAATCGGTAAACTA 57.997 34.615 0.00 0.00 39.79 2.24
131 132 6.873997 TGATCAGATACACAATCGGTAAACT 58.126 36.000 0.00 0.00 39.79 2.66
132 133 7.715265 ATGATCAGATACACAATCGGTAAAC 57.285 36.000 0.09 0.00 39.79 2.01
133 134 8.731275 AAATGATCAGATACACAATCGGTAAA 57.269 30.769 0.09 0.00 39.79 2.01
134 135 8.611757 CAAAATGATCAGATACACAATCGGTAA 58.388 33.333 0.09 0.00 39.79 2.85
135 136 7.226523 CCAAAATGATCAGATACACAATCGGTA 59.773 37.037 0.09 0.00 39.79 4.02
136 137 6.038603 CCAAAATGATCAGATACACAATCGGT 59.961 38.462 0.09 0.00 39.79 4.69
137 138 6.038603 ACCAAAATGATCAGATACACAATCGG 59.961 38.462 0.09 0.00 39.79 4.18
138 139 7.019774 ACCAAAATGATCAGATACACAATCG 57.980 36.000 0.09 0.00 39.79 3.34
139 140 9.643693 AAAACCAAAATGATCAGATACACAATC 57.356 29.630 0.09 0.00 34.52 2.67
164 165 2.906691 TTCGTACGTGAGGGGAAAAA 57.093 45.000 16.05 0.00 0.00 1.94
165 166 4.021192 AGTTATTCGTACGTGAGGGGAAAA 60.021 41.667 16.05 0.00 0.00 2.29
166 167 3.511146 AGTTATTCGTACGTGAGGGGAAA 59.489 43.478 16.05 0.00 0.00 3.13
167 168 3.091545 AGTTATTCGTACGTGAGGGGAA 58.908 45.455 16.05 0.00 0.00 3.97
168 169 2.424601 CAGTTATTCGTACGTGAGGGGA 59.575 50.000 16.05 0.00 0.00 4.81
169 170 2.165030 ACAGTTATTCGTACGTGAGGGG 59.835 50.000 16.05 3.79 0.00 4.79
170 171 3.176708 CACAGTTATTCGTACGTGAGGG 58.823 50.000 16.05 3.17 0.00 4.30
171 172 3.829948 ACACAGTTATTCGTACGTGAGG 58.170 45.455 16.05 5.82 0.00 3.86
172 173 5.817616 AAACACAGTTATTCGTACGTGAG 57.182 39.130 16.05 6.20 0.00 3.51
173 174 9.012448 CATATAAACACAGTTATTCGTACGTGA 57.988 33.333 16.05 5.85 0.00 4.35
174 175 9.012448 TCATATAAACACAGTTATTCGTACGTG 57.988 33.333 16.05 7.46 0.00 4.49
175 176 9.013490 GTCATATAAACACAGTTATTCGTACGT 57.987 33.333 16.05 0.00 0.00 3.57
176 177 9.229784 AGTCATATAAACACAGTTATTCGTACG 57.770 33.333 9.53 9.53 0.00 3.67
180 181 9.210426 GCAAAGTCATATAAACACAGTTATTCG 57.790 33.333 0.00 0.00 0.00 3.34
190 191 9.853555 CCAACAAATAGCAAAGTCATATAAACA 57.146 29.630 0.00 0.00 0.00 2.83
191 192 9.855021 ACCAACAAATAGCAAAGTCATATAAAC 57.145 29.630 0.00 0.00 0.00 2.01
192 193 9.853555 CACCAACAAATAGCAAAGTCATATAAA 57.146 29.630 0.00 0.00 0.00 1.40
193 194 9.019656 ACACCAACAAATAGCAAAGTCATATAA 57.980 29.630 0.00 0.00 0.00 0.98
194 195 8.458052 CACACCAACAAATAGCAAAGTCATATA 58.542 33.333 0.00 0.00 0.00 0.86
195 196 7.039784 ACACACCAACAAATAGCAAAGTCATAT 60.040 33.333 0.00 0.00 0.00 1.78
196 197 6.264292 ACACACCAACAAATAGCAAAGTCATA 59.736 34.615 0.00 0.00 0.00 2.15
197 198 5.068987 ACACACCAACAAATAGCAAAGTCAT 59.931 36.000 0.00 0.00 0.00 3.06
198 199 4.400884 ACACACCAACAAATAGCAAAGTCA 59.599 37.500 0.00 0.00 0.00 3.41
199 200 4.932146 ACACACCAACAAATAGCAAAGTC 58.068 39.130 0.00 0.00 0.00 3.01
200 201 5.127031 AGAACACACCAACAAATAGCAAAGT 59.873 36.000 0.00 0.00 0.00 2.66
201 202 5.591099 AGAACACACCAACAAATAGCAAAG 58.409 37.500 0.00 0.00 0.00 2.77
202 203 5.590530 AGAACACACCAACAAATAGCAAA 57.409 34.783 0.00 0.00 0.00 3.68
203 204 5.105554 ACAAGAACACACCAACAAATAGCAA 60.106 36.000 0.00 0.00 0.00 3.91
204 205 4.400884 ACAAGAACACACCAACAAATAGCA 59.599 37.500 0.00 0.00 0.00 3.49
205 206 4.739716 CACAAGAACACACCAACAAATAGC 59.260 41.667 0.00 0.00 0.00 2.97
206 207 5.743398 CACACAAGAACACACCAACAAATAG 59.257 40.000 0.00 0.00 0.00 1.73
207 208 5.645624 CACACAAGAACACACCAACAAATA 58.354 37.500 0.00 0.00 0.00 1.40
208 209 4.493547 CACACAAGAACACACCAACAAAT 58.506 39.130 0.00 0.00 0.00 2.32
209 210 3.858877 GCACACAAGAACACACCAACAAA 60.859 43.478 0.00 0.00 0.00 2.83
210 211 2.352225 GCACACAAGAACACACCAACAA 60.352 45.455 0.00 0.00 0.00 2.83
211 212 1.201181 GCACACAAGAACACACCAACA 59.799 47.619 0.00 0.00 0.00 3.33
212 213 1.793714 CGCACACAAGAACACACCAAC 60.794 52.381 0.00 0.00 0.00 3.77
213 214 0.449786 CGCACACAAGAACACACCAA 59.550 50.000 0.00 0.00 0.00 3.67
214 215 0.675208 ACGCACACAAGAACACACCA 60.675 50.000 0.00 0.00 0.00 4.17
215 216 0.248054 CACGCACACAAGAACACACC 60.248 55.000 0.00 0.00 0.00 4.16
216 217 0.446222 ACACGCACACAAGAACACAC 59.554 50.000 0.00 0.00 0.00 3.82
217 218 0.445829 CACACGCACACAAGAACACA 59.554 50.000 0.00 0.00 0.00 3.72
218 219 0.446222 ACACACGCACACAAGAACAC 59.554 50.000 0.00 0.00 0.00 3.32
219 220 1.135831 CAACACACGCACACAAGAACA 60.136 47.619 0.00 0.00 0.00 3.18
220 221 1.534028 CAACACACGCACACAAGAAC 58.466 50.000 0.00 0.00 0.00 3.01
221 222 0.449786 CCAACACACGCACACAAGAA 59.550 50.000 0.00 0.00 0.00 2.52
222 223 0.675208 ACCAACACACGCACACAAGA 60.675 50.000 0.00 0.00 0.00 3.02
223 224 0.523125 CACCAACACACGCACACAAG 60.523 55.000 0.00 0.00 0.00 3.16
224 225 1.237954 ACACCAACACACGCACACAA 61.238 50.000 0.00 0.00 0.00 3.33
225 226 1.237954 AACACCAACACACGCACACA 61.238 50.000 0.00 0.00 0.00 3.72
226 227 0.796491 CAACACCAACACACGCACAC 60.796 55.000 0.00 0.00 0.00 3.82
227 228 1.503994 CAACACCAACACACGCACA 59.496 52.632 0.00 0.00 0.00 4.57
228 229 1.226547 CCAACACCAACACACGCAC 60.227 57.895 0.00 0.00 0.00 5.34
229 230 1.244697 AACCAACACCAACACACGCA 61.245 50.000 0.00 0.00 0.00 5.24
230 231 0.800300 CAACCAACACCAACACACGC 60.800 55.000 0.00 0.00 0.00 5.34
231 232 0.179150 CCAACCAACACCAACACACG 60.179 55.000 0.00 0.00 0.00 4.49
232 233 0.174617 CCCAACCAACACCAACACAC 59.825 55.000 0.00 0.00 0.00 3.82
233 234 0.251832 ACCCAACCAACACCAACACA 60.252 50.000 0.00 0.00 0.00 3.72
234 235 0.174617 CACCCAACCAACACCAACAC 59.825 55.000 0.00 0.00 0.00 3.32
235 236 1.608717 GCACCCAACCAACACCAACA 61.609 55.000 0.00 0.00 0.00 3.33
236 237 1.142965 GCACCCAACCAACACCAAC 59.857 57.895 0.00 0.00 0.00 3.77
237 238 0.689080 ATGCACCCAACCAACACCAA 60.689 50.000 0.00 0.00 0.00 3.67
238 239 1.075674 ATGCACCCAACCAACACCA 60.076 52.632 0.00 0.00 0.00 4.17
239 240 1.665442 GATGCACCCAACCAACACC 59.335 57.895 0.00 0.00 0.00 4.16
240 241 1.169661 TCGATGCACCCAACCAACAC 61.170 55.000 0.00 0.00 0.00 3.32
241 242 0.251121 ATCGATGCACCCAACCAACA 60.251 50.000 0.00 0.00 0.00 3.33
242 243 0.171007 CATCGATGCACCCAACCAAC 59.829 55.000 13.37 0.00 0.00 3.77
243 244 0.251121 ACATCGATGCACCCAACCAA 60.251 50.000 25.11 0.00 0.00 3.67
244 245 0.615850 TACATCGATGCACCCAACCA 59.384 50.000 25.11 0.00 0.00 3.67
245 246 1.603802 CATACATCGATGCACCCAACC 59.396 52.381 25.11 0.00 0.00 3.77
246 247 2.288666 ACATACATCGATGCACCCAAC 58.711 47.619 25.11 0.00 0.00 3.77
247 248 2.708216 ACATACATCGATGCACCCAA 57.292 45.000 25.11 4.63 0.00 4.12
248 249 4.064388 CAATACATACATCGATGCACCCA 58.936 43.478 25.11 8.56 0.00 4.51
249 250 4.065088 ACAATACATACATCGATGCACCC 58.935 43.478 25.11 0.00 0.00 4.61
250 251 4.511454 ACACAATACATACATCGATGCACC 59.489 41.667 25.11 0.00 0.00 5.01
251 252 5.657470 ACACAATACATACATCGATGCAC 57.343 39.130 25.11 0.00 0.00 4.57
252 253 5.007528 CCAACACAATACATACATCGATGCA 59.992 40.000 25.11 13.56 0.00 3.96
253 254 5.007626 ACCAACACAATACATACATCGATGC 59.992 40.000 25.11 0.00 0.00 3.91
254 255 6.603237 ACCAACACAATACATACATCGATG 57.397 37.500 23.68 23.68 0.00 3.84
255 256 8.902540 AATACCAACACAATACATACATCGAT 57.097 30.769 0.00 0.00 0.00 3.59
256 257 8.201464 AGAATACCAACACAATACATACATCGA 58.799 33.333 0.00 0.00 0.00 3.59
257 258 8.365399 AGAATACCAACACAATACATACATCG 57.635 34.615 0.00 0.00 0.00 3.84
275 276 9.971922 CCCAAGATGAAATATCAAAAGAATACC 57.028 33.333 0.00 0.00 39.49 2.73
278 279 9.258629 TGTCCCAAGATGAAATATCAAAAGAAT 57.741 29.630 0.00 0.00 39.49 2.40
279 280 8.648698 TGTCCCAAGATGAAATATCAAAAGAA 57.351 30.769 0.00 0.00 39.49 2.52
280 281 8.648698 TTGTCCCAAGATGAAATATCAAAAGA 57.351 30.769 0.00 0.00 39.49 2.52
290 291 9.874205 GATGAATTTTATTGTCCCAAGATGAAA 57.126 29.630 0.00 0.00 0.00 2.69
291 292 9.033711 TGATGAATTTTATTGTCCCAAGATGAA 57.966 29.630 0.00 0.00 0.00 2.57
292 293 8.592529 TGATGAATTTTATTGTCCCAAGATGA 57.407 30.769 0.00 0.00 0.00 2.92
293 294 9.309516 CTTGATGAATTTTATTGTCCCAAGATG 57.690 33.333 0.00 0.00 31.69 2.90
294 295 9.258629 TCTTGATGAATTTTATTGTCCCAAGAT 57.741 29.630 0.00 0.00 33.62 2.40
295 296 8.648698 TCTTGATGAATTTTATTGTCCCAAGA 57.351 30.769 0.00 0.00 35.41 3.02
296 297 9.362539 CTTCTTGATGAATTTTATTGTCCCAAG 57.637 33.333 0.00 0.00 33.71 3.61
297 298 9.087871 TCTTCTTGATGAATTTTATTGTCCCAA 57.912 29.630 0.00 0.00 33.71 4.12
298 299 8.522830 GTCTTCTTGATGAATTTTATTGTCCCA 58.477 33.333 0.00 0.00 33.71 4.37
299 300 8.522830 TGTCTTCTTGATGAATTTTATTGTCCC 58.477 33.333 0.00 0.00 33.71 4.46
300 301 9.912634 TTGTCTTCTTGATGAATTTTATTGTCC 57.087 29.630 0.00 0.00 33.71 4.02
307 308 9.874205 TTCAAGTTTGTCTTCTTGATGAATTTT 57.126 25.926 8.13 0.00 45.77 1.82
308 309 9.305925 GTTCAAGTTTGTCTTCTTGATGAATTT 57.694 29.630 8.13 0.00 45.77 1.82
309 310 8.689972 AGTTCAAGTTTGTCTTCTTGATGAATT 58.310 29.630 8.13 0.00 45.77 2.17
310 311 8.230472 AGTTCAAGTTTGTCTTCTTGATGAAT 57.770 30.769 8.13 0.00 45.77 2.57
311 312 7.554118 AGAGTTCAAGTTTGTCTTCTTGATGAA 59.446 33.333 8.13 0.00 45.77 2.57
312 313 7.050377 AGAGTTCAAGTTTGTCTTCTTGATGA 58.950 34.615 8.13 0.00 45.77 2.92
313 314 7.256756 AGAGTTCAAGTTTGTCTTCTTGATG 57.743 36.000 8.13 0.00 45.77 3.07
314 315 7.554118 TGAAGAGTTCAAGTTTGTCTTCTTGAT 59.446 33.333 17.36 0.00 45.77 2.57
315 316 6.878923 TGAAGAGTTCAAGTTTGTCTTCTTGA 59.121 34.615 17.36 3.91 45.15 3.02
316 317 7.076842 TGAAGAGTTCAAGTTTGTCTTCTTG 57.923 36.000 17.36 0.00 42.38 3.02
317 318 7.687941 TTGAAGAGTTCAAGTTTGTCTTCTT 57.312 32.000 17.36 12.38 44.21 2.52
408 409 1.893062 GCTTCCAGCCCATTTGTCC 59.107 57.895 0.00 0.00 34.48 4.02
495 496 1.524008 CTGGTTGGGCGTTTTCCCTC 61.524 60.000 0.12 0.00 46.67 4.30
523 530 1.153997 GGAGACTGAAGCGGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
1097 1118 4.821589 GAGAACAGGAGGCGGCGG 62.822 72.222 9.78 0.00 0.00 6.13
1119 1371 2.452491 AGGGCCTTGGACTTGGGT 60.452 61.111 0.00 0.00 0.00 4.51
1192 1444 3.062466 CGCACCTGACGGAGGAGA 61.062 66.667 9.60 0.00 46.33 3.71
1225 1477 0.679505 CTGGACAGACGGAAGGAACA 59.320 55.000 0.00 0.00 0.00 3.18
1226 1478 0.966920 TCTGGACAGACGGAAGGAAC 59.033 55.000 0.00 0.00 31.41 3.62
1227 1479 1.938585 ATCTGGACAGACGGAAGGAA 58.061 50.000 3.82 0.00 40.75 3.36
1228 1480 1.938585 AATCTGGACAGACGGAAGGA 58.061 50.000 3.82 0.00 40.75 3.36
1229 1481 2.770164 AAATCTGGACAGACGGAAGG 57.230 50.000 3.82 0.00 40.75 3.46
1230 1482 5.073311 TCTAAAATCTGGACAGACGGAAG 57.927 43.478 3.82 1.42 40.75 3.46
1231 1483 5.677319 ATCTAAAATCTGGACAGACGGAA 57.323 39.130 3.82 0.00 40.75 4.30
1232 1484 5.677319 AATCTAAAATCTGGACAGACGGA 57.323 39.130 3.82 0.12 40.75 4.69
1233 1485 5.065218 CCAAATCTAAAATCTGGACAGACGG 59.935 44.000 3.82 0.00 40.75 4.79
1234 1486 5.065218 CCCAAATCTAAAATCTGGACAGACG 59.935 44.000 3.82 0.00 40.75 4.18
1235 1487 5.358160 CCCCAAATCTAAAATCTGGACAGAC 59.642 44.000 3.82 0.00 40.75 3.51
1236 1488 5.509498 CCCCAAATCTAAAATCTGGACAGA 58.491 41.667 4.26 4.26 42.37 3.41
1237 1489 4.098501 GCCCCAAATCTAAAATCTGGACAG 59.901 45.833 0.00 0.00 0.00 3.51
1583 1845 0.621280 TGTCCATGAGATCAGGCCCA 60.621 55.000 0.00 0.00 0.00 5.36
1613 1875 5.694995 ACCAATTCAATACAGATAGTGGGG 58.305 41.667 0.00 0.00 0.00 4.96
1619 1881 9.221933 ACAACGTTTACCAATTCAATACAGATA 57.778 29.630 0.00 0.00 0.00 1.98
1633 1895 3.851976 AAGCAAACACAACGTTTACCA 57.148 38.095 0.00 0.00 46.27 3.25
1652 1914 5.245301 CACGACCCCAGGATGATATAAGTAA 59.755 44.000 0.00 0.00 39.69 2.24
1804 2067 1.810031 CGCACCAAGAGGAAGAACACA 60.810 52.381 0.00 0.00 38.69 3.72
1805 2068 0.868406 CGCACCAAGAGGAAGAACAC 59.132 55.000 0.00 0.00 38.69 3.32
1806 2069 0.884704 GCGCACCAAGAGGAAGAACA 60.885 55.000 0.30 0.00 38.69 3.18
1867 2136 5.976534 TCACAAAATTCACATGCAACACTAC 59.023 36.000 0.00 0.00 0.00 2.73
1948 2222 6.017934 CACTAGCTCTGCTTTGTTACTTTTCA 60.018 38.462 0.00 0.00 40.44 2.69
1974 2248 9.372369 AGCTCACATTATTTACTCTACACTTTC 57.628 33.333 0.00 0.00 0.00 2.62
1985 2259 6.595716 ACTGGTTCAGAGCTCACATTATTTAC 59.404 38.462 17.77 0.68 35.18 2.01
1986 2260 6.595326 CACTGGTTCAGAGCTCACATTATTTA 59.405 38.462 17.77 0.00 35.18 1.40
1988 2262 4.940046 CACTGGTTCAGAGCTCACATTATT 59.060 41.667 17.77 0.00 35.18 1.40
1995 2269 0.034476 CTGCACTGGTTCAGAGCTCA 59.966 55.000 17.77 0.00 45.60 4.26
2066 2340 7.332926 CAGCACAACTAAGAGTCAAGTCATAAT 59.667 37.037 0.00 0.00 0.00 1.28
2366 2640 0.674534 CCTCGGTAGCTGTATCACCC 59.325 60.000 0.00 0.00 0.00 4.61
2390 2664 8.140628 TGGCACGCATATTTTGTCAAATATATT 58.859 29.630 0.00 0.00 41.72 1.28
2438 2712 1.557099 TGGATGCTCGTAGTTGGTCT 58.443 50.000 0.00 0.00 0.00 3.85
2564 2838 0.394216 TCTTGGCAATCCATGGACCG 60.394 55.000 18.99 12.39 43.05 4.79
2565 2839 2.077687 ATCTTGGCAATCCATGGACC 57.922 50.000 18.99 14.92 43.05 4.46
2623 2897 8.539674 GCATTCCTTTTACAGTTGTTTAAGTTG 58.460 33.333 0.00 0.00 0.00 3.16
2625 2899 7.704899 GTGCATTCCTTTTACAGTTGTTTAAGT 59.295 33.333 0.00 0.00 0.00 2.24
2651 2925 8.839310 ATAGATGAGAGGTGGAAAAATAATCG 57.161 34.615 0.00 0.00 0.00 3.34
2689 2963 5.277683 CCATCATCGAATGGTGAATGAGTTC 60.278 44.000 7.82 0.00 44.13 3.01
2743 3017 7.362229 CCGCTATAACCAACATTTTAAAGTGGA 60.362 37.037 14.38 0.00 33.72 4.02
2764 3038 1.448985 GAAGACCAATTGTGCCGCTA 58.551 50.000 4.43 0.00 0.00 4.26
2766 3040 1.154225 CGAAGACCAATTGTGCCGC 60.154 57.895 4.43 0.00 0.00 6.53
2812 3142 5.127682 GGACCTCTGGCAATATTGTGATTTT 59.872 40.000 16.61 0.00 0.00 1.82
2826 3156 1.067821 CGAGTTCTATGGACCTCTGGC 59.932 57.143 2.25 0.00 30.19 4.85
3081 3412 4.045104 CGATTCTCCTCAACTGAATACCG 58.955 47.826 0.00 0.00 31.49 4.02
3231 3562 4.741676 CCATCAACTGAAGTTTTTGCTGTC 59.258 41.667 0.00 0.00 35.83 3.51
3298 3629 8.295288 ACAATCATGAAGAAGTTTCAGACATTC 58.705 33.333 0.00 0.00 0.00 2.67
3315 3646 4.314961 AGCGTCACACTTTACAATCATGA 58.685 39.130 0.00 0.00 0.00 3.07
3333 3664 2.919228 AGTCCTTGTTTCTTCAAGCGT 58.081 42.857 0.00 0.00 42.16 5.07
3362 3693 1.334556 GACAGCACACATGAACTGCAA 59.665 47.619 0.00 0.00 33.35 4.08
3380 3711 2.028385 AGGATTAACGTGGTGAGGTGAC 60.028 50.000 0.00 0.00 0.00 3.67
3397 3728 1.764723 TGTGCTAGCATGCTACAGGAT 59.235 47.619 23.52 0.41 0.00 3.24
3399 3730 2.141517 GATGTGCTAGCATGCTACAGG 58.858 52.381 23.52 14.94 31.52 4.00
3400 3731 2.830104 TGATGTGCTAGCATGCTACAG 58.170 47.619 23.52 17.57 31.52 2.74
3422 3754 1.202330 AGAGGCAGGGTCATCAAGAG 58.798 55.000 0.00 0.00 0.00 2.85
3477 3809 7.770897 ACAAGTCTTCTGTCTTAGACAACAAAT 59.229 33.333 16.28 0.00 42.26 2.32
3484 3816 5.243283 TGGGTACAAGTCTTCTGTCTTAGAC 59.757 44.000 5.27 5.27 40.82 2.59
3494 3826 4.537135 TGATGAGTGGGTACAAGTCTTC 57.463 45.455 0.00 3.80 0.00 2.87
3556 3888 9.295825 TCATGATAACGGGCTGAAATAATAAAT 57.704 29.630 0.00 0.00 0.00 1.40
3585 3917 6.811170 GGTGAAGATGTGTGAAAACAGAAAAA 59.189 34.615 0.00 0.00 32.52 1.94
3590 3922 4.790766 GCAGGTGAAGATGTGTGAAAACAG 60.791 45.833 0.00 0.00 32.52 3.16
3593 3925 3.286353 TGCAGGTGAAGATGTGTGAAAA 58.714 40.909 0.00 0.00 0.00 2.29
3756 4118 0.179132 TGCACATGGATCAATTGCGC 60.179 50.000 0.00 0.00 35.90 6.09
3794 4157 4.578871 TCATTGAGACAATGACGACCAAT 58.421 39.130 18.95 0.00 32.21 3.16
3819 4182 8.007742 AGTGATATTCATAGGGTAAGAGACAGT 58.992 37.037 0.00 0.00 0.00 3.55
3851 4214 3.966979 ACTGCAACACCCATGATAATGA 58.033 40.909 0.00 0.00 0.00 2.57
3854 4217 6.210385 ACAAATTACTGCAACACCCATGATAA 59.790 34.615 0.00 0.00 0.00 1.75
3940 4311 8.841444 ATACACGAAAGAATAATCAAATGTGC 57.159 30.769 0.00 0.00 0.00 4.57
4040 4411 3.882888 TCCACTCACAAGGTCACAAATTC 59.117 43.478 0.00 0.00 0.00 2.17
4044 4415 4.698201 TTATCCACTCACAAGGTCACAA 57.302 40.909 0.00 0.00 0.00 3.33
4051 4422 4.154918 GCTCAGGTTTTATCCACTCACAAG 59.845 45.833 0.00 0.00 0.00 3.16
4056 4427 5.346181 AGTAGCTCAGGTTTTATCCACTC 57.654 43.478 0.00 0.00 0.00 3.51
4298 4774 5.357257 ACGTTTATATGAGGCACACTAAGG 58.643 41.667 0.00 0.00 0.00 2.69
4300 4776 7.490079 CACTTACGTTTATATGAGGCACACTAA 59.510 37.037 0.00 0.00 0.00 2.24
4321 4797 8.298854 CAGGATCAAATTTGACATGAACACTTA 58.701 33.333 22.71 0.00 40.49 2.24
4538 5014 9.511144 CAAATTTTAACTAAAACCAAGACGAGT 57.489 29.630 0.00 0.00 37.92 4.18
4539 5015 9.724839 TCAAATTTTAACTAAAACCAAGACGAG 57.275 29.630 0.00 0.00 37.92 4.18
4557 5033 8.606602 ACTCGTCGTAGTTTTAGTTCAAATTTT 58.393 29.630 0.00 0.00 0.00 1.82
4558 5034 8.134905 ACTCGTCGTAGTTTTAGTTCAAATTT 57.865 30.769 0.00 0.00 0.00 1.82
4559 5035 7.704789 ACTCGTCGTAGTTTTAGTTCAAATT 57.295 32.000 0.00 0.00 0.00 1.82
4560 5036 8.801715 TTACTCGTCGTAGTTTTAGTTCAAAT 57.198 30.769 3.29 0.00 0.00 2.32
4561 5037 8.627487 TTTACTCGTCGTAGTTTTAGTTCAAA 57.373 30.769 3.29 0.00 0.00 2.69
4562 5038 8.801715 ATTTACTCGTCGTAGTTTTAGTTCAA 57.198 30.769 3.29 0.00 0.00 2.69
4563 5039 9.546909 CTATTTACTCGTCGTAGTTTTAGTTCA 57.453 33.333 3.29 0.00 0.00 3.18
4564 5040 9.004146 CCTATTTACTCGTCGTAGTTTTAGTTC 57.996 37.037 3.29 0.00 0.00 3.01
4565 5041 8.730680 TCCTATTTACTCGTCGTAGTTTTAGTT 58.269 33.333 3.29 0.00 0.00 2.24
4566 5042 8.268850 TCCTATTTACTCGTCGTAGTTTTAGT 57.731 34.615 3.29 0.00 0.00 2.24
4567 5043 9.004146 GTTCCTATTTACTCGTCGTAGTTTTAG 57.996 37.037 3.29 3.65 0.00 1.85
4568 5044 7.692291 CGTTCCTATTTACTCGTCGTAGTTTTA 59.308 37.037 3.29 0.00 0.00 1.52
4569 5045 6.524586 CGTTCCTATTTACTCGTCGTAGTTTT 59.475 38.462 3.29 0.00 0.00 2.43
4570 5046 6.024049 CGTTCCTATTTACTCGTCGTAGTTT 58.976 40.000 3.29 0.00 0.00 2.66
4571 5047 5.447818 CCGTTCCTATTTACTCGTCGTAGTT 60.448 44.000 3.29 0.00 0.00 2.24
4572 5048 4.034510 CCGTTCCTATTTACTCGTCGTAGT 59.965 45.833 0.00 0.00 0.00 2.73
4573 5049 4.271049 TCCGTTCCTATTTACTCGTCGTAG 59.729 45.833 0.00 0.00 0.00 3.51
4574 5050 4.188462 TCCGTTCCTATTTACTCGTCGTA 58.812 43.478 0.00 0.00 0.00 3.43
4575 5051 3.009723 TCCGTTCCTATTTACTCGTCGT 58.990 45.455 0.00 0.00 0.00 4.34
4576 5052 3.547613 CCTCCGTTCCTATTTACTCGTCG 60.548 52.174 0.00 0.00 0.00 5.12
4577 5053 3.243334 CCCTCCGTTCCTATTTACTCGTC 60.243 52.174 0.00 0.00 0.00 4.20
4578 5054 2.692041 CCCTCCGTTCCTATTTACTCGT 59.308 50.000 0.00 0.00 0.00 4.18
4579 5055 2.954318 TCCCTCCGTTCCTATTTACTCG 59.046 50.000 0.00 0.00 0.00 4.18
4580 5056 3.959449 ACTCCCTCCGTTCCTATTTACTC 59.041 47.826 0.00 0.00 0.00 2.59
4581 5057 3.991683 ACTCCCTCCGTTCCTATTTACT 58.008 45.455 0.00 0.00 0.00 2.24
4582 5058 4.892345 AGTACTCCCTCCGTTCCTATTTAC 59.108 45.833 0.00 0.00 0.00 2.01
4583 5059 5.134725 AGTACTCCCTCCGTTCCTATTTA 57.865 43.478 0.00 0.00 0.00 1.40
4584 5060 3.991683 AGTACTCCCTCCGTTCCTATTT 58.008 45.455 0.00 0.00 0.00 1.40
4585 5061 3.684408 AGTACTCCCTCCGTTCCTATT 57.316 47.619 0.00 0.00 0.00 1.73
4586 5062 3.684408 AAGTACTCCCTCCGTTCCTAT 57.316 47.619 0.00 0.00 0.00 2.57
4587 5063 4.591321 TTAAGTACTCCCTCCGTTCCTA 57.409 45.455 0.00 0.00 0.00 2.94
4588 5064 3.463048 TTAAGTACTCCCTCCGTTCCT 57.537 47.619 0.00 0.00 0.00 3.36
4589 5065 4.750021 ATTTAAGTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
4590 5066 8.728337 ATTTTATTTAAGTACTCCCTCCGTTC 57.272 34.615 0.00 0.00 0.00 3.95
4592 5068 9.605275 GTAATTTTATTTAAGTACTCCCTCCGT 57.395 33.333 0.00 0.00 0.00 4.69
4593 5069 9.828039 AGTAATTTTATTTAAGTACTCCCTCCG 57.172 33.333 0.00 0.00 34.81 4.63
4614 5090 9.167311 CTAGATTTAAGGTTGCTGACAAGTAAT 57.833 33.333 0.00 0.00 36.16 1.89
4711 5190 2.940410 GTTCAGTCGTCAAAGGAAACCA 59.060 45.455 0.00 0.00 0.00 3.67
4712 5191 2.940410 TGTTCAGTCGTCAAAGGAAACC 59.060 45.455 0.00 0.00 0.00 3.27
4731 5210 0.541392 TGGCTTGTCGCTATGGATGT 59.459 50.000 0.00 0.00 39.13 3.06
4797 5276 4.624336 TCTAGAACAGACGATTGAGCTC 57.376 45.455 6.82 6.82 0.00 4.09
4867 5346 7.270779 TCAATTCATTTGGTGTGTTTCAATCA 58.729 30.769 0.00 0.00 35.92 2.57
4895 5374 2.747989 CAGACATCATGAGCATATGCCC 59.252 50.000 23.96 13.61 43.38 5.36
4910 5389 1.404986 GCCACAATGCAATGCAGACAT 60.405 47.619 14.98 0.00 43.65 3.06
4941 5420 4.471904 TGCAGTTCTTATCGACTTCCAT 57.528 40.909 0.00 0.00 0.00 3.41
5019 5498 0.405198 ATGCATGTGTGGAGGGTCAA 59.595 50.000 0.00 0.00 0.00 3.18
5090 5569 5.488341 ACTCCAATGTAATGTGTGGACTAC 58.512 41.667 0.00 0.00 35.22 2.73
5091 5570 5.755409 ACTCCAATGTAATGTGTGGACTA 57.245 39.130 0.00 0.00 35.22 2.59
5092 5571 4.640771 ACTCCAATGTAATGTGTGGACT 57.359 40.909 0.00 0.00 35.22 3.85
5093 5572 8.677148 AATATACTCCAATGTAATGTGTGGAC 57.323 34.615 0.00 0.00 35.22 4.02
5094 5573 9.693739 AAAATATACTCCAATGTAATGTGTGGA 57.306 29.630 0.00 0.00 37.83 4.02
5103 5582 9.127277 GCCCTAACAAAAATATACTCCAATGTA 57.873 33.333 0.00 0.00 0.00 2.29
5104 5583 7.069455 GGCCCTAACAAAAATATACTCCAATGT 59.931 37.037 0.00 0.00 0.00 2.71
5105 5584 7.433680 GGCCCTAACAAAAATATACTCCAATG 58.566 38.462 0.00 0.00 0.00 2.82
5106 5585 6.553476 GGGCCCTAACAAAAATATACTCCAAT 59.447 38.462 17.04 0.00 0.00 3.16
5107 5586 5.894964 GGGCCCTAACAAAAATATACTCCAA 59.105 40.000 17.04 0.00 0.00 3.53
5108 5587 5.194942 AGGGCCCTAACAAAAATATACTCCA 59.805 40.000 27.42 0.00 0.00 3.86
5109 5588 5.702266 AGGGCCCTAACAAAAATATACTCC 58.298 41.667 27.42 0.00 0.00 3.85
5110 5589 6.940867 CCTAGGGCCCTAACAAAAATATACTC 59.059 42.308 31.41 0.00 0.00 2.59
5111 5590 6.391947 ACCTAGGGCCCTAACAAAAATATACT 59.608 38.462 31.41 3.43 0.00 2.12
5229 7657 2.675844 CCATGCATTGTCAAATTGCTGG 59.324 45.455 11.43 11.60 0.00 4.85
5237 7665 5.047235 TCAAATCACATCCATGCATTGTCAA 60.047 36.000 0.00 0.00 0.00 3.18
5353 7781 9.227777 GTGGTAAATTCATAGTTCTTACAAGGT 57.772 33.333 0.00 0.00 0.00 3.50
5396 7824 2.656002 AGTCGAGCAGCTACCAGATTA 58.344 47.619 0.00 0.00 0.00 1.75
5403 7831 2.464865 CAATGGTAGTCGAGCAGCTAC 58.535 52.381 0.00 3.03 39.39 3.58
5407 7835 0.537188 ACCCAATGGTAGTCGAGCAG 59.463 55.000 0.00 0.00 45.45 4.24
5414 7842 2.045340 GCCGCACCCAATGGTAGT 60.045 61.111 0.00 0.00 45.57 2.73
5415 7843 2.045438 TGCCGCACCCAATGGTAG 60.045 61.111 0.00 0.00 45.57 3.18
5429 7857 0.249031 GGTGTTGCAGTTGAAGTGCC 60.249 55.000 21.09 8.24 43.71 5.01
5435 7863 2.114638 GCAAGGGTGTTGCAGTTGA 58.885 52.632 4.87 0.00 44.34 3.18
5482 7958 5.025826 CGTTTTAGTGTGTTTGTTCAGTCC 58.974 41.667 0.00 0.00 0.00 3.85
5621 8103 8.924691 TCATTATCAGCAAGCAACAAAAATAAC 58.075 29.630 0.00 0.00 0.00 1.89
5640 8134 8.908786 TTTCACAAGGATGAGGTATCATTATC 57.091 34.615 0.00 0.00 46.39 1.75
5696 8190 7.059033 ATTTCAACAAAATGAACGTATTCGTCG 59.941 33.333 0.00 0.00 41.57 5.12
5783 8277 8.477984 TCATTTCTTTGTTTTTGAAGAACTGG 57.522 30.769 12.90 2.34 40.49 4.00
5792 8286 7.641020 GCAAACCTGATCATTTCTTTGTTTTTG 59.359 33.333 0.00 0.00 0.00 2.44
5871 8365 5.451354 ACCCAATGTTTAGGTAAGTTGTGT 58.549 37.500 0.00 0.00 30.13 3.72
6010 8504 2.890945 GGTGGTCACTGCTTAATTTGGT 59.109 45.455 0.93 0.00 0.00 3.67
6098 8592 4.862641 ACTTAAGCCTGTGGTTGGATAT 57.137 40.909 1.29 0.00 33.46 1.63
6099 8593 4.042311 TCAACTTAAGCCTGTGGTTGGATA 59.958 41.667 1.29 0.00 38.13 2.59
6130 8624 4.314522 TTTGGCCTCATTTACAGGATGA 57.685 40.909 3.32 0.00 39.69 2.92
6162 8656 0.994263 GTACGTACAACATGCCCGTC 59.006 55.000 20.67 0.00 31.20 4.79
6165 8659 1.798283 TGTGTACGTACAACATGCCC 58.202 50.000 28.89 15.38 38.04 5.36
6211 8705 4.400251 GGCATTCATGAAAGAAGATGGACA 59.600 41.667 13.09 0.00 0.00 4.02
6212 8706 4.400251 TGGCATTCATGAAAGAAGATGGAC 59.600 41.667 13.09 0.00 0.00 4.02
6213 8707 4.602107 TGGCATTCATGAAAGAAGATGGA 58.398 39.130 13.09 0.00 0.00 3.41
6214 8708 4.994907 TGGCATTCATGAAAGAAGATGG 57.005 40.909 13.09 0.00 0.00 3.51
6239 8734 5.872617 CCAACTGTCCTATTTAACATCGTCA 59.127 40.000 0.00 0.00 0.00 4.35
6295 8947 7.015292 ACACTACCCATATGTCACGATTAAGAT 59.985 37.037 1.24 0.00 0.00 2.40
6317 8969 2.713863 TGTTAACCCGGAACAACACT 57.286 45.000 0.73 0.00 33.93 3.55
6319 8971 2.099427 GCTTTGTTAACCCGGAACAACA 59.901 45.455 16.97 13.26 44.33 3.33
6381 9033 0.680280 CTGCAAGCTGCCCAAGAGAT 60.680 55.000 0.00 0.00 44.23 2.75
6404 9056 5.163195 ACCATATAAAGTAGGCAAGACAGGG 60.163 44.000 0.00 0.00 0.00 4.45
6407 9059 6.070481 TGACACCATATAAAGTAGGCAAGACA 60.070 38.462 0.00 0.00 0.00 3.41
6457 9109 4.952335 AGTCCTGCATTTCCAAGATTAAGG 59.048 41.667 0.00 0.00 0.00 2.69
6644 9297 0.622136 TTGCACCAGGCTCATCTGAT 59.378 50.000 0.00 0.00 45.15 2.90
6663 9316 5.010282 GGTTAATTTCCTATGGCATCGGAT 58.990 41.667 20.13 9.31 0.00 4.18
6761 9414 5.108187 AGAGGTATGCACATTGTTGAGAT 57.892 39.130 0.00 0.00 0.00 2.75
6847 9510 1.075542 TGAAACGGCTGTCAATAGCG 58.924 50.000 0.00 0.00 44.60 4.26
6857 9520 4.130118 GGATGAATAGACATGAAACGGCT 58.870 43.478 0.00 0.00 0.00 5.52
6859 9522 7.148356 CCATATGGATGAATAGACATGAAACGG 60.148 40.741 17.49 0.00 37.39 4.44
6874 9537 3.311990 ACAGAGAGCACCATATGGATGA 58.688 45.455 28.77 0.00 38.94 2.92
6876 9539 3.585360 AGACAGAGAGCACCATATGGAT 58.415 45.455 28.77 13.22 38.94 3.41
6881 9544 2.501723 GGGAAAGACAGAGAGCACCATA 59.498 50.000 0.00 0.00 0.00 2.74
6889 9552 1.201429 GGGCAGGGGAAAGACAGAGA 61.201 60.000 0.00 0.00 0.00 3.10
6901 9564 2.530406 GGATAGGAGGGGGCAGGG 60.530 72.222 0.00 0.00 0.00 4.45
6910 9573 3.784429 CCTGAGGAGGGGATAGGAG 57.216 63.158 0.00 0.00 35.40 3.69
7045 9716 2.516923 CGTGTTTGTGCCGTGTTTAAA 58.483 42.857 0.00 0.00 0.00 1.52
7057 9728 2.949451 TGAATTTGCACCGTGTTTGT 57.051 40.000 0.00 0.00 0.00 2.83
7062 9733 2.917701 TGCTATGAATTTGCACCGTG 57.082 45.000 0.00 0.00 0.00 4.94
7066 9737 5.724769 GCCGAAATTTGCTATGAATTTGCAC 60.725 40.000 0.00 0.00 36.96 4.57
7067 9738 4.329528 GCCGAAATTTGCTATGAATTTGCA 59.670 37.500 0.00 0.00 36.96 4.08
7068 9739 4.548726 CGCCGAAATTTGCTATGAATTTGC 60.549 41.667 0.00 0.00 36.96 3.68
7075 9746 3.354397 GAACTCGCCGAAATTTGCTATG 58.646 45.455 0.00 0.00 0.00 2.23
7077 9748 1.392168 CGAACTCGCCGAAATTTGCTA 59.608 47.619 0.00 0.00 0.00 3.49
7078 9749 0.165944 CGAACTCGCCGAAATTTGCT 59.834 50.000 0.00 0.00 0.00 3.91
7085 9756 0.578211 GTTTGAACGAACTCGCCGAA 59.422 50.000 0.00 0.00 44.43 4.30
7512 10220 2.970639 CCTCGTCGAGCCCAAGAA 59.029 61.111 17.02 0.00 0.00 2.52
7513 10221 3.760035 GCCTCGTCGAGCCCAAGA 61.760 66.667 17.02 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.