Multiple sequence alignment - TraesCS2B01G153700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G153700 chr2B 100.000 4915 0 0 1 4915 121671136 121666222 0.000000e+00 9077.0
1 TraesCS2B01G153700 chr2B 91.667 108 6 2 35 139 719528561 719528668 3.960000e-31 147.0
2 TraesCS2B01G153700 chr2B 86.508 126 11 5 25 145 743697967 743698091 3.090000e-27 134.0
3 TraesCS2B01G153700 chr2D 96.942 2387 50 14 1623 4008 78530130 78527766 0.000000e+00 3982.0
4 TraesCS2B01G153700 chr2D 97.871 1456 14 3 1 1440 78531565 78530111 0.000000e+00 2501.0
5 TraesCS2B01G153700 chr2D 87.022 601 37 5 4019 4581 78527648 78527051 1.490000e-179 640.0
6 TraesCS2B01G153700 chr2D 87.129 303 32 4 4581 4881 531360960 531360663 2.190000e-88 337.0
7 TraesCS2B01G153700 chr2D 94.318 88 5 0 1661 1748 61023794 61023707 8.580000e-28 135.0
8 TraesCS2B01G153700 chr2D 93.103 87 6 0 1660 1746 107402868 107402954 1.440000e-25 128.0
9 TraesCS2B01G153700 chr2A 96.064 2388 73 12 1623 4008 78811576 78809208 0.000000e+00 3869.0
10 TraesCS2B01G153700 chr2A 96.987 1029 15 9 1 1015 78840706 78839680 0.000000e+00 1714.0
11 TraesCS2B01G153700 chr2A 98.372 430 7 0 1011 1440 78811986 78811557 0.000000e+00 756.0
12 TraesCS2B01G153700 chr2A 89.845 581 40 2 4013 4574 78809082 78808502 0.000000e+00 728.0
13 TraesCS2B01G153700 chr2A 88.000 275 29 4 4572 4844 604843486 604843758 6.140000e-84 322.0
14 TraesCS2B01G153700 chr2A 84.164 341 39 13 4582 4914 747330977 747331310 2.860000e-82 316.0
15 TraesCS2B01G153700 chr7D 88.988 336 29 6 4582 4915 587896703 587896374 4.580000e-110 409.0
16 TraesCS2B01G153700 chr7D 93.204 103 3 3 36 135 190163217 190163116 1.100000e-31 148.0
17 TraesCS2B01G153700 chr7D 92.135 89 7 0 1660 1748 242790577 242790665 5.160000e-25 126.0
18 TraesCS2B01G153700 chr5D 87.931 348 31 7 4570 4914 454011182 454011521 2.760000e-107 399.0
19 TraesCS2B01G153700 chr5D 90.749 227 20 1 4582 4808 2108363 2108138 8.000000e-78 302.0
20 TraesCS2B01G153700 chr5D 90.351 114 6 3 33 143 415615118 415615007 1.430000e-30 145.0
21 TraesCS2B01G153700 chr4B 88.131 337 33 7 4582 4915 630482246 630482578 1.280000e-105 394.0
22 TraesCS2B01G153700 chr4B 84.615 338 40 7 4576 4913 66849459 66849784 4.740000e-85 326.0
23 TraesCS2B01G153700 chr4B 95.610 205 5 4 1427 1630 291854246 291854447 4.740000e-85 326.0
24 TraesCS2B01G153700 chr4B 95.918 196 6 2 1428 1622 181847947 181848141 2.860000e-82 316.0
25 TraesCS2B01G153700 chr4B 84.024 338 42 7 4576 4913 66882782 66883107 1.030000e-81 315.0
26 TraesCS2B01G153700 chr4B 89.069 247 25 2 4580 4826 67034715 67034471 6.180000e-79 305.0
27 TraesCS2B01G153700 chr4B 86.640 247 30 3 4580 4826 66928045 66927802 2.250000e-68 270.0
28 TraesCS2B01G153700 chr4B 86.640 247 29 4 4580 4825 66999589 66999346 2.250000e-68 270.0
29 TraesCS2B01G153700 chr7A 85.970 335 38 6 4582 4914 650560410 650560737 2.820000e-92 350.0
30 TraesCS2B01G153700 chr7A 98.429 191 3 0 1432 1622 323738630 323738820 2.190000e-88 337.0
31 TraesCS2B01G153700 chr7A 96.392 194 7 0 1429 1622 593687179 593687372 2.210000e-83 320.0
32 TraesCS2B01G153700 chr7A 92.308 104 5 2 38 138 61816018 61815915 1.430000e-30 145.0
33 TraesCS2B01G153700 chr5B 96.970 198 5 1 1439 1635 147439815 147439618 1.020000e-86 331.0
34 TraesCS2B01G153700 chr3B 94.884 215 6 4 1430 1641 595691961 595692173 1.020000e-86 331.0
35 TraesCS2B01G153700 chr3B 87.692 65 8 0 3053 3117 766378783 766378847 5.280000e-10 76.8
36 TraesCS2B01G153700 chr7B 96.954 197 4 2 1426 1622 700410724 700410918 3.670000e-86 329.0
37 TraesCS2B01G153700 chr7B 93.953 215 7 6 1425 1638 411048513 411048304 2.210000e-83 320.0
38 TraesCS2B01G153700 chr7B 94.845 97 2 3 38 131 478835133 478835037 1.100000e-31 148.0
39 TraesCS2B01G153700 chr1B 96.500 200 6 1 1435 1634 225811977 225811779 3.670000e-86 329.0
40 TraesCS2B01G153700 chr1B 79.762 84 17 0 3053 3136 634498392 634498309 1.480000e-05 62.1
41 TraesCS2B01G153700 chr1B 100.000 30 0 0 3072 3101 634114405 634114376 6.870000e-04 56.5
42 TraesCS2B01G153700 chr3A 84.457 341 37 12 4582 4914 655652118 655652450 6.140000e-84 322.0
43 TraesCS2B01G153700 chr3A 82.808 349 42 12 4574 4914 648169398 648169060 3.720000e-76 296.0
44 TraesCS2B01G153700 chr3A 87.692 65 8 0 3053 3117 711078528 711078464 5.280000e-10 76.8
45 TraesCS2B01G153700 chr6A 90.000 240 21 3 4576 4814 464979215 464978978 1.720000e-79 307.0
46 TraesCS2B01G153700 chr6A 87.121 264 30 3 4581 4844 464962000 464962259 3.720000e-76 296.0
47 TraesCS2B01G153700 chr6A 85.932 263 33 3 4582 4844 266768736 266768478 1.350000e-70 278.0
48 TraesCS2B01G153700 chr6A 91.589 107 7 1 37 141 8173804 8173698 3.960000e-31 147.0
49 TraesCS2B01G153700 chr4A 90.129 233 23 0 4582 4814 577889447 577889215 2.220000e-78 303.0
50 TraesCS2B01G153700 chr1A 88.462 234 23 3 4582 4814 486389718 486389948 3.750000e-71 279.0
51 TraesCS2B01G153700 chr1A 82.292 192 29 5 4582 4773 582356137 582355951 1.420000e-35 161.0
52 TraesCS2B01G153700 chr1A 87.755 49 6 0 3053 3101 552964477 552964429 1.910000e-04 58.4
53 TraesCS2B01G153700 chr6D 83.043 230 35 4 4580 4808 17874374 17874148 6.450000e-49 206.0
54 TraesCS2B01G153700 chr6D 76.796 181 40 2 4582 4762 408917231 408917409 3.130000e-17 100.0
55 TraesCS2B01G153700 chr1D 88.820 161 16 2 4580 4740 11640476 11640634 3.880000e-46 196.0
56 TraesCS2B01G153700 chr1D 82.456 228 35 5 4582 4808 261725115 261725338 1.400000e-45 195.0
57 TraesCS2B01G153700 chr1D 81.140 228 39 4 4582 4808 11316592 11316368 3.910000e-41 180.0
58 TraesCS2B01G153700 chr1D 100.000 29 0 0 3073 3101 461502098 461502070 2.000000e-03 54.7
59 TraesCS2B01G153700 chr4D 87.730 163 18 1 4579 4741 305962929 305963089 6.490000e-44 189.0
60 TraesCS2B01G153700 chr4D 87.013 154 18 2 4581 4734 305964611 305964460 6.540000e-39 172.0
61 TraesCS2B01G153700 chr4D 95.604 91 4 0 1657 1747 268071264 268071174 3.960000e-31 147.0
62 TraesCS2B01G153700 chr4D 91.753 97 7 1 1653 1748 268071166 268071262 3.090000e-27 134.0
63 TraesCS2B01G153700 chr4D 92.045 88 7 0 1661 1748 379169332 379169419 1.860000e-24 124.0
64 TraesCS2B01G153700 chr5A 89.691 97 9 1 1651 1746 309680166 309680262 6.680000e-24 122.0
65 TraesCS2B01G153700 chr3D 87.692 65 8 0 3053 3117 575597100 575597036 5.280000e-10 76.8
66 TraesCS2B01G153700 chrUn 92.308 39 3 0 3063 3101 211006508 211006470 6.870000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G153700 chr2B 121666222 121671136 4914 True 9077.000000 9077 100.000000 1 4915 1 chr2B.!!$R1 4914
1 TraesCS2B01G153700 chr2D 78527051 78531565 4514 True 2374.333333 3982 93.945000 1 4581 3 chr2D.!!$R3 4580
2 TraesCS2B01G153700 chr2A 78808502 78811986 3484 True 1784.333333 3869 94.760333 1011 4574 3 chr2A.!!$R2 3563
3 TraesCS2B01G153700 chr2A 78839680 78840706 1026 True 1714.000000 1714 96.987000 1 1015 1 chr2A.!!$R1 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 484 1.824230 CGATTTTTCTTGGGCCATGGA 59.176 47.619 18.40 7.99 0.00 3.41 F
1533 1550 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74 F
1590 1607 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 F
1603 1620 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00 F
1604 1621 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66 F
1611 1628 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61 F
3109 3128 1.704628 TGATGCTTCTCCCACCTTGAA 59.295 47.619 0.88 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1577 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.0 0.00 2.69 R
2831 2849 1.680735 GGACATTTGGCGCAATGGATA 59.319 47.619 20.59 0.0 0.00 2.59 R
3584 3603 0.398318 AACTTGCCAGTGAGGAGTCC 59.602 55.000 0.00 0.0 41.22 3.85 R
3587 3606 1.071385 AGACAACTTGCCAGTGAGGAG 59.929 52.381 0.00 0.0 41.22 3.69 R
3594 3613 1.593196 TTCGGAAGACAACTTGCCAG 58.407 50.000 0.00 0.0 40.53 4.85 R
3606 3625 0.713883 CGATGTCGGTGTTTCGGAAG 59.286 55.000 0.00 0.0 35.37 3.46 R
4684 4862 0.028505 CCGCCGATCAATGCTTTCTG 59.971 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.198872 GAGATAAACTCAAAGCTCCCCG 58.801 50.000 0.00 0.00 44.36 5.73
46 47 4.611564 ACTCCATACAAGTACTCCCTCT 57.388 45.455 0.00 0.00 0.00 3.69
483 484 1.824230 CGATTTTTCTTGGGCCATGGA 59.176 47.619 18.40 7.99 0.00 3.41
578 579 3.967326 ACCCTGGAGACATCGATATTTCA 59.033 43.478 0.00 0.00 41.51 2.69
808 809 4.846779 AATGAAATTTGTGTGCTACCGT 57.153 36.364 0.00 0.00 26.74 4.83
985 1002 5.017490 AGCTCCTAGAGTTTGCTACAGTAA 58.983 41.667 0.00 0.00 31.71 2.24
999 1016 1.278127 ACAGTAACCTCCAACCCATCG 59.722 52.381 0.00 0.00 0.00 3.84
1370 1387 5.346270 ACCTCCTTTCAGAAAGACTCCTAT 58.654 41.667 22.55 0.84 41.02 2.57
1386 1403 4.406003 ACTCCTATAAAGCACGAGGTCAAT 59.594 41.667 0.00 0.00 0.00 2.57
1427 1444 7.848223 ATTGACATTAGATTCGTCATGACAA 57.152 32.000 24.93 17.45 39.29 3.18
1428 1445 7.665561 TTGACATTAGATTCGTCATGACAAA 57.334 32.000 24.93 14.36 39.29 2.83
1429 1446 7.060600 TGACATTAGATTCGTCATGACAAAC 57.939 36.000 24.93 15.67 34.83 2.93
1430 1447 6.648725 TGACATTAGATTCGTCATGACAAACA 59.351 34.615 24.93 6.22 34.83 2.83
1431 1448 7.334171 TGACATTAGATTCGTCATGACAAACAT 59.666 33.333 24.93 10.64 40.17 2.71
1432 1449 8.044060 ACATTAGATTCGTCATGACAAACATT 57.956 30.769 24.93 8.50 37.07 2.71
1433 1450 8.514594 ACATTAGATTCGTCATGACAAACATTT 58.485 29.630 24.93 8.73 37.07 2.32
1434 1451 9.345517 CATTAGATTCGTCATGACAAACATTTT 57.654 29.630 24.93 0.00 37.07 1.82
1462 1479 2.045045 GGCAGCCCAGTGCATGTA 60.045 61.111 0.00 0.00 45.93 2.29
1463 1480 2.117156 GGCAGCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 45.93 2.74
1464 1481 2.768492 GCAGCCCAGTGCATGTAGC 61.768 63.158 0.00 0.00 43.41 3.58
1465 1482 1.077930 CAGCCCAGTGCATGTAGCT 60.078 57.895 0.00 0.00 45.94 3.32
1466 1483 1.094073 CAGCCCAGTGCATGTAGCTC 61.094 60.000 0.00 0.00 45.94 4.09
1467 1484 1.821332 GCCCAGTGCATGTAGCTCC 60.821 63.158 0.00 0.00 45.94 4.70
1468 1485 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1469 1486 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1470 1487 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
1472 1489 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1473 1490 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1474 1491 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1475 1492 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1478 1495 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1494 1511 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
1501 1518 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
1502 1519 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1503 1520 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1504 1521 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1505 1522 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1506 1523 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1507 1524 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1508 1525 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1518 1535 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1519 1536 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1520 1537 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1521 1538 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1522 1539 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1523 1540 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1524 1541 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1525 1542 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1526 1543 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1527 1544 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1528 1545 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1529 1546 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1530 1547 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1531 1548 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1532 1549 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1533 1550 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1534 1551 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1535 1552 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1536 1553 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1537 1554 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1538 1555 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1539 1556 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1540 1557 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1541 1558 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1542 1559 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1543 1560 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1544 1561 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1556 1573 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1557 1574 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1558 1575 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1559 1576 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1560 1577 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1561 1578 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1562 1579 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1563 1580 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1564 1581 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1565 1582 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1566 1583 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1567 1584 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1568 1585 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1569 1586 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
1570 1587 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
1571 1588 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
1572 1589 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
1573 1590 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
1574 1591 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
1575 1592 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1576 1593 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
1577 1594 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
1578 1595 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
1589 1606 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1590 1607 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1591 1608 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1592 1609 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1593 1610 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1594 1611 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1595 1612 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1596 1613 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1597 1614 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1598 1615 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1599 1616 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1600 1617 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1601 1618 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1602 1619 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1603 1620 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1604 1621 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1608 1625 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1609 1626 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1610 1627 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1611 1628 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1612 1629 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1613 1630 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1614 1631 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1615 1632 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1628 1645 3.435682 AGGCTCCCCTTCCATAACA 57.564 52.632 0.00 0.00 38.74 2.41
2633 2651 9.206870 ACATTGCTTAAAGATACCACATTTTTG 57.793 29.630 0.00 0.00 0.00 2.44
2752 2770 4.381398 CCCTGATACATATCTCGCTTGGAG 60.381 50.000 0.82 0.00 44.58 3.86
2790 2808 4.890088 AGAAAATGCAAATGACATGTGCT 58.110 34.783 26.93 10.46 39.09 4.40
2820 2838 4.040952 CCTAACCTGCTCCATTATGCTAGT 59.959 45.833 0.00 0.00 0.00 2.57
2831 2849 4.142093 CCATTATGCTAGTGCCAAGCTTTT 60.142 41.667 0.00 0.00 40.73 2.27
2841 2859 2.195922 GCCAAGCTTTTATCCATTGCG 58.804 47.619 0.00 0.00 0.00 4.85
2943 2962 9.886132 TTCTTGATCTAAGTTATAAACCCTGAC 57.114 33.333 0.00 0.00 37.65 3.51
2944 2963 9.042450 TCTTGATCTAAGTTATAAACCCTGACA 57.958 33.333 0.00 0.00 37.65 3.58
2988 3007 6.483307 TCTTTTTCAGACAGTCAATACACCTG 59.517 38.462 2.66 0.00 0.00 4.00
3046 3065 6.690530 TGGAGATAAAACTTTTCATGCCAAG 58.309 36.000 2.95 2.95 0.00 3.61
3109 3128 1.704628 TGATGCTTCTCCCACCTTGAA 59.295 47.619 0.88 0.00 0.00 2.69
3147 3166 5.411361 CGTGTAAGTCATTCTTCATTTCCCA 59.589 40.000 0.00 0.00 37.56 4.37
3148 3167 6.402550 CGTGTAAGTCATTCTTCATTTCCCAG 60.403 42.308 0.00 0.00 37.56 4.45
3149 3168 6.431234 GTGTAAGTCATTCTTCATTTCCCAGT 59.569 38.462 0.00 0.00 37.56 4.00
3150 3169 7.004086 TGTAAGTCATTCTTCATTTCCCAGTT 58.996 34.615 0.00 0.00 37.56 3.16
3222 3241 2.029838 AGGCAGATTAGTTTGGCTCG 57.970 50.000 0.00 0.00 45.85 5.03
3269 3288 6.663523 TCATCCTTTATCCTTTTCCTTCCAAC 59.336 38.462 0.00 0.00 0.00 3.77
3270 3289 5.959512 TCCTTTATCCTTTTCCTTCCAACA 58.040 37.500 0.00 0.00 0.00 3.33
3271 3290 6.377912 TCCTTTATCCTTTTCCTTCCAACAA 58.622 36.000 0.00 0.00 0.00 2.83
3376 3395 7.607615 ACTACCTTGGTAAACTTCTTACTGA 57.392 36.000 0.91 0.00 0.00 3.41
3380 3399 8.221965 ACCTTGGTAAACTTCTTACTGAAAAG 57.778 34.615 0.00 0.00 33.79 2.27
3390 3409 6.599638 ACTTCTTACTGAAAAGCACTTGTTCT 59.400 34.615 0.00 0.00 33.79 3.01
3402 3421 4.335594 AGCACTTGTTCTTGGTGTTACTTC 59.664 41.667 0.00 0.00 33.96 3.01
3405 3424 5.817816 CACTTGTTCTTGGTGTTACTTCTCT 59.182 40.000 0.00 0.00 0.00 3.10
3447 3466 8.031864 ACTCTTATGATCAGCCGATTTACTATG 58.968 37.037 0.09 0.00 29.66 2.23
3454 3473 3.425525 CAGCCGATTTACTATGCTGTACG 59.574 47.826 0.00 0.00 43.32 3.67
3455 3474 3.067742 AGCCGATTTACTATGCTGTACGT 59.932 43.478 0.00 0.00 0.00 3.57
3456 3475 4.276678 AGCCGATTTACTATGCTGTACGTA 59.723 41.667 0.00 0.00 0.00 3.57
3457 3476 4.977963 GCCGATTTACTATGCTGTACGTAA 59.022 41.667 0.00 0.00 0.00 3.18
3458 3477 5.632347 GCCGATTTACTATGCTGTACGTAAT 59.368 40.000 0.00 0.00 0.00 1.89
3459 3478 6.803320 GCCGATTTACTATGCTGTACGTAATA 59.197 38.462 0.00 0.00 0.00 0.98
3508 3527 8.898761 TGTGTCTAGTTTTGCTTAAGAAATTGA 58.101 29.630 6.67 0.00 0.00 2.57
3509 3528 9.170584 GTGTCTAGTTTTGCTTAAGAAATTGAC 57.829 33.333 6.67 8.26 0.00 3.18
3515 3534 6.707440 TTTGCTTAAGAAATTGACAGTGGA 57.293 33.333 6.67 0.00 0.00 4.02
3578 3597 6.378280 GTGGTTTGATTCCTGGAGTCAATATT 59.622 38.462 28.27 0.00 37.92 1.28
3584 3603 2.103094 TCCTGGAGTCAATATTGGCGAG 59.897 50.000 14.14 11.07 37.98 5.03
3587 3606 2.158957 TGGAGTCAATATTGGCGAGGAC 60.159 50.000 14.14 4.69 37.98 3.85
3589 3608 3.385577 GAGTCAATATTGGCGAGGACTC 58.614 50.000 14.14 13.90 42.82 3.36
3606 3625 1.202698 ACTCCTCACTGGCAAGTTGTC 60.203 52.381 0.00 0.00 32.98 3.18
3741 3760 3.705051 CACCTTACCCTGGACACTACTA 58.295 50.000 0.00 0.00 0.00 1.82
3809 3828 3.081804 GGATACAATTATGGAAGCCCGG 58.918 50.000 0.00 0.00 34.29 5.73
3926 3945 9.500785 TGTCAAGAATGTTGAGTTATGTTATCA 57.499 29.630 0.00 0.00 0.00 2.15
4008 4027 6.436027 TCAATGACATCTCTACTACTCCCTT 58.564 40.000 0.00 0.00 0.00 3.95
4009 4028 6.897966 TCAATGACATCTCTACTACTCCCTTT 59.102 38.462 0.00 0.00 0.00 3.11
4074 4214 9.814899 ACACATAATGAACTCAAAACATTTCAA 57.185 25.926 0.00 0.00 36.06 2.69
4136 4295 4.539083 TTGGCAGTGTGCGTCGGT 62.539 61.111 0.00 0.00 46.21 4.69
4214 4373 3.120165 TCGATGACTATGTCGCTATGAGC 60.120 47.826 0.00 0.00 37.74 4.26
4384 4543 1.218047 CGGCCGATCTTTCCACTGA 59.782 57.895 24.07 0.00 0.00 3.41
4424 4601 3.997021 GCTTTTCACTCTTCGGATCTTCA 59.003 43.478 0.00 0.00 0.00 3.02
4488 4666 2.932614 GTCAACTATGCGAGCTGTTCAT 59.067 45.455 0.00 0.00 0.00 2.57
4489 4667 3.372206 GTCAACTATGCGAGCTGTTCATT 59.628 43.478 0.00 0.00 0.00 2.57
4491 4669 1.667724 ACTATGCGAGCTGTTCATTGC 59.332 47.619 0.00 0.00 0.00 3.56
4528 4706 3.041211 TCCAGTAGGGGTCATCAATGAG 58.959 50.000 0.00 0.00 34.61 2.90
4561 4739 1.457823 TTGCCGTGTAGACTCGTGGT 61.458 55.000 3.75 0.00 0.00 4.16
4602 4780 9.984190 TTTTGGAGTAAATTGTATAAAACCACC 57.016 29.630 0.00 0.00 0.00 4.61
4603 4781 8.707796 TTGGAGTAAATTGTATAAAACCACCA 57.292 30.769 0.00 0.00 0.00 4.17
4604 4782 8.113173 TGGAGTAAATTGTATAAAACCACCAC 57.887 34.615 0.00 0.00 0.00 4.16
4605 4783 7.945664 TGGAGTAAATTGTATAAAACCACCACT 59.054 33.333 0.00 0.00 0.00 4.00
4606 4784 8.799367 GGAGTAAATTGTATAAAACCACCACTT 58.201 33.333 0.00 0.00 0.00 3.16
4608 4786 9.974980 AGTAAATTGTATAAAACCACCACTTTG 57.025 29.630 0.00 0.00 0.00 2.77
4609 4787 9.968870 GTAAATTGTATAAAACCACCACTTTGA 57.031 29.630 0.00 0.00 0.00 2.69
4611 4789 9.541143 AAATTGTATAAAACCACCACTTTGAAG 57.459 29.630 0.00 0.00 0.00 3.02
4612 4790 6.642707 TGTATAAAACCACCACTTTGAAGG 57.357 37.500 0.00 0.00 0.00 3.46
4613 4791 2.979814 AAAACCACCACTTTGAAGGC 57.020 45.000 0.00 0.00 0.00 4.35
4614 4792 1.859302 AAACCACCACTTTGAAGGCA 58.141 45.000 0.00 0.00 0.00 4.75
4615 4793 1.859302 AACCACCACTTTGAAGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
4616 4794 1.402787 ACCACCACTTTGAAGGCAAG 58.597 50.000 0.00 0.00 35.04 4.01
4617 4795 0.675633 CCACCACTTTGAAGGCAAGG 59.324 55.000 0.00 0.00 37.16 3.61
4618 4796 1.402787 CACCACTTTGAAGGCAAGGT 58.597 50.000 0.00 0.00 44.09 3.50
4619 4797 1.756538 CACCACTTTGAAGGCAAGGTT 59.243 47.619 0.00 0.00 40.94 3.50
4620 4798 2.168313 CACCACTTTGAAGGCAAGGTTT 59.832 45.455 0.00 0.00 40.94 3.27
4621 4799 2.168313 ACCACTTTGAAGGCAAGGTTTG 59.832 45.455 0.00 0.00 40.94 2.93
4622 4800 2.168313 CCACTTTGAAGGCAAGGTTTGT 59.832 45.455 0.00 0.00 40.94 2.83
4623 4801 3.189285 CACTTTGAAGGCAAGGTTTGTG 58.811 45.455 0.00 0.00 40.94 3.33
4624 4802 3.096092 ACTTTGAAGGCAAGGTTTGTGA 58.904 40.909 0.00 0.00 40.94 3.58
4625 4803 3.513515 ACTTTGAAGGCAAGGTTTGTGAA 59.486 39.130 0.00 0.00 40.94 3.18
4626 4804 4.020662 ACTTTGAAGGCAAGGTTTGTGAAA 60.021 37.500 0.00 0.00 40.94 2.69
4627 4805 4.543590 TTGAAGGCAAGGTTTGTGAAAA 57.456 36.364 0.00 0.00 0.00 2.29
4628 4806 3.855858 TGAAGGCAAGGTTTGTGAAAAC 58.144 40.909 0.00 0.00 0.00 2.43
4642 4820 8.920509 GTTTGTGAAAACCACTACAATACTTT 57.079 30.769 0.00 0.00 45.86 2.66
4643 4821 9.361315 GTTTGTGAAAACCACTACAATACTTTT 57.639 29.630 0.00 0.00 45.86 2.27
4644 4822 9.930693 TTTGTGAAAACCACTACAATACTTTTT 57.069 25.926 0.00 0.00 45.86 1.94
4666 4844 5.883503 TTCTTTTGTAGAAAACACCGTGT 57.116 34.783 0.00 0.00 39.90 4.49
4667 4845 5.473796 TCTTTTGTAGAAAACACCGTGTC 57.526 39.130 4.23 0.00 38.00 3.67
4668 4846 5.180271 TCTTTTGTAGAAAACACCGTGTCT 58.820 37.500 4.23 0.57 38.00 3.41
4669 4847 5.644636 TCTTTTGTAGAAAACACCGTGTCTT 59.355 36.000 4.23 0.00 38.00 3.01
4670 4848 5.473796 TTTGTAGAAAACACCGTGTCTTC 57.526 39.130 9.35 9.35 38.00 2.87
4671 4849 3.117794 TGTAGAAAACACCGTGTCTTCG 58.882 45.455 11.22 0.00 31.43 3.79
4678 4856 4.598257 CCGTGTCTTCGGCAATCT 57.402 55.556 0.00 0.00 43.96 2.40
4679 4857 2.840974 CCGTGTCTTCGGCAATCTT 58.159 52.632 0.00 0.00 43.96 2.40
4680 4858 1.156736 CCGTGTCTTCGGCAATCTTT 58.843 50.000 0.00 0.00 43.96 2.52
4681 4859 1.535462 CCGTGTCTTCGGCAATCTTTT 59.465 47.619 0.00 0.00 43.96 2.27
4682 4860 2.031157 CCGTGTCTTCGGCAATCTTTTT 60.031 45.455 0.00 0.00 43.96 1.94
4683 4861 2.973224 CGTGTCTTCGGCAATCTTTTTG 59.027 45.455 0.00 0.00 0.00 2.44
4684 4862 2.726241 GTGTCTTCGGCAATCTTTTTGC 59.274 45.455 1.76 1.76 44.22 3.68
4685 4863 2.360483 TGTCTTCGGCAATCTTTTTGCA 59.640 40.909 11.91 0.00 46.58 4.08
4686 4864 2.982470 GTCTTCGGCAATCTTTTTGCAG 59.018 45.455 11.91 8.17 46.58 4.41
4687 4865 2.884012 TCTTCGGCAATCTTTTTGCAGA 59.116 40.909 11.91 10.27 46.58 4.26
4689 4867 3.724508 TCGGCAATCTTTTTGCAGAAA 57.275 38.095 10.04 2.07 44.23 2.52
4690 4868 3.641648 TCGGCAATCTTTTTGCAGAAAG 58.358 40.909 20.73 20.73 44.23 2.62
4691 4869 2.156310 CGGCAATCTTTTTGCAGAAAGC 59.844 45.455 21.68 12.60 46.58 3.51
4701 4879 3.247033 GCAGAAAGCATTGATCGGC 57.753 52.632 0.00 0.00 44.79 5.54
4702 4880 0.590732 GCAGAAAGCATTGATCGGCG 60.591 55.000 0.00 0.00 44.79 6.46
4703 4881 0.028505 CAGAAAGCATTGATCGGCGG 59.971 55.000 7.21 0.00 34.54 6.13
4704 4882 0.107703 AGAAAGCATTGATCGGCGGA 60.108 50.000 7.21 0.00 34.54 5.54
4705 4883 0.947244 GAAAGCATTGATCGGCGGAT 59.053 50.000 7.21 6.45 34.96 4.18
4712 4890 4.955089 GATCGGCGGATCAGTCTC 57.045 61.111 24.77 2.34 46.81 3.36
4713 4891 2.033793 GATCGGCGGATCAGTCTCA 58.966 57.895 24.77 0.00 46.81 3.27
4714 4892 0.039617 GATCGGCGGATCAGTCTCAG 60.040 60.000 24.77 0.00 46.81 3.35
4715 4893 0.753479 ATCGGCGGATCAGTCTCAGT 60.753 55.000 7.21 0.00 0.00 3.41
4716 4894 0.965866 TCGGCGGATCAGTCTCAGTT 60.966 55.000 7.21 0.00 0.00 3.16
4717 4895 0.738975 CGGCGGATCAGTCTCAGTTA 59.261 55.000 0.00 0.00 0.00 2.24
4718 4896 1.134367 CGGCGGATCAGTCTCAGTTAA 59.866 52.381 0.00 0.00 0.00 2.01
4719 4897 2.796383 CGGCGGATCAGTCTCAGTTAAG 60.796 54.545 0.00 0.00 0.00 1.85
4720 4898 2.197577 GCGGATCAGTCTCAGTTAAGC 58.802 52.381 0.00 0.00 0.00 3.09
4721 4899 2.159170 GCGGATCAGTCTCAGTTAAGCT 60.159 50.000 0.00 0.00 0.00 3.74
4722 4900 3.677424 GCGGATCAGTCTCAGTTAAGCTT 60.677 47.826 3.48 3.48 0.00 3.74
4723 4901 3.862267 CGGATCAGTCTCAGTTAAGCTTG 59.138 47.826 9.86 0.00 0.00 4.01
4724 4902 4.619394 CGGATCAGTCTCAGTTAAGCTTGT 60.619 45.833 9.86 0.00 0.00 3.16
4725 4903 5.241662 GGATCAGTCTCAGTTAAGCTTGTT 58.758 41.667 9.86 0.00 0.00 2.83
4726 4904 5.703130 GGATCAGTCTCAGTTAAGCTTGTTT 59.297 40.000 9.86 0.00 0.00 2.83
4727 4905 6.874134 GGATCAGTCTCAGTTAAGCTTGTTTA 59.126 38.462 9.86 0.00 0.00 2.01
4728 4906 7.550906 GGATCAGTCTCAGTTAAGCTTGTTTAT 59.449 37.037 9.86 0.00 0.00 1.40
4729 4907 7.658179 TCAGTCTCAGTTAAGCTTGTTTATG 57.342 36.000 9.86 1.05 0.00 1.90
4730 4908 7.441836 TCAGTCTCAGTTAAGCTTGTTTATGA 58.558 34.615 9.86 5.47 0.00 2.15
4731 4909 7.385205 TCAGTCTCAGTTAAGCTTGTTTATGAC 59.615 37.037 9.86 10.63 0.00 3.06
4732 4910 7.171508 CAGTCTCAGTTAAGCTTGTTTATGACA 59.828 37.037 9.86 0.00 36.19 3.58
4733 4911 7.386299 AGTCTCAGTTAAGCTTGTTTATGACAG 59.614 37.037 9.86 0.00 39.94 3.51
4734 4912 6.650807 TCTCAGTTAAGCTTGTTTATGACAGG 59.349 38.462 9.86 0.00 39.94 4.00
4735 4913 6.296026 TCAGTTAAGCTTGTTTATGACAGGT 58.704 36.000 9.86 0.00 39.94 4.00
4736 4914 6.204688 TCAGTTAAGCTTGTTTATGACAGGTG 59.795 38.462 9.86 0.00 39.94 4.00
4737 4915 5.473504 AGTTAAGCTTGTTTATGACAGGTGG 59.526 40.000 9.86 0.00 39.94 4.61
4738 4916 2.795329 AGCTTGTTTATGACAGGTGGG 58.205 47.619 0.00 0.00 39.94 4.61
4739 4917 1.818674 GCTTGTTTATGACAGGTGGGG 59.181 52.381 0.00 0.00 39.94 4.96
4740 4918 1.818674 CTTGTTTATGACAGGTGGGGC 59.181 52.381 0.00 0.00 39.94 5.80
4741 4919 0.774276 TGTTTATGACAGGTGGGGCA 59.226 50.000 0.00 0.00 33.40 5.36
4742 4920 1.173913 GTTTATGACAGGTGGGGCAC 58.826 55.000 0.00 0.00 0.00 5.01
4743 4921 1.072266 TTTATGACAGGTGGGGCACT 58.928 50.000 0.00 0.00 34.40 4.40
4744 4922 1.072266 TTATGACAGGTGGGGCACTT 58.928 50.000 0.00 0.00 34.40 3.16
4745 4923 1.072266 TATGACAGGTGGGGCACTTT 58.928 50.000 0.00 0.00 34.40 2.66
4746 4924 0.188342 ATGACAGGTGGGGCACTTTT 59.812 50.000 0.00 0.00 34.40 2.27
4747 4925 0.032615 TGACAGGTGGGGCACTTTTT 60.033 50.000 0.00 0.00 34.40 1.94
4763 4941 1.355916 TTTTTGCGTACGTGGCACC 59.644 52.632 17.90 0.00 40.71 5.01
4764 4942 2.376231 TTTTTGCGTACGTGGCACCG 62.376 55.000 17.90 11.17 40.71 4.94
4765 4943 4.588854 TTGCGTACGTGGCACCGT 62.589 61.111 17.90 15.21 40.71 4.83
4786 4964 3.751246 CTGTCCCGACCGCCGTTA 61.751 66.667 0.00 0.00 36.31 3.18
4787 4965 3.695022 CTGTCCCGACCGCCGTTAG 62.695 68.421 0.00 0.00 36.31 2.34
4788 4966 3.443045 GTCCCGACCGCCGTTAGA 61.443 66.667 0.00 0.00 36.31 2.10
4789 4967 3.443045 TCCCGACCGCCGTTAGAC 61.443 66.667 0.00 0.00 36.31 2.59
4790 4968 4.842091 CCCGACCGCCGTTAGACG 62.842 72.222 0.00 0.00 42.11 4.18
4818 4996 4.465512 GCGCCGTGTGCCTTCATG 62.466 66.667 0.00 0.00 36.24 3.07
4819 4997 4.465512 CGCCGTGTGCCTTCATGC 62.466 66.667 0.00 0.00 36.24 4.06
4820 4998 4.120331 GCCGTGTGCCTTCATGCC 62.120 66.667 0.00 0.00 0.00 4.40
4821 4999 3.443045 CCGTGTGCCTTCATGCCC 61.443 66.667 0.00 0.00 0.00 5.36
4822 5000 3.443045 CGTGTGCCTTCATGCCCC 61.443 66.667 0.00 0.00 0.00 5.80
4823 5001 3.070576 GTGTGCCTTCATGCCCCC 61.071 66.667 0.00 0.00 0.00 5.40
4824 5002 3.267233 TGTGCCTTCATGCCCCCT 61.267 61.111 0.00 0.00 0.00 4.79
4825 5003 2.440980 GTGCCTTCATGCCCCCTC 60.441 66.667 0.00 0.00 0.00 4.30
4826 5004 2.614969 TGCCTTCATGCCCCCTCT 60.615 61.111 0.00 0.00 0.00 3.69
4827 5005 2.123982 GCCTTCATGCCCCCTCTG 60.124 66.667 0.00 0.00 0.00 3.35
4828 5006 2.988839 GCCTTCATGCCCCCTCTGT 61.989 63.158 0.00 0.00 0.00 3.41
4829 5007 1.693640 CCTTCATGCCCCCTCTGTT 59.306 57.895 0.00 0.00 0.00 3.16
4830 5008 0.394899 CCTTCATGCCCCCTCTGTTC 60.395 60.000 0.00 0.00 0.00 3.18
4831 5009 0.745845 CTTCATGCCCCCTCTGTTCG 60.746 60.000 0.00 0.00 0.00 3.95
4832 5010 1.488705 TTCATGCCCCCTCTGTTCGT 61.489 55.000 0.00 0.00 0.00 3.85
4833 5011 1.002134 CATGCCCCCTCTGTTCGTT 60.002 57.895 0.00 0.00 0.00 3.85
4834 5012 0.609131 CATGCCCCCTCTGTTCGTTT 60.609 55.000 0.00 0.00 0.00 3.60
4835 5013 0.609131 ATGCCCCCTCTGTTCGTTTG 60.609 55.000 0.00 0.00 0.00 2.93
4836 5014 1.228154 GCCCCCTCTGTTCGTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
4837 5015 1.235281 GCCCCCTCTGTTCGTTTGTC 61.235 60.000 0.00 0.00 0.00 3.18
4838 5016 0.605589 CCCCCTCTGTTCGTTTGTCC 60.606 60.000 0.00 0.00 0.00 4.02
4839 5017 0.605589 CCCCTCTGTTCGTTTGTCCC 60.606 60.000 0.00 0.00 0.00 4.46
4840 5018 0.605589 CCCTCTGTTCGTTTGTCCCC 60.606 60.000 0.00 0.00 0.00 4.81
4841 5019 0.605589 CCTCTGTTCGTTTGTCCCCC 60.606 60.000 0.00 0.00 0.00 5.40
4842 5020 0.396811 CTCTGTTCGTTTGTCCCCCT 59.603 55.000 0.00 0.00 0.00 4.79
4843 5021 0.395312 TCTGTTCGTTTGTCCCCCTC 59.605 55.000 0.00 0.00 0.00 4.30
4844 5022 0.949105 CTGTTCGTTTGTCCCCCTCG 60.949 60.000 0.00 0.00 0.00 4.63
4845 5023 2.031465 TTCGTTTGTCCCCCTCGC 59.969 61.111 0.00 0.00 0.00 5.03
4846 5024 3.540367 TTCGTTTGTCCCCCTCGCC 62.540 63.158 0.00 0.00 0.00 5.54
4848 5026 4.735358 GTTTGTCCCCCTCGCCCC 62.735 72.222 0.00 0.00 0.00 5.80
4871 5049 4.498520 CTCGCGTCTGCCCGATGT 62.499 66.667 5.77 0.00 38.08 3.06
4872 5050 3.989698 CTCGCGTCTGCCCGATGTT 62.990 63.158 5.77 0.00 38.08 2.71
4873 5051 3.554692 CGCGTCTGCCCGATGTTC 61.555 66.667 0.00 0.00 38.08 3.18
4874 5052 3.195698 GCGTCTGCCCGATGTTCC 61.196 66.667 0.00 0.00 33.98 3.62
4875 5053 2.511600 CGTCTGCCCGATGTTCCC 60.512 66.667 0.00 0.00 0.00 3.97
4876 5054 2.124695 GTCTGCCCGATGTTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
4877 5055 2.285368 TCTGCCCGATGTTCCCCT 60.285 61.111 0.00 0.00 0.00 4.79
4878 5056 1.923395 TCTGCCCGATGTTCCCCTT 60.923 57.895 0.00 0.00 0.00 3.95
4879 5057 1.452108 CTGCCCGATGTTCCCCTTC 60.452 63.158 0.00 0.00 0.00 3.46
4880 5058 1.915078 CTGCCCGATGTTCCCCTTCT 61.915 60.000 0.00 0.00 0.00 2.85
4881 5059 1.303282 GCCCGATGTTCCCCTTCTT 59.697 57.895 0.00 0.00 0.00 2.52
4882 5060 0.748367 GCCCGATGTTCCCCTTCTTC 60.748 60.000 0.00 0.00 0.00 2.87
4883 5061 0.107165 CCCGATGTTCCCCTTCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
4884 5062 0.107165 CCGATGTTCCCCTTCTTCCC 60.107 60.000 0.00 0.00 0.00 3.97
4885 5063 0.107165 CGATGTTCCCCTTCTTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
4886 5064 0.259065 GATGTTCCCCTTCTTCCCCC 59.741 60.000 0.00 0.00 0.00 5.40
4900 5078 2.528708 CCCCCTCTCCTATCCGCT 59.471 66.667 0.00 0.00 0.00 5.52
4901 5079 1.152226 CCCCCTCTCCTATCCGCTT 60.152 63.158 0.00 0.00 0.00 4.68
4902 5080 0.764752 CCCCCTCTCCTATCCGCTTT 60.765 60.000 0.00 0.00 0.00 3.51
4903 5081 0.682292 CCCCTCTCCTATCCGCTTTC 59.318 60.000 0.00 0.00 0.00 2.62
4904 5082 1.710816 CCCTCTCCTATCCGCTTTCT 58.289 55.000 0.00 0.00 0.00 2.52
4905 5083 1.616374 CCCTCTCCTATCCGCTTTCTC 59.384 57.143 0.00 0.00 0.00 2.87
4906 5084 1.616374 CCTCTCCTATCCGCTTTCTCC 59.384 57.143 0.00 0.00 0.00 3.71
4907 5085 1.616374 CTCTCCTATCCGCTTTCTCCC 59.384 57.143 0.00 0.00 0.00 4.30
4908 5086 0.682292 CTCCTATCCGCTTTCTCCCC 59.318 60.000 0.00 0.00 0.00 4.81
4909 5087 0.264955 TCCTATCCGCTTTCTCCCCT 59.735 55.000 0.00 0.00 0.00 4.79
4910 5088 0.682292 CCTATCCGCTTTCTCCCCTC 59.318 60.000 0.00 0.00 0.00 4.30
4911 5089 0.682292 CTATCCGCTTTCTCCCCTCC 59.318 60.000 0.00 0.00 0.00 4.30
4912 5090 0.264955 TATCCGCTTTCTCCCCTCCT 59.735 55.000 0.00 0.00 0.00 3.69
4913 5091 1.051556 ATCCGCTTTCTCCCCTCCTC 61.052 60.000 0.00 0.00 0.00 3.71
4914 5092 2.496817 CGCTTTCTCCCCTCCTCG 59.503 66.667 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.197983 AGGGAGTACTTGTATGGAGTTGC 59.802 47.826 0.00 0.00 0.00 4.17
46 47 7.996644 ACTAAAGTTGAGACTTATTTTGGGACA 59.003 33.333 0.00 0.00 45.18 4.02
483 484 1.194781 ACCGCCTCTCACACAAGGAT 61.195 55.000 0.00 0.00 34.35 3.24
578 579 0.108585 ATGAGGCACACTTGAACCGT 59.891 50.000 0.00 0.00 0.00 4.83
808 809 1.693606 TGACAACTCCATCTCAGCACA 59.306 47.619 0.00 0.00 0.00 4.57
985 1002 1.915228 CCATCGATGGGTTGGAGGT 59.085 57.895 32.99 0.00 44.31 3.85
999 1016 1.347378 GAGGATGAGGAGGAAGCCATC 59.653 57.143 0.00 0.00 35.81 3.51
1370 1387 3.953712 TCTGATTGACCTCGTGCTTTA 57.046 42.857 0.00 0.00 0.00 1.85
1439 1456 2.510551 GCACTGGGCTGCCCTTTTT 61.511 57.895 35.80 16.08 45.70 1.94
1440 1457 2.919328 GCACTGGGCTGCCCTTTT 60.919 61.111 35.80 18.58 45.70 2.27
1441 1458 3.534704 ATGCACTGGGCTGCCCTTT 62.535 57.895 35.80 21.12 45.70 3.11
1442 1459 3.988678 ATGCACTGGGCTGCCCTT 61.989 61.111 35.80 21.48 45.70 3.95
1443 1460 4.753662 CATGCACTGGGCTGCCCT 62.754 66.667 35.80 16.65 45.70 5.19
1444 1461 3.643595 TACATGCACTGGGCTGCCC 62.644 63.158 30.97 30.97 45.71 5.36
1445 1462 2.045045 TACATGCACTGGGCTGCC 60.045 61.111 11.05 11.05 45.15 4.85
1446 1463 2.768492 GCTACATGCACTGGGCTGC 61.768 63.158 2.50 0.00 45.15 5.25
1447 1464 1.077930 AGCTACATGCACTGGGCTG 60.078 57.895 2.50 1.44 45.94 4.85
1448 1465 1.222936 GAGCTACATGCACTGGGCT 59.777 57.895 2.50 13.76 45.94 5.19
1449 1466 1.821332 GGAGCTACATGCACTGGGC 60.821 63.158 0.00 0.00 45.94 5.36
1450 1467 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1451 1468 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1452 1469 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
1477 1494 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
1484 1501 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
1485 1502 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1486 1503 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1487 1504 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1488 1505 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1489 1506 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1490 1507 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1491 1508 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1492 1509 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1497 1514 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1498 1515 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1499 1516 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1500 1517 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1501 1518 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1502 1519 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1503 1520 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1504 1521 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1505 1522 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1506 1523 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1507 1524 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1508 1525 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1509 1526 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1510 1527 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1511 1528 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1512 1529 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1513 1530 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1514 1531 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1515 1532 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1516 1533 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1517 1534 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1518 1535 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1519 1536 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1520 1537 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1521 1538 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1522 1539 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1523 1540 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1524 1541 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1525 1542 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1526 1543 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1527 1544 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1528 1545 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1529 1546 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1530 1547 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1531 1548 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1532 1549 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1533 1550 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1534 1551 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1548 1565 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
1549 1566 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
1550 1567 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
1551 1568 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
1552 1569 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
1553 1570 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
1554 1571 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
1555 1572 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
1556 1573 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
1557 1574 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
1558 1575 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
1559 1576 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
1560 1577 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
1561 1578 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
1562 1579 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1572 1589 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1573 1590 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1574 1591 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1575 1592 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1576 1593 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1577 1594 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1578 1595 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1579 1596 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1580 1597 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1581 1598 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1582 1599 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1583 1600 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1584 1601 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1585 1602 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1586 1603 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1591 1608 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1592 1609 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1593 1610 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1594 1611 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1595 1612 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1596 1613 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1597 1614 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1605 1622 4.803908 GGAAGGGGAGCCTTGGCG 62.804 72.222 5.95 0.00 0.00 5.69
1606 1623 1.645402 TATGGAAGGGGAGCCTTGGC 61.645 60.000 2.97 2.97 0.00 4.52
1607 1624 0.926293 TTATGGAAGGGGAGCCTTGG 59.074 55.000 0.00 0.00 0.00 3.61
1608 1625 1.284785 TGTTATGGAAGGGGAGCCTTG 59.715 52.381 0.00 0.00 0.00 3.61
1609 1626 1.681229 TGTTATGGAAGGGGAGCCTT 58.319 50.000 0.00 0.00 0.00 4.35
1610 1627 1.681229 TTGTTATGGAAGGGGAGCCT 58.319 50.000 0.00 0.00 0.00 4.58
1611 1628 2.100197 GTTTGTTATGGAAGGGGAGCC 58.900 52.381 0.00 0.00 0.00 4.70
1612 1629 2.802719 TGTTTGTTATGGAAGGGGAGC 58.197 47.619 0.00 0.00 0.00 4.70
1613 1630 6.358974 AAAATGTTTGTTATGGAAGGGGAG 57.641 37.500 0.00 0.00 0.00 4.30
1614 1631 7.857404 TTAAAATGTTTGTTATGGAAGGGGA 57.143 32.000 0.00 0.00 0.00 4.81
2633 2651 2.093658 TCCAGGATGTTAAGCTTCGACC 60.094 50.000 0.00 1.00 0.00 4.79
2752 2770 5.333568 GCATTTTCTTCACTTGCAATGAACC 60.334 40.000 15.74 2.11 32.67 3.62
2790 2808 1.912731 TGGAGCAGGTTAGGCACAATA 59.087 47.619 0.00 0.00 0.00 1.90
2820 2838 2.417107 CGCAATGGATAAAAGCTTGGCA 60.417 45.455 0.00 0.00 0.00 4.92
2831 2849 1.680735 GGACATTTGGCGCAATGGATA 59.319 47.619 20.59 0.00 0.00 2.59
2919 2938 9.667107 TTGTCAGGGTTTATAACTTAGATCAAG 57.333 33.333 0.00 0.00 40.38 3.02
2988 3007 2.352715 GCAGAAATTTACCCAGCACCAC 60.353 50.000 0.00 0.00 0.00 4.16
3222 3241 2.602878 TCGCCAAGTAAAGATCACGAC 58.397 47.619 0.00 0.00 0.00 4.34
3376 3395 4.535526 AACACCAAGAACAAGTGCTTTT 57.464 36.364 0.00 0.00 34.83 2.27
3380 3399 4.335594 AGAAGTAACACCAAGAACAAGTGC 59.664 41.667 0.00 0.00 34.83 4.40
3390 3409 8.375493 AGGACAATATAGAGAAGTAACACCAA 57.625 34.615 0.00 0.00 0.00 3.67
3488 3507 8.134895 CCACTGTCAATTTCTTAAGCAAAACTA 58.865 33.333 0.00 0.00 0.00 2.24
3508 3527 3.156293 TGCATATGTTTGCTTCCACTGT 58.844 40.909 4.29 0.00 43.18 3.55
3509 3528 3.428452 CCTGCATATGTTTGCTTCCACTG 60.428 47.826 4.29 0.00 43.18 3.66
3515 3534 2.756760 CTCCACCTGCATATGTTTGCTT 59.243 45.455 4.29 0.00 43.18 3.91
3533 3552 0.761802 CTTCCATGGTAGGAGCCTCC 59.238 60.000 12.58 1.26 39.25 4.30
3584 3603 0.398318 AACTTGCCAGTGAGGAGTCC 59.602 55.000 0.00 0.00 41.22 3.85
3587 3606 1.071385 AGACAACTTGCCAGTGAGGAG 59.929 52.381 0.00 0.00 41.22 3.69
3589 3608 1.876156 GAAGACAACTTGCCAGTGAGG 59.124 52.381 0.00 0.00 36.39 3.86
3594 3613 1.593196 TTCGGAAGACAACTTGCCAG 58.407 50.000 0.00 0.00 40.53 4.85
3606 3625 0.713883 CGATGTCGGTGTTTCGGAAG 59.286 55.000 0.00 0.00 35.37 3.46
3741 3760 4.511841 CCACCTCCTCCTATGATATCCACT 60.512 50.000 0.00 0.00 0.00 4.00
3809 3828 2.169832 TGATAGCCGCAATAGCCTTC 57.830 50.000 0.00 0.00 37.52 3.46
4008 4027 3.644966 GGAATGTCCTATGTGGGTCAA 57.355 47.619 0.00 0.00 36.20 3.18
4214 4373 2.742053 CCTCCAAACAGAACATACACCG 59.258 50.000 0.00 0.00 0.00 4.94
4278 4437 0.242286 CGGGCACATAGGATCTCGAG 59.758 60.000 5.93 5.93 0.00 4.04
4332 4491 4.785301 ACACCTCCATCATCGAATTTGAT 58.215 39.130 2.01 2.01 34.15 2.57
4366 4525 1.084370 GTCAGTGGAAAGATCGGCCG 61.084 60.000 22.12 22.12 0.00 6.13
4371 4530 2.555199 CATCCGGTCAGTGGAAAGATC 58.445 52.381 0.00 0.00 39.39 2.75
4398 4557 2.912771 TCCGAAGAGTGAAAAGCAACA 58.087 42.857 0.00 0.00 0.00 3.33
4424 4601 1.549170 ACGAAAATCGGTAGCCTGTCT 59.451 47.619 4.66 0.00 45.59 3.41
4489 4667 3.429492 TGGAAATTGCACAAGATAGGCA 58.571 40.909 0.00 0.00 35.41 4.75
4491 4669 5.297776 CCTACTGGAAATTGCACAAGATAGG 59.702 44.000 0.00 0.00 34.57 2.57
4528 4706 3.119849 ACACGGCAAAATGAGAGTAATGC 60.120 43.478 0.00 0.00 0.00 3.56
4582 4760 9.974980 CAAAGTGGTGGTTTTATACAATTTACT 57.025 29.630 0.00 0.00 29.69 2.24
4583 4761 9.968870 TCAAAGTGGTGGTTTTATACAATTTAC 57.031 29.630 0.00 0.00 29.69 2.01
4585 4763 9.541143 CTTCAAAGTGGTGGTTTTATACAATTT 57.459 29.630 0.00 0.00 30.66 1.82
4586 4764 8.147704 CCTTCAAAGTGGTGGTTTTATACAATT 58.852 33.333 0.00 0.00 0.00 2.32
4587 4765 7.666623 CCTTCAAAGTGGTGGTTTTATACAAT 58.333 34.615 0.00 0.00 0.00 2.71
4588 4766 6.461788 GCCTTCAAAGTGGTGGTTTTATACAA 60.462 38.462 0.00 0.00 0.00 2.41
4589 4767 5.010213 GCCTTCAAAGTGGTGGTTTTATACA 59.990 40.000 0.00 0.00 0.00 2.29
4590 4768 5.010213 TGCCTTCAAAGTGGTGGTTTTATAC 59.990 40.000 0.00 0.00 0.00 1.47
4591 4769 5.141182 TGCCTTCAAAGTGGTGGTTTTATA 58.859 37.500 0.00 0.00 0.00 0.98
4592 4770 3.964031 TGCCTTCAAAGTGGTGGTTTTAT 59.036 39.130 0.00 0.00 0.00 1.40
4593 4771 3.366396 TGCCTTCAAAGTGGTGGTTTTA 58.634 40.909 0.00 0.00 0.00 1.52
4594 4772 2.183679 TGCCTTCAAAGTGGTGGTTTT 58.816 42.857 0.00 0.00 0.00 2.43
4595 4773 1.859302 TGCCTTCAAAGTGGTGGTTT 58.141 45.000 0.00 0.00 0.00 3.27
4596 4774 1.756538 CTTGCCTTCAAAGTGGTGGTT 59.243 47.619 0.00 0.00 0.00 3.67
4597 4775 1.402787 CTTGCCTTCAAAGTGGTGGT 58.597 50.000 0.00 0.00 0.00 4.16
4598 4776 0.675633 CCTTGCCTTCAAAGTGGTGG 59.324 55.000 0.00 0.00 0.00 4.61
4599 4777 1.402787 ACCTTGCCTTCAAAGTGGTG 58.597 50.000 0.00 0.00 30.07 4.17
4600 4778 2.159179 AACCTTGCCTTCAAAGTGGT 57.841 45.000 0.00 0.00 31.83 4.16
4601 4779 2.168313 ACAAACCTTGCCTTCAAAGTGG 59.832 45.455 0.00 0.00 28.05 4.00
4602 4780 3.119173 TCACAAACCTTGCCTTCAAAGTG 60.119 43.478 0.00 0.00 28.05 3.16
4603 4781 3.096092 TCACAAACCTTGCCTTCAAAGT 58.904 40.909 0.00 0.00 0.00 2.66
4604 4782 3.799281 TCACAAACCTTGCCTTCAAAG 57.201 42.857 0.00 0.00 0.00 2.77
4605 4783 4.543590 TTTCACAAACCTTGCCTTCAAA 57.456 36.364 0.00 0.00 0.00 2.69
4606 4784 4.249661 GTTTTCACAAACCTTGCCTTCAA 58.750 39.130 0.00 0.00 36.96 2.69
4607 4785 3.855858 GTTTTCACAAACCTTGCCTTCA 58.144 40.909 0.00 0.00 36.96 3.02
4644 4822 5.644636 AGACACGGTGTTTTCTACAAAAGAA 59.355 36.000 15.94 0.00 42.62 2.52
4645 4823 5.180271 AGACACGGTGTTTTCTACAAAAGA 58.820 37.500 15.94 0.00 38.80 2.52
4646 4824 5.479716 AGACACGGTGTTTTCTACAAAAG 57.520 39.130 15.94 0.00 38.80 2.27
4647 4825 5.446206 CGAAGACACGGTGTTTTCTACAAAA 60.446 40.000 29.97 0.00 38.77 2.44
4648 4826 4.033129 CGAAGACACGGTGTTTTCTACAAA 59.967 41.667 29.97 0.00 38.77 2.83
4649 4827 3.552699 CGAAGACACGGTGTTTTCTACAA 59.447 43.478 29.97 0.00 38.77 2.41
4650 4828 3.117794 CGAAGACACGGTGTTTTCTACA 58.882 45.455 29.97 0.00 38.77 2.74
4651 4829 2.473984 CCGAAGACACGGTGTTTTCTAC 59.526 50.000 29.97 14.19 46.70 2.59
4652 4830 2.746269 CCGAAGACACGGTGTTTTCTA 58.254 47.619 29.97 0.00 46.70 2.10
4653 4831 1.578583 CCGAAGACACGGTGTTTTCT 58.421 50.000 29.97 16.14 46.70 2.52
4662 4840 2.969443 AAAAGATTGCCGAAGACACG 57.031 45.000 0.00 0.00 0.00 4.49
4663 4841 2.726241 GCAAAAAGATTGCCGAAGACAC 59.274 45.455 1.80 0.00 39.38 3.67
4664 4842 2.360483 TGCAAAAAGATTGCCGAAGACA 59.640 40.909 10.34 0.00 44.32 3.41
4665 4843 2.982470 CTGCAAAAAGATTGCCGAAGAC 59.018 45.455 10.34 0.00 44.32 3.01
4666 4844 2.884012 TCTGCAAAAAGATTGCCGAAGA 59.116 40.909 10.34 4.53 44.32 2.87
4667 4845 3.287312 TCTGCAAAAAGATTGCCGAAG 57.713 42.857 10.34 2.36 44.32 3.79
4668 4846 3.724508 TTCTGCAAAAAGATTGCCGAA 57.275 38.095 13.55 13.55 43.10 4.30
4669 4847 3.641648 CTTTCTGCAAAAAGATTGCCGA 58.358 40.909 6.68 6.91 44.32 5.54
4670 4848 2.156310 GCTTTCTGCAAAAAGATTGCCG 59.844 45.455 16.70 4.67 44.32 5.69
4671 4849 3.800929 GCTTTCTGCAAAAAGATTGCC 57.199 42.857 16.70 0.00 44.32 4.52
4683 4861 0.590732 CGCCGATCAATGCTTTCTGC 60.591 55.000 0.00 0.00 43.25 4.26
4684 4862 0.028505 CCGCCGATCAATGCTTTCTG 59.971 55.000 0.00 0.00 0.00 3.02
4685 4863 0.107703 TCCGCCGATCAATGCTTTCT 60.108 50.000 0.00 0.00 0.00 2.52
4686 4864 0.947244 ATCCGCCGATCAATGCTTTC 59.053 50.000 0.00 0.00 0.00 2.62
4687 4865 0.947244 GATCCGCCGATCAATGCTTT 59.053 50.000 9.80 0.00 43.87 3.51
4688 4866 2.621763 GATCCGCCGATCAATGCTT 58.378 52.632 9.80 0.00 43.87 3.91
4689 4867 4.368391 GATCCGCCGATCAATGCT 57.632 55.556 9.80 0.00 43.87 3.79
4695 4873 0.039617 CTGAGACTGATCCGCCGATC 60.040 60.000 7.97 7.97 44.57 3.69
4696 4874 0.753479 ACTGAGACTGATCCGCCGAT 60.753 55.000 0.00 0.00 0.00 4.18
4697 4875 0.965866 AACTGAGACTGATCCGCCGA 60.966 55.000 0.00 0.00 0.00 5.54
4698 4876 0.738975 TAACTGAGACTGATCCGCCG 59.261 55.000 0.00 0.00 0.00 6.46
4699 4877 2.815478 CTTAACTGAGACTGATCCGCC 58.185 52.381 0.00 0.00 0.00 6.13
4700 4878 2.159170 AGCTTAACTGAGACTGATCCGC 60.159 50.000 0.00 0.00 0.00 5.54
4701 4879 3.791973 AGCTTAACTGAGACTGATCCG 57.208 47.619 0.00 0.00 0.00 4.18
4702 4880 4.826556 ACAAGCTTAACTGAGACTGATCC 58.173 43.478 0.00 0.00 0.00 3.36
4703 4881 6.793492 AAACAAGCTTAACTGAGACTGATC 57.207 37.500 0.00 0.00 0.00 2.92
4704 4882 8.097038 TCATAAACAAGCTTAACTGAGACTGAT 58.903 33.333 0.00 0.00 0.00 2.90
4705 4883 7.385205 GTCATAAACAAGCTTAACTGAGACTGA 59.615 37.037 0.00 0.00 0.00 3.41
4706 4884 7.171508 TGTCATAAACAAGCTTAACTGAGACTG 59.828 37.037 0.00 0.00 34.03 3.51
4707 4885 7.217200 TGTCATAAACAAGCTTAACTGAGACT 58.783 34.615 0.00 0.00 34.03 3.24
4708 4886 7.360438 CCTGTCATAAACAAGCTTAACTGAGAC 60.360 40.741 0.00 5.04 37.45 3.36
4709 4887 6.650807 CCTGTCATAAACAAGCTTAACTGAGA 59.349 38.462 0.00 0.00 37.45 3.27
4710 4888 6.428159 ACCTGTCATAAACAAGCTTAACTGAG 59.572 38.462 0.00 0.00 37.45 3.35
4711 4889 6.204688 CACCTGTCATAAACAAGCTTAACTGA 59.795 38.462 0.00 0.00 37.45 3.41
4712 4890 6.373779 CACCTGTCATAAACAAGCTTAACTG 58.626 40.000 0.00 0.00 37.45 3.16
4713 4891 5.473504 CCACCTGTCATAAACAAGCTTAACT 59.526 40.000 0.00 0.00 37.45 2.24
4714 4892 5.335661 CCCACCTGTCATAAACAAGCTTAAC 60.336 44.000 0.00 0.00 37.45 2.01
4715 4893 4.764823 CCCACCTGTCATAAACAAGCTTAA 59.235 41.667 0.00 0.00 37.45 1.85
4716 4894 4.331968 CCCACCTGTCATAAACAAGCTTA 58.668 43.478 0.00 0.00 37.45 3.09
4717 4895 3.157087 CCCACCTGTCATAAACAAGCTT 58.843 45.455 0.00 0.00 37.45 3.74
4718 4896 2.555227 CCCCACCTGTCATAAACAAGCT 60.555 50.000 0.00 0.00 37.45 3.74
4719 4897 1.818674 CCCCACCTGTCATAAACAAGC 59.181 52.381 0.00 0.00 37.45 4.01
4720 4898 1.818674 GCCCCACCTGTCATAAACAAG 59.181 52.381 0.00 0.00 37.45 3.16
4721 4899 1.145945 TGCCCCACCTGTCATAAACAA 59.854 47.619 0.00 0.00 37.45 2.83
4722 4900 0.774276 TGCCCCACCTGTCATAAACA 59.226 50.000 0.00 0.00 36.18 2.83
4723 4901 1.173913 GTGCCCCACCTGTCATAAAC 58.826 55.000 0.00 0.00 0.00 2.01
4724 4902 1.072266 AGTGCCCCACCTGTCATAAA 58.928 50.000 0.00 0.00 34.49 1.40
4725 4903 1.072266 AAGTGCCCCACCTGTCATAA 58.928 50.000 0.00 0.00 34.49 1.90
4726 4904 1.072266 AAAGTGCCCCACCTGTCATA 58.928 50.000 0.00 0.00 34.49 2.15
4727 4905 0.188342 AAAAGTGCCCCACCTGTCAT 59.812 50.000 0.00 0.00 34.49 3.06
4728 4906 0.032615 AAAAAGTGCCCCACCTGTCA 60.033 50.000 0.00 0.00 34.49 3.58
4729 4907 2.820845 AAAAAGTGCCCCACCTGTC 58.179 52.632 0.00 0.00 34.49 3.51
4745 4923 1.355916 GGTGCCACGTACGCAAAAA 59.644 52.632 16.72 0.00 38.13 1.94
4746 4924 2.883468 CGGTGCCACGTACGCAAAA 61.883 57.895 16.72 0.00 38.13 2.44
4747 4925 3.339464 CGGTGCCACGTACGCAAA 61.339 61.111 16.72 0.00 38.13 3.68
4748 4926 4.588854 ACGGTGCCACGTACGCAA 62.589 61.111 16.72 0.00 46.58 4.85
4769 4947 3.695022 CTAACGGCGGTCGGGACAG 62.695 68.421 13.24 0.00 44.45 3.51
4770 4948 3.751246 CTAACGGCGGTCGGGACA 61.751 66.667 13.24 0.00 44.45 4.02
4771 4949 3.443045 TCTAACGGCGGTCGGGAC 61.443 66.667 13.24 0.00 44.45 4.46
4772 4950 3.443045 GTCTAACGGCGGTCGGGA 61.443 66.667 13.24 0.91 44.45 5.14
4773 4951 4.842091 CGTCTAACGGCGGTCGGG 62.842 72.222 13.24 0.00 44.45 5.14
4782 4960 0.858961 CCGTCTAACGCCGTCTAACG 60.859 60.000 10.14 10.14 40.91 3.18
4783 4961 1.136285 GCCGTCTAACGCCGTCTAAC 61.136 60.000 0.00 0.00 40.91 2.34
4784 4962 1.137404 GCCGTCTAACGCCGTCTAA 59.863 57.895 0.00 0.00 40.91 2.10
4785 4963 2.793946 GCCGTCTAACGCCGTCTA 59.206 61.111 0.00 0.00 40.91 2.59
4786 4964 4.471726 CGCCGTCTAACGCCGTCT 62.472 66.667 0.00 0.00 37.68 4.18
4801 4979 4.465512 CATGAAGGCACACGGCGC 62.466 66.667 6.90 0.00 46.16 6.53
4802 4980 4.465512 GCATGAAGGCACACGGCG 62.466 66.667 4.80 4.80 46.16 6.46
4803 4981 4.120331 GGCATGAAGGCACACGGC 62.120 66.667 0.00 0.00 43.51 5.68
4804 4982 3.443045 GGGCATGAAGGCACACGG 61.443 66.667 0.00 0.00 46.44 4.94
4809 4987 2.614969 AGAGGGGGCATGAAGGCA 60.615 61.111 0.00 0.00 46.44 4.75
4810 4988 2.123982 CAGAGGGGGCATGAAGGC 60.124 66.667 0.00 0.00 43.27 4.35
4811 4989 0.394899 GAACAGAGGGGGCATGAAGG 60.395 60.000 0.00 0.00 0.00 3.46
4812 4990 0.745845 CGAACAGAGGGGGCATGAAG 60.746 60.000 0.00 0.00 0.00 3.02
4813 4991 1.299648 CGAACAGAGGGGGCATGAA 59.700 57.895 0.00 0.00 0.00 2.57
4814 4992 1.488705 AACGAACAGAGGGGGCATGA 61.489 55.000 0.00 0.00 0.00 3.07
4815 4993 0.609131 AAACGAACAGAGGGGGCATG 60.609 55.000 0.00 0.00 0.00 4.06
4816 4994 0.609131 CAAACGAACAGAGGGGGCAT 60.609 55.000 0.00 0.00 0.00 4.40
4817 4995 1.228124 CAAACGAACAGAGGGGGCA 60.228 57.895 0.00 0.00 0.00 5.36
4818 4996 1.228154 ACAAACGAACAGAGGGGGC 60.228 57.895 0.00 0.00 0.00 5.80
4819 4997 0.605589 GGACAAACGAACAGAGGGGG 60.606 60.000 0.00 0.00 0.00 5.40
4820 4998 0.605589 GGGACAAACGAACAGAGGGG 60.606 60.000 0.00 0.00 0.00 4.79
4821 4999 0.605589 GGGGACAAACGAACAGAGGG 60.606 60.000 0.00 0.00 0.00 4.30
4822 5000 0.605589 GGGGGACAAACGAACAGAGG 60.606 60.000 0.00 0.00 0.00 3.69
4823 5001 0.396811 AGGGGGACAAACGAACAGAG 59.603 55.000 0.00 0.00 0.00 3.35
4824 5002 0.395312 GAGGGGGACAAACGAACAGA 59.605 55.000 0.00 0.00 0.00 3.41
4825 5003 0.949105 CGAGGGGGACAAACGAACAG 60.949 60.000 0.00 0.00 0.00 3.16
4826 5004 1.070105 CGAGGGGGACAAACGAACA 59.930 57.895 0.00 0.00 0.00 3.18
4827 5005 2.322830 GCGAGGGGGACAAACGAAC 61.323 63.158 0.00 0.00 0.00 3.95
4828 5006 2.031465 GCGAGGGGGACAAACGAA 59.969 61.111 0.00 0.00 0.00 3.85
4829 5007 4.011517 GGCGAGGGGGACAAACGA 62.012 66.667 0.00 0.00 0.00 3.85
4831 5009 4.735358 GGGGCGAGGGGGACAAAC 62.735 72.222 0.00 0.00 0.00 2.93
4857 5035 3.195698 GGAACATCGGGCAGACGC 61.196 66.667 0.00 0.00 37.44 5.19
4858 5036 2.511600 GGGAACATCGGGCAGACG 60.512 66.667 0.00 0.00 0.00 4.18
4859 5037 2.124695 GGGGAACATCGGGCAGAC 60.125 66.667 0.00 0.00 0.00 3.51
4860 5038 1.910580 GAAGGGGAACATCGGGCAGA 61.911 60.000 0.00 0.00 0.00 4.26
4861 5039 1.452108 GAAGGGGAACATCGGGCAG 60.452 63.158 0.00 0.00 0.00 4.85
4862 5040 1.497309 AAGAAGGGGAACATCGGGCA 61.497 55.000 0.00 0.00 0.00 5.36
4863 5041 0.748367 GAAGAAGGGGAACATCGGGC 60.748 60.000 0.00 0.00 0.00 6.13
4864 5042 0.107165 GGAAGAAGGGGAACATCGGG 60.107 60.000 0.00 0.00 0.00 5.14
4865 5043 0.107165 GGGAAGAAGGGGAACATCGG 60.107 60.000 0.00 0.00 0.00 4.18
4866 5044 0.107165 GGGGAAGAAGGGGAACATCG 60.107 60.000 0.00 0.00 0.00 3.84
4867 5045 0.259065 GGGGGAAGAAGGGGAACATC 59.741 60.000 0.00 0.00 0.00 3.06
4868 5046 2.410039 GGGGGAAGAAGGGGAACAT 58.590 57.895 0.00 0.00 0.00 2.71
4869 5047 3.931707 GGGGGAAGAAGGGGAACA 58.068 61.111 0.00 0.00 0.00 3.18
4883 5061 0.764752 AAAGCGGATAGGAGAGGGGG 60.765 60.000 0.00 0.00 0.00 5.40
4884 5062 0.682292 GAAAGCGGATAGGAGAGGGG 59.318 60.000 0.00 0.00 0.00 4.79
4885 5063 1.616374 GAGAAAGCGGATAGGAGAGGG 59.384 57.143 0.00 0.00 0.00 4.30
4886 5064 1.616374 GGAGAAAGCGGATAGGAGAGG 59.384 57.143 0.00 0.00 0.00 3.69
4887 5065 1.616374 GGGAGAAAGCGGATAGGAGAG 59.384 57.143 0.00 0.00 0.00 3.20
4888 5066 1.705873 GGGAGAAAGCGGATAGGAGA 58.294 55.000 0.00 0.00 0.00 3.71
4889 5067 0.682292 GGGGAGAAAGCGGATAGGAG 59.318 60.000 0.00 0.00 0.00 3.69
4890 5068 0.264955 AGGGGAGAAAGCGGATAGGA 59.735 55.000 0.00 0.00 0.00 2.94
4891 5069 0.682292 GAGGGGAGAAAGCGGATAGG 59.318 60.000 0.00 0.00 0.00 2.57
4892 5070 0.682292 GGAGGGGAGAAAGCGGATAG 59.318 60.000 0.00 0.00 0.00 2.08
4893 5071 0.264955 AGGAGGGGAGAAAGCGGATA 59.735 55.000 0.00 0.00 0.00 2.59
4894 5072 1.003573 AGGAGGGGAGAAAGCGGAT 59.996 57.895 0.00 0.00 0.00 4.18
4895 5073 1.686110 GAGGAGGGGAGAAAGCGGA 60.686 63.158 0.00 0.00 0.00 5.54
4896 5074 2.904131 GAGGAGGGGAGAAAGCGG 59.096 66.667 0.00 0.00 0.00 5.52
4897 5075 2.496817 CGAGGAGGGGAGAAAGCG 59.503 66.667 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.