Multiple sequence alignment - TraesCS2B01G153600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G153600 chr2B 100.000 3030 0 0 1 3030 121647712 121650741 0.000000e+00 5596
1 TraesCS2B01G153600 chr2B 93.365 211 14 0 2815 3025 121650428 121650638 2.270000e-81 313
2 TraesCS2B01G153600 chr2B 93.365 211 14 0 2717 2927 121650526 121650736 2.270000e-81 313
3 TraesCS2B01G153600 chr3B 91.541 2057 138 26 761 2791 25365964 25368010 0.000000e+00 2802
4 TraesCS2B01G153600 chr3B 89.384 1121 89 14 1188 2302 668021999 668020903 0.000000e+00 1384
5 TraesCS2B01G153600 chr4B 87.794 2425 238 45 625 3025 620349064 620351454 0.000000e+00 2785
6 TraesCS2B01G153600 chr4B 88.744 1839 169 28 1191 3025 620418934 620420738 0.000000e+00 2215
7 TraesCS2B01G153600 chr4B 88.428 1037 84 15 625 1635 630535263 630534237 0.000000e+00 1218
8 TraesCS2B01G153600 chr4B 85.814 430 55 4 2601 3025 620420262 620420690 4.610000e-123 451
9 TraesCS2B01G153600 chr4B 85.349 430 57 4 2601 3025 620350978 620351406 9.970000e-120 440
10 TraesCS2B01G153600 chr4B 88.364 275 32 0 2740 3014 107796720 107796446 6.260000e-87 331
11 TraesCS2B01G153600 chr4B 81.772 395 59 11 2635 3028 620420262 620420644 4.870000e-83 318
12 TraesCS2B01G153600 chr4B 90.551 127 10 2 2717 2843 620420627 620420751 1.870000e-37 167
13 TraesCS2B01G153600 chr6D 87.372 2336 206 46 625 2949 349082444 349080187 0.000000e+00 2597
14 TraesCS2B01G153600 chr6D 83.841 427 49 10 2572 2998 349080593 349080187 3.660000e-104 388
15 TraesCS2B01G153600 chr6D 89.558 249 26 0 2764 3012 349079720 349079472 1.750000e-82 316
16 TraesCS2B01G153600 chr7D 92.690 1026 48 9 626 1632 587889145 587890162 0.000000e+00 1454
17 TraesCS2B01G153600 chr7D 88.600 886 64 17 1653 2507 587890131 587891010 0.000000e+00 1042
18 TraesCS2B01G153600 chr5D 93.908 952 40 8 1653 2592 2089558 2088613 0.000000e+00 1421
19 TraesCS2B01G153600 chr5D 91.527 1015 60 13 624 1635 454018338 454017347 0.000000e+00 1375
20 TraesCS2B01G153600 chr5D 91.402 977 66 9 623 1597 2108365 2107405 0.000000e+00 1323
21 TraesCS2B01G153600 chr5D 87.627 889 76 15 1653 2510 454017381 454016496 0.000000e+00 1002
22 TraesCS2B01G153600 chr4D 84.089 1389 187 24 1653 3028 431024124 431022757 0.000000e+00 1310
23 TraesCS2B01G153600 chr7A 87.207 938 82 15 720 1637 650568070 650567151 0.000000e+00 1033
24 TraesCS2B01G153600 chr4A 88.360 756 64 14 624 1368 577889448 577888706 0.000000e+00 887
25 TraesCS2B01G153600 chr4A 87.270 762 68 18 621 1368 14838481 14839227 0.000000e+00 843
26 TraesCS2B01G153600 chr3A 86.912 787 58 20 613 1367 648161104 648161877 0.000000e+00 841
27 TraesCS2B01G153600 chr6A 86.340 776 63 20 625 1368 464979208 464978444 0.000000e+00 806
28 TraesCS2B01G153600 chr5B 86.355 535 51 11 623 1152 403752174 403752691 5.670000e-157 564
29 TraesCS2B01G153600 chr2D 88.148 270 23 5 1 268 78526375 78526637 2.270000e-81 313
30 TraesCS2B01G153600 chr2D 92.857 196 11 2 430 624 78526867 78527060 6.400000e-72 281
31 TraesCS2B01G153600 chr2A 87.454 271 24 5 1 268 78808125 78808388 1.360000e-78 303


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G153600 chr2B 121647712 121650741 3029 False 2074.000000 5596 95.576667 1 3030 3 chr2B.!!$F1 3029
1 TraesCS2B01G153600 chr3B 25365964 25368010 2046 False 2802.000000 2802 91.541000 761 2791 1 chr3B.!!$F1 2030
2 TraesCS2B01G153600 chr3B 668020903 668021999 1096 True 1384.000000 1384 89.384000 1188 2302 1 chr3B.!!$R1 1114
3 TraesCS2B01G153600 chr4B 620349064 620351454 2390 False 1612.500000 2785 86.571500 625 3025 2 chr4B.!!$F1 2400
4 TraesCS2B01G153600 chr4B 630534237 630535263 1026 True 1218.000000 1218 88.428000 625 1635 1 chr4B.!!$R2 1010
5 TraesCS2B01G153600 chr4B 620418934 620420751 1817 False 787.750000 2215 86.720250 1191 3028 4 chr4B.!!$F2 1837
6 TraesCS2B01G153600 chr6D 349079472 349082444 2972 True 1100.333333 2597 86.923667 625 3012 3 chr6D.!!$R1 2387
7 TraesCS2B01G153600 chr7D 587889145 587891010 1865 False 1248.000000 1454 90.645000 626 2507 2 chr7D.!!$F1 1881
8 TraesCS2B01G153600 chr5D 2088613 2089558 945 True 1421.000000 1421 93.908000 1653 2592 1 chr5D.!!$R1 939
9 TraesCS2B01G153600 chr5D 2107405 2108365 960 True 1323.000000 1323 91.402000 623 1597 1 chr5D.!!$R2 974
10 TraesCS2B01G153600 chr5D 454016496 454018338 1842 True 1188.500000 1375 89.577000 624 2510 2 chr5D.!!$R3 1886
11 TraesCS2B01G153600 chr4D 431022757 431024124 1367 True 1310.000000 1310 84.089000 1653 3028 1 chr4D.!!$R1 1375
12 TraesCS2B01G153600 chr7A 650567151 650568070 919 True 1033.000000 1033 87.207000 720 1637 1 chr7A.!!$R1 917
13 TraesCS2B01G153600 chr4A 577888706 577889448 742 True 887.000000 887 88.360000 624 1368 1 chr4A.!!$R1 744
14 TraesCS2B01G153600 chr4A 14838481 14839227 746 False 843.000000 843 87.270000 621 1368 1 chr4A.!!$F1 747
15 TraesCS2B01G153600 chr3A 648161104 648161877 773 False 841.000000 841 86.912000 613 1367 1 chr3A.!!$F1 754
16 TraesCS2B01G153600 chr6A 464978444 464979208 764 True 806.000000 806 86.340000 625 1368 1 chr6A.!!$R1 743
17 TraesCS2B01G153600 chr5B 403752174 403752691 517 False 564.000000 564 86.355000 623 1152 1 chr5B.!!$F1 529
18 TraesCS2B01G153600 chr2D 78526375 78527060 685 False 297.000000 313 90.502500 1 624 2 chr2D.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 444 0.109532 TCAACCGGAATTCTGCACCA 59.890 50.0 9.46 0.0 0.0 4.17 F
442 445 0.240945 CAACCGGAATTCTGCACCAC 59.759 55.0 9.46 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1600 0.263172 TGCCAGACCAAGGGGAAAAA 59.737 50.0 0.00 0.0 38.05 1.94 R
2275 2504 0.400525 TGGCCTTGATCCCCTCTAGG 60.401 60.0 3.32 0.0 46.25 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.915293 ATACAAGAAATAACCACGACAATGA 57.085 32.000 0.00 0.00 0.00 2.57
35 36 5.997385 AGAAATAACCACGACAATGACAAC 58.003 37.500 0.00 0.00 0.00 3.32
39 40 7.441890 AATAACCACGACAATGACAACAATA 57.558 32.000 0.00 0.00 0.00 1.90
93 94 4.201208 CAATACTGCATTAGGACTTGCG 57.799 45.455 0.00 0.00 41.80 4.85
116 117 2.157421 GCTGAAGAGCCTTGACACG 58.843 57.895 0.00 0.00 39.57 4.49
117 118 1.294659 GCTGAAGAGCCTTGACACGG 61.295 60.000 0.00 0.00 39.57 4.94
137 140 0.537143 TAGCAAAGGGTGTGCCACTG 60.537 55.000 0.00 0.00 43.27 3.66
140 143 1.110442 CAAAGGGTGTGCCACTGAAA 58.890 50.000 0.00 0.00 34.40 2.69
142 145 0.468029 AAGGGTGTGCCACTGAAAGG 60.468 55.000 0.00 0.00 39.30 3.11
143 146 1.150536 GGGTGTGCCACTGAAAGGA 59.849 57.895 0.00 0.00 39.30 3.36
149 152 1.882623 GTGCCACTGAAAGGAGGAAAG 59.117 52.381 0.00 0.00 39.30 2.62
150 153 1.774254 TGCCACTGAAAGGAGGAAAGA 59.226 47.619 0.00 0.00 39.30 2.52
173 176 3.743396 GCGTATGCTTCAAGGATCTTAGG 59.257 47.826 0.00 0.00 38.39 2.69
190 193 4.772624 TCTTAGGCTGTACTCACACATTCT 59.227 41.667 0.00 0.00 0.00 2.40
191 194 3.601443 AGGCTGTACTCACACATTCTC 57.399 47.619 0.00 0.00 0.00 2.87
192 195 3.169099 AGGCTGTACTCACACATTCTCT 58.831 45.455 0.00 0.00 0.00 3.10
193 196 3.580458 AGGCTGTACTCACACATTCTCTT 59.420 43.478 0.00 0.00 0.00 2.85
194 197 4.772624 AGGCTGTACTCACACATTCTCTTA 59.227 41.667 0.00 0.00 0.00 2.10
195 198 5.423610 AGGCTGTACTCACACATTCTCTTAT 59.576 40.000 0.00 0.00 0.00 1.73
268 271 6.605471 TGGTTGTACTCTCACATTCTGTAT 57.395 37.500 0.00 0.00 0.00 2.29
269 272 7.004555 TGGTTGTACTCTCACATTCTGTATT 57.995 36.000 0.00 0.00 0.00 1.89
270 273 6.873605 TGGTTGTACTCTCACATTCTGTATTG 59.126 38.462 0.00 0.00 0.00 1.90
271 274 6.183360 GGTTGTACTCTCACATTCTGTATTGC 60.183 42.308 0.00 0.00 0.00 3.56
272 275 5.419542 TGTACTCTCACATTCTGTATTGCC 58.580 41.667 0.00 0.00 0.00 4.52
273 276 4.833478 ACTCTCACATTCTGTATTGCCT 57.167 40.909 0.00 0.00 0.00 4.75
274 277 5.171339 ACTCTCACATTCTGTATTGCCTT 57.829 39.130 0.00 0.00 0.00 4.35
275 278 4.940046 ACTCTCACATTCTGTATTGCCTTG 59.060 41.667 0.00 0.00 0.00 3.61
276 279 4.264253 TCTCACATTCTGTATTGCCTTGG 58.736 43.478 0.00 0.00 0.00 3.61
277 280 4.019411 TCTCACATTCTGTATTGCCTTGGA 60.019 41.667 0.00 0.00 0.00 3.53
278 281 4.264253 TCACATTCTGTATTGCCTTGGAG 58.736 43.478 0.00 0.00 0.00 3.86
279 282 4.012374 CACATTCTGTATTGCCTTGGAGT 58.988 43.478 0.00 0.00 0.00 3.85
280 283 5.045942 TCACATTCTGTATTGCCTTGGAGTA 60.046 40.000 0.00 0.00 0.00 2.59
281 284 5.295292 CACATTCTGTATTGCCTTGGAGTAG 59.705 44.000 0.00 0.00 0.00 2.57
282 285 4.487714 TTCTGTATTGCCTTGGAGTAGG 57.512 45.455 0.00 0.00 38.40 3.18
283 286 3.450904 TCTGTATTGCCTTGGAGTAGGT 58.549 45.455 0.00 0.00 37.63 3.08
284 287 4.616553 TCTGTATTGCCTTGGAGTAGGTA 58.383 43.478 0.00 0.00 37.63 3.08
285 288 5.027460 TCTGTATTGCCTTGGAGTAGGTAA 58.973 41.667 0.00 0.00 42.84 2.85
286 289 5.128827 TCTGTATTGCCTTGGAGTAGGTAAG 59.871 44.000 0.00 0.00 42.11 2.34
287 290 5.027460 TGTATTGCCTTGGAGTAGGTAAGA 58.973 41.667 0.00 0.00 42.11 2.10
288 291 5.665812 TGTATTGCCTTGGAGTAGGTAAGAT 59.334 40.000 0.00 0.00 42.11 2.40
289 292 4.487714 TTGCCTTGGAGTAGGTAAGATG 57.512 45.455 0.00 0.00 35.35 2.90
290 293 2.771943 TGCCTTGGAGTAGGTAAGATGG 59.228 50.000 0.00 0.00 37.63 3.51
291 294 3.039011 GCCTTGGAGTAGGTAAGATGGA 58.961 50.000 0.00 0.00 37.63 3.41
292 295 3.648545 GCCTTGGAGTAGGTAAGATGGAT 59.351 47.826 0.00 0.00 37.63 3.41
293 296 4.503991 GCCTTGGAGTAGGTAAGATGGATG 60.504 50.000 0.00 0.00 37.63 3.51
294 297 4.503991 CCTTGGAGTAGGTAAGATGGATGC 60.504 50.000 0.00 0.00 0.00 3.91
295 298 3.653164 TGGAGTAGGTAAGATGGATGCA 58.347 45.455 0.00 0.00 0.00 3.96
296 299 4.234550 TGGAGTAGGTAAGATGGATGCAT 58.765 43.478 0.00 0.00 0.00 3.96
297 300 4.040829 TGGAGTAGGTAAGATGGATGCATG 59.959 45.833 2.46 0.00 0.00 4.06
298 301 4.284490 GGAGTAGGTAAGATGGATGCATGA 59.716 45.833 2.46 0.00 0.00 3.07
299 302 5.046014 GGAGTAGGTAAGATGGATGCATGAT 60.046 44.000 2.46 0.00 0.00 2.45
300 303 6.155221 GGAGTAGGTAAGATGGATGCATGATA 59.845 42.308 2.46 0.00 0.00 2.15
301 304 7.147585 GGAGTAGGTAAGATGGATGCATGATAT 60.148 40.741 2.46 0.00 0.00 1.63
302 305 8.844865 AGTAGGTAAGATGGATGCATGATATA 57.155 34.615 2.46 0.00 0.00 0.86
316 319 4.151335 GCATGATATAGGCAGTTTCGTCTG 59.849 45.833 0.00 0.00 35.80 3.51
320 323 0.388134 TAGGCAGTTTCGTCTGACGC 60.388 55.000 24.37 11.36 46.98 5.19
336 339 0.461339 ACGCCGTGAAACTTGTCTGT 60.461 50.000 0.00 0.00 31.75 3.41
340 343 2.092211 GCCGTGAAACTTGTCTGTATCG 59.908 50.000 0.00 0.00 31.75 2.92
341 344 3.571571 CCGTGAAACTTGTCTGTATCGA 58.428 45.455 0.00 0.00 31.75 3.59
342 345 3.364023 CCGTGAAACTTGTCTGTATCGAC 59.636 47.826 0.00 0.00 31.75 4.20
343 346 4.227538 CGTGAAACTTGTCTGTATCGACT 58.772 43.478 0.00 0.00 32.37 4.18
344 347 4.088638 CGTGAAACTTGTCTGTATCGACTG 59.911 45.833 0.00 0.00 32.37 3.51
358 361 7.555195 TCTGTATCGACTGAAATACACCTCTTA 59.445 37.037 0.00 0.00 34.33 2.10
374 377 8.209917 ACACCTCTTATAATAAAGGAAAAGCG 57.790 34.615 13.03 0.00 32.99 4.68
376 379 6.826741 ACCTCTTATAATAAAGGAAAAGCGCA 59.173 34.615 11.47 0.00 32.99 6.09
377 380 7.502561 ACCTCTTATAATAAAGGAAAAGCGCAT 59.497 33.333 11.47 0.00 32.99 4.73
378 381 7.805071 CCTCTTATAATAAAGGAAAAGCGCATG 59.195 37.037 11.47 0.00 0.00 4.06
379 382 7.648142 TCTTATAATAAAGGAAAAGCGCATGG 58.352 34.615 11.47 0.00 0.00 3.66
390 393 3.727419 GCGCATGGCAGAAAAGATT 57.273 47.368 0.30 0.00 42.87 2.40
391 394 2.849880 GCGCATGGCAGAAAAGATTA 57.150 45.000 0.30 0.00 42.87 1.75
392 395 3.360249 GCGCATGGCAGAAAAGATTAT 57.640 42.857 0.30 0.00 42.87 1.28
393 396 4.488126 GCGCATGGCAGAAAAGATTATA 57.512 40.909 0.30 0.00 42.87 0.98
394 397 5.051891 GCGCATGGCAGAAAAGATTATAT 57.948 39.130 0.30 0.00 42.87 0.86
395 398 6.182039 GCGCATGGCAGAAAAGATTATATA 57.818 37.500 0.30 0.00 42.87 0.86
396 399 6.789262 GCGCATGGCAGAAAAGATTATATAT 58.211 36.000 0.30 0.00 42.87 0.86
397 400 7.919690 GCGCATGGCAGAAAAGATTATATATA 58.080 34.615 0.30 0.00 42.87 0.86
398 401 7.852945 GCGCATGGCAGAAAAGATTATATATAC 59.147 37.037 0.30 0.00 42.87 1.47
399 402 8.058328 CGCATGGCAGAAAAGATTATATATACG 58.942 37.037 0.00 0.00 0.00 3.06
400 403 8.338259 GCATGGCAGAAAAGATTATATATACGG 58.662 37.037 0.00 0.00 0.00 4.02
401 404 9.383519 CATGGCAGAAAAGATTATATATACGGT 57.616 33.333 0.00 0.00 0.00 4.83
402 405 8.771920 TGGCAGAAAAGATTATATATACGGTG 57.228 34.615 0.00 0.00 0.00 4.94
403 406 8.590204 TGGCAGAAAAGATTATATATACGGTGA 58.410 33.333 0.00 0.00 0.00 4.02
404 407 9.088512 GGCAGAAAAGATTATATATACGGTGAG 57.911 37.037 0.00 0.00 0.00 3.51
405 408 8.596380 GCAGAAAAGATTATATATACGGTGAGC 58.404 37.037 0.00 0.00 0.00 4.26
422 425 1.078848 GCGGTCCTCTGCTCAACAT 60.079 57.895 0.00 0.00 42.20 2.71
427 430 2.079925 GTCCTCTGCTCAACATCAACC 58.920 52.381 0.00 0.00 0.00 3.77
428 431 1.081892 CCTCTGCTCAACATCAACCG 58.918 55.000 0.00 0.00 0.00 4.44
429 432 1.081892 CTCTGCTCAACATCAACCGG 58.918 55.000 0.00 0.00 0.00 5.28
430 433 0.684535 TCTGCTCAACATCAACCGGA 59.315 50.000 9.46 0.00 0.00 5.14
431 434 1.071542 TCTGCTCAACATCAACCGGAA 59.928 47.619 9.46 0.00 0.00 4.30
432 435 2.086869 CTGCTCAACATCAACCGGAAT 58.913 47.619 9.46 0.00 0.00 3.01
433 436 2.489329 CTGCTCAACATCAACCGGAATT 59.511 45.455 9.46 0.00 0.00 2.17
434 437 2.487762 TGCTCAACATCAACCGGAATTC 59.512 45.455 9.46 0.00 0.00 2.17
435 438 2.749621 GCTCAACATCAACCGGAATTCT 59.250 45.455 9.46 0.00 0.00 2.40
436 439 3.426695 GCTCAACATCAACCGGAATTCTG 60.427 47.826 9.46 7.35 0.00 3.02
437 440 2.487762 TCAACATCAACCGGAATTCTGC 59.512 45.455 9.46 0.00 0.00 4.26
438 441 2.198827 ACATCAACCGGAATTCTGCA 57.801 45.000 9.46 0.00 0.00 4.41
439 442 1.812571 ACATCAACCGGAATTCTGCAC 59.187 47.619 9.46 0.00 0.00 4.57
440 443 1.133025 CATCAACCGGAATTCTGCACC 59.867 52.381 9.46 0.00 0.00 5.01
441 444 0.109532 TCAACCGGAATTCTGCACCA 59.890 50.000 9.46 0.00 0.00 4.17
442 445 0.240945 CAACCGGAATTCTGCACCAC 59.759 55.000 9.46 0.00 0.00 4.16
443 446 1.234615 AACCGGAATTCTGCACCACG 61.235 55.000 9.46 0.02 0.00 4.94
444 447 2.480555 CGGAATTCTGCACCACGC 59.519 61.111 5.23 0.00 42.89 5.34
445 448 2.480555 GGAATTCTGCACCACGCG 59.519 61.111 3.53 3.53 46.97 6.01
446 449 2.325082 GGAATTCTGCACCACGCGT 61.325 57.895 5.58 5.58 46.97 6.01
447 450 1.154413 GAATTCTGCACCACGCGTG 60.154 57.895 31.77 31.77 46.97 5.34
475 478 4.286297 CCAGTCCTGGTTATCTTGAACA 57.714 45.455 5.11 0.00 45.53 3.18
476 479 4.651778 CCAGTCCTGGTTATCTTGAACAA 58.348 43.478 5.11 0.00 45.53 2.83
477 480 4.455877 CCAGTCCTGGTTATCTTGAACAAC 59.544 45.833 5.11 0.00 45.53 3.32
478 481 4.455877 CAGTCCTGGTTATCTTGAACAACC 59.544 45.833 9.31 9.31 41.75 3.77
482 485 2.811431 TGGTTATCTTGAACAACCAGCG 59.189 45.455 13.00 0.00 45.15 5.18
483 486 3.071479 GGTTATCTTGAACAACCAGCGA 58.929 45.455 10.66 0.00 41.17 4.93
484 487 3.689649 GGTTATCTTGAACAACCAGCGAT 59.310 43.478 10.66 0.00 41.17 4.58
485 488 4.201822 GGTTATCTTGAACAACCAGCGATC 60.202 45.833 10.66 0.00 41.17 3.69
486 489 1.808411 TCTTGAACAACCAGCGATCC 58.192 50.000 0.00 0.00 0.00 3.36
487 490 1.347707 TCTTGAACAACCAGCGATCCT 59.652 47.619 0.00 0.00 0.00 3.24
488 491 1.466167 CTTGAACAACCAGCGATCCTG 59.534 52.381 4.67 4.67 41.41 3.86
498 501 2.358957 CAGCGATCCTGGAAAATCACA 58.641 47.619 0.00 0.00 37.93 3.58
499 502 2.749076 CAGCGATCCTGGAAAATCACAA 59.251 45.455 0.00 0.00 37.93 3.33
500 503 3.191162 CAGCGATCCTGGAAAATCACAAA 59.809 43.478 0.00 0.00 37.93 2.83
501 504 3.191371 AGCGATCCTGGAAAATCACAAAC 59.809 43.478 0.00 0.00 0.00 2.93
502 505 3.057596 GCGATCCTGGAAAATCACAAACA 60.058 43.478 0.00 0.00 0.00 2.83
503 506 4.475944 CGATCCTGGAAAATCACAAACAC 58.524 43.478 0.00 0.00 0.00 3.32
504 507 4.023279 CGATCCTGGAAAATCACAAACACA 60.023 41.667 0.00 0.00 0.00 3.72
505 508 5.335897 CGATCCTGGAAAATCACAAACACAT 60.336 40.000 0.00 0.00 0.00 3.21
506 509 5.452078 TCCTGGAAAATCACAAACACATC 57.548 39.130 0.00 0.00 0.00 3.06
507 510 5.139727 TCCTGGAAAATCACAAACACATCT 58.860 37.500 0.00 0.00 0.00 2.90
508 511 5.241506 TCCTGGAAAATCACAAACACATCTC 59.758 40.000 0.00 0.00 0.00 2.75
509 512 5.452078 TGGAAAATCACAAACACATCTCC 57.548 39.130 0.00 0.00 0.00 3.71
510 513 4.280677 TGGAAAATCACAAACACATCTCCC 59.719 41.667 0.00 0.00 0.00 4.30
511 514 4.524328 GGAAAATCACAAACACATCTCCCT 59.476 41.667 0.00 0.00 0.00 4.20
512 515 5.335976 GGAAAATCACAAACACATCTCCCTC 60.336 44.000 0.00 0.00 0.00 4.30
513 516 4.371624 AATCACAAACACATCTCCCTCA 57.628 40.909 0.00 0.00 0.00 3.86
514 517 4.581309 ATCACAAACACATCTCCCTCAT 57.419 40.909 0.00 0.00 0.00 2.90
515 518 5.698741 ATCACAAACACATCTCCCTCATA 57.301 39.130 0.00 0.00 0.00 2.15
516 519 5.698741 TCACAAACACATCTCCCTCATAT 57.301 39.130 0.00 0.00 0.00 1.78
517 520 6.806668 TCACAAACACATCTCCCTCATATA 57.193 37.500 0.00 0.00 0.00 0.86
518 521 6.582636 TCACAAACACATCTCCCTCATATAC 58.417 40.000 0.00 0.00 0.00 1.47
519 522 6.156083 TCACAAACACATCTCCCTCATATACA 59.844 38.462 0.00 0.00 0.00 2.29
520 523 6.823182 CACAAACACATCTCCCTCATATACAA 59.177 38.462 0.00 0.00 0.00 2.41
521 524 7.500227 CACAAACACATCTCCCTCATATACAAT 59.500 37.037 0.00 0.00 0.00 2.71
522 525 7.716998 ACAAACACATCTCCCTCATATACAATC 59.283 37.037 0.00 0.00 0.00 2.67
523 526 7.379059 AACACATCTCCCTCATATACAATCA 57.621 36.000 0.00 0.00 0.00 2.57
524 527 7.565190 ACACATCTCCCTCATATACAATCAT 57.435 36.000 0.00 0.00 0.00 2.45
525 528 7.392418 ACACATCTCCCTCATATACAATCATG 58.608 38.462 0.00 0.00 0.00 3.07
526 529 6.315642 CACATCTCCCTCATATACAATCATGC 59.684 42.308 0.00 0.00 0.00 4.06
527 530 6.215023 ACATCTCCCTCATATACAATCATGCT 59.785 38.462 0.00 0.00 0.00 3.79
528 531 6.291648 TCTCCCTCATATACAATCATGCTC 57.708 41.667 0.00 0.00 0.00 4.26
529 532 5.781818 TCTCCCTCATATACAATCATGCTCA 59.218 40.000 0.00 0.00 0.00 4.26
530 533 6.046290 TCCCTCATATACAATCATGCTCAG 57.954 41.667 0.00 0.00 0.00 3.35
531 534 4.634883 CCCTCATATACAATCATGCTCAGC 59.365 45.833 0.00 0.00 0.00 4.26
532 535 4.329256 CCTCATATACAATCATGCTCAGCG 59.671 45.833 0.00 0.00 0.00 5.18
533 536 3.681417 TCATATACAATCATGCTCAGCGC 59.319 43.478 0.00 0.00 39.77 5.92
542 545 2.558313 GCTCAGCGCAACTCCAAC 59.442 61.111 11.47 0.00 38.92 3.77
543 546 1.963338 GCTCAGCGCAACTCCAACT 60.963 57.895 11.47 0.00 38.92 3.16
544 547 1.864862 CTCAGCGCAACTCCAACTG 59.135 57.895 11.47 0.00 0.00 3.16
545 548 1.572085 CTCAGCGCAACTCCAACTGG 61.572 60.000 11.47 0.00 0.00 4.00
546 549 2.980233 AGCGCAACTCCAACTGGC 60.980 61.111 11.47 0.00 34.44 4.85
547 550 3.286751 GCGCAACTCCAACTGGCA 61.287 61.111 0.30 0.00 34.44 4.92
548 551 2.629656 GCGCAACTCCAACTGGCAT 61.630 57.895 0.30 0.00 34.44 4.40
549 552 1.210931 CGCAACTCCAACTGGCATG 59.789 57.895 0.00 0.00 34.44 4.06
550 553 1.518056 CGCAACTCCAACTGGCATGT 61.518 55.000 0.00 0.00 34.44 3.21
551 554 1.533625 GCAACTCCAACTGGCATGTA 58.466 50.000 0.00 0.00 34.44 2.29
552 555 1.885887 GCAACTCCAACTGGCATGTAA 59.114 47.619 0.00 0.00 34.44 2.41
553 556 2.351738 GCAACTCCAACTGGCATGTAAC 60.352 50.000 0.00 0.00 34.44 2.50
554 557 2.200373 ACTCCAACTGGCATGTAACC 57.800 50.000 0.00 0.00 34.44 2.85
555 558 1.423541 ACTCCAACTGGCATGTAACCA 59.576 47.619 0.00 0.00 35.40 3.67
556 559 2.158534 ACTCCAACTGGCATGTAACCAA 60.159 45.455 0.00 0.00 36.56 3.67
557 560 2.890311 CTCCAACTGGCATGTAACCAAA 59.110 45.455 0.00 0.00 36.56 3.28
558 561 2.625790 TCCAACTGGCATGTAACCAAAC 59.374 45.455 0.00 0.00 36.56 2.93
559 562 2.288763 CCAACTGGCATGTAACCAAACC 60.289 50.000 0.00 0.00 36.56 3.27
560 563 2.363680 CAACTGGCATGTAACCAAACCA 59.636 45.455 0.00 0.00 36.56 3.67
561 564 2.672098 ACTGGCATGTAACCAAACCAA 58.328 42.857 0.00 0.00 36.56 3.67
562 565 3.034635 ACTGGCATGTAACCAAACCAAA 58.965 40.909 0.00 0.00 36.56 3.28
563 566 3.181470 ACTGGCATGTAACCAAACCAAAC 60.181 43.478 0.00 0.00 36.56 2.93
564 567 2.103263 TGGCATGTAACCAAACCAAACC 59.897 45.455 0.00 0.00 33.12 3.27
565 568 2.103263 GGCATGTAACCAAACCAAACCA 59.897 45.455 0.00 0.00 0.00 3.67
566 569 3.244387 GGCATGTAACCAAACCAAACCAT 60.244 43.478 0.00 0.00 0.00 3.55
567 570 4.384940 GCATGTAACCAAACCAAACCATT 58.615 39.130 0.00 0.00 0.00 3.16
568 571 4.213059 GCATGTAACCAAACCAAACCATTG 59.787 41.667 0.00 0.00 36.25 2.82
569 572 5.605534 CATGTAACCAAACCAAACCATTGA 58.394 37.500 0.00 0.00 38.94 2.57
570 573 5.677319 TGTAACCAAACCAAACCATTGAA 57.323 34.783 0.00 0.00 38.94 2.69
571 574 5.420409 TGTAACCAAACCAAACCATTGAAC 58.580 37.500 0.00 0.00 38.94 3.18
572 575 4.559862 AACCAAACCAAACCATTGAACA 57.440 36.364 0.00 0.00 38.94 3.18
573 576 4.559862 ACCAAACCAAACCATTGAACAA 57.440 36.364 0.00 0.00 38.94 2.83
574 577 4.257731 ACCAAACCAAACCATTGAACAAC 58.742 39.130 0.00 0.00 38.94 3.32
575 578 3.625313 CCAAACCAAACCATTGAACAACC 59.375 43.478 0.00 0.00 38.94 3.77
576 579 4.256920 CAAACCAAACCATTGAACAACCA 58.743 39.130 0.00 0.00 38.94 3.67
577 580 4.559862 AACCAAACCATTGAACAACCAA 57.440 36.364 0.00 0.00 38.94 3.67
578 581 3.867857 ACCAAACCATTGAACAACCAAC 58.132 40.909 0.00 0.00 38.94 3.77
579 582 3.261897 ACCAAACCATTGAACAACCAACA 59.738 39.130 0.00 0.00 38.94 3.33
580 583 3.620821 CCAAACCATTGAACAACCAACAC 59.379 43.478 0.00 0.00 38.94 3.32
581 584 4.248859 CAAACCATTGAACAACCAACACA 58.751 39.130 0.00 0.00 38.94 3.72
582 585 4.751767 AACCATTGAACAACCAACACAT 57.248 36.364 0.00 0.00 0.00 3.21
583 586 4.057406 ACCATTGAACAACCAACACATG 57.943 40.909 0.00 0.00 0.00 3.21
584 587 3.703556 ACCATTGAACAACCAACACATGA 59.296 39.130 0.00 0.00 0.00 3.07
585 588 4.050553 CCATTGAACAACCAACACATGAC 58.949 43.478 0.00 0.00 0.00 3.06
586 589 3.791973 TTGAACAACCAACACATGACC 57.208 42.857 0.00 0.00 0.00 4.02
587 590 2.028130 TGAACAACCAACACATGACCC 58.972 47.619 0.00 0.00 0.00 4.46
588 591 2.306847 GAACAACCAACACATGACCCT 58.693 47.619 0.00 0.00 0.00 4.34
589 592 3.117851 TGAACAACCAACACATGACCCTA 60.118 43.478 0.00 0.00 0.00 3.53
590 593 3.140325 ACAACCAACACATGACCCTAG 57.860 47.619 0.00 0.00 0.00 3.02
591 594 2.224769 ACAACCAACACATGACCCTAGG 60.225 50.000 0.06 0.06 0.00 3.02
592 595 0.991920 ACCAACACATGACCCTAGGG 59.008 55.000 27.36 27.36 42.03 3.53
608 611 6.445451 CCCTAGGGTAGTAGTAGTCATACA 57.555 45.833 20.88 0.00 34.07 2.29
609 612 6.237154 CCCTAGGGTAGTAGTAGTCATACAC 58.763 48.000 20.88 0.00 34.07 2.90
610 613 6.183361 CCCTAGGGTAGTAGTAGTCATACACA 60.183 46.154 20.88 0.00 34.07 3.72
611 614 7.460071 CCTAGGGTAGTAGTAGTCATACACAT 58.540 42.308 0.00 0.00 34.07 3.21
612 615 8.600668 CCTAGGGTAGTAGTAGTCATACACATA 58.399 40.741 0.00 0.00 34.07 2.29
614 617 8.688747 AGGGTAGTAGTAGTCATACACATAAC 57.311 38.462 0.00 0.00 34.07 1.89
615 618 8.277197 AGGGTAGTAGTAGTCATACACATAACA 58.723 37.037 0.00 0.00 34.07 2.41
616 619 8.906867 GGGTAGTAGTAGTCATACACATAACAA 58.093 37.037 0.00 0.00 34.07 2.83
687 690 7.804614 TGCGAAAACCAATACAATACATTTC 57.195 32.000 0.00 0.00 0.00 2.17
707 715 1.587946 CTTTTGCAGAAAACACCGTGC 59.412 47.619 0.00 0.00 36.42 5.34
729 739 4.723248 CCTTCGGTAATCTTTTTGCAGAC 58.277 43.478 0.00 0.00 0.00 3.51
950 1002 2.003658 CTCGCTCACTCCTCCTCTGC 62.004 65.000 0.00 0.00 0.00 4.26
1073 1168 1.139734 GCTCAGCTTCCGATGACGA 59.860 57.895 0.00 0.00 42.66 4.20
1181 1305 6.014327 ACCTGTGGATCAAATGTTTGCTATTT 60.014 34.615 0.00 0.00 38.05 1.40
1214 1342 2.175202 CCTGCTACCACTGAAGACTCT 58.825 52.381 0.00 0.00 0.00 3.24
1215 1343 3.357203 CCTGCTACCACTGAAGACTCTA 58.643 50.000 0.00 0.00 0.00 2.43
1221 1349 5.813157 GCTACCACTGAAGACTCTAATTTCC 59.187 44.000 0.00 0.00 0.00 3.13
1279 1407 1.076549 ATGGGAAGGCCGCAGAAAA 59.923 52.632 0.00 0.00 41.21 2.29
1312 1440 0.883833 CAAGGAATCCACACTGGCAC 59.116 55.000 0.61 0.00 37.47 5.01
1464 1600 3.423539 TTGTTTACTCTGGCAGCATCT 57.576 42.857 10.34 0.00 0.00 2.90
1562 1700 5.132502 CAGAATATGCATGGGTTAGTGGAA 58.867 41.667 10.16 0.00 0.00 3.53
1566 1704 1.702401 TGCATGGGTTAGTGGAACAGA 59.298 47.619 0.00 0.00 41.80 3.41
1925 2141 3.251729 CACCCTTGAGAATGCATTATCCG 59.748 47.826 26.66 18.50 0.00 4.18
1998 2214 3.852286 TGATGCATTCATTTGCTGTTCC 58.148 40.909 0.00 0.00 43.18 3.62
2024 2243 6.127338 TGACTTGACACAAGAGAAGAAGAAGA 60.127 38.462 16.65 0.00 0.00 2.87
2027 2246 6.166984 TGACACAAGAGAAGAAGAAGATGT 57.833 37.500 0.00 0.00 0.00 3.06
2193 2422 7.547019 TCAAGCTAGTGTCATTAAGAACATCAG 59.453 37.037 0.00 0.02 0.00 2.90
2243 2472 7.724506 AGAATATGCAGATCCAAATTGATGAGT 59.275 33.333 0.00 0.00 0.00 3.41
2265 2494 3.351740 TGCAGAAGACAGTGGAACAAAA 58.648 40.909 0.00 0.00 44.16 2.44
2269 2498 5.095490 CAGAAGACAGTGGAACAAAACAAC 58.905 41.667 0.00 0.00 44.16 3.32
2275 2504 3.606346 CAGTGGAACAAAACAACGTGAAC 59.394 43.478 0.00 0.00 44.16 3.18
2334 2563 2.563179 GTGGCTGTGGAAGAGAAGACTA 59.437 50.000 0.00 0.00 0.00 2.59
2524 2816 7.857885 GCTGAATGTTATGGTATTTAGAGTTGC 59.142 37.037 0.00 0.00 0.00 4.17
2570 2943 7.611079 TGATGGATGTGATATGAACTTTGTTGA 59.389 33.333 0.00 0.00 0.00 3.18
2571 2944 7.943079 TGGATGTGATATGAACTTTGTTGAT 57.057 32.000 0.00 0.00 0.00 2.57
2572 2945 8.352137 TGGATGTGATATGAACTTTGTTGATT 57.648 30.769 0.00 0.00 0.00 2.57
2573 2946 9.460019 TGGATGTGATATGAACTTTGTTGATTA 57.540 29.630 0.00 0.00 0.00 1.75
2574 2947 9.941664 GGATGTGATATGAACTTTGTTGATTAG 57.058 33.333 0.00 0.00 0.00 1.73
2577 2950 9.725019 TGTGATATGAACTTTGTTGATTAGACT 57.275 29.630 0.00 0.00 0.00 3.24
2578 2951 9.979270 GTGATATGAACTTTGTTGATTAGACTG 57.021 33.333 0.00 0.00 0.00 3.51
2579 2952 9.166173 TGATATGAACTTTGTTGATTAGACTGG 57.834 33.333 0.00 0.00 0.00 4.00
2580 2953 9.383519 GATATGAACTTTGTTGATTAGACTGGA 57.616 33.333 0.00 0.00 0.00 3.86
2581 2954 9.911788 ATATGAACTTTGTTGATTAGACTGGAT 57.088 29.630 0.00 0.00 0.00 3.41
2582 2955 7.439157 TGAACTTTGTTGATTAGACTGGATG 57.561 36.000 0.00 0.00 0.00 3.51
2583 2956 6.430925 TGAACTTTGTTGATTAGACTGGATGG 59.569 38.462 0.00 0.00 0.00 3.51
2584 2957 6.126863 ACTTTGTTGATTAGACTGGATGGA 57.873 37.500 0.00 0.00 0.00 3.41
2585 2958 6.725364 ACTTTGTTGATTAGACTGGATGGAT 58.275 36.000 0.00 0.00 0.00 3.41
2586 2959 6.600822 ACTTTGTTGATTAGACTGGATGGATG 59.399 38.462 0.00 0.00 0.00 3.51
2587 2960 5.698741 TGTTGATTAGACTGGATGGATGT 57.301 39.130 0.00 0.00 0.00 3.06
2588 2961 5.430886 TGTTGATTAGACTGGATGGATGTG 58.569 41.667 0.00 0.00 0.00 3.21
2589 2962 5.189539 TGTTGATTAGACTGGATGGATGTGA 59.810 40.000 0.00 0.00 0.00 3.58
2590 2963 6.126681 TGTTGATTAGACTGGATGGATGTGAT 60.127 38.462 0.00 0.00 0.00 3.06
2591 2964 7.071071 TGTTGATTAGACTGGATGGATGTGATA 59.929 37.037 0.00 0.00 0.00 2.15
2592 2965 7.803487 TGATTAGACTGGATGGATGTGATAT 57.197 36.000 0.00 0.00 0.00 1.63
2593 2966 7.618137 TGATTAGACTGGATGGATGTGATATG 58.382 38.462 0.00 0.00 0.00 1.78
2594 2967 4.904895 AGACTGGATGGATGTGATATGG 57.095 45.455 0.00 0.00 0.00 2.74
2595 2968 4.496540 AGACTGGATGGATGTGATATGGA 58.503 43.478 0.00 0.00 0.00 3.41
2596 2969 4.909695 AGACTGGATGGATGTGATATGGAA 59.090 41.667 0.00 0.00 0.00 3.53
2597 2970 5.550796 AGACTGGATGGATGTGATATGGAAT 59.449 40.000 0.00 0.00 0.00 3.01
2598 2971 6.732390 AGACTGGATGGATGTGATATGGAATA 59.268 38.462 0.00 0.00 0.00 1.75
2599 2972 7.405272 AGACTGGATGGATGTGATATGGAATAT 59.595 37.037 0.00 0.00 43.59 1.28
2600 2973 7.344134 ACTGGATGGATGTGATATGGAATATG 58.656 38.462 0.00 0.00 40.26 1.78
2601 2974 7.037080 ACTGGATGGATGTGATATGGAATATGT 60.037 37.037 0.00 0.00 40.26 2.29
2602 2975 7.701815 TGGATGGATGTGATATGGAATATGTT 58.298 34.615 0.00 0.00 40.26 2.71
2603 2976 7.612633 TGGATGGATGTGATATGGAATATGTTG 59.387 37.037 0.00 0.00 40.26 3.33
2628 3001 9.367160 TGTTTAGACTAGATGGATGTGATATGA 57.633 33.333 0.00 0.00 0.00 2.15
2751 3273 2.304761 TCGATGCCACTTTAGGGTTCTT 59.695 45.455 0.00 0.00 0.00 2.52
2807 3329 2.486982 CACTTTAGGGTTCTCTCGACGA 59.513 50.000 0.00 0.00 0.00 4.20
2819 3341 1.136774 TCGACGACGAGGCATCAAG 59.863 57.895 5.75 0.00 43.81 3.02
2831 3353 3.305720 AGGCATCAAGTAGGGTTATCGA 58.694 45.455 0.00 0.00 0.00 3.59
2856 3378 2.486982 CACTTTAGGGTTCTCTCGACGA 59.513 50.000 0.00 0.00 0.00 4.20
2868 3846 1.136774 TCGACGACGAGGCATCAAG 59.863 57.895 5.75 0.00 43.81 3.02
2903 3881 2.168728 GCCACTTTAGGGTTCTCTCGAT 59.831 50.000 0.00 0.00 0.00 3.59
2905 3883 3.447586 CCACTTTAGGGTTCTCTCGATGA 59.552 47.826 0.00 0.00 0.00 2.92
2917 3895 3.648528 TCGATGACGAGGCATCAAG 57.351 52.632 17.94 3.95 43.76 3.02
2954 3932 3.006537 CCACTTTAGGGTTCTCTCGACAA 59.993 47.826 0.00 0.00 0.00 3.18
2966 3944 3.122150 TCGACAACGAGGCATCAAG 57.878 52.632 0.00 0.00 43.81 3.02
2989 3967 6.120220 AGTAGGGTTATCAATGCCACTTTAC 58.880 40.000 0.00 0.00 0.00 2.01
3015 4042 3.648528 TCGACATCGAGGCATCAAG 57.351 52.632 0.00 0.00 44.22 3.02
3020 4047 1.202580 ACATCGAGGCATCAAGTAGGC 60.203 52.381 0.00 0.00 0.00 3.93
3025 4052 3.388024 TCGAGGCATCAAGTAGGCTTATT 59.612 43.478 0.00 0.00 41.09 1.40
3028 4055 5.116084 AGGCATCAAGTAGGCTTATTGAA 57.884 39.130 15.31 3.32 37.35 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.720909 TTGTTATTATTGTTGTCATTGTCGTG 57.279 30.769 0.00 0.00 0.00 4.35
105 106 0.107831 TTTGCTACCGTGTCAAGGCT 59.892 50.000 4.52 0.00 0.00 4.58
114 115 1.599797 GCACACCCTTTGCTACCGT 60.600 57.895 0.00 0.00 37.00 4.83
116 117 1.228429 TGGCACACCCTTTGCTACC 60.228 57.895 0.00 0.00 40.07 3.18
117 118 4.492604 TGGCACACCCTTTGCTAC 57.507 55.556 0.00 0.00 40.07 3.58
137 140 2.609916 GCATACGCTCTTTCCTCCTTTC 59.390 50.000 0.00 0.00 34.30 2.62
162 165 4.160626 GTGTGAGTACAGCCTAAGATCCTT 59.839 45.833 0.00 0.00 37.52 3.36
163 166 3.702045 GTGTGAGTACAGCCTAAGATCCT 59.298 47.826 0.00 0.00 37.52 3.24
166 169 5.423610 AGAATGTGTGAGTACAGCCTAAGAT 59.576 40.000 0.00 0.00 37.52 2.40
173 176 7.602517 AAATAAGAGAATGTGTGAGTACAGC 57.397 36.000 0.00 0.00 37.52 4.40
215 218 7.349711 GTCAACTTGATAAGCTACGAACAAAA 58.650 34.615 0.00 0.00 0.00 2.44
222 225 2.281762 GCGGTCAACTTGATAAGCTACG 59.718 50.000 0.00 0.00 0.00 3.51
268 271 3.199946 CCATCTTACCTACTCCAAGGCAA 59.800 47.826 0.00 0.00 40.62 4.52
269 272 2.771943 CCATCTTACCTACTCCAAGGCA 59.228 50.000 0.00 0.00 40.62 4.75
270 273 3.039011 TCCATCTTACCTACTCCAAGGC 58.961 50.000 0.00 0.00 40.62 4.35
271 274 4.503991 GCATCCATCTTACCTACTCCAAGG 60.504 50.000 0.00 0.00 42.82 3.61
272 275 4.101585 TGCATCCATCTTACCTACTCCAAG 59.898 45.833 0.00 0.00 0.00 3.61
273 276 4.037222 TGCATCCATCTTACCTACTCCAA 58.963 43.478 0.00 0.00 0.00 3.53
274 277 3.653164 TGCATCCATCTTACCTACTCCA 58.347 45.455 0.00 0.00 0.00 3.86
275 278 4.284490 TCATGCATCCATCTTACCTACTCC 59.716 45.833 0.00 0.00 0.00 3.85
276 279 5.474578 TCATGCATCCATCTTACCTACTC 57.525 43.478 0.00 0.00 0.00 2.59
277 280 7.746243 ATATCATGCATCCATCTTACCTACT 57.254 36.000 0.00 0.00 0.00 2.57
278 281 8.147058 CCTATATCATGCATCCATCTTACCTAC 58.853 40.741 0.00 0.00 0.00 3.18
279 282 7.202038 GCCTATATCATGCATCCATCTTACCTA 60.202 40.741 0.00 0.00 0.00 3.08
280 283 6.409005 GCCTATATCATGCATCCATCTTACCT 60.409 42.308 0.00 0.00 0.00 3.08
281 284 5.762218 GCCTATATCATGCATCCATCTTACC 59.238 44.000 0.00 0.00 0.00 2.85
282 285 6.351711 TGCCTATATCATGCATCCATCTTAC 58.648 40.000 0.00 0.00 0.00 2.34
283 286 6.157471 ACTGCCTATATCATGCATCCATCTTA 59.843 38.462 0.00 0.00 33.97 2.10
284 287 5.045066 ACTGCCTATATCATGCATCCATCTT 60.045 40.000 0.00 0.00 33.97 2.40
285 288 4.473922 ACTGCCTATATCATGCATCCATCT 59.526 41.667 0.00 0.00 33.97 2.90
286 289 4.778579 ACTGCCTATATCATGCATCCATC 58.221 43.478 0.00 0.00 33.97 3.51
287 290 4.857130 ACTGCCTATATCATGCATCCAT 57.143 40.909 0.00 0.00 33.97 3.41
288 291 4.645863 AACTGCCTATATCATGCATCCA 57.354 40.909 0.00 0.00 33.97 3.41
289 292 4.093998 CGAAACTGCCTATATCATGCATCC 59.906 45.833 0.00 0.00 33.97 3.51
290 293 4.692625 ACGAAACTGCCTATATCATGCATC 59.307 41.667 0.00 0.00 33.97 3.91
291 294 4.645535 ACGAAACTGCCTATATCATGCAT 58.354 39.130 0.00 0.00 33.97 3.96
292 295 4.058124 GACGAAACTGCCTATATCATGCA 58.942 43.478 0.00 0.00 0.00 3.96
293 296 4.151335 CAGACGAAACTGCCTATATCATGC 59.849 45.833 0.00 0.00 0.00 4.06
294 297 5.403766 GTCAGACGAAACTGCCTATATCATG 59.596 44.000 0.00 0.00 37.75 3.07
295 298 5.533482 GTCAGACGAAACTGCCTATATCAT 58.467 41.667 0.00 0.00 37.75 2.45
296 299 4.497507 CGTCAGACGAAACTGCCTATATCA 60.498 45.833 18.63 0.00 46.05 2.15
297 300 3.975670 CGTCAGACGAAACTGCCTATATC 59.024 47.826 18.63 0.00 46.05 1.63
298 301 3.795826 GCGTCAGACGAAACTGCCTATAT 60.796 47.826 27.29 0.00 46.05 0.86
299 302 2.479049 GCGTCAGACGAAACTGCCTATA 60.479 50.000 27.29 0.00 46.05 1.31
300 303 1.736032 GCGTCAGACGAAACTGCCTAT 60.736 52.381 27.29 0.00 46.05 2.57
301 304 0.388134 GCGTCAGACGAAACTGCCTA 60.388 55.000 27.29 0.00 46.05 3.93
302 305 1.664965 GCGTCAGACGAAACTGCCT 60.665 57.895 27.29 0.00 46.05 4.75
312 315 0.232303 CAAGTTTCACGGCGTCAGAC 59.768 55.000 10.85 1.81 0.00 3.51
316 319 0.232303 CAGACAAGTTTCACGGCGTC 59.768 55.000 10.85 0.00 0.00 5.19
320 323 3.364023 GTCGATACAGACAAGTTTCACGG 59.636 47.826 0.00 0.00 40.65 4.94
358 361 4.099266 TGCCATGCGCTTTTCCTTTATTAT 59.901 37.500 9.73 0.00 38.78 1.28
374 377 8.338259 CCGTATATATAATCTTTTCTGCCATGC 58.662 37.037 0.00 0.00 0.00 4.06
376 379 9.383519 CACCGTATATATAATCTTTTCTGCCAT 57.616 33.333 0.00 0.00 0.00 4.40
377 380 8.590204 TCACCGTATATATAATCTTTTCTGCCA 58.410 33.333 0.00 0.00 0.00 4.92
378 381 8.997621 TCACCGTATATATAATCTTTTCTGCC 57.002 34.615 0.00 0.00 0.00 4.85
379 382 8.596380 GCTCACCGTATATATAATCTTTTCTGC 58.404 37.037 0.00 0.00 0.00 4.26
382 385 7.758528 ACCGCTCACCGTATATATAATCTTTTC 59.241 37.037 0.00 0.00 34.38 2.29
387 390 5.298777 AGGACCGCTCACCGTATATATAATC 59.701 44.000 0.00 0.00 34.38 1.75
389 392 4.592942 AGGACCGCTCACCGTATATATAA 58.407 43.478 0.00 0.00 34.38 0.98
390 393 4.080695 AGAGGACCGCTCACCGTATATATA 60.081 45.833 0.00 0.00 34.38 0.86
391 394 3.015327 GAGGACCGCTCACCGTATATAT 58.985 50.000 0.00 0.00 34.38 0.86
392 395 2.039480 AGAGGACCGCTCACCGTATATA 59.961 50.000 0.00 0.00 34.38 0.86
393 396 1.202903 AGAGGACCGCTCACCGTATAT 60.203 52.381 0.00 0.00 34.38 0.86
394 397 0.182061 AGAGGACCGCTCACCGTATA 59.818 55.000 0.00 0.00 34.38 1.47
395 398 1.076923 AGAGGACCGCTCACCGTAT 60.077 57.895 0.00 0.00 34.38 3.06
396 399 2.044555 CAGAGGACCGCTCACCGTA 61.045 63.158 0.00 0.00 34.38 4.02
397 400 3.374402 CAGAGGACCGCTCACCGT 61.374 66.667 0.00 0.00 34.38 4.83
398 401 4.803426 GCAGAGGACCGCTCACCG 62.803 72.222 0.00 0.00 0.00 4.94
399 402 3.386237 AGCAGAGGACCGCTCACC 61.386 66.667 0.00 0.00 31.16 4.02
403 406 1.548357 ATGTTGAGCAGAGGACCGCT 61.548 55.000 0.00 0.00 42.42 5.52
404 407 1.078848 ATGTTGAGCAGAGGACCGC 60.079 57.895 0.00 0.00 0.00 5.68
405 408 0.247460 TGATGTTGAGCAGAGGACCG 59.753 55.000 0.00 0.00 0.00 4.79
420 423 1.133025 GGTGCAGAATTCCGGTTGATG 59.867 52.381 0.00 0.00 0.00 3.07
422 425 0.109532 TGGTGCAGAATTCCGGTTGA 59.890 50.000 0.00 0.00 0.00 3.18
427 430 2.480555 GCGTGGTGCAGAATTCCG 59.519 61.111 0.65 0.00 45.45 4.30
428 431 2.325082 ACGCGTGGTGCAGAATTCC 61.325 57.895 12.93 0.00 46.97 3.01
429 432 1.154413 CACGCGTGGTGCAGAATTC 60.154 57.895 31.15 0.00 46.97 2.17
430 433 2.616330 CCACGCGTGGTGCAGAATT 61.616 57.895 42.92 0.00 46.97 2.17
431 434 3.049674 CCACGCGTGGTGCAGAAT 61.050 61.111 42.92 0.58 46.97 2.40
440 443 3.792047 CTGGTCATGCCACGCGTG 61.792 66.667 31.77 31.77 45.79 5.34
441 444 4.314440 ACTGGTCATGCCACGCGT 62.314 61.111 5.58 5.58 43.61 6.01
442 445 3.490759 GACTGGTCATGCCACGCG 61.491 66.667 3.53 3.53 43.61 6.01
443 446 3.127533 GGACTGGTCATGCCACGC 61.128 66.667 4.93 1.33 43.61 5.34
444 447 1.742880 CAGGACTGGTCATGCCACG 60.743 63.158 2.54 4.99 43.61 4.94
445 448 1.377725 CCAGGACTGGTCATGCCAC 60.378 63.158 10.22 0.00 45.53 5.01
446 449 3.080641 CCAGGACTGGTCATGCCA 58.919 61.111 10.22 8.33 45.53 4.92
455 458 4.455877 GGTTGTTCAAGATAACCAGGACTG 59.544 45.833 0.00 0.00 42.60 3.51
456 459 4.104102 TGGTTGTTCAAGATAACCAGGACT 59.896 41.667 12.59 0.00 46.41 3.85
457 460 4.394729 TGGTTGTTCAAGATAACCAGGAC 58.605 43.478 12.59 0.00 46.41 3.85
458 461 4.715534 TGGTTGTTCAAGATAACCAGGA 57.284 40.909 12.59 0.00 46.41 3.86
462 465 3.071479 TCGCTGGTTGTTCAAGATAACC 58.929 45.455 0.00 0.00 43.20 2.85
463 466 4.201822 GGATCGCTGGTTGTTCAAGATAAC 60.202 45.833 0.00 0.00 0.00 1.89
464 467 3.938963 GGATCGCTGGTTGTTCAAGATAA 59.061 43.478 0.00 0.00 0.00 1.75
465 468 3.197766 AGGATCGCTGGTTGTTCAAGATA 59.802 43.478 0.00 0.00 0.00 1.98
466 469 2.026822 AGGATCGCTGGTTGTTCAAGAT 60.027 45.455 0.00 0.00 0.00 2.40
467 470 1.347707 AGGATCGCTGGTTGTTCAAGA 59.652 47.619 0.00 0.00 0.00 3.02
468 471 1.466167 CAGGATCGCTGGTTGTTCAAG 59.534 52.381 3.90 0.00 0.00 3.02
469 472 1.522668 CAGGATCGCTGGTTGTTCAA 58.477 50.000 3.90 0.00 0.00 2.69
470 473 0.321564 CCAGGATCGCTGGTTGTTCA 60.322 55.000 17.57 0.00 37.22 3.18
471 474 0.036388 TCCAGGATCGCTGGTTGTTC 60.036 55.000 22.26 0.00 42.35 3.18
472 475 0.400213 TTCCAGGATCGCTGGTTGTT 59.600 50.000 22.26 0.00 42.35 2.83
473 476 0.400213 TTTCCAGGATCGCTGGTTGT 59.600 50.000 22.26 0.00 42.35 3.32
474 477 1.533625 TTTTCCAGGATCGCTGGTTG 58.466 50.000 22.26 5.37 42.35 3.77
475 478 2.290896 TGATTTTCCAGGATCGCTGGTT 60.291 45.455 22.26 11.19 42.35 3.67
476 479 1.281867 TGATTTTCCAGGATCGCTGGT 59.718 47.619 22.26 9.36 42.35 4.00
477 480 1.672881 GTGATTTTCCAGGATCGCTGG 59.327 52.381 19.03 19.03 43.06 4.85
478 481 2.358957 TGTGATTTTCCAGGATCGCTG 58.641 47.619 0.00 4.67 34.66 5.18
479 482 2.787473 TGTGATTTTCCAGGATCGCT 57.213 45.000 0.00 0.00 34.66 4.93
480 483 3.057596 TGTTTGTGATTTTCCAGGATCGC 60.058 43.478 0.00 0.00 34.28 4.58
481 484 4.023279 TGTGTTTGTGATTTTCCAGGATCG 60.023 41.667 0.00 0.00 0.00 3.69
482 485 5.452078 TGTGTTTGTGATTTTCCAGGATC 57.548 39.130 0.00 0.00 0.00 3.36
483 486 5.776716 AGATGTGTTTGTGATTTTCCAGGAT 59.223 36.000 0.00 0.00 0.00 3.24
484 487 5.139727 AGATGTGTTTGTGATTTTCCAGGA 58.860 37.500 0.00 0.00 0.00 3.86
485 488 5.458041 AGATGTGTTTGTGATTTTCCAGG 57.542 39.130 0.00 0.00 0.00 4.45
486 489 5.464168 GGAGATGTGTTTGTGATTTTCCAG 58.536 41.667 0.00 0.00 0.00 3.86
487 490 4.280677 GGGAGATGTGTTTGTGATTTTCCA 59.719 41.667 0.00 0.00 0.00 3.53
488 491 4.524328 AGGGAGATGTGTTTGTGATTTTCC 59.476 41.667 0.00 0.00 0.00 3.13
489 492 5.241506 TGAGGGAGATGTGTTTGTGATTTTC 59.758 40.000 0.00 0.00 0.00 2.29
490 493 5.139727 TGAGGGAGATGTGTTTGTGATTTT 58.860 37.500 0.00 0.00 0.00 1.82
491 494 4.728772 TGAGGGAGATGTGTTTGTGATTT 58.271 39.130 0.00 0.00 0.00 2.17
492 495 4.371624 TGAGGGAGATGTGTTTGTGATT 57.628 40.909 0.00 0.00 0.00 2.57
493 496 4.581309 ATGAGGGAGATGTGTTTGTGAT 57.419 40.909 0.00 0.00 0.00 3.06
494 497 5.698741 ATATGAGGGAGATGTGTTTGTGA 57.301 39.130 0.00 0.00 0.00 3.58
495 498 6.348498 TGTATATGAGGGAGATGTGTTTGTG 58.652 40.000 0.00 0.00 0.00 3.33
496 499 6.560003 TGTATATGAGGGAGATGTGTTTGT 57.440 37.500 0.00 0.00 0.00 2.83
497 500 7.716560 TGATTGTATATGAGGGAGATGTGTTTG 59.283 37.037 0.00 0.00 0.00 2.93
498 501 7.805163 TGATTGTATATGAGGGAGATGTGTTT 58.195 34.615 0.00 0.00 0.00 2.83
499 502 7.379059 TGATTGTATATGAGGGAGATGTGTT 57.621 36.000 0.00 0.00 0.00 3.32
500 503 7.392418 CATGATTGTATATGAGGGAGATGTGT 58.608 38.462 0.00 0.00 0.00 3.72
501 504 6.315642 GCATGATTGTATATGAGGGAGATGTG 59.684 42.308 0.00 0.00 0.00 3.21
502 505 6.215023 AGCATGATTGTATATGAGGGAGATGT 59.785 38.462 0.00 0.00 0.00 3.06
503 506 6.651086 AGCATGATTGTATATGAGGGAGATG 58.349 40.000 0.00 0.00 0.00 2.90
504 507 6.442885 TGAGCATGATTGTATATGAGGGAGAT 59.557 38.462 0.00 0.00 0.00 2.75
505 508 5.781818 TGAGCATGATTGTATATGAGGGAGA 59.218 40.000 0.00 0.00 0.00 3.71
506 509 6.046290 TGAGCATGATTGTATATGAGGGAG 57.954 41.667 0.00 0.00 0.00 4.30
507 510 5.570236 GCTGAGCATGATTGTATATGAGGGA 60.570 44.000 0.00 0.00 0.00 4.20
508 511 4.634883 GCTGAGCATGATTGTATATGAGGG 59.365 45.833 0.00 0.00 0.00 4.30
509 512 4.329256 CGCTGAGCATGATTGTATATGAGG 59.671 45.833 4.88 0.00 0.00 3.86
510 513 5.451828 CGCTGAGCATGATTGTATATGAG 57.548 43.478 4.88 0.00 0.00 2.90
526 529 1.572085 CCAGTTGGAGTTGCGCTGAG 61.572 60.000 9.73 0.00 37.39 3.35
527 530 1.597854 CCAGTTGGAGTTGCGCTGA 60.598 57.895 9.73 0.00 37.39 4.26
528 531 2.949106 CCAGTTGGAGTTGCGCTG 59.051 61.111 9.73 0.00 37.39 5.18
529 532 2.980233 GCCAGTTGGAGTTGCGCT 60.980 61.111 9.73 0.00 37.39 5.92
530 533 2.629656 ATGCCAGTTGGAGTTGCGC 61.630 57.895 0.00 0.00 37.39 6.09
531 534 1.210931 CATGCCAGTTGGAGTTGCG 59.789 57.895 1.45 0.00 37.39 4.85
532 535 1.533625 TACATGCCAGTTGGAGTTGC 58.466 50.000 1.45 0.00 37.39 4.17
533 536 2.228822 GGTTACATGCCAGTTGGAGTTG 59.771 50.000 1.45 0.00 37.39 3.16
534 537 2.158534 TGGTTACATGCCAGTTGGAGTT 60.159 45.455 1.45 0.00 37.39 3.01
535 538 1.423541 TGGTTACATGCCAGTTGGAGT 59.576 47.619 1.45 0.00 37.39 3.85
536 539 2.198827 TGGTTACATGCCAGTTGGAG 57.801 50.000 1.45 0.00 37.39 3.86
537 540 2.625790 GTTTGGTTACATGCCAGTTGGA 59.374 45.455 1.45 0.00 37.31 3.53
538 541 2.288763 GGTTTGGTTACATGCCAGTTGG 60.289 50.000 0.00 0.00 37.31 3.77
539 542 2.363680 TGGTTTGGTTACATGCCAGTTG 59.636 45.455 0.00 0.00 37.31 3.16
540 543 2.672098 TGGTTTGGTTACATGCCAGTT 58.328 42.857 0.00 0.00 37.31 3.16
541 544 2.373335 TGGTTTGGTTACATGCCAGT 57.627 45.000 0.00 0.00 37.31 4.00
542 545 3.389221 GTTTGGTTTGGTTACATGCCAG 58.611 45.455 0.00 0.00 37.31 4.85
543 546 2.103263 GGTTTGGTTTGGTTACATGCCA 59.897 45.455 0.00 0.00 0.00 4.92
544 547 2.103263 TGGTTTGGTTTGGTTACATGCC 59.897 45.455 0.00 0.00 0.00 4.40
545 548 3.460857 TGGTTTGGTTTGGTTACATGC 57.539 42.857 0.00 0.00 0.00 4.06
546 549 5.605534 TCAATGGTTTGGTTTGGTTACATG 58.394 37.500 0.00 0.00 33.44 3.21
547 550 5.878406 TCAATGGTTTGGTTTGGTTACAT 57.122 34.783 0.00 0.00 33.44 2.29
548 551 5.046591 TGTTCAATGGTTTGGTTTGGTTACA 60.047 36.000 0.00 0.00 33.44 2.41
549 552 5.420409 TGTTCAATGGTTTGGTTTGGTTAC 58.580 37.500 0.00 0.00 33.44 2.50
550 553 5.677319 TGTTCAATGGTTTGGTTTGGTTA 57.323 34.783 0.00 0.00 33.44 2.85
551 554 4.559862 TGTTCAATGGTTTGGTTTGGTT 57.440 36.364 0.00 0.00 33.44 3.67
552 555 4.257731 GTTGTTCAATGGTTTGGTTTGGT 58.742 39.130 0.00 0.00 33.44 3.67
553 556 3.625313 GGTTGTTCAATGGTTTGGTTTGG 59.375 43.478 0.00 0.00 33.44 3.28
554 557 4.256920 TGGTTGTTCAATGGTTTGGTTTG 58.743 39.130 0.00 0.00 33.44 2.93
555 558 4.559862 TGGTTGTTCAATGGTTTGGTTT 57.440 36.364 0.00 0.00 33.44 3.27
556 559 4.257731 GTTGGTTGTTCAATGGTTTGGTT 58.742 39.130 0.00 0.00 33.44 3.67
557 560 3.261897 TGTTGGTTGTTCAATGGTTTGGT 59.738 39.130 0.00 0.00 33.44 3.67
558 561 3.620821 GTGTTGGTTGTTCAATGGTTTGG 59.379 43.478 0.00 0.00 33.44 3.28
559 562 4.248859 TGTGTTGGTTGTTCAATGGTTTG 58.751 39.130 0.00 0.00 0.00 2.93
560 563 4.543590 TGTGTTGGTTGTTCAATGGTTT 57.456 36.364 0.00 0.00 0.00 3.27
561 564 4.161189 TCATGTGTTGGTTGTTCAATGGTT 59.839 37.500 0.00 0.00 0.00 3.67
562 565 3.703556 TCATGTGTTGGTTGTTCAATGGT 59.296 39.130 0.00 0.00 0.00 3.55
563 566 4.050553 GTCATGTGTTGGTTGTTCAATGG 58.949 43.478 0.00 0.00 0.00 3.16
564 567 4.050553 GGTCATGTGTTGGTTGTTCAATG 58.949 43.478 0.00 0.00 0.00 2.82
565 568 3.069443 GGGTCATGTGTTGGTTGTTCAAT 59.931 43.478 0.00 0.00 0.00 2.57
566 569 2.428890 GGGTCATGTGTTGGTTGTTCAA 59.571 45.455 0.00 0.00 0.00 2.69
567 570 2.028130 GGGTCATGTGTTGGTTGTTCA 58.972 47.619 0.00 0.00 0.00 3.18
568 571 2.306847 AGGGTCATGTGTTGGTTGTTC 58.693 47.619 0.00 0.00 0.00 3.18
569 572 2.452600 AGGGTCATGTGTTGGTTGTT 57.547 45.000 0.00 0.00 0.00 2.83
570 573 2.224769 CCTAGGGTCATGTGTTGGTTGT 60.225 50.000 0.00 0.00 0.00 3.32
571 574 2.436417 CCTAGGGTCATGTGTTGGTTG 58.564 52.381 0.00 0.00 0.00 3.77
572 575 1.354368 CCCTAGGGTCATGTGTTGGTT 59.646 52.381 20.88 0.00 0.00 3.67
573 576 0.991920 CCCTAGGGTCATGTGTTGGT 59.008 55.000 20.88 0.00 0.00 3.67
574 577 3.882131 CCCTAGGGTCATGTGTTGG 57.118 57.895 20.88 0.00 0.00 3.77
585 588 6.183361 TGTGTATGACTACTACTACCCTAGGG 60.183 46.154 27.36 27.36 42.03 3.53
586 589 6.835174 TGTGTATGACTACTACTACCCTAGG 58.165 44.000 0.06 0.06 0.00 3.02
588 591 9.784531 GTTATGTGTATGACTACTACTACCCTA 57.215 37.037 0.00 0.00 0.00 3.53
589 592 8.277197 TGTTATGTGTATGACTACTACTACCCT 58.723 37.037 0.00 0.00 0.00 4.34
590 593 8.455903 TGTTATGTGTATGACTACTACTACCC 57.544 38.462 0.00 0.00 0.00 3.69
616 619 8.233868 GGTTTTGTGCAATTTACTCTTGTTTTT 58.766 29.630 0.00 0.00 0.00 1.94
617 620 7.389053 TGGTTTTGTGCAATTTACTCTTGTTTT 59.611 29.630 0.00 0.00 0.00 2.43
618 621 6.876257 TGGTTTTGTGCAATTTACTCTTGTTT 59.124 30.769 0.00 0.00 0.00 2.83
619 622 6.402222 TGGTTTTGTGCAATTTACTCTTGTT 58.598 32.000 0.00 0.00 0.00 2.83
687 690 1.587946 GCACGGTGTTTTCTGCAAAAG 59.412 47.619 10.24 0.00 31.92 2.27
707 715 7.273040 GTTGTCTGCAAAAAGATTACCGAAGG 61.273 42.308 0.00 0.00 45.87 3.46
729 739 1.482621 CGATCCGCCGATCAGTGTTG 61.483 60.000 14.20 0.00 44.55 3.33
884 897 1.004918 GAGTGGGGACAACACCGAG 60.005 63.158 0.00 0.00 46.06 4.63
891 904 1.846124 GAGTGGGGAGTGGGGACAA 60.846 63.158 0.00 0.00 46.06 3.18
1181 1305 2.965831 GGTAGCAGGGATCTGTCATACA 59.034 50.000 0.00 0.00 42.78 2.29
1214 1342 3.560453 CCGTTTCAGGTCCCTGGAAATTA 60.560 47.826 8.66 0.00 42.55 1.40
1215 1343 2.514803 CGTTTCAGGTCCCTGGAAATT 58.485 47.619 8.66 0.00 42.55 1.82
1221 1349 0.396811 AACTCCGTTTCAGGTCCCTG 59.603 55.000 7.02 7.02 44.86 4.45
1279 1407 2.435372 TCCTTGGAAAGCAACACACT 57.565 45.000 0.00 0.00 44.44 3.55
1312 1440 2.354510 TCAGCACAACAAAGAAACCTCG 59.645 45.455 0.00 0.00 0.00 4.63
1464 1600 0.263172 TGCCAGACCAAGGGGAAAAA 59.737 50.000 0.00 0.00 38.05 1.94
1562 1700 3.144506 CAAGTTGCATCCTCTGTTCTGT 58.855 45.455 0.00 0.00 0.00 3.41
1566 1704 5.133221 ACTAAACAAGTTGCATCCTCTGTT 58.867 37.500 1.81 0.00 33.35 3.16
1717 1918 2.418060 GCAAGCTGAAGAGAGGACTACC 60.418 54.545 0.00 0.00 0.00 3.18
1998 2214 5.595885 TCTTCTTCTCTTGTGTCAAGTCAG 58.404 41.667 8.93 1.81 0.00 3.51
2024 2243 5.304101 CCAACTTCTCATAGCTCTCCTACAT 59.696 44.000 0.00 0.00 0.00 2.29
2027 2246 4.873010 ACCAACTTCTCATAGCTCTCCTA 58.127 43.478 0.00 0.00 0.00 2.94
2165 2384 6.759272 TGTTCTTAATGACACTAGCTTGAGT 58.241 36.000 1.04 0.00 0.00 3.41
2193 2422 3.492482 CCTCTCTTCAGCTAGCTTTAGCC 60.492 52.174 16.46 0.00 43.81 3.93
2243 2472 2.708216 TGTTCCACTGTCTTCTGCAA 57.292 45.000 0.00 0.00 0.00 4.08
2265 2494 0.974383 CCCCTCTAGGTTCACGTTGT 59.026 55.000 0.00 0.00 0.00 3.32
2269 2498 1.776662 TGATCCCCTCTAGGTTCACG 58.223 55.000 0.00 0.00 31.96 4.35
2275 2504 0.400525 TGGCCTTGATCCCCTCTAGG 60.401 60.000 3.32 0.00 46.25 3.02
2334 2563 3.571401 GCAAATGCCTAATGATACTGCCT 59.429 43.478 0.00 0.00 34.31 4.75
2570 2943 6.732390 TCCATATCACATCCATCCAGTCTAAT 59.268 38.462 0.00 0.00 0.00 1.73
2571 2944 6.084060 TCCATATCACATCCATCCAGTCTAA 58.916 40.000 0.00 0.00 0.00 2.10
2572 2945 5.654370 TCCATATCACATCCATCCAGTCTA 58.346 41.667 0.00 0.00 0.00 2.59
2573 2946 4.496540 TCCATATCACATCCATCCAGTCT 58.503 43.478 0.00 0.00 0.00 3.24
2574 2947 4.897509 TCCATATCACATCCATCCAGTC 57.102 45.455 0.00 0.00 0.00 3.51
2575 2948 5.855338 ATTCCATATCACATCCATCCAGT 57.145 39.130 0.00 0.00 0.00 4.00
2576 2949 7.344134 ACATATTCCATATCACATCCATCCAG 58.656 38.462 0.00 0.00 0.00 3.86
2577 2950 7.274772 ACATATTCCATATCACATCCATCCA 57.725 36.000 0.00 0.00 0.00 3.41
2578 2951 7.613022 ACAACATATTCCATATCACATCCATCC 59.387 37.037 0.00 0.00 0.00 3.51
2579 2952 8.571461 ACAACATATTCCATATCACATCCATC 57.429 34.615 0.00 0.00 0.00 3.51
2580 2953 8.945195 AACAACATATTCCATATCACATCCAT 57.055 30.769 0.00 0.00 0.00 3.41
2581 2954 8.765488 AAACAACATATTCCATATCACATCCA 57.235 30.769 0.00 0.00 0.00 3.41
2591 2964 9.784531 CCATCTAGTCTAAACAACATATTCCAT 57.215 33.333 0.00 0.00 0.00 3.41
2592 2965 8.988060 TCCATCTAGTCTAAACAACATATTCCA 58.012 33.333 0.00 0.00 0.00 3.53
2596 2969 9.770097 CACATCCATCTAGTCTAAACAACATAT 57.230 33.333 0.00 0.00 0.00 1.78
2597 2970 8.977412 TCACATCCATCTAGTCTAAACAACATA 58.023 33.333 0.00 0.00 0.00 2.29
2598 2971 7.851228 TCACATCCATCTAGTCTAAACAACAT 58.149 34.615 0.00 0.00 0.00 2.71
2599 2972 7.239763 TCACATCCATCTAGTCTAAACAACA 57.760 36.000 0.00 0.00 0.00 3.33
2600 2973 9.988815 ATATCACATCCATCTAGTCTAAACAAC 57.011 33.333 0.00 0.00 0.00 3.32
2601 2974 9.987272 CATATCACATCCATCTAGTCTAAACAA 57.013 33.333 0.00 0.00 0.00 2.83
2602 2975 9.367160 TCATATCACATCCATCTAGTCTAAACA 57.633 33.333 0.00 0.00 0.00 2.83
2628 3001 8.906867 CATCCATCTGGTCTAAACAACATATTT 58.093 33.333 0.00 0.00 36.34 1.40
2645 3018 8.674607 CAACATATTCCATATCACATCCATCTG 58.325 37.037 0.00 0.00 0.00 2.90
2683 3056 7.439157 AACAACATATTCCATATCACATCCG 57.561 36.000 0.00 0.00 0.00 4.18
2807 3329 1.276622 AACCCTACTTGATGCCTCGT 58.723 50.000 0.00 0.00 0.00 4.18
2819 3341 3.470645 AAGTGGCATCGATAACCCTAC 57.529 47.619 12.75 6.60 0.00 3.18
2831 3353 2.093447 CGAGAGAACCCTAAAGTGGCAT 60.093 50.000 0.00 0.00 0.00 4.40
2856 3378 1.276622 AACCCTACTTGATGCCTCGT 58.723 50.000 0.00 0.00 0.00 4.18
2868 3846 3.470645 AAGTGGCATCGATAACCCTAC 57.529 47.619 12.75 6.60 0.00 3.18
2903 3881 0.824109 CCCTACTTGATGCCTCGTCA 59.176 55.000 0.00 0.00 0.00 4.35
2905 3883 1.276622 AACCCTACTTGATGCCTCGT 58.723 50.000 0.00 0.00 0.00 4.18
2917 3895 3.470645 AAGTGGCATCGATAACCCTAC 57.529 47.619 12.75 6.60 0.00 3.18
2954 3932 1.276622 AACCCTACTTGATGCCTCGT 58.723 50.000 0.00 0.00 0.00 4.18
2966 3944 5.007332 CGTAAAGTGGCATTGATAACCCTAC 59.993 44.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.