Multiple sequence alignment - TraesCS2B01G151900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G151900 chr2B 100.000 5386 0 0 1 5386 118628470 118633855 0.000000e+00 9947.0
1 TraesCS2B01G151900 chr2B 79.741 617 115 9 29 639 764508435 764509047 6.400000e-119 438.0
2 TraesCS2B01G151900 chr2B 95.167 269 13 0 5118 5386 118652357 118652625 4.990000e-115 425.0
3 TraesCS2B01G151900 chr2D 95.519 2544 85 10 2583 5109 76872667 76875198 0.000000e+00 4039.0
4 TraesCS2B01G151900 chr2D 95.232 1468 38 9 938 2389 76870802 76872253 0.000000e+00 2294.0
5 TraesCS2B01G151900 chr2D 83.673 588 78 4 29 615 76868365 76868935 6.140000e-149 538.0
6 TraesCS2B01G151900 chr2D 82.842 577 90 9 30 602 34986846 34987417 4.810000e-140 508.0
7 TraesCS2B01G151900 chr2D 80.286 629 107 10 1 614 88403953 88404579 4.920000e-125 459.0
8 TraesCS2B01G151900 chr2D 92.614 176 12 1 702 876 161367280 161367105 8.960000e-63 252.0
9 TraesCS2B01G151900 chr2D 94.400 125 6 1 2461 2584 76872459 76872583 1.980000e-44 191.0
10 TraesCS2B01G151900 chr2D 96.552 58 1 1 2380 2437 76872405 76872461 1.600000e-15 95.3
11 TraesCS2B01G151900 chr2A 94.817 2219 85 9 2914 5109 77539264 77541475 0.000000e+00 3434.0
12 TraesCS2B01G151900 chr2A 95.178 1887 51 14 927 2800 77537408 77539267 0.000000e+00 2944.0
13 TraesCS2B01G151900 chr6A 85.794 1077 149 4 3319 4394 614162878 614161805 0.000000e+00 1138.0
14 TraesCS2B01G151900 chr6A 82.119 302 48 3 1833 2134 614164789 614164494 2.490000e-63 254.0
15 TraesCS2B01G151900 chr6A 81.092 238 33 6 1094 1325 614165729 614165498 4.290000e-41 180.0
16 TraesCS2B01G151900 chr6D 85.821 1072 148 4 3312 4382 468057343 468056275 0.000000e+00 1134.0
17 TraesCS2B01G151900 chr6D 85.701 1077 150 4 3319 4394 468096688 468095615 0.000000e+00 1133.0
18 TraesCS2B01G151900 chr6D 85.582 1082 150 6 3312 4391 468168812 468167735 0.000000e+00 1129.0
19 TraesCS2B01G151900 chr6D 82.263 654 105 7 1 644 393928156 393927504 6.100000e-154 555.0
20 TraesCS2B01G151900 chr6D 78.971 680 119 14 3 665 409334423 409335095 4.950000e-120 442.0
21 TraesCS2B01G151900 chr6D 84.437 302 41 3 1833 2134 468059034 468058739 5.280000e-75 292.0
22 TraesCS2B01G151900 chr6D 77.056 462 95 8 1677 2134 468152487 468152033 6.920000e-64 255.0
23 TraesCS2B01G151900 chr6D 80.887 293 49 5 1094 1382 468171302 468171013 1.950000e-54 224.0
24 TraesCS2B01G151900 chr6D 78.730 315 51 10 1057 1363 468060797 468060491 4.260000e-46 196.0
25 TraesCS2B01G151900 chr6D 83.750 160 24 2 1175 1333 29769076 29769234 3.360000e-32 150.0
26 TraesCS2B01G151900 chr6D 75.232 323 70 10 1818 2135 1428984 1428667 1.560000e-30 145.0
27 TraesCS2B01G151900 chr6D 78.333 240 34 7 1113 1352 468153201 468152980 7.270000e-29 139.0
28 TraesCS2B01G151900 chr6D 78.065 155 24 6 2279 2431 34950638 34950492 7.430000e-14 89.8
29 TraesCS2B01G151900 chrUn 85.087 1093 153 8 3310 4399 346081763 346080678 0.000000e+00 1107.0
30 TraesCS2B01G151900 chrUn 85.714 1029 142 5 3374 4399 310899428 310900454 0.000000e+00 1081.0
31 TraesCS2B01G151900 chrUn 77.056 462 95 8 1677 2134 216381723 216382177 6.920000e-64 255.0
32 TraesCS2B01G151900 chrUn 74.958 591 127 13 1556 2134 211920601 211921182 8.960000e-63 252.0
33 TraesCS2B01G151900 chrUn 80.417 240 38 5 1113 1352 216381000 216381230 1.990000e-39 174.0
34 TraesCS2B01G151900 chrUn 76.038 313 68 5 1828 2135 51444015 51444325 7.220000e-34 156.0
35 TraesCS2B01G151900 chr6B 84.963 1084 158 5 3319 4399 714340767 714339686 0.000000e+00 1094.0
36 TraesCS2B01G151900 chr6B 74.156 770 148 32 1677 2435 714335942 714335213 6.870000e-69 272.0
37 TraesCS2B01G151900 chr6B 74.916 594 128 13 1556 2137 714409475 714408891 8.960000e-63 252.0
38 TraesCS2B01G151900 chr6B 82.128 235 33 5 1118 1352 714336660 714336435 5.510000e-45 193.0
39 TraesCS2B01G151900 chr5D 82.234 546 84 11 74 614 84826398 84826935 4.920000e-125 459.0
40 TraesCS2B01G151900 chr7D 81.734 542 94 5 76 614 98984895 98985434 1.060000e-121 448.0
41 TraesCS2B01G151900 chr1A 96.629 267 9 0 5120 5386 266881087 266880821 1.380000e-120 444.0
42 TraesCS2B01G151900 chr1A 95.880 267 11 0 5120 5386 382739579 382739313 2.980000e-117 433.0
43 TraesCS2B01G151900 chr7B 79.167 624 113 12 27 644 470525537 470526149 3.000000e-112 416.0
44 TraesCS2B01G151900 chr7B 92.884 267 19 0 5120 5386 105021696 105021962 6.540000e-104 388.0
45 TraesCS2B01G151900 chr7B 96.237 186 5 2 702 885 15945318 15945133 2.440000e-78 303.0
46 TraesCS2B01G151900 chr7B 96.237 186 5 2 702 885 15945774 15945589 2.440000e-78 303.0
47 TraesCS2B01G151900 chr7B 96.216 185 5 2 702 885 15944946 15944763 8.770000e-78 302.0
48 TraesCS2B01G151900 chr7B 96.216 185 5 2 702 885 15945131 15944948 8.770000e-78 302.0
49 TraesCS2B01G151900 chr7B 94.565 184 8 2 700 881 4396356 4396173 3.180000e-72 283.0
50 TraesCS2B01G151900 chr7B 94.565 184 9 1 703 885 15945959 15945776 3.180000e-72 283.0
51 TraesCS2B01G151900 chr3B 94.086 186 9 2 699 882 736670496 736670681 1.140000e-71 281.0
52 TraesCS2B01G151900 chr3A 93.548 186 10 2 699 882 12465770 12465955 5.310000e-70 276.0
53 TraesCS2B01G151900 chr5B 82.036 167 28 2 1175 1340 623167152 623167317 2.020000e-29 141.0
54 TraesCS2B01G151900 chr1B 81.208 149 26 2 2287 2434 22823894 22823747 9.480000e-23 119.0
55 TraesCS2B01G151900 chr1D 76.617 201 43 3 1936 2135 2461404 2461207 2.050000e-19 108.0
56 TraesCS2B01G151900 chr1D 73.667 300 68 9 1839 2136 5422297 5422587 7.380000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G151900 chr2B 118628470 118633855 5385 False 9947.000000 9947 100.000000 1 5386 1 chr2B.!!$F1 5385
1 TraesCS2B01G151900 chr2B 764508435 764509047 612 False 438.000000 438 79.741000 29 639 1 chr2B.!!$F3 610
2 TraesCS2B01G151900 chr2D 76868365 76875198 6833 False 1431.460000 4039 93.075200 29 5109 5 chr2D.!!$F3 5080
3 TraesCS2B01G151900 chr2D 34986846 34987417 571 False 508.000000 508 82.842000 30 602 1 chr2D.!!$F1 572
4 TraesCS2B01G151900 chr2D 88403953 88404579 626 False 459.000000 459 80.286000 1 614 1 chr2D.!!$F2 613
5 TraesCS2B01G151900 chr2A 77537408 77541475 4067 False 3189.000000 3434 94.997500 927 5109 2 chr2A.!!$F1 4182
6 TraesCS2B01G151900 chr6A 614161805 614165729 3924 True 524.000000 1138 83.001667 1094 4394 3 chr6A.!!$R1 3300
7 TraesCS2B01G151900 chr6D 468095615 468096688 1073 True 1133.000000 1133 85.701000 3319 4394 1 chr6D.!!$R4 1075
8 TraesCS2B01G151900 chr6D 468167735 468171302 3567 True 676.500000 1129 83.234500 1094 4391 2 chr6D.!!$R7 3297
9 TraesCS2B01G151900 chr6D 393927504 393928156 652 True 555.000000 555 82.263000 1 644 1 chr6D.!!$R3 643
10 TraesCS2B01G151900 chr6D 468056275 468060797 4522 True 540.666667 1134 82.996000 1057 4382 3 chr6D.!!$R5 3325
11 TraesCS2B01G151900 chr6D 409334423 409335095 672 False 442.000000 442 78.971000 3 665 1 chr6D.!!$F2 662
12 TraesCS2B01G151900 chrUn 346080678 346081763 1085 True 1107.000000 1107 85.087000 3310 4399 1 chrUn.!!$R1 1089
13 TraesCS2B01G151900 chrUn 310899428 310900454 1026 False 1081.000000 1081 85.714000 3374 4399 1 chrUn.!!$F3 1025
14 TraesCS2B01G151900 chrUn 211920601 211921182 581 False 252.000000 252 74.958000 1556 2134 1 chrUn.!!$F2 578
15 TraesCS2B01G151900 chrUn 216381000 216382177 1177 False 214.500000 255 78.736500 1113 2134 2 chrUn.!!$F4 1021
16 TraesCS2B01G151900 chr6B 714335213 714340767 5554 True 519.666667 1094 80.415667 1118 4399 3 chr6B.!!$R2 3281
17 TraesCS2B01G151900 chr6B 714408891 714409475 584 True 252.000000 252 74.916000 1556 2137 1 chr6B.!!$R1 581
18 TraesCS2B01G151900 chr5D 84826398 84826935 537 False 459.000000 459 82.234000 74 614 1 chr5D.!!$F1 540
19 TraesCS2B01G151900 chr7D 98984895 98985434 539 False 448.000000 448 81.734000 76 614 1 chr7D.!!$F1 538
20 TraesCS2B01G151900 chr7B 470525537 470526149 612 False 416.000000 416 79.167000 27 644 1 chr7B.!!$F2 617
21 TraesCS2B01G151900 chr7B 15944763 15945959 1196 True 298.600000 303 95.894200 702 885 5 chr7B.!!$R2 183


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 676 0.036164 TTTCATGACAGTGACCGGGG 59.964 55.000 6.32 0.00 0.00 5.73 F
808 2620 0.324645 CCCCACCCCCTGAAAATCAG 60.325 60.000 0.32 0.32 43.91 2.90 F
2134 4993 0.751277 CGCCAATGGATGCCAAGGTA 60.751 55.000 2.05 0.00 36.95 3.08 F
2704 5904 2.040012 CCTCTGGCCTCTGCATCATTAT 59.960 50.000 3.32 0.00 40.13 1.28 F
2780 6377 2.090775 AGGTGGATGGGGAAACAAACTT 60.091 45.455 0.00 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 4935 0.675633 AATGTTCCAAGCACCTGCAC 59.324 50.000 0.00 0.00 45.16 4.57 R
2617 5817 2.950990 AGGCGATAGATATTCCCCCT 57.049 50.000 0.00 0.00 39.76 4.79 R
3097 6878 1.916181 ACCCAGAACATCCGAGGATTT 59.084 47.619 1.12 1.16 31.62 2.17 R
3834 8050 2.186826 GCACACCCAAGTTGAGCGT 61.187 57.895 3.87 0.00 0.00 5.07 R
4713 10757 1.644509 AGGAGGGAAATTGCAAACCC 58.355 50.000 23.44 23.44 42.36 4.11 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 52 2.809861 CTTCCGCTGCCTCACATGGT 62.810 60.000 0.00 0.00 0.00 3.55
55 62 2.281414 CACATGGTGGGCACGTCA 60.281 61.111 0.00 0.00 0.00 4.35
71 78 3.974401 CACGTCATGTCATGTTTTTGTCC 59.026 43.478 12.54 0.00 0.00 4.02
105 112 4.254709 TGTCCTGCTGCTTGGCGT 62.255 61.111 0.00 0.00 34.52 5.68
368 376 2.625617 GGATCTGGAGGTGAAGGACTCT 60.626 54.545 0.00 0.00 34.22 3.24
379 387 1.260538 AAGGACTCTGATCCGCTGCA 61.261 55.000 0.00 0.00 44.22 4.41
429 437 4.408821 GGTGAGCATGGGTGGCGA 62.409 66.667 0.00 0.00 36.08 5.54
436 444 2.938798 ATGGGTGGCGAAGGGGAA 60.939 61.111 0.00 0.00 0.00 3.97
463 471 2.912956 TGAAGTGGCTAGGATTTGGTCT 59.087 45.455 0.00 0.00 0.00 3.85
571 580 2.092646 TGTACGCCTCATATTTGGCCTT 60.093 45.455 3.32 0.00 45.90 4.35
582 597 3.979501 ATTTGGCCTTGATATGAGGGT 57.020 42.857 3.32 0.00 34.75 4.34
583 598 2.734755 TTGGCCTTGATATGAGGGTG 57.265 50.000 3.32 0.00 34.75 4.61
584 599 0.183492 TGGCCTTGATATGAGGGTGC 59.817 55.000 3.32 0.00 34.75 5.01
588 605 1.134098 CCTTGATATGAGGGTGCCGTT 60.134 52.381 0.00 0.00 0.00 4.44
591 608 2.673258 TGATATGAGGGTGCCGTTAGA 58.327 47.619 0.00 0.00 0.00 2.10
627 644 2.031919 TTTGCGACGCCCATCTGT 59.968 55.556 18.69 0.00 0.00 3.41
654 676 0.036164 TTTCATGACAGTGACCGGGG 59.964 55.000 6.32 0.00 0.00 5.73
696 2508 2.190578 GCCCGGCTGTAGATGCTT 59.809 61.111 0.71 0.00 0.00 3.91
701 2513 2.549754 CCCGGCTGTAGATGCTTTTATG 59.450 50.000 0.00 0.00 0.00 1.90
703 2515 3.466836 CGGCTGTAGATGCTTTTATGGA 58.533 45.455 0.00 0.00 0.00 3.41
705 2517 4.199310 GGCTGTAGATGCTTTTATGGACA 58.801 43.478 0.00 0.00 0.00 4.02
758 2570 5.075493 ACCTTACGAAGAGACTAAGTTGGA 58.925 41.667 0.00 0.00 0.00 3.53
759 2571 5.183522 ACCTTACGAAGAGACTAAGTTGGAG 59.816 44.000 0.00 0.00 0.00 3.86
760 2572 5.415077 CCTTACGAAGAGACTAAGTTGGAGA 59.585 44.000 0.00 0.00 0.00 3.71
761 2573 6.095720 CCTTACGAAGAGACTAAGTTGGAGAT 59.904 42.308 0.00 0.00 0.00 2.75
762 2574 7.282675 CCTTACGAAGAGACTAAGTTGGAGATA 59.717 40.741 0.00 0.00 0.00 1.98
763 2575 8.749026 TTACGAAGAGACTAAGTTGGAGATAT 57.251 34.615 0.00 0.00 0.00 1.63
764 2576 7.648039 ACGAAGAGACTAAGTTGGAGATATT 57.352 36.000 0.00 0.00 0.00 1.28
765 2577 8.068892 ACGAAGAGACTAAGTTGGAGATATTT 57.931 34.615 0.00 0.00 0.00 1.40
766 2578 7.976734 ACGAAGAGACTAAGTTGGAGATATTTG 59.023 37.037 0.00 0.00 0.00 2.32
767 2579 8.191446 CGAAGAGACTAAGTTGGAGATATTTGA 58.809 37.037 0.00 0.00 0.00 2.69
770 2582 9.829507 AGAGACTAAGTTGGAGATATTTGATTG 57.170 33.333 0.00 0.00 0.00 2.67
771 2583 8.970859 AGACTAAGTTGGAGATATTTGATTGG 57.029 34.615 0.00 0.00 0.00 3.16
772 2584 8.772250 AGACTAAGTTGGAGATATTTGATTGGA 58.228 33.333 0.00 0.00 0.00 3.53
773 2585 9.396022 GACTAAGTTGGAGATATTTGATTGGAA 57.604 33.333 0.00 0.00 0.00 3.53
774 2586 9.753674 ACTAAGTTGGAGATATTTGATTGGAAA 57.246 29.630 0.00 0.00 0.00 3.13
804 2616 3.922364 GGCCCCACCCCCTGAAAA 61.922 66.667 0.00 0.00 0.00 2.29
805 2617 2.449777 GCCCCACCCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
806 2618 1.685765 GCCCCACCCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
807 2619 1.780327 CCCCACCCCCTGAAAATCA 59.220 57.895 0.00 0.00 0.00 2.57
808 2620 0.324645 CCCCACCCCCTGAAAATCAG 60.325 60.000 0.32 0.32 43.91 2.90
827 2639 3.307379 GGGGGCTGATTAGTTAGCG 57.693 57.895 0.00 0.00 40.78 4.26
828 2640 0.756903 GGGGGCTGATTAGTTAGCGA 59.243 55.000 0.00 0.00 40.78 4.93
829 2641 1.348036 GGGGGCTGATTAGTTAGCGAT 59.652 52.381 0.00 0.00 40.78 4.58
830 2642 2.417719 GGGGCTGATTAGTTAGCGATG 58.582 52.381 0.00 0.00 40.78 3.84
831 2643 2.417719 GGGCTGATTAGTTAGCGATGG 58.582 52.381 0.00 0.00 40.78 3.51
832 2644 2.037251 GGGCTGATTAGTTAGCGATGGA 59.963 50.000 0.00 0.00 40.78 3.41
833 2645 3.494398 GGGCTGATTAGTTAGCGATGGAA 60.494 47.826 0.00 0.00 40.78 3.53
834 2646 3.743396 GGCTGATTAGTTAGCGATGGAAG 59.257 47.826 0.00 0.00 40.78 3.46
835 2647 3.743396 GCTGATTAGTTAGCGATGGAAGG 59.257 47.826 0.00 0.00 0.00 3.46
836 2648 4.740934 GCTGATTAGTTAGCGATGGAAGGT 60.741 45.833 0.00 0.00 0.00 3.50
837 2649 5.353394 TGATTAGTTAGCGATGGAAGGTT 57.647 39.130 0.00 0.00 0.00 3.50
838 2650 5.741011 TGATTAGTTAGCGATGGAAGGTTT 58.259 37.500 0.00 0.00 0.00 3.27
839 2651 6.880484 TGATTAGTTAGCGATGGAAGGTTTA 58.120 36.000 0.00 0.00 0.00 2.01
840 2652 6.759827 TGATTAGTTAGCGATGGAAGGTTTAC 59.240 38.462 0.00 0.00 0.00 2.01
841 2653 3.518590 AGTTAGCGATGGAAGGTTTACG 58.481 45.455 0.00 0.00 0.00 3.18
842 2654 3.056322 AGTTAGCGATGGAAGGTTTACGT 60.056 43.478 0.00 0.00 0.00 3.57
843 2655 4.158394 AGTTAGCGATGGAAGGTTTACGTA 59.842 41.667 0.00 0.00 0.00 3.57
844 2656 3.160777 AGCGATGGAAGGTTTACGTAG 57.839 47.619 0.00 0.00 0.00 3.51
845 2657 1.591619 GCGATGGAAGGTTTACGTAGC 59.408 52.381 0.00 0.00 0.00 3.58
846 2658 2.737679 GCGATGGAAGGTTTACGTAGCT 60.738 50.000 0.00 0.00 0.00 3.32
847 2659 3.518590 CGATGGAAGGTTTACGTAGCTT 58.481 45.455 2.53 2.53 38.48 3.74
848 2660 3.930848 CGATGGAAGGTTTACGTAGCTTT 59.069 43.478 4.41 1.05 36.09 3.51
849 2661 4.390909 CGATGGAAGGTTTACGTAGCTTTT 59.609 41.667 4.41 0.00 36.09 2.27
850 2662 5.445540 CGATGGAAGGTTTACGTAGCTTTTC 60.446 44.000 4.41 4.40 36.09 2.29
851 2663 3.742369 TGGAAGGTTTACGTAGCTTTTCG 59.258 43.478 4.41 0.00 36.09 3.46
852 2664 3.742882 GGAAGGTTTACGTAGCTTTTCGT 59.257 43.478 13.77 13.77 42.82 3.85
853 2665 4.923281 GGAAGGTTTACGTAGCTTTTCGTA 59.077 41.667 12.17 12.17 40.70 3.43
854 2666 5.405269 GGAAGGTTTACGTAGCTTTTCGTAA 59.595 40.000 19.48 19.48 46.02 3.18
867 2679 5.385396 CTTTTCGTAAAGCCATACGTAGG 57.615 43.478 15.80 0.00 46.57 3.18
868 2680 4.454728 TTTCGTAAAGCCATACGTAGGT 57.545 40.909 15.80 0.00 46.57 3.08
869 2681 3.698029 TCGTAAAGCCATACGTAGGTC 57.302 47.619 15.80 0.00 46.57 3.85
870 2682 3.282021 TCGTAAAGCCATACGTAGGTCT 58.718 45.455 15.80 0.00 46.57 3.85
871 2683 4.450976 TCGTAAAGCCATACGTAGGTCTA 58.549 43.478 15.80 0.00 46.57 2.59
872 2684 4.512944 TCGTAAAGCCATACGTAGGTCTAG 59.487 45.833 15.80 0.00 46.57 2.43
873 2685 3.729862 AAAGCCATACGTAGGTCTAGC 57.270 47.619 6.48 2.40 0.00 3.42
874 2686 2.359981 AGCCATACGTAGGTCTAGCA 57.640 50.000 6.48 0.00 0.00 3.49
875 2687 2.877866 AGCCATACGTAGGTCTAGCAT 58.122 47.619 6.48 0.00 0.00 3.79
876 2688 3.231818 AGCCATACGTAGGTCTAGCATT 58.768 45.455 6.48 0.00 0.00 3.56
877 2689 3.641906 AGCCATACGTAGGTCTAGCATTT 59.358 43.478 6.48 0.00 0.00 2.32
878 2690 4.101119 AGCCATACGTAGGTCTAGCATTTT 59.899 41.667 6.48 0.00 0.00 1.82
879 2691 4.814771 GCCATACGTAGGTCTAGCATTTTT 59.185 41.667 6.48 0.00 0.00 1.94
880 2692 5.277345 GCCATACGTAGGTCTAGCATTTTTG 60.277 44.000 6.48 0.00 0.00 2.44
881 2693 5.815740 CCATACGTAGGTCTAGCATTTTTGT 59.184 40.000 6.48 0.00 0.00 2.83
882 2694 6.238103 CCATACGTAGGTCTAGCATTTTTGTG 60.238 42.308 6.48 0.00 0.00 3.33
883 2695 3.435671 ACGTAGGTCTAGCATTTTTGTGC 59.564 43.478 0.00 0.00 45.38 4.57
902 2714 3.537793 GCTTTTATAGCCCGTATGCAC 57.462 47.619 0.00 0.00 44.48 4.57
903 2715 2.096417 GCTTTTATAGCCCGTATGCACG 60.096 50.000 0.00 0.00 44.48 5.34
915 2727 3.168193 CGTATGCACGGAATTTTGTTCC 58.832 45.455 0.00 0.00 44.59 3.62
916 2728 2.741759 ATGCACGGAATTTTGTTCCC 57.258 45.000 0.00 0.00 35.17 3.97
917 2729 1.403814 TGCACGGAATTTTGTTCCCA 58.596 45.000 1.50 0.00 35.17 4.37
918 2730 1.967066 TGCACGGAATTTTGTTCCCAT 59.033 42.857 1.50 0.00 35.17 4.00
919 2731 3.157881 TGCACGGAATTTTGTTCCCATA 58.842 40.909 1.50 0.00 35.17 2.74
920 2732 3.766591 TGCACGGAATTTTGTTCCCATAT 59.233 39.130 1.50 0.00 35.17 1.78
921 2733 4.221703 TGCACGGAATTTTGTTCCCATATT 59.778 37.500 1.50 0.00 35.17 1.28
922 2734 5.175127 GCACGGAATTTTGTTCCCATATTT 58.825 37.500 1.50 0.00 35.17 1.40
923 2735 5.290885 GCACGGAATTTTGTTCCCATATTTC 59.709 40.000 1.50 0.00 35.17 2.17
924 2736 5.810074 CACGGAATTTTGTTCCCATATTTCC 59.190 40.000 1.50 0.00 35.17 3.13
925 2737 5.105106 ACGGAATTTTGTTCCCATATTTCCC 60.105 40.000 1.50 0.00 32.74 3.97
936 2748 6.260700 TCCCATATTTCCCCATATATTCGG 57.739 41.667 0.00 0.00 0.00 4.30
979 2791 2.180204 CACCCGCCGGAGCTTAATG 61.180 63.158 5.05 0.00 36.60 1.90
980 2792 2.363975 ACCCGCCGGAGCTTAATGA 61.364 57.895 5.05 0.00 36.60 2.57
981 2793 1.887707 CCCGCCGGAGCTTAATGAC 60.888 63.158 5.05 0.00 36.60 3.06
1008 2820 3.378512 AGGAGTAATCTGCATGAGTGGA 58.621 45.455 0.00 0.00 34.40 4.02
1017 2829 3.132160 CTGCATGAGTGGAATAGAGCTG 58.868 50.000 0.00 0.00 0.00 4.24
1090 2902 3.012560 CGAAGCTCCCAATCCCATC 57.987 57.895 0.00 0.00 0.00 3.51
1168 2992 2.110578 TGATCTTACAGGCTGCTGCTA 58.889 47.619 15.89 0.00 39.59 3.49
1537 4362 1.598130 GTCGCCAAGTGCCAGAACT 60.598 57.895 0.00 0.00 36.24 3.01
2134 4993 0.751277 CGCCAATGGATGCCAAGGTA 60.751 55.000 2.05 0.00 36.95 3.08
2155 5023 8.703378 AGGTATACTAAGCCTTAATTCGTACT 57.297 34.615 2.25 0.00 0.00 2.73
2193 5061 8.608844 TTACTCCAGATCTCAAACTTTTCTTC 57.391 34.615 0.00 0.00 0.00 2.87
2200 5068 8.186821 CAGATCTCAAACTTTTCTTCTTGTTGT 58.813 33.333 0.00 0.00 0.00 3.32
2215 5083 5.577835 TCTTGTTGTGAAAACCAGATTTCG 58.422 37.500 0.00 0.00 41.24 3.46
2437 5466 5.183140 GTGATTGTGGGTAAGCACAAATACT 59.817 40.000 0.00 0.00 44.12 2.12
2459 5488 2.607635 ACATCGCACCACATTAATCGAC 59.392 45.455 0.00 0.00 0.00 4.20
2466 5495 4.630069 GCACCACATTAATCGACTACAACT 59.370 41.667 0.00 0.00 0.00 3.16
2617 5817 4.562767 TGAGTCCCATTAGCCCATTACTA 58.437 43.478 0.00 0.00 0.00 1.82
2626 5826 3.666975 AGCCCATTACTAGGGGGAATA 57.333 47.619 13.39 0.00 45.80 1.75
2661 5861 3.883489 GGGGATTTATATGCGGGCTATTC 59.117 47.826 0.00 0.00 0.00 1.75
2704 5904 2.040012 CCTCTGGCCTCTGCATCATTAT 59.960 50.000 3.32 0.00 40.13 1.28
2780 6377 2.090775 AGGTGGATGGGGAAACAAACTT 60.091 45.455 0.00 0.00 0.00 2.66
2826 6423 9.844790 TGATTCACATGATTATGAAAACTTGAC 57.155 29.630 4.20 0.00 38.29 3.18
3032 6812 7.094205 ACACAGATGACCAACATAGGAAAAATC 60.094 37.037 0.00 0.00 39.56 2.17
3036 6816 5.016173 TGACCAACATAGGAAAAATCCCTG 58.984 41.667 0.00 0.00 35.30 4.45
3097 6878 2.979678 AGTTGAAGAGGCCCTTACAAGA 59.020 45.455 0.00 0.00 34.68 3.02
3124 6905 3.081061 TCGGATGTTCTGGGTGAATTTG 58.919 45.455 0.00 0.00 36.99 2.32
3143 6924 2.771089 TGTTTGGCTTCTACTCAGCTG 58.229 47.619 7.63 7.63 37.43 4.24
3245 7113 7.557724 TGGTTTACATCGTCCTTGATAACATA 58.442 34.615 0.00 0.00 0.00 2.29
3248 7116 7.652300 TTACATCGTCCTTGATAACATATGC 57.348 36.000 1.58 0.00 0.00 3.14
3425 7640 8.793592 GGTGGAATAGGTGGTATTTTTATCATC 58.206 37.037 0.00 0.00 30.93 2.92
3834 8050 2.045561 TCACGGCAAAAAGAAGGTGA 57.954 45.000 0.00 0.00 32.51 4.02
3867 8083 3.685756 GGGTGTGCGTTTAAGTATTGCTA 59.314 43.478 0.00 0.00 0.00 3.49
4079 8295 6.716934 ATCGATCCAGTGTATCTACAAACT 57.283 37.500 0.00 0.00 38.04 2.66
4489 8744 2.136026 AGGAACAGGGAAGGTTTCACT 58.864 47.619 0.00 0.00 46.45 3.41
4888 11121 6.942163 TGACATTTCCCCCAATTTTTGATA 57.058 33.333 0.00 0.00 0.00 2.15
4968 11706 9.932699 CTCTAATCTTATGCTTGTGAGAATTTG 57.067 33.333 0.00 0.00 0.00 2.32
4977 11715 4.913924 GCTTGTGAGAATTTGTAAGCAGTG 59.086 41.667 0.00 0.00 40.02 3.66
4987 11725 6.803154 ATTTGTAAGCAGTGGACTAGAAAC 57.197 37.500 0.00 0.00 0.00 2.78
5109 12048 2.737252 CGAGACAGGGAAACAAGCTTAC 59.263 50.000 0.00 0.00 0.00 2.34
5110 12049 3.075148 GAGACAGGGAAACAAGCTTACC 58.925 50.000 0.00 0.50 0.00 2.85
5114 12053 3.425162 AGGGAAACAAGCTTACCTGAG 57.575 47.619 0.00 0.00 38.30 3.35
5115 12054 2.711547 AGGGAAACAAGCTTACCTGAGT 59.288 45.455 0.00 0.00 38.30 3.41
5116 12055 3.075148 GGGAAACAAGCTTACCTGAGTC 58.925 50.000 0.00 0.00 0.00 3.36
5117 12056 3.496160 GGGAAACAAGCTTACCTGAGTCA 60.496 47.826 0.00 0.00 0.00 3.41
5118 12057 4.327680 GGAAACAAGCTTACCTGAGTCAT 58.672 43.478 0.00 0.00 0.00 3.06
5120 12059 5.335191 GGAAACAAGCTTACCTGAGTCATTG 60.335 44.000 0.00 0.00 0.00 2.82
5121 12060 4.357918 ACAAGCTTACCTGAGTCATTGT 57.642 40.909 0.00 0.00 0.00 2.71
5123 12062 4.516698 ACAAGCTTACCTGAGTCATTGTTG 59.483 41.667 0.00 0.00 0.00 3.33
5124 12063 4.623932 AGCTTACCTGAGTCATTGTTGA 57.376 40.909 0.00 0.00 0.00 3.18
5125 12064 4.973168 AGCTTACCTGAGTCATTGTTGAA 58.027 39.130 0.00 0.00 32.48 2.69
5127 12066 4.378874 GCTTACCTGAGTCATTGTTGAAGC 60.379 45.833 11.57 11.57 32.48 3.86
5130 12069 4.973168 ACCTGAGTCATTGTTGAAGCTTA 58.027 39.130 0.00 0.00 32.48 3.09
5131 12070 5.376625 ACCTGAGTCATTGTTGAAGCTTAA 58.623 37.500 0.00 0.00 32.48 1.85
5132 12071 5.471456 ACCTGAGTCATTGTTGAAGCTTAAG 59.529 40.000 0.00 0.00 32.48 1.85
5133 12072 5.362556 TGAGTCATTGTTGAAGCTTAAGC 57.637 39.130 20.09 20.09 42.49 3.09
5146 12085 3.879932 GCTTAAGCTTGACGACAGTTT 57.120 42.857 20.38 0.00 38.21 2.66
5147 12086 3.800163 GCTTAAGCTTGACGACAGTTTC 58.200 45.455 20.38 0.00 38.21 2.78
5148 12087 3.661936 GCTTAAGCTTGACGACAGTTTCG 60.662 47.826 20.38 0.00 45.24 3.46
5163 12102 5.251999 CAGTTTCGTCAGTTAACTGTAGC 57.748 43.478 29.83 20.71 42.24 3.58
5164 12103 4.743151 CAGTTTCGTCAGTTAACTGTAGCA 59.257 41.667 29.83 15.70 42.24 3.49
5165 12104 4.743644 AGTTTCGTCAGTTAACTGTAGCAC 59.256 41.667 29.83 20.90 44.12 4.40
5167 12106 4.579454 TCGTCAGTTAACTGTAGCACTT 57.421 40.909 29.83 0.00 44.12 3.16
5168 12107 4.543692 TCGTCAGTTAACTGTAGCACTTC 58.456 43.478 29.83 13.07 44.12 3.01
5170 12109 4.383052 CGTCAGTTAACTGTAGCACTTCAG 59.617 45.833 29.83 8.79 44.12 3.02
5171 12110 4.686554 GTCAGTTAACTGTAGCACTTCAGG 59.313 45.833 29.83 5.14 44.12 3.86
5172 12111 3.433615 CAGTTAACTGTAGCACTTCAGGC 59.566 47.826 24.70 0.00 39.09 4.85
5173 12112 3.325135 AGTTAACTGTAGCACTTCAGGCT 59.675 43.478 7.48 0.00 45.18 4.58
5174 12113 2.175878 AACTGTAGCACTTCAGGCTG 57.824 50.000 8.58 8.58 42.62 4.85
5175 12114 1.051812 ACTGTAGCACTTCAGGCTGT 58.948 50.000 15.27 0.00 42.62 4.40
5176 12115 1.417890 ACTGTAGCACTTCAGGCTGTT 59.582 47.619 15.27 0.00 42.62 3.16
5179 12118 1.801178 GTAGCACTTCAGGCTGTTGTC 59.199 52.381 15.27 8.59 42.62 3.18
5181 12120 0.880278 GCACTTCAGGCTGTTGTCGA 60.880 55.000 15.27 0.00 0.00 4.20
5182 12121 0.861837 CACTTCAGGCTGTTGTCGAC 59.138 55.000 15.27 9.11 0.00 4.20
5192 12131 3.190337 GTTGTCGACAACGGCTAGT 57.810 52.632 37.33 0.00 45.44 2.57
5193 12132 1.494824 GTTGTCGACAACGGCTAGTT 58.505 50.000 37.33 0.00 45.44 2.24
5194 12133 1.454653 GTTGTCGACAACGGCTAGTTC 59.545 52.381 37.33 17.60 45.44 3.01
5195 12134 0.956633 TGTCGACAACGGCTAGTTCT 59.043 50.000 17.62 0.00 44.93 3.01
5196 12135 1.068748 TGTCGACAACGGCTAGTTCTC 60.069 52.381 17.62 0.00 44.93 2.87
5197 12136 1.199558 GTCGACAACGGCTAGTTCTCT 59.800 52.381 11.55 0.00 42.02 3.10
5199 12138 1.068472 CGACAACGGCTAGTTCTCTGT 60.068 52.381 0.00 0.00 42.02 3.41
5200 12139 2.597520 GACAACGGCTAGTTCTCTGTC 58.402 52.381 0.00 0.00 42.02 3.51
5201 12140 1.961394 ACAACGGCTAGTTCTCTGTCA 59.039 47.619 0.00 0.00 42.02 3.58
5202 12141 2.029828 ACAACGGCTAGTTCTCTGTCAG 60.030 50.000 0.00 0.00 42.02 3.51
5203 12142 1.912417 ACGGCTAGTTCTCTGTCAGT 58.088 50.000 0.00 0.00 0.00 3.41
5204 12143 2.240279 ACGGCTAGTTCTCTGTCAGTT 58.760 47.619 0.00 0.00 0.00 3.16
5205 12144 3.418995 ACGGCTAGTTCTCTGTCAGTTA 58.581 45.455 0.00 0.00 0.00 2.24
5206 12145 3.440872 ACGGCTAGTTCTCTGTCAGTTAG 59.559 47.826 0.00 0.00 0.00 2.34
5207 12146 3.732471 CGGCTAGTTCTCTGTCAGTTAGC 60.732 52.174 0.00 7.02 32.01 3.09
5208 12147 3.445805 GGCTAGTTCTCTGTCAGTTAGCT 59.554 47.826 0.00 0.00 32.72 3.32
5209 12148 4.420168 GCTAGTTCTCTGTCAGTTAGCTG 58.580 47.826 0.00 0.00 43.87 4.24
5210 12149 4.082463 GCTAGTTCTCTGTCAGTTAGCTGT 60.082 45.833 6.47 0.00 43.05 4.40
5212 12151 5.283457 AGTTCTCTGTCAGTTAGCTGTTT 57.717 39.130 6.47 0.00 43.05 2.83
5213 12152 6.406692 AGTTCTCTGTCAGTTAGCTGTTTA 57.593 37.500 6.47 0.00 43.05 2.01
5214 12153 6.451393 AGTTCTCTGTCAGTTAGCTGTTTAG 58.549 40.000 6.47 4.26 43.05 1.85
5215 12154 5.392767 TCTCTGTCAGTTAGCTGTTTAGG 57.607 43.478 6.47 0.00 43.05 2.69
5216 12155 5.077564 TCTCTGTCAGTTAGCTGTTTAGGA 58.922 41.667 6.47 0.00 43.05 2.94
5217 12156 5.717178 TCTCTGTCAGTTAGCTGTTTAGGAT 59.283 40.000 6.47 0.00 43.05 3.24
5219 12158 7.396339 TCTCTGTCAGTTAGCTGTTTAGGATTA 59.604 37.037 6.47 0.00 43.05 1.75
5221 12160 7.178628 TCTGTCAGTTAGCTGTTTAGGATTAGT 59.821 37.037 6.47 0.00 43.05 2.24
5223 12162 8.154856 TGTCAGTTAGCTGTTTAGGATTAGTTT 58.845 33.333 6.47 0.00 43.05 2.66
5224 12163 9.000486 GTCAGTTAGCTGTTTAGGATTAGTTTT 58.000 33.333 6.47 0.00 43.05 2.43
5225 12164 8.999431 TCAGTTAGCTGTTTAGGATTAGTTTTG 58.001 33.333 6.47 0.00 43.05 2.44
5226 12165 7.750903 CAGTTAGCTGTTTAGGATTAGTTTTGC 59.249 37.037 0.00 0.00 37.92 3.68
5227 12166 7.665974 AGTTAGCTGTTTAGGATTAGTTTTGCT 59.334 33.333 0.00 0.00 0.00 3.91
5228 12167 6.901081 AGCTGTTTAGGATTAGTTTTGCTT 57.099 33.333 0.00 0.00 0.00 3.91
5231 12170 6.803807 GCTGTTTAGGATTAGTTTTGCTTCAG 59.196 38.462 0.00 0.00 0.00 3.02
5232 12171 6.677913 TGTTTAGGATTAGTTTTGCTTCAGC 58.322 36.000 0.00 0.00 42.50 4.26
5246 12185 3.198068 GCTTCAGCAGAATAATCGGTCA 58.802 45.455 0.00 0.00 41.59 4.02
5247 12186 3.247173 GCTTCAGCAGAATAATCGGTCAG 59.753 47.826 0.00 0.00 41.59 3.51
5248 12187 2.826428 TCAGCAGAATAATCGGTCAGC 58.174 47.619 0.00 0.00 0.00 4.26
5249 12188 2.432146 TCAGCAGAATAATCGGTCAGCT 59.568 45.455 0.00 0.00 0.00 4.24
5250 12189 2.799412 CAGCAGAATAATCGGTCAGCTC 59.201 50.000 0.00 0.00 0.00 4.09
5251 12190 1.789464 GCAGAATAATCGGTCAGCTCG 59.211 52.381 0.00 0.00 0.00 5.03
5252 12191 2.799917 GCAGAATAATCGGTCAGCTCGT 60.800 50.000 0.00 0.00 0.00 4.18
5253 12192 3.448686 CAGAATAATCGGTCAGCTCGTT 58.551 45.455 0.00 0.00 0.00 3.85
5254 12193 3.243877 CAGAATAATCGGTCAGCTCGTTG 59.756 47.826 0.00 0.00 0.00 4.10
5255 12194 3.130516 AGAATAATCGGTCAGCTCGTTGA 59.869 43.478 0.00 0.00 0.00 3.18
5256 12195 2.561733 TAATCGGTCAGCTCGTTGAG 57.438 50.000 0.00 0.00 0.00 3.02
5258 12197 0.603569 ATCGGTCAGCTCGTTGAGTT 59.396 50.000 0.00 0.00 31.39 3.01
5259 12198 1.241165 TCGGTCAGCTCGTTGAGTTA 58.759 50.000 0.00 0.00 31.39 2.24
5260 12199 1.199327 TCGGTCAGCTCGTTGAGTTAG 59.801 52.381 0.00 0.00 31.39 2.34
5261 12200 1.068472 CGGTCAGCTCGTTGAGTTAGT 60.068 52.381 0.00 0.00 31.39 2.24
5262 12201 2.597520 GGTCAGCTCGTTGAGTTAGTC 58.402 52.381 0.00 0.00 31.39 2.59
5264 12203 1.878088 TCAGCTCGTTGAGTTAGTCGT 59.122 47.619 0.00 0.00 31.39 4.34
5265 12204 2.095869 TCAGCTCGTTGAGTTAGTCGTC 60.096 50.000 0.00 0.00 31.39 4.20
5267 12206 1.136141 GCTCGTTGAGTTAGTCGTCGA 60.136 52.381 0.00 0.00 33.77 4.20
5269 12208 1.136141 TCGTTGAGTTAGTCGTCGAGC 60.136 52.381 0.00 0.00 32.03 5.03
5271 12210 2.243407 GTTGAGTTAGTCGTCGAGCTG 58.757 52.381 0.00 0.00 0.00 4.24
5272 12211 1.804601 TGAGTTAGTCGTCGAGCTGA 58.195 50.000 0.00 0.00 0.00 4.26
5273 12212 2.357075 TGAGTTAGTCGTCGAGCTGAT 58.643 47.619 0.00 0.00 0.00 2.90
5274 12213 2.352034 TGAGTTAGTCGTCGAGCTGATC 59.648 50.000 0.00 0.00 0.00 2.92
5275 12214 1.671845 AGTTAGTCGTCGAGCTGATCC 59.328 52.381 0.00 0.00 0.00 3.36
5276 12215 1.400846 GTTAGTCGTCGAGCTGATCCA 59.599 52.381 0.00 0.00 0.00 3.41
5277 12216 1.300481 TAGTCGTCGAGCTGATCCAG 58.700 55.000 0.00 0.00 34.12 3.86
5278 12217 0.678366 AGTCGTCGAGCTGATCCAGT 60.678 55.000 0.00 0.00 33.43 4.00
5279 12218 0.171455 GTCGTCGAGCTGATCCAGTT 59.829 55.000 0.00 0.00 33.43 3.16
5282 12221 1.402259 CGTCGAGCTGATCCAGTTAGT 59.598 52.381 0.00 0.00 33.43 2.24
5284 12223 3.673594 CGTCGAGCTGATCCAGTTAGTTT 60.674 47.826 0.00 0.00 33.43 2.66
5285 12224 3.614616 GTCGAGCTGATCCAGTTAGTTTG 59.385 47.826 0.00 0.00 33.43 2.93
5286 12225 3.258372 TCGAGCTGATCCAGTTAGTTTGT 59.742 43.478 0.00 0.00 33.43 2.83
5287 12226 4.461431 TCGAGCTGATCCAGTTAGTTTGTA 59.539 41.667 0.00 0.00 33.43 2.41
5288 12227 4.800993 CGAGCTGATCCAGTTAGTTTGTAG 59.199 45.833 0.00 0.00 33.43 2.74
5289 12228 5.091261 AGCTGATCCAGTTAGTTTGTAGG 57.909 43.478 0.00 0.00 33.43 3.18
5290 12229 3.623510 GCTGATCCAGTTAGTTTGTAGGC 59.376 47.826 0.00 0.00 33.43 3.93
5292 12231 4.832248 TGATCCAGTTAGTTTGTAGGCTG 58.168 43.478 0.00 0.00 0.00 4.85
5293 12232 3.695830 TCCAGTTAGTTTGTAGGCTGG 57.304 47.619 0.00 0.00 43.37 4.85
5294 12233 2.976882 TCCAGTTAGTTTGTAGGCTGGT 59.023 45.455 0.00 0.00 42.77 4.00
5295 12234 3.074412 CCAGTTAGTTTGTAGGCTGGTG 58.926 50.000 0.00 0.00 38.80 4.17
5296 12235 3.244422 CCAGTTAGTTTGTAGGCTGGTGA 60.244 47.826 0.00 0.00 38.80 4.02
5297 12236 4.565652 CCAGTTAGTTTGTAGGCTGGTGAT 60.566 45.833 0.00 0.00 38.80 3.06
5298 12237 4.631813 CAGTTAGTTTGTAGGCTGGTGATC 59.368 45.833 0.00 0.00 0.00 2.92
5302 12241 1.557099 TTGTAGGCTGGTGATCGTCT 58.443 50.000 0.00 0.00 0.00 4.18
5305 12244 1.103803 TAGGCTGGTGATCGTCTGTC 58.896 55.000 0.00 0.00 0.00 3.51
5306 12245 1.153549 GGCTGGTGATCGTCTGTCC 60.154 63.158 0.00 0.00 0.00 4.02
5307 12246 1.517257 GCTGGTGATCGTCTGTCCG 60.517 63.158 0.00 0.00 0.00 4.79
5308 12247 1.883732 CTGGTGATCGTCTGTCCGT 59.116 57.895 0.00 0.00 0.00 4.69
5309 12248 0.456824 CTGGTGATCGTCTGTCCGTG 60.457 60.000 0.00 0.00 0.00 4.94
5311 12250 1.153823 GTGATCGTCTGTCCGTGGG 60.154 63.158 0.00 0.00 0.00 4.61
5313 12252 0.683179 TGATCGTCTGTCCGTGGGAT 60.683 55.000 0.00 0.00 32.73 3.85
5314 12253 0.249073 GATCGTCTGTCCGTGGGATG 60.249 60.000 0.00 0.00 32.73 3.51
5316 12255 2.125106 GTCTGTCCGTGGGATGGC 60.125 66.667 0.00 0.00 32.73 4.40
5317 12256 3.770040 TCTGTCCGTGGGATGGCG 61.770 66.667 0.00 0.00 32.73 5.69
5318 12257 4.082523 CTGTCCGTGGGATGGCGT 62.083 66.667 0.00 0.00 32.73 5.68
5319 12258 4.386951 TGTCCGTGGGATGGCGTG 62.387 66.667 0.00 0.00 32.73 5.34
5322 12261 4.838152 CCGTGGGATGGCGTGGAG 62.838 72.222 0.00 0.00 0.00 3.86
5323 12262 3.770040 CGTGGGATGGCGTGGAGA 61.770 66.667 0.00 0.00 0.00 3.71
5324 12263 2.911143 GTGGGATGGCGTGGAGAT 59.089 61.111 0.00 0.00 0.00 2.75
5325 12264 1.744320 CGTGGGATGGCGTGGAGATA 61.744 60.000 0.00 0.00 0.00 1.98
5326 12265 0.468226 GTGGGATGGCGTGGAGATAA 59.532 55.000 0.00 0.00 0.00 1.75
5327 12266 0.468226 TGGGATGGCGTGGAGATAAC 59.532 55.000 0.00 0.00 0.00 1.89
5328 12267 0.600255 GGGATGGCGTGGAGATAACG 60.600 60.000 0.00 0.00 43.81 3.18
5333 12272 4.777781 CGTGGAGATAACGCACGA 57.222 55.556 0.00 0.00 36.96 4.35
5334 12273 3.024423 CGTGGAGATAACGCACGAA 57.976 52.632 0.00 0.00 36.96 3.85
5336 12275 0.645868 GTGGAGATAACGCACGAAGC 59.354 55.000 0.00 0.00 40.87 3.86
5337 12276 0.245266 TGGAGATAACGCACGAAGCA 59.755 50.000 0.00 0.00 46.13 3.91
5338 12277 0.645868 GGAGATAACGCACGAAGCAC 59.354 55.000 0.00 0.00 46.13 4.40
5340 12279 1.076533 AGATAACGCACGAAGCACGG 61.077 55.000 0.00 0.00 46.13 4.94
5344 12283 4.505217 CGCACGAAGCACGGCATC 62.505 66.667 8.06 0.00 46.13 3.91
5351 12290 0.379669 GAAGCACGGCATCATCAAGG 59.620 55.000 0.00 0.00 0.00 3.61
5352 12291 1.033746 AAGCACGGCATCATCAAGGG 61.034 55.000 0.00 0.00 0.00 3.95
5353 12292 1.451927 GCACGGCATCATCAAGGGA 60.452 57.895 0.00 0.00 0.00 4.20
5354 12293 1.442526 GCACGGCATCATCAAGGGAG 61.443 60.000 0.00 0.00 0.00 4.30
5355 12294 0.107508 CACGGCATCATCAAGGGAGT 60.108 55.000 0.00 0.00 0.00 3.85
5356 12295 0.107508 ACGGCATCATCAAGGGAGTG 60.108 55.000 0.00 0.00 0.00 3.51
5357 12296 0.816825 CGGCATCATCAAGGGAGTGG 60.817 60.000 0.00 0.00 0.00 4.00
5358 12297 1.105759 GGCATCATCAAGGGAGTGGC 61.106 60.000 0.00 0.00 0.00 5.01
5359 12298 0.106819 GCATCATCAAGGGAGTGGCT 60.107 55.000 0.00 0.00 0.00 4.75
5360 12299 1.964552 CATCATCAAGGGAGTGGCTC 58.035 55.000 0.00 0.00 0.00 4.70
5362 12301 0.907486 TCATCAAGGGAGTGGCTCAG 59.093 55.000 0.00 0.00 31.08 3.35
5363 12302 0.747283 CATCAAGGGAGTGGCTCAGC 60.747 60.000 0.00 0.00 31.08 4.26
5364 12303 2.249413 ATCAAGGGAGTGGCTCAGCG 62.249 60.000 0.00 0.00 31.08 5.18
5365 12304 2.604686 AAGGGAGTGGCTCAGCGA 60.605 61.111 0.00 0.00 31.08 4.93
5367 12306 1.965754 AAGGGAGTGGCTCAGCGATC 61.966 60.000 0.00 0.00 31.08 3.69
5370 12309 1.875813 GAGTGGCTCAGCGATCGTG 60.876 63.158 17.81 13.42 0.00 4.35
5371 12310 2.887568 GTGGCTCAGCGATCGTGG 60.888 66.667 17.81 9.35 0.00 4.94
5373 12312 3.838271 GGCTCAGCGATCGTGGGA 61.838 66.667 17.81 10.72 0.00 4.37
5374 12313 2.419198 GCTCAGCGATCGTGGGAT 59.581 61.111 17.81 0.00 34.96 3.85
5375 12314 1.953138 GCTCAGCGATCGTGGGATG 60.953 63.158 17.81 8.31 31.51 3.51
5376 12315 1.300465 CTCAGCGATCGTGGGATGG 60.300 63.158 17.81 0.00 31.51 3.51
5383 12322 2.499205 TCGTGGGATGGCACGATC 59.501 61.111 0.00 0.00 46.91 3.69
5384 12323 2.186644 CGTGGGATGGCACGATCA 59.813 61.111 0.00 0.00 46.46 2.92
5385 12324 1.884464 CGTGGGATGGCACGATCAG 60.884 63.158 0.00 0.00 46.46 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 46 1.675310 CATGACGTGCCCACCATGT 60.675 57.895 0.00 0.00 46.14 3.21
45 52 0.250684 AACATGACATGACGTGCCCA 60.251 50.000 22.19 0.00 0.00 5.36
55 62 3.004315 GTCGTGGGACAAAAACATGACAT 59.996 43.478 0.00 0.00 45.67 3.06
71 78 2.668212 ACACCATTGGCGTCGTGG 60.668 61.111 9.45 9.45 38.96 4.94
105 112 2.112297 GCAACCCCTCCGTTGACA 59.888 61.111 5.67 0.00 44.88 3.58
379 387 3.140141 CCATTTCCGGCATGGCGT 61.140 61.111 35.39 17.99 34.98 5.68
429 437 2.819348 GCCACTTCACTTCATTCCCCTT 60.819 50.000 0.00 0.00 0.00 3.95
436 444 4.851639 AATCCTAGCCACTTCACTTCAT 57.148 40.909 0.00 0.00 0.00 2.57
463 471 1.198094 TTCTTCCCATCCACTCGCCA 61.198 55.000 0.00 0.00 0.00 5.69
571 580 2.364324 GTCTAACGGCACCCTCATATCA 59.636 50.000 0.00 0.00 0.00 2.15
622 639 7.765819 TCACTGTCATGAAATTTCGATACAGAT 59.234 33.333 31.91 21.48 37.22 2.90
627 644 5.290885 CGGTCACTGTCATGAAATTTCGATA 59.709 40.000 13.34 3.52 0.00 2.92
679 701 1.032114 AAAAGCATCTACAGCCGGGC 61.032 55.000 12.11 12.11 0.00 6.13
680 702 2.325583 TAAAAGCATCTACAGCCGGG 57.674 50.000 2.18 0.00 0.00 5.73
686 2498 4.094294 GCGTTGTCCATAAAAGCATCTACA 59.906 41.667 0.00 0.00 33.04 2.74
688 2500 4.513442 AGCGTTGTCCATAAAAGCATCTA 58.487 39.130 0.00 0.00 34.91 1.98
696 2508 3.688694 AGGTGTAGCGTTGTCCATAAA 57.311 42.857 0.00 0.00 0.00 1.40
701 2513 0.242017 ACGTAGGTGTAGCGTTGTCC 59.758 55.000 0.00 0.00 35.11 4.02
703 2515 3.641437 TTTACGTAGGTGTAGCGTTGT 57.359 42.857 0.00 0.00 39.64 3.32
705 2517 4.559153 ACAATTTACGTAGGTGTAGCGTT 58.441 39.130 0.00 0.00 39.64 4.84
775 2587 3.611542 GGGGCCCCCTCCCTTTTT 61.612 66.667 33.01 0.00 45.80 1.94
776 2588 4.980476 TGGGGCCCCCTCCCTTTT 62.980 66.667 38.81 0.00 45.70 2.27
787 2599 3.252585 ATTTTCAGGGGGTGGGGCC 62.253 63.158 0.00 0.00 0.00 5.80
788 2600 1.685765 GATTTTCAGGGGGTGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
789 2601 0.324645 CTGATTTTCAGGGGGTGGGG 60.325 60.000 0.00 0.00 40.71 4.96
790 2602 3.288099 CTGATTTTCAGGGGGTGGG 57.712 57.895 0.00 0.00 40.71 4.61
809 2621 0.756903 TCGCTAACTAATCAGCCCCC 59.243 55.000 0.00 0.00 34.15 5.40
810 2622 2.417719 CATCGCTAACTAATCAGCCCC 58.582 52.381 0.00 0.00 34.15 5.80
811 2623 2.037251 TCCATCGCTAACTAATCAGCCC 59.963 50.000 0.00 0.00 34.15 5.19
812 2624 3.386768 TCCATCGCTAACTAATCAGCC 57.613 47.619 0.00 0.00 34.15 4.85
813 2625 3.743396 CCTTCCATCGCTAACTAATCAGC 59.257 47.826 0.00 0.00 0.00 4.26
814 2626 4.950050 ACCTTCCATCGCTAACTAATCAG 58.050 43.478 0.00 0.00 0.00 2.90
815 2627 5.353394 AACCTTCCATCGCTAACTAATCA 57.647 39.130 0.00 0.00 0.00 2.57
816 2628 6.074463 CGTAAACCTTCCATCGCTAACTAATC 60.074 42.308 0.00 0.00 0.00 1.75
817 2629 5.751990 CGTAAACCTTCCATCGCTAACTAAT 59.248 40.000 0.00 0.00 0.00 1.73
818 2630 5.104374 CGTAAACCTTCCATCGCTAACTAA 58.896 41.667 0.00 0.00 0.00 2.24
819 2631 4.158394 ACGTAAACCTTCCATCGCTAACTA 59.842 41.667 0.00 0.00 0.00 2.24
820 2632 3.056322 ACGTAAACCTTCCATCGCTAACT 60.056 43.478 0.00 0.00 0.00 2.24
821 2633 3.256558 ACGTAAACCTTCCATCGCTAAC 58.743 45.455 0.00 0.00 0.00 2.34
822 2634 3.598019 ACGTAAACCTTCCATCGCTAA 57.402 42.857 0.00 0.00 0.00 3.09
823 2635 3.489738 GCTACGTAAACCTTCCATCGCTA 60.490 47.826 0.00 0.00 0.00 4.26
824 2636 2.737679 GCTACGTAAACCTTCCATCGCT 60.738 50.000 0.00 0.00 0.00 4.93
825 2637 1.591619 GCTACGTAAACCTTCCATCGC 59.408 52.381 0.00 0.00 0.00 4.58
826 2638 3.160777 AGCTACGTAAACCTTCCATCG 57.839 47.619 0.00 0.00 0.00 3.84
827 2639 5.445540 CGAAAAGCTACGTAAACCTTCCATC 60.446 44.000 0.00 0.46 0.00 3.51
828 2640 4.390909 CGAAAAGCTACGTAAACCTTCCAT 59.609 41.667 0.00 0.00 0.00 3.41
829 2641 3.742369 CGAAAAGCTACGTAAACCTTCCA 59.258 43.478 0.00 0.00 0.00 3.53
830 2642 3.742882 ACGAAAAGCTACGTAAACCTTCC 59.257 43.478 10.84 0.00 40.92 3.46
831 2643 4.979564 ACGAAAAGCTACGTAAACCTTC 57.020 40.909 10.84 0.00 40.92 3.46
845 2657 4.866486 ACCTACGTATGGCTTTACGAAAAG 59.134 41.667 21.49 15.63 46.02 2.27
846 2658 4.819769 ACCTACGTATGGCTTTACGAAAA 58.180 39.130 21.49 9.63 46.02 2.29
847 2659 4.158394 AGACCTACGTATGGCTTTACGAAA 59.842 41.667 21.49 11.41 46.02 3.46
848 2660 3.696051 AGACCTACGTATGGCTTTACGAA 59.304 43.478 21.49 0.00 46.02 3.85
849 2661 3.282021 AGACCTACGTATGGCTTTACGA 58.718 45.455 21.49 8.92 46.02 3.43
851 2663 4.037208 TGCTAGACCTACGTATGGCTTTAC 59.963 45.833 11.71 2.97 38.41 2.01
852 2664 4.209538 TGCTAGACCTACGTATGGCTTTA 58.790 43.478 11.71 0.00 38.41 1.85
853 2665 3.028850 TGCTAGACCTACGTATGGCTTT 58.971 45.455 11.71 0.00 38.41 3.51
854 2666 2.662866 TGCTAGACCTACGTATGGCTT 58.337 47.619 11.71 3.14 38.41 4.35
855 2667 2.359981 TGCTAGACCTACGTATGGCT 57.640 50.000 11.21 11.21 38.41 4.75
856 2668 3.662247 AATGCTAGACCTACGTATGGC 57.338 47.619 0.00 0.00 38.11 4.40
857 2669 5.815740 ACAAAAATGCTAGACCTACGTATGG 59.184 40.000 0.00 2.55 0.00 2.74
858 2670 6.705782 CACAAAAATGCTAGACCTACGTATG 58.294 40.000 0.00 0.00 0.00 2.39
859 2671 5.293569 GCACAAAAATGCTAGACCTACGTAT 59.706 40.000 0.00 0.00 42.62 3.06
860 2672 4.628333 GCACAAAAATGCTAGACCTACGTA 59.372 41.667 0.00 0.00 42.62 3.57
861 2673 3.435671 GCACAAAAATGCTAGACCTACGT 59.564 43.478 0.00 0.00 42.62 3.57
862 2674 4.003519 GCACAAAAATGCTAGACCTACG 57.996 45.455 0.00 0.00 42.62 3.51
881 2693 4.593147 CGTGCATACGGGCTATAAAAGCA 61.593 47.826 0.00 0.00 46.66 3.91
882 2694 2.096417 CGTGCATACGGGCTATAAAAGC 60.096 50.000 0.00 0.00 46.23 3.51
883 2695 3.788434 CGTGCATACGGGCTATAAAAG 57.212 47.619 0.00 0.00 46.23 2.27
894 2706 6.387972 TGGGAACAAAATTCCGTGCATACG 62.388 45.833 0.00 0.00 43.84 3.06
895 2707 3.057174 TGGGAACAAAATTCCGTGCATAC 60.057 43.478 0.00 0.00 39.46 2.39
896 2708 3.157881 TGGGAACAAAATTCCGTGCATA 58.842 40.909 0.00 0.00 39.46 3.14
897 2709 1.967066 TGGGAACAAAATTCCGTGCAT 59.033 42.857 0.00 0.00 39.46 3.96
898 2710 1.403814 TGGGAACAAAATTCCGTGCA 58.596 45.000 0.00 0.00 39.46 4.57
911 2723 6.546034 CCGAATATATGGGGAAATATGGGAAC 59.454 42.308 0.00 0.00 0.00 3.62
912 2724 6.354389 CCCGAATATATGGGGAAATATGGGAA 60.354 42.308 14.38 0.00 44.10 3.97
913 2725 5.133660 CCCGAATATATGGGGAAATATGGGA 59.866 44.000 14.38 0.00 44.10 4.37
914 2726 5.133660 TCCCGAATATATGGGGAAATATGGG 59.866 44.000 18.22 3.15 46.81 4.00
915 2727 6.260700 TCCCGAATATATGGGGAAATATGG 57.739 41.667 18.22 0.00 46.81 2.74
923 2735 1.066430 CCACGTCCCGAATATATGGGG 60.066 57.143 13.64 13.64 46.03 4.96
925 2737 3.006537 ACTTCCACGTCCCGAATATATGG 59.993 47.826 0.00 0.00 0.00 2.74
979 2791 2.950309 TGCAGATTACTCCTAGGTCGTC 59.050 50.000 9.08 1.84 0.00 4.20
980 2792 3.014304 TGCAGATTACTCCTAGGTCGT 57.986 47.619 9.08 9.96 0.00 4.34
981 2793 3.570125 TCATGCAGATTACTCCTAGGTCG 59.430 47.826 9.08 3.94 0.00 4.79
1036 2848 0.725117 GGTACGGTGTTGTATGCTGC 59.275 55.000 0.00 0.00 0.00 5.25
1080 2892 0.466922 GCTGGGAGTGATGGGATTGG 60.467 60.000 0.00 0.00 0.00 3.16
1090 2902 2.776370 ATTGGCAGTGGCTGGGAGTG 62.776 60.000 18.53 0.00 40.87 3.51
1168 2992 3.072944 GCTTCTCATCTTGTTCTGCAGT 58.927 45.455 14.67 0.00 0.00 4.40
2052 4911 4.371417 CCATGGGCAGCACCACCT 62.371 66.667 2.85 0.00 44.72 4.00
2076 4935 0.675633 AATGTTCCAAGCACCTGCAC 59.324 50.000 0.00 0.00 45.16 4.57
2193 5061 5.577835 TCGAAATCTGGTTTTCACAACAAG 58.422 37.500 0.00 0.00 35.73 3.16
2200 5068 5.845391 AAAGGTTCGAAATCTGGTTTTCA 57.155 34.783 0.00 0.00 35.73 2.69
2437 5466 3.799963 GTCGATTAATGTGGTGCGATGTA 59.200 43.478 0.00 0.00 0.00 2.29
2480 5510 3.092301 TGAGACATGTGTACTGCTAGCT 58.908 45.455 17.23 0.00 0.00 3.32
2617 5817 2.950990 AGGCGATAGATATTCCCCCT 57.049 50.000 0.00 0.00 39.76 4.79
2626 5826 7.527868 GCATATAAATCCCCATAGGCGATAGAT 60.528 40.741 0.00 0.00 39.76 1.98
2704 5904 7.336679 CACCTAAATCAAGATGGTTGTGTATCA 59.663 37.037 0.00 0.00 0.00 2.15
2780 6377 5.850557 TCAAAGAGGCTTTGAAATCACAA 57.149 34.783 17.45 0.00 35.69 3.33
2826 6423 8.805175 TGCATATAATCATACATTTTCCCCTTG 58.195 33.333 0.00 0.00 0.00 3.61
2849 6446 6.377712 TCATGTAGGATTCAAATGAACATGCA 59.622 34.615 15.43 10.05 35.39 3.96
3032 6812 2.707791 TGGAGCATAGAAATCCTCAGGG 59.292 50.000 0.00 0.00 34.04 4.45
3036 6816 7.401246 AGGAATTATGGAGCATAGAAATCCTC 58.599 38.462 0.00 0.00 34.04 3.71
3097 6878 1.916181 ACCCAGAACATCCGAGGATTT 59.084 47.619 1.12 1.16 31.62 2.17
3124 6905 2.739379 GACAGCTGAGTAGAAGCCAAAC 59.261 50.000 23.35 0.00 41.82 2.93
3143 6924 6.592607 TGAAGAACCACCTTTAATATGTCGAC 59.407 38.462 9.11 9.11 0.00 4.20
3200 7068 5.684704 ACCATCATACTTTATGGGTGAGTG 58.315 41.667 6.33 0.00 45.83 3.51
3425 7640 5.352284 AGAATAAGGAATGATATAGCCGCG 58.648 41.667 0.00 0.00 0.00 6.46
3834 8050 2.186826 GCACACCCAAGTTGAGCGT 61.187 57.895 3.87 0.00 0.00 5.07
3867 8083 3.207677 GAGCATCTGCCGATTCGAT 57.792 52.632 7.83 0.00 43.38 3.59
4079 8295 2.901839 ACTTTTCTCGGTTAGTAGGCCA 59.098 45.455 5.01 0.00 0.00 5.36
4590 10505 9.836864 GGAATAAAATAGAGGGAAATTGCAAAT 57.163 29.630 1.71 0.00 0.00 2.32
4632 10547 8.117988 ACCATATACGTGCTTTTTATACAAACG 58.882 33.333 0.00 0.00 0.00 3.60
4713 10757 1.644509 AGGAGGGAAATTGCAAACCC 58.355 50.000 23.44 23.44 42.36 4.11
4790 11007 6.648879 AGAATCCCGAACTGAAATGAAAAA 57.351 33.333 0.00 0.00 0.00 1.94
4888 11121 2.568509 CCTTGTTTCCCAGCAATGGATT 59.431 45.455 0.00 0.00 0.00 3.01
4968 11706 6.036191 GCTTATGTTTCTAGTCCACTGCTTAC 59.964 42.308 0.00 0.00 0.00 2.34
4977 11715 8.144478 TGATACTGATGCTTATGTTTCTAGTCC 58.856 37.037 0.00 0.00 0.00 3.85
4987 11725 6.713903 ACCCAGAAATGATACTGATGCTTATG 59.286 38.462 0.00 0.00 36.38 1.90
5034 11971 3.457234 TCTCGGATGGACAAAATCATCG 58.543 45.455 0.00 0.00 40.30 3.84
5095 12034 3.075148 GACTCAGGTAAGCTTGTTTCCC 58.925 50.000 9.86 1.12 0.00 3.97
5109 12048 5.618640 GCTTAAGCTTCAACAATGACTCAGG 60.619 44.000 20.38 0.00 34.61 3.86
5110 12049 5.388944 GCTTAAGCTTCAACAATGACTCAG 58.611 41.667 20.38 0.00 34.61 3.35
5127 12066 4.041240 CGAAACTGTCGTCAAGCTTAAG 57.959 45.455 0.00 0.00 45.09 1.85
5138 12077 4.356162 CAGTTAACTGACGAAACTGTCG 57.644 45.455 28.17 0.00 46.59 4.35
5142 12081 4.743644 GTGCTACAGTTAACTGACGAAACT 59.256 41.667 36.14 17.88 46.59 2.66
5144 12083 4.940463 AGTGCTACAGTTAACTGACGAAA 58.060 39.130 36.14 17.45 46.59 3.46
5145 12084 4.579454 AGTGCTACAGTTAACTGACGAA 57.421 40.909 36.14 20.35 46.59 3.85
5146 12085 4.037089 TGAAGTGCTACAGTTAACTGACGA 59.963 41.667 36.14 21.20 46.59 4.20
5147 12086 4.295870 TGAAGTGCTACAGTTAACTGACG 58.704 43.478 36.14 26.13 46.59 4.35
5148 12087 4.686554 CCTGAAGTGCTACAGTTAACTGAC 59.313 45.833 36.14 24.65 46.59 3.51
5150 12089 6.810833 CAGCCTGAAGTGCTACAGTTAACTG 61.811 48.000 29.76 29.76 42.61 3.16
5151 12090 3.325135 AGCCTGAAGTGCTACAGTTAACT 59.675 43.478 1.12 1.12 37.28 2.24
5153 12092 3.071023 ACAGCCTGAAGTGCTACAGTTAA 59.929 43.478 0.00 0.00 36.81 2.01
5154 12093 2.632996 ACAGCCTGAAGTGCTACAGTTA 59.367 45.455 0.00 0.00 36.81 2.24
5155 12094 1.417890 ACAGCCTGAAGTGCTACAGTT 59.582 47.619 0.00 0.00 36.81 3.16
5156 12095 1.051812 ACAGCCTGAAGTGCTACAGT 58.948 50.000 0.00 0.00 36.81 3.55
5157 12096 1.802960 CAACAGCCTGAAGTGCTACAG 59.197 52.381 0.00 0.00 36.81 2.74
5158 12097 1.140852 ACAACAGCCTGAAGTGCTACA 59.859 47.619 0.00 0.00 36.81 2.74
5160 12099 1.605457 CGACAACAGCCTGAAGTGCTA 60.605 52.381 0.00 0.00 36.81 3.49
5161 12100 0.882042 CGACAACAGCCTGAAGTGCT 60.882 55.000 0.00 0.00 40.41 4.40
5162 12101 0.880278 TCGACAACAGCCTGAAGTGC 60.880 55.000 0.00 0.00 0.00 4.40
5163 12102 0.861837 GTCGACAACAGCCTGAAGTG 59.138 55.000 11.55 0.00 0.00 3.16
5164 12103 0.464036 TGTCGACAACAGCCTGAAGT 59.536 50.000 17.62 0.00 32.81 3.01
5165 12104 1.581934 TTGTCGACAACAGCCTGAAG 58.418 50.000 26.53 0.00 39.58 3.02
5175 12114 1.338973 AGAACTAGCCGTTGTCGACAA 59.661 47.619 26.53 26.53 39.71 3.18
5176 12115 0.956633 AGAACTAGCCGTTGTCGACA 59.043 50.000 15.76 15.76 39.71 4.35
5181 12120 1.961394 TGACAGAGAACTAGCCGTTGT 59.039 47.619 0.00 0.00 35.56 3.32
5182 12121 2.029828 ACTGACAGAGAACTAGCCGTTG 60.030 50.000 10.08 0.00 35.56 4.10
5185 12124 3.732471 GCTAACTGACAGAGAACTAGCCG 60.732 52.174 10.08 0.00 0.00 5.52
5201 12140 7.665974 AGCAAAACTAATCCTAAACAGCTAACT 59.334 33.333 0.00 0.00 0.00 2.24
5202 12141 7.817641 AGCAAAACTAATCCTAAACAGCTAAC 58.182 34.615 0.00 0.00 0.00 2.34
5203 12142 7.996098 AGCAAAACTAATCCTAAACAGCTAA 57.004 32.000 0.00 0.00 0.00 3.09
5204 12143 7.663905 TGAAGCAAAACTAATCCTAAACAGCTA 59.336 33.333 0.00 0.00 0.00 3.32
5205 12144 6.490040 TGAAGCAAAACTAATCCTAAACAGCT 59.510 34.615 0.00 0.00 0.00 4.24
5206 12145 6.677913 TGAAGCAAAACTAATCCTAAACAGC 58.322 36.000 0.00 0.00 0.00 4.40
5207 12146 6.803807 GCTGAAGCAAAACTAATCCTAAACAG 59.196 38.462 0.00 0.00 41.59 3.16
5208 12147 6.677913 GCTGAAGCAAAACTAATCCTAAACA 58.322 36.000 0.00 0.00 41.59 2.83
5225 12164 3.198068 TGACCGATTATTCTGCTGAAGC 58.802 45.455 11.86 0.00 42.50 3.86
5226 12165 3.247173 GCTGACCGATTATTCTGCTGAAG 59.753 47.826 11.86 0.00 35.44 3.02
5227 12166 3.118629 AGCTGACCGATTATTCTGCTGAA 60.119 43.478 8.59 8.59 43.18 3.02
5228 12167 2.432146 AGCTGACCGATTATTCTGCTGA 59.568 45.455 2.60 0.00 43.18 4.26
5231 12170 1.789464 CGAGCTGACCGATTATTCTGC 59.211 52.381 0.00 0.00 37.06 4.26
5232 12171 3.085443 ACGAGCTGACCGATTATTCTG 57.915 47.619 0.00 0.00 0.00 3.02
5233 12172 3.130516 TCAACGAGCTGACCGATTATTCT 59.869 43.478 0.00 0.00 0.00 2.40
5234 12173 3.444916 TCAACGAGCTGACCGATTATTC 58.555 45.455 0.00 0.00 0.00 1.75
5236 12175 2.427453 ACTCAACGAGCTGACCGATTAT 59.573 45.455 0.00 0.00 32.04 1.28
5237 12176 1.816835 ACTCAACGAGCTGACCGATTA 59.183 47.619 0.00 0.00 32.04 1.75
5238 12177 0.603569 ACTCAACGAGCTGACCGATT 59.396 50.000 0.00 0.00 32.04 3.34
5239 12178 0.603569 AACTCAACGAGCTGACCGAT 59.396 50.000 0.00 0.00 32.04 4.18
5240 12179 1.199327 CTAACTCAACGAGCTGACCGA 59.801 52.381 0.00 0.00 32.04 4.69
5241 12180 1.068472 ACTAACTCAACGAGCTGACCG 60.068 52.381 0.00 0.00 32.04 4.79
5242 12181 2.597520 GACTAACTCAACGAGCTGACC 58.402 52.381 0.00 0.00 32.04 4.02
5243 12182 2.243407 CGACTAACTCAACGAGCTGAC 58.757 52.381 0.00 0.00 32.04 3.51
5244 12183 1.878088 ACGACTAACTCAACGAGCTGA 59.122 47.619 0.00 0.00 32.04 4.26
5246 12185 1.136029 CGACGACTAACTCAACGAGCT 60.136 52.381 0.00 0.00 32.04 4.09
5247 12186 1.136141 TCGACGACTAACTCAACGAGC 60.136 52.381 0.00 0.00 32.04 5.03
5248 12187 2.760181 CTCGACGACTAACTCAACGAG 58.240 52.381 0.00 0.00 37.64 4.18
5249 12188 1.136141 GCTCGACGACTAACTCAACGA 60.136 52.381 0.00 0.00 0.00 3.85
5250 12189 1.136029 AGCTCGACGACTAACTCAACG 60.136 52.381 0.00 0.00 0.00 4.10
5251 12190 2.095869 TCAGCTCGACGACTAACTCAAC 60.096 50.000 0.00 0.00 0.00 3.18
5252 12191 2.148768 TCAGCTCGACGACTAACTCAA 58.851 47.619 0.00 0.00 0.00 3.02
5253 12192 1.804601 TCAGCTCGACGACTAACTCA 58.195 50.000 0.00 0.00 0.00 3.41
5254 12193 2.286536 GGATCAGCTCGACGACTAACTC 60.287 54.545 0.00 0.00 0.00 3.01
5255 12194 1.671845 GGATCAGCTCGACGACTAACT 59.328 52.381 0.00 0.00 0.00 2.24
5256 12195 1.400846 TGGATCAGCTCGACGACTAAC 59.599 52.381 0.00 0.00 0.00 2.34
5258 12197 1.300481 CTGGATCAGCTCGACGACTA 58.700 55.000 0.00 0.00 0.00 2.59
5259 12198 0.678366 ACTGGATCAGCTCGACGACT 60.678 55.000 0.00 0.00 34.37 4.18
5260 12199 0.171455 AACTGGATCAGCTCGACGAC 59.829 55.000 0.00 0.00 34.37 4.34
5261 12200 1.671328 CTAACTGGATCAGCTCGACGA 59.329 52.381 0.00 0.00 34.37 4.20
5262 12201 1.402259 ACTAACTGGATCAGCTCGACG 59.598 52.381 0.00 0.00 34.37 5.12
5264 12203 3.258372 ACAAACTAACTGGATCAGCTCGA 59.742 43.478 0.00 0.00 34.37 4.04
5265 12204 3.589988 ACAAACTAACTGGATCAGCTCG 58.410 45.455 0.00 0.00 34.37 5.03
5267 12206 4.624125 GCCTACAAACTAACTGGATCAGCT 60.624 45.833 0.00 0.00 34.37 4.24
5269 12208 4.872691 CAGCCTACAAACTAACTGGATCAG 59.127 45.833 0.00 0.00 37.52 2.90
5271 12210 4.192317 CCAGCCTACAAACTAACTGGATC 58.808 47.826 0.48 0.00 46.10 3.36
5272 12211 3.587506 ACCAGCCTACAAACTAACTGGAT 59.412 43.478 13.45 0.00 46.10 3.41
5273 12212 2.976882 ACCAGCCTACAAACTAACTGGA 59.023 45.455 13.45 0.00 46.10 3.86
5275 12214 4.002906 TCACCAGCCTACAAACTAACTG 57.997 45.455 0.00 0.00 0.00 3.16
5276 12215 4.620803 CGATCACCAGCCTACAAACTAACT 60.621 45.833 0.00 0.00 0.00 2.24
5277 12216 3.617263 CGATCACCAGCCTACAAACTAAC 59.383 47.826 0.00 0.00 0.00 2.34
5278 12217 3.259876 ACGATCACCAGCCTACAAACTAA 59.740 43.478 0.00 0.00 0.00 2.24
5279 12218 2.829720 ACGATCACCAGCCTACAAACTA 59.170 45.455 0.00 0.00 0.00 2.24
5282 12221 1.899814 AGACGATCACCAGCCTACAAA 59.100 47.619 0.00 0.00 0.00 2.83
5284 12223 0.817654 CAGACGATCACCAGCCTACA 59.182 55.000 0.00 0.00 0.00 2.74
5285 12224 0.818296 ACAGACGATCACCAGCCTAC 59.182 55.000 0.00 0.00 0.00 3.18
5286 12225 1.103803 GACAGACGATCACCAGCCTA 58.896 55.000 0.00 0.00 0.00 3.93
5287 12226 1.608717 GGACAGACGATCACCAGCCT 61.609 60.000 0.00 0.00 0.00 4.58
5288 12227 1.153549 GGACAGACGATCACCAGCC 60.154 63.158 0.00 0.00 0.00 4.85
5289 12228 1.517257 CGGACAGACGATCACCAGC 60.517 63.158 0.00 0.00 35.47 4.85
5290 12229 0.456824 CACGGACAGACGATCACCAG 60.457 60.000 0.00 0.00 37.61 4.00
5292 12231 1.153823 CCACGGACAGACGATCACC 60.154 63.158 0.00 0.00 37.61 4.02
5293 12232 1.153823 CCCACGGACAGACGATCAC 60.154 63.158 0.00 0.00 37.61 3.06
5294 12233 0.683179 ATCCCACGGACAGACGATCA 60.683 55.000 0.00 0.00 32.98 2.92
5295 12234 0.249073 CATCCCACGGACAGACGATC 60.249 60.000 0.00 0.00 32.98 3.69
5296 12235 1.676678 CCATCCCACGGACAGACGAT 61.677 60.000 0.00 0.00 32.98 3.73
5297 12236 2.348104 CCATCCCACGGACAGACGA 61.348 63.158 0.00 0.00 32.98 4.20
5298 12237 2.184322 CCATCCCACGGACAGACG 59.816 66.667 0.00 0.00 32.98 4.18
5302 12241 4.386951 CACGCCATCCCACGGACA 62.387 66.667 0.00 0.00 32.98 4.02
5305 12244 4.838152 CTCCACGCCATCCCACGG 62.838 72.222 0.00 0.00 0.00 4.94
5306 12245 1.744320 TATCTCCACGCCATCCCACG 61.744 60.000 0.00 0.00 0.00 4.94
5307 12246 0.468226 TTATCTCCACGCCATCCCAC 59.532 55.000 0.00 0.00 0.00 4.61
5308 12247 0.468226 GTTATCTCCACGCCATCCCA 59.532 55.000 0.00 0.00 0.00 4.37
5309 12248 0.600255 CGTTATCTCCACGCCATCCC 60.600 60.000 0.00 0.00 0.00 3.85
5317 12256 0.645868 GCTTCGTGCGTTATCTCCAC 59.354 55.000 0.00 0.00 0.00 4.02
5318 12257 0.245266 TGCTTCGTGCGTTATCTCCA 59.755 50.000 0.00 0.00 46.63 3.86
5319 12258 0.645868 GTGCTTCGTGCGTTATCTCC 59.354 55.000 0.00 0.00 46.63 3.71
5320 12259 0.294887 CGTGCTTCGTGCGTTATCTC 59.705 55.000 0.00 0.00 46.63 2.75
5322 12261 1.343821 CCGTGCTTCGTGCGTTATC 59.656 57.895 1.89 0.00 46.63 1.75
5323 12262 2.736682 GCCGTGCTTCGTGCGTTAT 61.737 57.895 1.89 0.00 46.63 1.89
5324 12263 3.408020 GCCGTGCTTCGTGCGTTA 61.408 61.111 1.89 0.00 46.63 3.18
5327 12266 4.505217 GATGCCGTGCTTCGTGCG 62.505 66.667 0.00 0.00 46.63 5.34
5328 12267 2.637715 GATGATGCCGTGCTTCGTGC 62.638 60.000 9.96 5.25 43.25 5.34
5329 12268 1.349627 GATGATGCCGTGCTTCGTG 59.650 57.895 9.96 0.00 35.83 4.35
5330 12269 0.673333 TTGATGATGCCGTGCTTCGT 60.673 50.000 6.30 6.30 35.83 3.85
5331 12270 0.027194 CTTGATGATGCCGTGCTTCG 59.973 55.000 7.08 0.00 35.83 3.79
5332 12271 0.379669 CCTTGATGATGCCGTGCTTC 59.620 55.000 5.27 5.27 34.04 3.86
5333 12272 1.033746 CCCTTGATGATGCCGTGCTT 61.034 55.000 0.00 0.00 0.00 3.91
5334 12273 1.452651 CCCTTGATGATGCCGTGCT 60.453 57.895 0.00 0.00 0.00 4.40
5336 12275 0.107508 ACTCCCTTGATGATGCCGTG 60.108 55.000 0.00 0.00 0.00 4.94
5337 12276 0.107508 CACTCCCTTGATGATGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
5338 12277 0.816825 CCACTCCCTTGATGATGCCG 60.817 60.000 0.00 0.00 0.00 5.69
5340 12279 0.106819 AGCCACTCCCTTGATGATGC 60.107 55.000 0.00 0.00 0.00 3.91
5342 12281 1.489649 CTGAGCCACTCCCTTGATGAT 59.510 52.381 0.00 0.00 0.00 2.45
5343 12282 0.907486 CTGAGCCACTCCCTTGATGA 59.093 55.000 0.00 0.00 0.00 2.92
5344 12283 0.747283 GCTGAGCCACTCCCTTGATG 60.747 60.000 0.00 0.00 0.00 3.07
5345 12284 1.606531 GCTGAGCCACTCCCTTGAT 59.393 57.895 0.00 0.00 0.00 2.57
5346 12285 2.947532 CGCTGAGCCACTCCCTTGA 61.948 63.158 0.00 0.00 0.00 3.02
5347 12286 2.249413 ATCGCTGAGCCACTCCCTTG 62.249 60.000 0.00 0.00 0.00 3.61
5351 12290 2.279120 CGATCGCTGAGCCACTCC 60.279 66.667 0.26 0.00 0.00 3.85
5352 12291 1.875813 CACGATCGCTGAGCCACTC 60.876 63.158 16.60 0.00 0.00 3.51
5353 12292 2.182791 CACGATCGCTGAGCCACT 59.817 61.111 16.60 0.00 0.00 4.00
5354 12293 2.887568 CCACGATCGCTGAGCCAC 60.888 66.667 16.60 0.00 0.00 5.01
5355 12294 4.147449 CCCACGATCGCTGAGCCA 62.147 66.667 16.60 0.00 0.00 4.75
5356 12295 3.157217 ATCCCACGATCGCTGAGCC 62.157 63.158 16.60 0.00 0.00 4.70
5357 12296 1.953138 CATCCCACGATCGCTGAGC 60.953 63.158 16.60 0.00 0.00 4.26
5358 12297 1.300465 CCATCCCACGATCGCTGAG 60.300 63.158 16.60 3.98 0.00 3.35
5359 12298 2.814604 CCATCCCACGATCGCTGA 59.185 61.111 16.60 9.67 0.00 4.26
5360 12299 2.969238 GCCATCCCACGATCGCTG 60.969 66.667 16.60 12.44 30.63 5.18
5362 12301 3.272334 GTGCCATCCCACGATCGC 61.272 66.667 16.60 0.00 33.60 4.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.