Multiple sequence alignment - TraesCS2B01G151700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G151700 chr2B 100.000 2397 0 0 1 2397 118601413 118603809 0.000000e+00 4427.0
1 TraesCS2B01G151700 chr2B 90.476 63 6 0 220 282 146997888 146997950 1.530000e-12 84.2
2 TraesCS2B01G151700 chr2D 88.210 2129 109 56 336 2397 76857212 76859265 0.000000e+00 2410.0
3 TraesCS2B01G151700 chr2D 90.541 74 7 0 1 74 76856771 76856844 5.450000e-17 99.0
4 TraesCS2B01G151700 chr2D 82.895 76 13 0 237 312 22949925 22949850 4.280000e-08 69.4
5 TraesCS2B01G151700 chr2D 90.909 44 4 0 248 291 385281375 385281332 2.570000e-05 60.2
6 TraesCS2B01G151700 chr2A 91.176 1666 79 33 782 2397 77526941 77528588 0.000000e+00 2200.0
7 TraesCS2B01G151700 chr2A 87.288 590 51 15 178 751 77526368 77526949 0.000000e+00 652.0
8 TraesCS2B01G151700 chr2A 93.750 80 4 1 1 79 77524424 77524503 4.190000e-23 119.0
9 TraesCS2B01G151700 chr3A 81.618 136 24 1 178 313 552303246 552303380 7.000000e-21 111.0
10 TraesCS2B01G151700 chr1B 84.043 94 12 3 237 328 584327924 584327832 1.180000e-13 87.9
11 TraesCS2B01G151700 chrUn 85.526 76 11 0 237 312 416282780 416282705 1.980000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G151700 chr2B 118601413 118603809 2396 False 4427.000000 4427 100.0000 1 2397 1 chr2B.!!$F1 2396
1 TraesCS2B01G151700 chr2D 76856771 76859265 2494 False 1254.500000 2410 89.3755 1 2397 2 chr2D.!!$F1 2396
2 TraesCS2B01G151700 chr2A 77524424 77528588 4164 False 990.333333 2200 90.7380 1 2397 3 chr2A.!!$F1 2396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 2560 0.179048 CGCCCTGTCCTAATCATGCA 60.179 55.0 0.0 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 4277 0.373716 GCACCGTTCCATTTAGCGAG 59.626 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 6.935240 TCCAAGAGGAAGAGTTAGAATTCA 57.065 37.500 8.44 0.00 42.23 2.57
79 81 7.622893 AGAGGAAGAGTTAGAATTCAATTGC 57.377 36.000 8.44 0.00 0.00 3.56
80 82 6.601217 AGAGGAAGAGTTAGAATTCAATTGCC 59.399 38.462 8.44 0.00 0.00 4.52
81 83 6.488715 AGGAAGAGTTAGAATTCAATTGCCT 58.511 36.000 8.44 1.26 0.00 4.75
82 84 7.633789 AGGAAGAGTTAGAATTCAATTGCCTA 58.366 34.615 8.44 0.00 0.00 3.93
83 85 8.109634 AGGAAGAGTTAGAATTCAATTGCCTAA 58.890 33.333 8.44 3.44 0.00 2.69
84 86 8.739972 GGAAGAGTTAGAATTCAATTGCCTAAA 58.260 33.333 8.44 0.00 0.00 1.85
85 87 9.780413 GAAGAGTTAGAATTCAATTGCCTAAAG 57.220 33.333 8.44 0.00 0.00 1.85
86 88 8.286191 AGAGTTAGAATTCAATTGCCTAAAGG 57.714 34.615 8.44 0.00 38.53 3.11
87 89 7.890655 AGAGTTAGAATTCAATTGCCTAAAGGT 59.109 33.333 8.44 0.00 37.57 3.50
88 90 8.056407 AGTTAGAATTCAATTGCCTAAAGGTC 57.944 34.615 8.44 0.00 37.57 3.85
89 91 5.921962 AGAATTCAATTGCCTAAAGGTCC 57.078 39.130 8.44 0.00 37.57 4.46
90 92 5.332743 AGAATTCAATTGCCTAAAGGTCCA 58.667 37.500 8.44 0.00 37.57 4.02
91 93 5.779771 AGAATTCAATTGCCTAAAGGTCCAA 59.220 36.000 8.44 0.00 37.57 3.53
92 94 5.665916 ATTCAATTGCCTAAAGGTCCAAG 57.334 39.130 0.00 0.00 37.57 3.61
93 95 4.380843 TCAATTGCCTAAAGGTCCAAGA 57.619 40.909 0.00 0.00 37.57 3.02
94 96 4.335416 TCAATTGCCTAAAGGTCCAAGAG 58.665 43.478 0.00 0.00 37.57 2.85
95 97 2.879103 TTGCCTAAAGGTCCAAGAGG 57.121 50.000 0.00 0.00 37.57 3.69
96 98 2.038863 TGCCTAAAGGTCCAAGAGGA 57.961 50.000 7.06 0.00 37.33 3.71
107 109 3.748645 TCCAAGAGGAAGAGCTAGAGT 57.251 47.619 0.00 0.00 42.23 3.24
108 110 4.054359 TCCAAGAGGAAGAGCTAGAGTT 57.946 45.455 0.00 0.00 42.23 3.01
109 111 4.020543 TCCAAGAGGAAGAGCTAGAGTTC 58.979 47.826 0.00 0.00 42.23 3.01
112 114 3.541632 AGAGGAAGAGCTAGAGTTCGAG 58.458 50.000 0.00 0.00 0.00 4.04
127 129 3.067106 GTTCGAGCTGAAACCAGAATGA 58.933 45.455 0.00 0.00 36.78 2.57
131 133 3.937706 CGAGCTGAAACCAGAATGAGAAT 59.062 43.478 0.00 0.00 39.69 2.40
139 141 7.106239 TGAAACCAGAATGAGAATAGTCCTTC 58.894 38.462 0.00 0.00 39.69 3.46
140 142 5.622346 ACCAGAATGAGAATAGTCCTTCC 57.378 43.478 0.00 0.00 39.69 3.46
141 143 4.100189 ACCAGAATGAGAATAGTCCTTCCG 59.900 45.833 0.00 0.00 39.69 4.30
142 144 4.502259 CCAGAATGAGAATAGTCCTTCCGG 60.502 50.000 0.00 0.00 39.69 5.14
143 145 3.070302 AGAATGAGAATAGTCCTTCCGGC 59.930 47.826 0.00 0.00 0.00 6.13
144 146 0.744874 TGAGAATAGTCCTTCCGGCG 59.255 55.000 0.00 0.00 0.00 6.46
174 1971 7.148205 GGTGTATAAATACCGTGTGAACCAATT 60.148 37.037 0.00 0.00 32.33 2.32
199 2005 2.381911 GTTAGGAGGACGGTGGTATCA 58.618 52.381 0.00 0.00 0.00 2.15
200 2006 2.359981 TAGGAGGACGGTGGTATCAG 57.640 55.000 0.00 0.00 0.00 2.90
205 2011 1.521681 GACGGTGGTATCAGCAGCC 60.522 63.158 5.93 0.00 40.61 4.85
206 2012 2.203070 CGGTGGTATCAGCAGCCC 60.203 66.667 5.93 0.00 40.61 5.19
207 2013 2.998097 GGTGGTATCAGCAGCCCA 59.002 61.111 0.00 0.00 38.07 5.36
213 2020 1.699634 GGTATCAGCAGCCCATTAGGA 59.300 52.381 0.00 0.00 38.24 2.94
215 2022 2.875094 ATCAGCAGCCCATTAGGATC 57.125 50.000 0.00 0.00 38.24 3.36
233 2040 3.769844 GGATCCAAGTCCTAGAAGTGACA 59.230 47.826 6.95 0.00 35.32 3.58
254 2061 1.067199 CGGTGCTCGCATTTTTCTGC 61.067 55.000 0.00 0.00 38.81 4.26
268 2075 6.676213 GCATTTTTCTGCATTTATTTCAGGCC 60.676 38.462 0.00 0.00 41.87 5.19
271 2078 5.743636 TTCTGCATTTATTTCAGGCCTTT 57.256 34.783 0.00 0.00 0.00 3.11
272 2079 5.743636 TCTGCATTTATTTCAGGCCTTTT 57.256 34.783 0.00 0.00 0.00 2.27
295 2102 2.349590 CGATGTGCATTCAGTGGAAGA 58.650 47.619 0.00 0.00 36.25 2.87
298 2105 3.490439 TGTGCATTCAGTGGAAGAAGA 57.510 42.857 0.00 0.00 36.25 2.87
303 2110 3.994392 GCATTCAGTGGAAGAAGACGTTA 59.006 43.478 0.00 0.00 36.25 3.18
305 2112 5.220491 GCATTCAGTGGAAGAAGACGTTATC 60.220 44.000 0.00 0.00 36.25 1.75
323 2130 0.387929 TCGTCCACTGTGAAGGTGTC 59.612 55.000 9.86 0.00 33.31 3.67
345 2152 0.387622 CGCCTGCACCATGTCAAAAG 60.388 55.000 0.00 0.00 0.00 2.27
405 2226 9.981114 AAAACCAAAAGAGTATTCACCAAATAG 57.019 29.630 0.00 0.00 30.39 1.73
459 2282 6.633500 TTTAGAACAATGCACAAAGCTACT 57.367 33.333 0.00 0.00 45.94 2.57
460 2283 6.633500 TTAGAACAATGCACAAAGCTACTT 57.367 33.333 0.00 0.00 45.94 2.24
461 2284 7.737972 TTAGAACAATGCACAAAGCTACTTA 57.262 32.000 0.00 0.00 45.94 2.24
463 2286 7.219484 AGAACAATGCACAAAGCTACTTAAT 57.781 32.000 0.00 0.00 45.94 1.40
550 2373 1.154205 AATGCATCTGTCGCCGTAGC 61.154 55.000 0.00 0.00 0.00 3.58
602 2429 4.947883 TCTCTCTCCCTTTATCCTCACAA 58.052 43.478 0.00 0.00 0.00 3.33
726 2560 0.179048 CGCCCTGTCCTAATCATGCA 60.179 55.000 0.00 0.00 0.00 3.96
755 2589 3.140576 TCGACCACGACTCTCTCTC 57.859 57.895 0.00 0.00 43.81 3.20
756 2590 0.609151 TCGACCACGACTCTCTCTCT 59.391 55.000 0.00 0.00 43.81 3.10
757 2591 1.003851 CGACCACGACTCTCTCTCTC 58.996 60.000 0.00 0.00 42.66 3.20
758 2592 1.404986 CGACCACGACTCTCTCTCTCT 60.405 57.143 0.00 0.00 42.66 3.10
759 2593 2.277084 GACCACGACTCTCTCTCTCTC 58.723 57.143 0.00 0.00 0.00 3.20
760 2594 1.906574 ACCACGACTCTCTCTCTCTCT 59.093 52.381 0.00 0.00 0.00 3.10
761 2595 2.093658 ACCACGACTCTCTCTCTCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
762 2596 2.168521 CCACGACTCTCTCTCTCTCTCT 59.831 54.545 0.00 0.00 0.00 3.10
763 2597 3.448686 CACGACTCTCTCTCTCTCTCTC 58.551 54.545 0.00 0.00 0.00 3.20
764 2598 3.131223 CACGACTCTCTCTCTCTCTCTCT 59.869 52.174 0.00 0.00 0.00 3.10
765 2599 3.381908 ACGACTCTCTCTCTCTCTCTCTC 59.618 52.174 0.00 0.00 0.00 3.20
866 2706 0.833287 CACTATCTCCCACCCCACAG 59.167 60.000 0.00 0.00 0.00 3.66
937 2802 1.893801 GTCCCACCTATCACCTATCCG 59.106 57.143 0.00 0.00 0.00 4.18
993 2858 1.297967 CGTCCGTCTCGATCAGCAG 60.298 63.158 0.00 0.00 0.00 4.24
994 2859 1.587613 GTCCGTCTCGATCAGCAGC 60.588 63.158 0.00 0.00 0.00 5.25
995 2860 2.046285 TCCGTCTCGATCAGCAGCA 61.046 57.895 0.00 0.00 0.00 4.41
996 2861 1.588403 CCGTCTCGATCAGCAGCAG 60.588 63.158 0.00 0.00 0.00 4.24
997 2862 1.431036 CGTCTCGATCAGCAGCAGA 59.569 57.895 0.00 0.00 0.00 4.26
1014 2879 4.673298 AACATGCCGACGTCGCCA 62.673 61.111 31.73 28.18 38.18 5.69
1044 2909 2.366570 GACCTCCTGAGCCCCTCT 59.633 66.667 0.00 0.00 0.00 3.69
1045 2910 1.760480 GACCTCCTGAGCCCCTCTC 60.760 68.421 0.00 0.00 42.23 3.20
1046 2911 2.445654 CCTCCTGAGCCCCTCTCC 60.446 72.222 0.00 0.00 41.18 3.71
1047 2912 2.695597 CTCCTGAGCCCCTCTCCT 59.304 66.667 0.00 0.00 41.18 3.69
1050 2915 2.837291 CTGAGCCCCTCTCCTCCG 60.837 72.222 0.00 0.00 41.18 4.63
1060 2925 3.080121 CTCCTCCGCCTGCTCCTT 61.080 66.667 0.00 0.00 0.00 3.36
1061 2926 3.077556 TCCTCCGCCTGCTCCTTC 61.078 66.667 0.00 0.00 0.00 3.46
1312 3186 3.646650 GCAAGTGCAAGCTGTTGAA 57.353 47.368 9.99 0.00 41.59 2.69
1328 3202 4.122776 TGTTGAAACTTGAGAGCTGAGAC 58.877 43.478 0.00 0.00 0.00 3.36
1334 3208 3.495331 ACTTGAGAGCTGAGACTTGAGA 58.505 45.455 0.00 0.00 0.00 3.27
1409 3292 4.541482 GGTGACATGCATGCGCCG 62.541 66.667 26.53 6.23 37.32 6.46
1412 3295 2.277501 GACATGCATGCGCCGTTC 60.278 61.111 26.53 11.55 37.32 3.95
1427 3310 0.452122 CGTTCGTGTTTCGGGCAATC 60.452 55.000 0.00 0.00 40.32 2.67
1631 3520 4.253685 GCTGGTCATATGTGTGTAGTTGT 58.746 43.478 1.90 0.00 0.00 3.32
1676 3569 3.112075 CGACGGCGTTCATGCACT 61.112 61.111 16.19 0.00 36.28 4.40
1677 3570 2.778679 GACGGCGTTCATGCACTC 59.221 61.111 16.19 0.00 36.28 3.51
1746 3653 4.261698 GGTGTTGTAAAAAGCGGTGGTAAT 60.262 41.667 0.00 0.00 0.00 1.89
1747 3654 4.913345 GTGTTGTAAAAAGCGGTGGTAATC 59.087 41.667 0.00 0.00 0.00 1.75
1753 3660 1.435577 AAGCGGTGGTAATCGTTGAC 58.564 50.000 0.00 0.00 0.00 3.18
1768 3675 9.033262 GTAATCGTTGACGTTTTACTGTATTTG 57.967 33.333 16.86 0.00 40.80 2.32
1782 3689 2.291540 TGTATTTGGAAAGGAGGCTGGG 60.292 50.000 0.00 0.00 0.00 4.45
1783 3690 1.084018 ATTTGGAAAGGAGGCTGGGA 58.916 50.000 0.00 0.00 0.00 4.37
1791 3698 0.548510 AGGAGGCTGGGATAACTTGC 59.451 55.000 0.00 0.00 0.00 4.01
1883 3790 4.428294 TCTGAGGGCATTAATCTTCAGG 57.572 45.455 13.17 0.83 0.00 3.86
2002 3914 5.966742 AAACCTCCTTTTTCTATGCACTC 57.033 39.130 0.00 0.00 0.00 3.51
2029 3941 8.408043 TGATTCTCACTTCACATTACCAAAAT 57.592 30.769 0.00 0.00 0.00 1.82
2082 3994 3.996150 ATCAGTGAAAACAACTGCAGG 57.004 42.857 19.93 3.21 43.88 4.85
2166 4078 2.489722 GCAGTTTCATGGGGACTTCTTC 59.510 50.000 0.00 0.00 0.00 2.87
2269 4181 1.546476 ACTAGAGCAGGTGTTCCTTCG 59.454 52.381 0.00 0.00 43.07 3.79
2332 4244 3.683822 AGTACACTTCGTAGTCCTTCTCG 59.316 47.826 0.00 0.00 30.26 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.415950 TTGGACCTTTAAGCAATTATTTCAGA 57.584 30.769 0.00 0.00 0.00 3.27
37 38 6.134535 TCCTCTTGGACCTTTAAGCAATTA 57.865 37.500 0.00 0.00 37.46 1.40
74 76 3.333680 TCCTCTTGGACCTTTAGGCAATT 59.666 43.478 0.00 0.00 37.46 2.32
79 81 3.369997 GCTCTTCCTCTTGGACCTTTAGG 60.370 52.174 0.00 0.00 43.06 2.69
80 82 3.517500 AGCTCTTCCTCTTGGACCTTTAG 59.482 47.826 0.00 0.00 43.06 1.85
81 83 3.521727 AGCTCTTCCTCTTGGACCTTTA 58.478 45.455 0.00 0.00 43.06 1.85
82 84 2.343625 AGCTCTTCCTCTTGGACCTTT 58.656 47.619 0.00 0.00 43.06 3.11
83 85 2.037385 AGCTCTTCCTCTTGGACCTT 57.963 50.000 0.00 0.00 43.06 3.50
84 86 2.313342 TCTAGCTCTTCCTCTTGGACCT 59.687 50.000 0.00 0.00 43.06 3.85
85 87 2.693074 CTCTAGCTCTTCCTCTTGGACC 59.307 54.545 0.00 0.00 43.06 4.46
86 88 3.361786 ACTCTAGCTCTTCCTCTTGGAC 58.638 50.000 0.00 0.00 43.06 4.02
87 89 3.748645 ACTCTAGCTCTTCCTCTTGGA 57.251 47.619 0.00 0.00 41.36 3.53
88 90 3.181491 CGAACTCTAGCTCTTCCTCTTGG 60.181 52.174 0.00 0.00 0.00 3.61
89 91 3.692101 TCGAACTCTAGCTCTTCCTCTTG 59.308 47.826 0.00 0.00 0.00 3.02
90 92 3.945285 CTCGAACTCTAGCTCTTCCTCTT 59.055 47.826 0.00 0.00 0.00 2.85
91 93 3.541632 CTCGAACTCTAGCTCTTCCTCT 58.458 50.000 0.00 0.00 0.00 3.69
92 94 2.032924 GCTCGAACTCTAGCTCTTCCTC 59.967 54.545 0.00 0.00 35.80 3.71
93 95 2.021457 GCTCGAACTCTAGCTCTTCCT 58.979 52.381 0.00 0.00 35.80 3.36
94 96 2.021457 AGCTCGAACTCTAGCTCTTCC 58.979 52.381 0.00 0.00 45.92 3.46
95 97 2.680841 TCAGCTCGAACTCTAGCTCTTC 59.319 50.000 2.93 0.00 45.92 2.87
96 98 2.717390 TCAGCTCGAACTCTAGCTCTT 58.283 47.619 2.93 0.00 45.92 2.85
97 99 2.411628 TCAGCTCGAACTCTAGCTCT 57.588 50.000 2.93 0.00 45.92 4.09
98 100 3.175929 GTTTCAGCTCGAACTCTAGCTC 58.824 50.000 2.93 0.00 45.92 4.09
100 102 2.263945 GGTTTCAGCTCGAACTCTAGC 58.736 52.381 8.24 0.00 39.08 3.42
101 103 3.191581 TCTGGTTTCAGCTCGAACTCTAG 59.808 47.826 8.24 7.50 40.69 2.43
102 104 3.154710 TCTGGTTTCAGCTCGAACTCTA 58.845 45.455 8.24 0.21 40.69 2.43
103 105 1.964223 TCTGGTTTCAGCTCGAACTCT 59.036 47.619 8.24 0.00 40.69 3.24
104 106 2.440539 TCTGGTTTCAGCTCGAACTC 57.559 50.000 8.24 1.38 40.69 3.01
105 107 2.910688 TTCTGGTTTCAGCTCGAACT 57.089 45.000 8.24 0.00 40.69 3.01
106 108 3.067106 TCATTCTGGTTTCAGCTCGAAC 58.933 45.455 1.00 1.00 40.69 3.95
107 109 3.006859 TCTCATTCTGGTTTCAGCTCGAA 59.993 43.478 0.00 0.00 40.69 3.71
108 110 2.562738 TCTCATTCTGGTTTCAGCTCGA 59.437 45.455 0.00 0.00 40.69 4.04
109 111 2.964740 TCTCATTCTGGTTTCAGCTCG 58.035 47.619 0.00 0.00 40.69 5.03
112 114 5.295540 GGACTATTCTCATTCTGGTTTCAGC 59.704 44.000 0.00 0.00 40.69 4.26
140 142 2.472488 GGTATTTATACACCGTTCGCCG 59.528 50.000 2.61 0.00 34.98 6.46
174 1971 0.682852 CACCGTCCTCCTAACCACAA 59.317 55.000 0.00 0.00 0.00 3.33
199 2005 1.144503 CTTGGATCCTAATGGGCTGCT 59.855 52.381 14.23 0.00 34.39 4.24
200 2006 1.133668 ACTTGGATCCTAATGGGCTGC 60.134 52.381 14.23 0.00 34.39 5.25
213 2020 3.515901 GGTGTCACTTCTAGGACTTGGAT 59.484 47.826 2.35 0.00 35.11 3.41
215 2022 2.352814 CGGTGTCACTTCTAGGACTTGG 60.353 54.545 2.35 0.00 35.11 3.61
227 2034 4.664677 GCGAGCACCGGTGTCACT 62.665 66.667 33.92 23.15 39.04 3.41
228 2035 4.961511 TGCGAGCACCGGTGTCAC 62.962 66.667 33.92 22.70 39.04 3.67
233 2040 0.889186 AGAAAAATGCGAGCACCGGT 60.889 50.000 0.00 0.00 39.04 5.28
254 2061 5.890334 TCGCTAAAAGGCCTGAAATAAATG 58.110 37.500 5.69 0.00 0.00 2.32
268 2075 4.093514 CACTGAATGCACATCGCTAAAAG 58.906 43.478 0.00 0.00 43.06 2.27
271 2078 2.009051 CCACTGAATGCACATCGCTAA 58.991 47.619 0.00 0.00 43.06 3.09
272 2079 1.206849 TCCACTGAATGCACATCGCTA 59.793 47.619 0.00 0.00 43.06 4.26
303 2110 1.000955 GACACCTTCACAGTGGACGAT 59.999 52.381 0.00 0.00 39.63 3.73
305 2112 0.389391 AGACACCTTCACAGTGGACG 59.611 55.000 0.00 0.00 39.63 4.79
309 2116 1.835483 GCGCAGACACCTTCACAGTG 61.835 60.000 0.30 0.00 41.15 3.66
312 2119 2.280797 GGCGCAGACACCTTCACA 60.281 61.111 10.83 0.00 31.66 3.58
313 2120 2.031163 AGGCGCAGACACCTTCAC 59.969 61.111 10.83 0.00 39.87 3.18
437 2260 6.633500 AAGTAGCTTTGTGCATTGTTCTAA 57.367 33.333 0.00 0.00 45.94 2.10
459 2282 3.738830 ACGGCTCGCTGGTATAATTAA 57.261 42.857 2.45 0.00 0.00 1.40
460 2283 3.738830 AACGGCTCGCTGGTATAATTA 57.261 42.857 2.45 0.00 0.00 1.40
461 2284 2.614829 AACGGCTCGCTGGTATAATT 57.385 45.000 2.45 0.00 0.00 1.40
463 2286 2.389962 AAAACGGCTCGCTGGTATAA 57.610 45.000 2.45 0.00 0.00 0.98
512 2335 4.399934 GCATTTAATGTTAAAGTCGGGGGA 59.600 41.667 6.81 0.00 36.22 4.81
519 2342 6.747280 GCGACAGATGCATTTAATGTTAAAGT 59.253 34.615 0.00 1.23 36.22 2.66
526 2349 2.032054 ACGGCGACAGATGCATTTAATG 59.968 45.455 16.62 0.00 0.00 1.90
602 2429 2.078849 TCTTTCATGTGACGCATCGT 57.921 45.000 0.00 0.00 45.10 3.73
726 2560 4.471908 TGGTCGATGCGCATGGCT 62.472 61.111 30.76 3.52 44.05 4.75
750 2584 3.837731 TGTGTGAGAGAGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
752 2586 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
755 2589 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
756 2590 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
757 2591 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
758 2592 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
759 2593 2.099756 TGTGTGTGTGTGTGAGAGAGAG 59.900 50.000 0.00 0.00 0.00 3.20
760 2594 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
761 2595 2.196749 GTGTGTGTGTGTGTGAGAGAG 58.803 52.381 0.00 0.00 0.00 3.20
762 2596 1.548269 TGTGTGTGTGTGTGTGAGAGA 59.452 47.619 0.00 0.00 0.00 3.10
763 2597 1.660607 GTGTGTGTGTGTGTGTGAGAG 59.339 52.381 0.00 0.00 0.00 3.20
764 2598 1.001406 TGTGTGTGTGTGTGTGTGAGA 59.999 47.619 0.00 0.00 0.00 3.27
765 2599 1.128507 GTGTGTGTGTGTGTGTGTGAG 59.871 52.381 0.00 0.00 0.00 3.51
937 2802 1.196127 GACGGACGGATGTTTTTGGAC 59.804 52.381 0.00 0.00 0.00 4.02
994 2859 3.071459 GCGACGTCGGCATGTTCTG 62.071 63.158 36.13 7.71 40.23 3.02
995 2860 2.809601 GCGACGTCGGCATGTTCT 60.810 61.111 36.13 0.00 40.23 3.01
1014 2879 4.680537 AGGTCCAGGAGCGACGGT 62.681 66.667 13.16 0.00 35.00 4.83
1044 2909 3.077556 GAAGGAGCAGGCGGAGGA 61.078 66.667 0.00 0.00 0.00 3.71
1045 2910 4.521062 CGAAGGAGCAGGCGGAGG 62.521 72.222 0.00 0.00 0.00 4.30
1302 3176 3.314635 CAGCTCTCAAGTTTCAACAGCTT 59.685 43.478 0.03 0.00 32.88 3.74
1312 3186 3.894427 TCTCAAGTCTCAGCTCTCAAGTT 59.106 43.478 0.00 0.00 0.00 2.66
1409 3292 0.452122 CGATTGCCCGAAACACGAAC 60.452 55.000 0.00 0.00 45.77 3.95
1412 3295 2.478746 CCGATTGCCCGAAACACG 59.521 61.111 0.00 0.00 42.18 4.49
1427 3310 4.564041 CAGAAGGATCTATGAACATCCCG 58.436 47.826 0.00 0.00 39.73 5.14
1611 3500 5.242434 GGAACAACTACACACATATGACCA 58.758 41.667 10.38 0.00 0.00 4.02
1746 3653 5.752472 TCCAAATACAGTAAAACGTCAACGA 59.248 36.000 9.88 0.00 43.02 3.85
1747 3654 5.976586 TCCAAATACAGTAAAACGTCAACG 58.023 37.500 0.12 0.12 46.33 4.10
1753 3660 6.608610 CCTCCTTTCCAAATACAGTAAAACG 58.391 40.000 0.00 0.00 0.00 3.60
1768 3675 1.847088 AGTTATCCCAGCCTCCTTTCC 59.153 52.381 0.00 0.00 0.00 3.13
1782 3689 6.958193 CGATTTTCAGACAAGAGCAAGTTATC 59.042 38.462 0.00 0.00 0.00 1.75
1783 3690 6.650807 TCGATTTTCAGACAAGAGCAAGTTAT 59.349 34.615 0.00 0.00 0.00 1.89
1791 3698 7.704047 TGATATCAGTCGATTTTCAGACAAGAG 59.296 37.037 0.00 0.00 39.67 2.85
1883 3790 0.592247 CGCAACTTGCAACTGTGGAC 60.592 55.000 14.10 0.00 45.36 4.02
2069 3981 5.453198 CCTGGTAATTTCCTGCAGTTGTTTT 60.453 40.000 13.81 2.43 0.00 2.43
2077 3989 2.041620 AGCTTCCTGGTAATTTCCTGCA 59.958 45.455 2.53 0.00 0.00 4.41
2269 4181 1.183549 TCACGGGTAAAGAGGCTCTC 58.816 55.000 19.03 5.23 0.00 3.20
2320 4232 1.682740 CTCCTCCCGAGAAGGACTAC 58.317 60.000 0.00 0.00 45.00 2.73
2332 4244 0.691413 ATCCTTCGAACCCTCCTCCC 60.691 60.000 0.00 0.00 0.00 4.30
2359 4271 1.062148 GTTCCATTTAGCGAGCCGTTC 59.938 52.381 0.00 0.00 0.00 3.95
2365 4277 0.373716 GCACCGTTCCATTTAGCGAG 59.626 55.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.