Multiple sequence alignment - TraesCS2B01G151100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G151100 chr2B 100.000 4861 0 0 1 4861 118064455 118059595 0.000000e+00 8977
1 TraesCS2B01G151100 chr2B 82.574 1010 122 21 2155 3142 462941129 462942106 0.000000e+00 841
2 TraesCS2B01G151100 chr2A 89.905 3477 230 68 885 4286 77266362 77262932 0.000000e+00 4364
3 TraesCS2B01G151100 chr2A 82.609 966 66 50 1 928 77267314 77266413 0.000000e+00 760
4 TraesCS2B01G151100 chr2A 89.029 556 36 16 4315 4861 77262932 77262393 0.000000e+00 665
5 TraesCS2B01G151100 chr2A 87.169 491 33 7 935 1423 426133075 426133537 9.260000e-147 531
6 TraesCS2B01G151100 chr2A 86.032 494 39 7 935 1426 73076317 73075852 2.020000e-138 503
7 TraesCS2B01G151100 chr2A 80.663 543 44 37 343 871 73076808 73076313 9.940000e-97 364
8 TraesCS2B01G151100 chr2A 86.626 329 43 1 2155 2483 86651312 86650985 3.580000e-96 363
9 TraesCS2B01G151100 chr2A 78.676 544 53 36 343 871 426132584 426133079 2.200000e-78 303
10 TraesCS2B01G151100 chr2D 94.390 2531 99 13 1370 3862 76764023 76761498 0.000000e+00 3847
11 TraesCS2B01G151100 chr2D 87.182 944 68 25 3941 4861 76761453 76760540 0.000000e+00 1024
12 TraesCS2B01G151100 chr2D 83.750 960 67 51 1 928 76765601 76764699 0.000000e+00 826
13 TraesCS2B01G151100 chr2D 91.351 555 32 12 4315 4861 76760156 76759610 0.000000e+00 745
14 TraesCS2B01G151100 chr2D 84.826 547 36 21 822 1367 76764688 76764188 1.560000e-139 507
15 TraesCS2B01G151100 chr1A 84.107 1013 116 21 2155 3142 548472093 548471101 0.000000e+00 937
16 TraesCS2B01G151100 chr1A 83.366 1010 112 28 2155 3142 94120147 94119172 0.000000e+00 883
17 TraesCS2B01G151100 chr7B 83.154 1021 119 22 2155 3142 569422663 569421663 0.000000e+00 883
18 TraesCS2B01G151100 chrUn 82.987 1011 109 26 2155 3142 10183878 10184848 0.000000e+00 856
19 TraesCS2B01G151100 chr1B 80.818 954 124 26 2155 3086 9371700 9372616 0.000000e+00 693
20 TraesCS2B01G151100 chr1B 84.065 615 81 12 1843 2449 487775625 487776230 1.170000e-160 577
21 TraesCS2B01G151100 chr1B 86.417 508 56 10 2631 3137 646829791 646829296 1.190000e-150 544
22 TraesCS2B01G151100 chr1D 85.033 608 72 14 1842 2441 364492612 364493208 6.960000e-168 601
23 TraesCS2B01G151100 chr3B 79.873 790 101 22 2155 2921 463207660 463206906 4.310000e-145 525
24 TraesCS2B01G151100 chr5A 86.640 494 36 11 935 1426 701758237 701758702 2.010000e-143 520
25 TraesCS2B01G151100 chr7A 86.437 494 37 7 935 1426 88305697 88305232 9.330000e-142 514
26 TraesCS2B01G151100 chr7A 86.207 348 38 8 2693 3037 150330499 150330839 7.690000e-98 368
27 TraesCS2B01G151100 chr7A 79.228 544 51 36 343 871 88306189 88305693 6.070000e-84 322
28 TraesCS2B01G151100 chr7A 86.007 293 30 7 2344 2629 593450897 593451185 2.200000e-78 303
29 TraesCS2B01G151100 chr3A 86.448 487 39 9 940 1425 183811674 183812134 4.340000e-140 508
30 TraesCS2B01G151100 chr3A 86.032 494 39 7 935 1426 7975183 7974718 2.020000e-138 503
31 TraesCS2B01G151100 chr3A 80.515 544 45 35 343 871 7975676 7975179 1.290000e-95 361
32 TraesCS2B01G151100 chr3A 79.151 542 51 36 343 869 183811178 183811672 7.850000e-83 318
33 TraesCS2B01G151100 chr4A 86.327 490 37 7 939 1426 247022788 247022327 1.560000e-139 507
34 TraesCS2B01G151100 chr4A 77.847 483 47 33 405 871 247023225 247022787 1.350000e-60 244
35 TraesCS2B01G151100 chr6D 88.235 340 39 1 2155 2494 421037000 421036662 5.860000e-109 405
36 TraesCS2B01G151100 chr3D 78.997 319 65 2 3538 3855 137485988 137485671 2.950000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G151100 chr2B 118059595 118064455 4860 True 8977.000000 8977 100.0000 1 4861 1 chr2B.!!$R1 4860
1 TraesCS2B01G151100 chr2B 462941129 462942106 977 False 841.000000 841 82.5740 2155 3142 1 chr2B.!!$F1 987
2 TraesCS2B01G151100 chr2A 77262393 77267314 4921 True 1929.666667 4364 87.1810 1 4861 3 chr2A.!!$R3 4860
3 TraesCS2B01G151100 chr2A 73075852 73076808 956 True 433.500000 503 83.3475 343 1426 2 chr2A.!!$R2 1083
4 TraesCS2B01G151100 chr2A 426132584 426133537 953 False 417.000000 531 82.9225 343 1423 2 chr2A.!!$F1 1080
5 TraesCS2B01G151100 chr2D 76759610 76765601 5991 True 1389.800000 3847 88.2998 1 4861 5 chr2D.!!$R1 4860
6 TraesCS2B01G151100 chr1A 548471101 548472093 992 True 937.000000 937 84.1070 2155 3142 1 chr1A.!!$R2 987
7 TraesCS2B01G151100 chr1A 94119172 94120147 975 True 883.000000 883 83.3660 2155 3142 1 chr1A.!!$R1 987
8 TraesCS2B01G151100 chr7B 569421663 569422663 1000 True 883.000000 883 83.1540 2155 3142 1 chr7B.!!$R1 987
9 TraesCS2B01G151100 chrUn 10183878 10184848 970 False 856.000000 856 82.9870 2155 3142 1 chrUn.!!$F1 987
10 TraesCS2B01G151100 chr1B 9371700 9372616 916 False 693.000000 693 80.8180 2155 3086 1 chr1B.!!$F1 931
11 TraesCS2B01G151100 chr1B 487775625 487776230 605 False 577.000000 577 84.0650 1843 2449 1 chr1B.!!$F2 606
12 TraesCS2B01G151100 chr1D 364492612 364493208 596 False 601.000000 601 85.0330 1842 2441 1 chr1D.!!$F1 599
13 TraesCS2B01G151100 chr3B 463206906 463207660 754 True 525.000000 525 79.8730 2155 2921 1 chr3B.!!$R1 766
14 TraesCS2B01G151100 chr7A 88305232 88306189 957 True 418.000000 514 82.8325 343 1426 2 chr7A.!!$R1 1083
15 TraesCS2B01G151100 chr3A 7974718 7975676 958 True 432.000000 503 83.2735 343 1426 2 chr3A.!!$R1 1083
16 TraesCS2B01G151100 chr3A 183811178 183812134 956 False 413.000000 508 82.7995 343 1425 2 chr3A.!!$F1 1082
17 TraesCS2B01G151100 chr4A 247022327 247023225 898 True 375.500000 507 82.0870 405 1426 2 chr4A.!!$R1 1021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 684 0.031917 AGGGTTTTCGGTTGGGGTTT 60.032 50.000 0.0 0.0 0.00 3.27 F
681 753 0.178533 TTACAATAGTTCCCCGCCCG 59.821 55.000 0.0 0.0 0.00 6.13 F
778 861 1.417288 ACGGCTGATCTGATGATGGA 58.583 50.000 0.0 0.0 32.19 3.41 F
801 884 1.508632 TCGTTGGTGTAAAGCTCAGC 58.491 50.000 0.0 0.0 0.00 4.26 F
1216 1416 1.522580 GCATCTCCGCTCTTCCCAC 60.523 63.158 0.0 0.0 0.00 4.61 F
1580 1953 1.561542 TCTTTCTGAGATCCAAGCCCC 59.438 52.381 0.0 0.0 0.00 5.80 F
3089 3532 2.236395 ACAGTGCCAATACAGACCCTAC 59.764 50.000 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1843 0.031857 CATGGCGCTTGTTTTCACCA 59.968 50.000 7.64 0.00 0.00 4.17 R
1942 2333 2.189342 GAGAGCACTAACGATGCAGAC 58.811 52.381 0.00 0.00 45.92 3.51 R
1980 2377 4.008074 AGCCAACCATAATATGACTCGG 57.992 45.455 1.10 0.00 0.00 4.63 R
2558 2966 5.960704 ACCAAAACCCTATTTTACCTCTGT 58.039 37.500 0.00 0.00 0.00 3.41 R
3059 3502 2.953466 ATTGGCACTGTGATTCATGC 57.047 45.000 12.86 2.72 37.35 4.06 R
3488 3939 2.836981 ACTCTCACTTCCATGAAGAGGG 59.163 50.000 10.62 3.07 41.71 4.30 R
3926 4380 0.108520 GTCCTCCCGCAATACGTTCA 60.109 55.000 0.00 0.00 41.42 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 78 1.443407 CCCTACCCACTCATCAGCG 59.557 63.158 0.00 0.00 0.00 5.18
100 105 9.778993 CACTATTACCAAATGAACAGAGATTTG 57.221 33.333 0.00 0.00 38.67 2.32
115 120 4.399303 AGAGATTTGCCCCGATAAAAACAG 59.601 41.667 0.00 0.00 0.00 3.16
119 124 1.672854 GCCCCGATAAAAACAGCCCC 61.673 60.000 0.00 0.00 0.00 5.80
124 129 2.165641 CCGATAAAAACAGCCCCTTTCC 59.834 50.000 0.00 0.00 0.00 3.13
125 130 2.165641 CGATAAAAACAGCCCCTTTCCC 59.834 50.000 0.00 0.00 0.00 3.97
126 131 3.441101 GATAAAAACAGCCCCTTTCCCT 58.559 45.455 0.00 0.00 0.00 4.20
127 132 2.190398 AAAAACAGCCCCTTTCCCTT 57.810 45.000 0.00 0.00 0.00 3.95
187 203 2.354203 CCCCTCCTTTCTTTCGTCAGAG 60.354 54.545 0.00 0.00 0.00 3.35
380 430 2.840753 GGGGAGGTCAAACCAGCCA 61.841 63.158 9.37 0.00 41.95 4.75
381 431 1.303643 GGGAGGTCAAACCAGCCAG 60.304 63.158 9.37 0.00 41.95 4.85
403 458 4.162690 CCCTTCTTCTCCGGCCGG 62.163 72.222 39.13 39.13 0.00 6.13
434 489 4.227134 CGCCTCCCTCCATCCACG 62.227 72.222 0.00 0.00 0.00 4.94
452 509 3.584052 CCTCCCGAGGTAGCGTCG 61.584 72.222 2.31 4.52 43.61 5.12
453 510 2.823147 CTCCCGAGGTAGCGTCGT 60.823 66.667 9.73 0.00 39.62 4.34
456 513 1.515736 CCCGAGGTAGCGTCGTTTC 60.516 63.158 9.73 0.00 39.62 2.78
460 517 1.602327 GAGGTAGCGTCGTTTCCCCT 61.602 60.000 1.13 0.00 0.00 4.79
461 518 1.447314 GGTAGCGTCGTTTCCCCTG 60.447 63.158 0.00 0.00 0.00 4.45
462 519 1.291272 GTAGCGTCGTTTCCCCTGT 59.709 57.895 0.00 0.00 0.00 4.00
463 520 0.320160 GTAGCGTCGTTTCCCCTGTT 60.320 55.000 0.00 0.00 0.00 3.16
464 521 0.393820 TAGCGTCGTTTCCCCTGTTT 59.606 50.000 0.00 0.00 0.00 2.83
500 571 2.443416 GTAGGGGGTTGGATTTGTGTC 58.557 52.381 0.00 0.00 0.00 3.67
512 584 3.501950 GATTTGTGTCGGATTTTGAGGC 58.498 45.455 0.00 0.00 0.00 4.70
513 585 0.871722 TTGTGTCGGATTTTGAGGCG 59.128 50.000 0.00 0.00 0.00 5.52
515 587 2.387445 TGTCGGATTTTGAGGCGCG 61.387 57.895 0.00 0.00 0.00 6.86
516 588 3.496131 TCGGATTTTGAGGCGCGC 61.496 61.111 25.94 25.94 0.00 6.86
517 589 4.868900 CGGATTTTGAGGCGCGCG 62.869 66.667 28.44 28.44 0.00 6.86
518 590 3.799755 GGATTTTGAGGCGCGCGT 61.800 61.111 32.35 28.09 0.00 6.01
519 591 2.276680 GATTTTGAGGCGCGCGTC 60.277 61.111 38.58 38.58 0.00 5.19
520 592 3.718480 GATTTTGAGGCGCGCGTCC 62.718 63.158 40.46 30.17 0.00 4.79
570 642 4.740822 GGAATGCGGGTGCCTGGT 62.741 66.667 0.00 0.00 41.78 4.00
571 643 3.443045 GAATGCGGGTGCCTGGTG 61.443 66.667 0.00 0.00 41.78 4.17
601 673 1.268625 CGGTTGCCTGTTAGGGTTTTC 59.731 52.381 0.00 0.00 35.37 2.29
606 678 1.268625 GCCTGTTAGGGTTTTCGGTTG 59.731 52.381 0.00 0.00 35.37 3.77
607 679 1.883926 CCTGTTAGGGTTTTCGGTTGG 59.116 52.381 0.00 0.00 0.00 3.77
612 684 0.031917 AGGGTTTTCGGTTGGGGTTT 60.032 50.000 0.00 0.00 0.00 3.27
617 689 0.468400 TTTCGGTTGGGGTTTGGGAG 60.468 55.000 0.00 0.00 0.00 4.30
630 702 3.554960 GGTTTGGGAGATTTTGTGGCTTC 60.555 47.826 0.00 0.00 0.00 3.86
633 705 3.157087 TGGGAGATTTTGTGGCTTCTTC 58.843 45.455 0.00 0.00 0.00 2.87
637 709 3.077359 AGATTTTGTGGCTTCTTCGGAG 58.923 45.455 0.00 0.00 0.00 4.63
639 711 3.478857 TTTTGTGGCTTCTTCGGAGTA 57.521 42.857 0.00 0.00 0.00 2.59
640 712 3.695830 TTTGTGGCTTCTTCGGAGTAT 57.304 42.857 0.00 0.00 0.00 2.12
642 714 3.247006 TGTGGCTTCTTCGGAGTATTC 57.753 47.619 0.00 0.00 0.00 1.75
643 715 2.194271 GTGGCTTCTTCGGAGTATTCG 58.806 52.381 0.00 0.00 39.63 3.34
644 716 1.822990 TGGCTTCTTCGGAGTATTCGT 59.177 47.619 0.00 0.00 39.02 3.85
645 717 2.232941 TGGCTTCTTCGGAGTATTCGTT 59.767 45.455 0.00 0.00 39.02 3.85
646 718 2.858941 GGCTTCTTCGGAGTATTCGTTC 59.141 50.000 0.00 0.00 39.02 3.95
647 719 3.508762 GCTTCTTCGGAGTATTCGTTCA 58.491 45.455 0.00 0.00 39.02 3.18
648 720 4.113354 GCTTCTTCGGAGTATTCGTTCAT 58.887 43.478 0.00 0.00 39.02 2.57
649 721 4.026475 GCTTCTTCGGAGTATTCGTTCATG 60.026 45.833 0.00 0.00 39.02 3.07
650 722 4.713824 TCTTCGGAGTATTCGTTCATGT 57.286 40.909 0.00 0.00 39.02 3.21
651 723 4.669318 TCTTCGGAGTATTCGTTCATGTC 58.331 43.478 0.00 0.00 39.02 3.06
652 724 4.398358 TCTTCGGAGTATTCGTTCATGTCT 59.602 41.667 0.00 0.00 39.02 3.41
653 725 5.587443 TCTTCGGAGTATTCGTTCATGTCTA 59.413 40.000 0.00 0.00 39.02 2.59
654 726 5.419760 TCGGAGTATTCGTTCATGTCTAG 57.580 43.478 0.00 0.00 39.02 2.43
657 729 5.853810 CGGAGTATTCGTTCATGTCTAGATG 59.146 44.000 0.00 0.00 27.50 2.90
658 730 5.631512 GGAGTATTCGTTCATGTCTAGATGC 59.368 44.000 0.00 0.00 0.00 3.91
659 731 5.215903 AGTATTCGTTCATGTCTAGATGCG 58.784 41.667 0.00 0.00 0.00 4.73
660 732 1.840181 TCGTTCATGTCTAGATGCGC 58.160 50.000 0.00 0.00 0.00 6.09
661 733 0.500178 CGTTCATGTCTAGATGCGCG 59.500 55.000 0.00 0.00 0.00 6.86
662 734 1.560923 GTTCATGTCTAGATGCGCGT 58.439 50.000 8.43 0.00 0.00 6.01
663 735 1.927174 GTTCATGTCTAGATGCGCGTT 59.073 47.619 8.43 0.00 0.00 4.84
664 736 3.113322 GTTCATGTCTAGATGCGCGTTA 58.887 45.455 8.43 0.00 0.00 3.18
665 737 2.727777 TCATGTCTAGATGCGCGTTAC 58.272 47.619 8.43 0.92 0.00 2.50
666 738 2.098443 TCATGTCTAGATGCGCGTTACA 59.902 45.455 8.43 7.02 0.00 2.41
667 739 2.640346 TGTCTAGATGCGCGTTACAA 57.360 45.000 8.43 0.00 0.00 2.41
668 740 3.159353 TGTCTAGATGCGCGTTACAAT 57.841 42.857 8.43 0.00 0.00 2.71
669 741 4.295857 TGTCTAGATGCGCGTTACAATA 57.704 40.909 8.43 0.00 0.00 1.90
670 742 4.287720 TGTCTAGATGCGCGTTACAATAG 58.712 43.478 8.43 4.93 0.00 1.73
677 749 0.925466 CGCGTTACAATAGTTCCCCG 59.075 55.000 0.00 0.00 0.00 5.73
681 753 0.178533 TTACAATAGTTCCCCGCCCG 59.821 55.000 0.00 0.00 0.00 6.13
683 755 3.087906 AATAGTTCCCCGCCCGCT 61.088 61.111 0.00 0.00 0.00 5.52
711 786 2.435059 GGCACTTGAGCTCGGGAC 60.435 66.667 9.64 0.00 34.17 4.46
714 789 1.734477 CACTTGAGCTCGGGACACG 60.734 63.158 9.64 0.00 46.11 4.49
723 798 3.186047 CGGGACACGGTCAATCGC 61.186 66.667 6.41 0.00 39.42 4.58
726 801 2.740714 GGACACGGTCAATCGCTGC 61.741 63.158 6.41 0.00 33.68 5.25
778 861 1.417288 ACGGCTGATCTGATGATGGA 58.583 50.000 0.00 0.00 32.19 3.41
781 864 2.224233 CGGCTGATCTGATGATGGAGTT 60.224 50.000 3.42 0.00 32.19 3.01
782 865 3.743584 CGGCTGATCTGATGATGGAGTTT 60.744 47.826 3.42 0.00 32.19 2.66
783 866 3.814283 GGCTGATCTGATGATGGAGTTTC 59.186 47.826 3.42 0.00 32.19 2.78
784 867 3.493877 GCTGATCTGATGATGGAGTTTCG 59.506 47.826 3.42 0.00 32.19 3.46
797 880 2.876550 GGAGTTTCGTTGGTGTAAAGCT 59.123 45.455 0.00 0.00 0.00 3.74
798 881 3.059120 GGAGTTTCGTTGGTGTAAAGCTC 60.059 47.826 0.00 0.00 0.00 4.09
799 882 3.537580 AGTTTCGTTGGTGTAAAGCTCA 58.462 40.909 0.00 0.00 0.00 4.26
800 883 3.560068 AGTTTCGTTGGTGTAAAGCTCAG 59.440 43.478 0.00 0.00 0.00 3.35
801 884 1.508632 TCGTTGGTGTAAAGCTCAGC 58.491 50.000 0.00 0.00 0.00 4.26
871 954 2.881074 TGCTCTGTTTATCTCTGCGTC 58.119 47.619 0.00 0.00 0.00 5.19
876 959 3.119459 TCTGTTTATCTCTGCGTCTCCAC 60.119 47.826 0.00 0.00 0.00 4.02
879 962 3.784701 TTATCTCTGCGTCTCCACTTC 57.215 47.619 0.00 0.00 0.00 3.01
902 985 8.728337 TTCCAAGAGTCATGATTTCTAATCTG 57.272 34.615 11.68 7.50 0.00 2.90
903 986 8.082672 TCCAAGAGTCATGATTTCTAATCTGA 57.917 34.615 11.68 4.22 0.00 3.27
932 1129 4.686191 AGATAGACAAGATTCAGCAGGG 57.314 45.455 0.00 0.00 0.00 4.45
933 1130 3.390639 AGATAGACAAGATTCAGCAGGGG 59.609 47.826 0.00 0.00 0.00 4.79
967 1164 2.223433 GCAATGATTACAGCTCCTGCAC 60.223 50.000 0.00 0.00 42.74 4.57
989 1187 2.224378 GCTGCTGGCATCTCCTTACATA 60.224 50.000 0.00 0.00 41.35 2.29
1124 1323 2.621070 AGGTGTAGTGGAGGTTCATGT 58.379 47.619 0.00 0.00 0.00 3.21
1170 1370 3.424703 CTGTTCCACCACTCCATCATTT 58.575 45.455 0.00 0.00 0.00 2.32
1186 1386 6.944290 TCCATCATTTCCCTTTGCTATCATAG 59.056 38.462 0.00 0.00 0.00 2.23
1212 1412 1.569708 CTCTTGCATCTCCGCTCTTC 58.430 55.000 0.00 0.00 0.00 2.87
1216 1416 1.522580 GCATCTCCGCTCTTCCCAC 60.523 63.158 0.00 0.00 0.00 4.61
1275 1482 1.618343 CCAACATGTCCTTGGTTTCCC 59.382 52.381 0.00 0.00 34.50 3.97
1294 1501 7.339482 GTTTCCCTTGATATAGTTGGAGAAGT 58.661 38.462 0.00 0.00 0.00 3.01
1298 1505 4.322080 TGATATAGTTGGAGAAGTGGCG 57.678 45.455 0.00 0.00 0.00 5.69
1348 1555 9.107177 TGTGCACTGATTTTTCAACAAAATAAT 57.893 25.926 19.41 0.00 31.39 1.28
1364 1571 6.529125 ACAAAATAATGTCGTACTGAGTACCG 59.471 38.462 16.45 11.66 35.81 4.02
1369 1739 4.771590 TGTCGTACTGAGTACCGAATTT 57.228 40.909 16.45 0.00 35.81 1.82
1426 1796 5.529060 AGAAAACAGTTGACTAGAAAGCTGG 59.471 40.000 14.25 0.00 0.00 4.85
1427 1797 3.409026 ACAGTTGACTAGAAAGCTGGG 57.591 47.619 14.25 0.00 0.00 4.45
1441 1811 1.852067 GCTGGGCCAAACGTACAGTG 61.852 60.000 8.04 0.00 0.00 3.66
1470 1843 6.707608 GGAACCTTCAATCTTTTGCTGAAAAT 59.292 34.615 0.00 0.00 30.59 1.82
1531 1904 8.876790 GTTTAGCGTGTAAAGATGTAACCTAAT 58.123 33.333 0.00 0.00 0.00 1.73
1533 1906 9.740239 TTAGCGTGTAAAGATGTAACCTAATAG 57.260 33.333 0.00 0.00 0.00 1.73
1580 1953 1.561542 TCTTTCTGAGATCCAAGCCCC 59.438 52.381 0.00 0.00 0.00 5.80
1593 1966 4.201122 GCCCCTCTGCCCTCATGG 62.201 72.222 0.00 0.00 37.09 3.66
1706 2079 5.403466 GTGTCCACTGATTTTTCAGCAAATC 59.597 40.000 2.98 1.31 41.68 2.17
1763 2137 7.667043 TCAGTTACATGGATTCACACTAAAC 57.333 36.000 0.00 0.00 0.00 2.01
1942 2333 5.067954 TCAAACCCATATGAGCTCATGATG 58.932 41.667 34.48 28.46 37.15 3.07
1980 2377 3.403038 TCTCAGAACCTTTAAGTGCAGC 58.597 45.455 0.00 0.00 0.00 5.25
1995 2392 2.738846 GTGCAGCCGAGTCATATTATGG 59.261 50.000 3.89 0.00 0.00 2.74
2005 2402 6.313905 CCGAGTCATATTATGGTTGGCTTATC 59.686 42.308 3.89 0.00 0.00 1.75
2496 2903 3.749226 TCCATGTGTTTGCTGACATGTA 58.251 40.909 0.00 0.00 45.36 2.29
2503 2910 5.648960 TGTGTTTGCTGACATGTATGATCAT 59.351 36.000 13.81 13.81 0.00 2.45
2558 2966 7.765695 AATTGCTGATTTCTTTCAAGGTAGA 57.234 32.000 0.00 0.00 0.00 2.59
2605 3014 5.556915 TGGTGACCTTTTTCTATGAATCGT 58.443 37.500 2.11 0.00 0.00 3.73
2673 3103 3.507622 ACTAGCTCCCTGCAAACATTTTC 59.492 43.478 0.00 0.00 45.94 2.29
2808 3238 6.538021 ACACTGCATATTCTTAAGCTCAGAAG 59.462 38.462 12.53 5.76 33.74 2.85
2809 3239 6.760298 CACTGCATATTCTTAAGCTCAGAAGA 59.240 38.462 12.53 9.20 33.74 2.87
2812 3242 8.151141 TGCATATTCTTAAGCTCAGAAGAATG 57.849 34.615 26.29 22.27 46.73 2.67
2813 3243 7.772292 TGCATATTCTTAAGCTCAGAAGAATGT 59.228 33.333 26.29 21.29 46.73 2.71
2814 3244 8.619546 GCATATTCTTAAGCTCAGAAGAATGTT 58.380 33.333 26.29 17.31 46.73 2.71
3089 3532 2.236395 ACAGTGCCAATACAGACCCTAC 59.764 50.000 0.00 0.00 0.00 3.18
3242 3685 4.564782 TCCTCATGAAGTTGAGAATGCT 57.435 40.909 0.00 0.00 44.88 3.79
3273 3716 6.151663 TGCTTACGGTAATTATCAGCTACA 57.848 37.500 0.29 0.00 0.00 2.74
3395 3846 7.293073 AGTTATGGTCTTATGGATTGCTGATT 58.707 34.615 0.00 0.00 0.00 2.57
3402 3853 7.196331 GTCTTATGGATTGCTGATTGTTTACC 58.804 38.462 0.00 0.00 0.00 2.85
3446 3897 8.215736 ACAACTCCATTAAGTAAGGTTACTGTT 58.784 33.333 3.15 0.00 42.86 3.16
3461 3912 3.063510 ACTGTTGACACTGCATGCTAT 57.936 42.857 20.33 3.57 0.00 2.97
3504 3955 4.022849 GTGTTTTCCCTCTTCATGGAAGTG 60.023 45.833 5.94 3.89 41.44 3.16
3659 4112 1.144057 CGCCGAGGCCAAGAACTAT 59.856 57.895 5.01 0.00 37.98 2.12
3746 4199 1.561542 AGGGATAGCCACAGGAAAGTG 59.438 52.381 0.00 0.00 39.21 3.16
3854 4307 3.788672 CGGGAGGATTTGGAAGGAG 57.211 57.895 0.00 0.00 0.00 3.69
3862 4315 2.290577 GGATTTGGAAGGAGCAGTGAGT 60.291 50.000 0.00 0.00 0.00 3.41
3863 4316 3.416156 GATTTGGAAGGAGCAGTGAGTT 58.584 45.455 0.00 0.00 0.00 3.01
3864 4317 4.565652 GGATTTGGAAGGAGCAGTGAGTTA 60.566 45.833 0.00 0.00 0.00 2.24
3865 4318 3.685139 TTGGAAGGAGCAGTGAGTTAG 57.315 47.619 0.00 0.00 0.00 2.34
3866 4319 2.609747 TGGAAGGAGCAGTGAGTTAGT 58.390 47.619 0.00 0.00 0.00 2.24
3867 4320 2.300152 TGGAAGGAGCAGTGAGTTAGTG 59.700 50.000 0.00 0.00 0.00 2.74
3868 4321 2.563179 GGAAGGAGCAGTGAGTTAGTGA 59.437 50.000 0.00 0.00 30.94 3.41
3869 4322 3.006967 GGAAGGAGCAGTGAGTTAGTGAA 59.993 47.826 0.00 0.00 30.94 3.18
3872 4325 3.643792 AGGAGCAGTGAGTTAGTGAACTT 59.356 43.478 0.00 0.00 46.23 2.66
3885 4339 5.351465 GTTAGTGAACTTTAGCTGCATGCTA 59.649 40.000 20.33 12.13 41.49 3.49
3886 4340 6.456181 GTTAGTGAACTTTAGCTGCATGCTAG 60.456 42.308 20.33 15.13 42.31 3.42
3887 4341 8.743186 GTTAGTGAACTTTAGCTGCATGCTAGT 61.743 40.741 20.33 9.36 42.31 2.57
3896 4350 1.736126 CTGCATGCTAGTGAAGGTGTG 59.264 52.381 20.33 0.00 0.00 3.82
3905 4359 0.529119 GTGAAGGTGTGTCCGTTCGT 60.529 55.000 0.00 0.00 41.99 3.85
3916 4370 1.203313 CCGTTCGTTTCGTTCTGGC 59.797 57.895 0.00 0.00 0.00 4.85
3925 4379 1.310216 TTCGTTCTGGCGATCCGAGA 61.310 55.000 0.00 0.00 40.76 4.04
3926 4380 1.101635 TCGTTCTGGCGATCCGAGAT 61.102 55.000 0.00 0.00 35.83 2.75
3931 4385 0.936764 CTGGCGATCCGAGATGAACG 60.937 60.000 0.00 0.00 34.14 3.95
3932 4386 1.065928 GGCGATCCGAGATGAACGT 59.934 57.895 0.00 0.00 33.63 3.99
3933 4387 0.309922 GGCGATCCGAGATGAACGTA 59.690 55.000 0.00 0.00 33.63 3.57
3934 4388 1.068472 GGCGATCCGAGATGAACGTAT 60.068 52.381 0.00 0.00 33.63 3.06
3935 4389 2.607282 GGCGATCCGAGATGAACGTATT 60.607 50.000 0.00 0.00 33.63 1.89
3936 4390 2.405357 GCGATCCGAGATGAACGTATTG 59.595 50.000 0.00 0.00 33.63 1.90
3937 4391 2.405357 CGATCCGAGATGAACGTATTGC 59.595 50.000 0.00 0.00 0.00 3.56
3939 4393 0.852777 CCGAGATGAACGTATTGCGG 59.147 55.000 0.00 0.00 46.52 5.69
3944 4424 0.828022 ATGAACGTATTGCGGGAGGA 59.172 50.000 0.00 0.00 46.52 3.71
3948 4428 0.175073 ACGTATTGCGGGAGGACTTC 59.825 55.000 0.00 0.00 46.52 3.01
3959 4439 3.570550 CGGGAGGACTTCATTAGGACTAG 59.429 52.174 0.00 0.00 0.00 2.57
3960 4440 3.898741 GGGAGGACTTCATTAGGACTAGG 59.101 52.174 0.00 0.00 0.00 3.02
3977 4457 4.028825 ACTAGGGGTAATGGTGTGTAGAC 58.971 47.826 0.00 0.00 0.00 2.59
3978 4458 2.193993 AGGGGTAATGGTGTGTAGACC 58.806 52.381 0.00 0.00 36.43 3.85
3981 4461 2.613691 GGTAATGGTGTGTAGACCGTG 58.386 52.381 0.00 0.00 39.07 4.94
3983 4463 2.922740 AATGGTGTGTAGACCGTGTT 57.077 45.000 0.00 0.00 39.07 3.32
3984 4464 4.321899 GGTAATGGTGTGTAGACCGTGTTA 60.322 45.833 0.00 0.00 39.07 2.41
3985 4465 3.587797 ATGGTGTGTAGACCGTGTTAG 57.412 47.619 0.00 0.00 39.07 2.34
3986 4466 1.000060 TGGTGTGTAGACCGTGTTAGC 60.000 52.381 0.00 0.00 39.07 3.09
3987 4467 1.271656 GGTGTGTAGACCGTGTTAGCT 59.728 52.381 0.00 0.00 0.00 3.32
3988 4468 2.288640 GGTGTGTAGACCGTGTTAGCTT 60.289 50.000 0.00 0.00 0.00 3.74
3989 4469 2.985139 GTGTGTAGACCGTGTTAGCTTC 59.015 50.000 0.00 0.00 0.00 3.86
3990 4470 2.248487 GTGTAGACCGTGTTAGCTTCG 58.752 52.381 0.00 0.00 0.00 3.79
3992 4472 2.248487 GTAGACCGTGTTAGCTTCGTG 58.752 52.381 0.00 0.00 0.00 4.35
3993 4473 0.038526 AGACCGTGTTAGCTTCGTGG 60.039 55.000 0.00 0.00 0.00 4.94
3994 4474 0.319297 GACCGTGTTAGCTTCGTGGT 60.319 55.000 0.00 0.00 0.00 4.16
3995 4475 0.961019 ACCGTGTTAGCTTCGTGGTA 59.039 50.000 0.00 0.00 0.00 3.25
3996 4476 1.068055 ACCGTGTTAGCTTCGTGGTAG 60.068 52.381 0.00 0.00 0.00 3.18
3997 4477 1.068055 CCGTGTTAGCTTCGTGGTAGT 60.068 52.381 0.00 0.00 0.00 2.73
3998 4478 2.608752 CCGTGTTAGCTTCGTGGTAGTT 60.609 50.000 0.00 0.00 0.00 2.24
3999 4479 2.407361 CGTGTTAGCTTCGTGGTAGTTG 59.593 50.000 0.00 0.00 0.00 3.16
4029 4512 0.382873 CATGGATGGTTGTCATGCGG 59.617 55.000 0.00 0.00 45.69 5.69
4031 4514 0.255604 TGGATGGTTGTCATGCGGAT 59.744 50.000 0.00 0.00 45.69 4.18
4032 4515 1.340893 TGGATGGTTGTCATGCGGATT 60.341 47.619 0.00 0.00 45.69 3.01
4051 4534 0.613260 TGAGGTGGTACTGATGTGGC 59.387 55.000 0.00 0.00 0.00 5.01
4074 4563 1.632409 AGCTGAAGGCAAATCTCCTGA 59.368 47.619 0.00 0.00 44.79 3.86
4096 4585 2.346766 TGCTTTGAACAAGAGCTGGA 57.653 45.000 0.00 2.35 37.32 3.86
4134 4623 1.164041 CCGTTTTGGCGAGGTCTTGT 61.164 55.000 0.00 0.00 0.00 3.16
4140 4629 1.070786 GGCGAGGTCTTGTTGGTGA 59.929 57.895 0.00 0.00 0.00 4.02
4144 4633 1.341531 CGAGGTCTTGTTGGTGACTCT 59.658 52.381 0.00 0.00 34.01 3.24
4204 4694 6.809689 AGACTCGTATCTATCTATGTCAGACG 59.190 42.308 0.00 0.00 35.62 4.18
4205 4695 6.457355 ACTCGTATCTATCTATGTCAGACGT 58.543 40.000 0.00 0.00 35.62 4.34
4206 4696 7.600960 ACTCGTATCTATCTATGTCAGACGTA 58.399 38.462 2.39 2.39 35.62 3.57
4207 4697 7.756272 ACTCGTATCTATCTATGTCAGACGTAG 59.244 40.741 20.18 20.18 38.69 3.51
4227 4717 6.421202 ACGTAGAAATGTTCTGAACTTCTGAC 59.579 38.462 24.15 18.47 40.94 3.51
4258 4748 7.709149 ATATGAATGAGACTCGTATCCATCA 57.291 36.000 0.00 0.00 0.00 3.07
4286 5723 6.986231 GTCAGACCCAAAAATGTTCTGAATTT 59.014 34.615 1.31 0.00 35.02 1.82
4287 5724 6.985645 TCAGACCCAAAAATGTTCTGAATTTG 59.014 34.615 7.05 7.05 30.98 2.32
4288 5725 6.985645 CAGACCCAAAAATGTTCTGAATTTGA 59.014 34.615 13.14 0.00 33.86 2.69
4289 5726 7.170320 CAGACCCAAAAATGTTCTGAATTTGAG 59.830 37.037 13.14 5.39 33.86 3.02
4290 5727 7.069826 AGACCCAAAAATGTTCTGAATTTGAGA 59.930 33.333 13.14 0.00 33.86 3.27
4291 5728 7.738847 ACCCAAAAATGTTCTGAATTTGAGAT 58.261 30.769 13.14 0.20 33.86 2.75
4292 5729 7.658575 ACCCAAAAATGTTCTGAATTTGAGATG 59.341 33.333 13.14 4.69 33.86 2.90
4293 5730 7.118680 CCCAAAAATGTTCTGAATTTGAGATGG 59.881 37.037 13.14 8.18 33.86 3.51
4294 5731 7.360607 CCAAAAATGTTCTGAATTTGAGATGGC 60.361 37.037 13.14 0.00 33.86 4.40
4295 5732 4.996788 ATGTTCTGAATTTGAGATGGCC 57.003 40.909 0.00 0.00 0.00 5.36
4296 5733 2.749076 TGTTCTGAATTTGAGATGGCCG 59.251 45.455 0.00 0.00 0.00 6.13
4297 5734 2.749621 GTTCTGAATTTGAGATGGCCGT 59.250 45.455 0.00 0.00 0.00 5.68
4298 5735 3.071874 TCTGAATTTGAGATGGCCGTT 57.928 42.857 0.00 0.00 0.00 4.44
4299 5736 3.420893 TCTGAATTTGAGATGGCCGTTT 58.579 40.909 0.00 0.00 0.00 3.60
4300 5737 3.440173 TCTGAATTTGAGATGGCCGTTTC 59.560 43.478 8.57 8.57 0.00 2.78
4301 5738 3.420893 TGAATTTGAGATGGCCGTTTCT 58.579 40.909 15.98 9.49 0.00 2.52
4302 5739 3.191162 TGAATTTGAGATGGCCGTTTCTG 59.809 43.478 15.98 0.00 0.00 3.02
4303 5740 2.559698 TTTGAGATGGCCGTTTCTGA 57.440 45.000 15.98 1.36 0.00 3.27
4304 5741 2.787473 TTGAGATGGCCGTTTCTGAT 57.213 45.000 15.98 0.00 0.00 2.90
4305 5742 2.028420 TGAGATGGCCGTTTCTGATG 57.972 50.000 15.98 0.00 0.00 3.07
4306 5743 0.659957 GAGATGGCCGTTTCTGATGC 59.340 55.000 8.25 0.00 0.00 3.91
4307 5744 0.254178 AGATGGCCGTTTCTGATGCT 59.746 50.000 0.00 0.00 0.00 3.79
4308 5745 0.659957 GATGGCCGTTTCTGATGCTC 59.340 55.000 0.00 0.00 0.00 4.26
4309 5746 0.749454 ATGGCCGTTTCTGATGCTCC 60.749 55.000 0.00 0.00 0.00 4.70
4310 5747 2.115291 GGCCGTTTCTGATGCTCCC 61.115 63.158 0.00 0.00 0.00 4.30
4311 5748 2.115291 GCCGTTTCTGATGCTCCCC 61.115 63.158 0.00 0.00 0.00 4.81
4312 5749 1.604378 CCGTTTCTGATGCTCCCCT 59.396 57.895 0.00 0.00 0.00 4.79
4313 5750 0.462759 CCGTTTCTGATGCTCCCCTC 60.463 60.000 0.00 0.00 0.00 4.30
4314 5751 0.539051 CGTTTCTGATGCTCCCCTCT 59.461 55.000 0.00 0.00 0.00 3.69
4323 5760 3.834813 TGATGCTCCCCTCTGTATATGAC 59.165 47.826 0.00 0.00 0.00 3.06
4371 5809 2.655090 TGTTCAGAATTCCTGGTGCA 57.345 45.000 0.65 0.00 43.12 4.57
4379 5817 4.885907 CAGAATTCCTGGTGCAGATATTGT 59.114 41.667 0.65 0.00 39.23 2.71
4445 5883 7.391554 TCCACTGGAATATGTCTTCTTCTTTTG 59.608 37.037 0.00 0.00 0.00 2.44
4470 5908 6.264088 GCATCAATCAGAAGATGTTTTCTCC 58.736 40.000 14.43 0.00 42.72 3.71
4472 5910 7.679164 GCATCAATCAGAAGATGTTTTCTCCTC 60.679 40.741 14.43 0.00 42.72 3.71
4503 5941 3.869065 TGAGAAACCTCGTTGTGACTTT 58.131 40.909 0.00 0.00 33.42 2.66
4590 6028 2.299013 GGACCCAAAAACCTCACATTCC 59.701 50.000 0.00 0.00 0.00 3.01
4686 6129 2.781174 AGGGACAGGGACAAAACAACTA 59.219 45.455 0.00 0.00 0.00 2.24
4718 6161 2.104451 GGGCATCATCTGAGTCAGACAT 59.896 50.000 24.93 16.35 43.63 3.06
4726 6169 3.282885 TCTGAGTCAGACATCATAGCGT 58.717 45.455 19.10 0.00 35.39 5.07
4782 6225 0.798776 CCAAACTGACCATCACTCGC 59.201 55.000 0.00 0.00 0.00 5.03
4791 6234 0.248825 CCATCACTCGCCGAAGAGAG 60.249 60.000 12.84 6.24 40.57 3.20
4792 6235 0.453793 CATCACTCGCCGAAGAGAGT 59.546 55.000 12.84 3.52 43.54 3.24
4808 6258 6.034790 CGAAGAGAGTTCATCAATGACTCTTG 59.965 42.308 20.39 12.96 42.68 3.02
4809 6259 6.357579 AGAGAGTTCATCAATGACTCTTGT 57.642 37.500 18.01 11.01 41.20 3.16
4834 6284 4.103785 CCTCATCCTAGAAACATCATGGGT 59.896 45.833 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 63 1.218047 GTGCGCTGATGAGTGGGTA 59.782 57.895 9.73 0.00 0.00 3.69
61 66 1.945387 AATAGTGCGCTGATGAGTGG 58.055 50.000 10.80 0.00 0.00 4.00
73 78 6.985188 TCTCTGTTCATTTGGTAATAGTGC 57.015 37.500 0.00 0.00 0.00 4.40
100 105 1.672854 GGGGCTGTTTTTATCGGGGC 61.673 60.000 0.00 0.00 0.00 5.80
115 120 1.000486 GGAAGGAAGGGAAAGGGGC 60.000 63.158 0.00 0.00 0.00 5.80
119 124 1.372501 TGGAGGGAAGGAAGGGAAAG 58.627 55.000 0.00 0.00 0.00 2.62
124 129 0.777446 TGGTTTGGAGGGAAGGAAGG 59.223 55.000 0.00 0.00 0.00 3.46
125 130 2.628178 GTTTGGTTTGGAGGGAAGGAAG 59.372 50.000 0.00 0.00 0.00 3.46
126 131 2.673258 GTTTGGTTTGGAGGGAAGGAA 58.327 47.619 0.00 0.00 0.00 3.36
127 132 1.133294 GGTTTGGTTTGGAGGGAAGGA 60.133 52.381 0.00 0.00 0.00 3.36
187 203 2.990514 GTCGCCTCTTTCAGTCTTTCTC 59.009 50.000 0.00 0.00 0.00 2.87
215 231 3.738281 CGTCTCTGTCCTCTCTCTCTCTC 60.738 56.522 0.00 0.00 0.00 3.20
216 232 2.168521 CGTCTCTGTCCTCTCTCTCTCT 59.831 54.545 0.00 0.00 0.00 3.10
255 283 1.185733 GCGCGTTCGAATTAAAGCCG 61.186 55.000 8.43 0.00 38.10 5.52
293 321 3.237741 GGCTCGAGATGGGGAGGG 61.238 72.222 18.75 0.00 0.00 4.30
365 405 1.973812 GGCTGGCTGGTTTGACCTC 60.974 63.158 0.00 0.00 39.58 3.85
449 506 3.513680 AACAAAAACAGGGGAAACGAC 57.486 42.857 0.00 0.00 0.00 4.34
450 507 3.764972 AGAAACAAAAACAGGGGAAACGA 59.235 39.130 0.00 0.00 0.00 3.85
452 509 4.634004 CCAAGAAACAAAAACAGGGGAAAC 59.366 41.667 0.00 0.00 0.00 2.78
453 510 4.532521 TCCAAGAAACAAAAACAGGGGAAA 59.467 37.500 0.00 0.00 0.00 3.13
456 513 4.379652 CATCCAAGAAACAAAAACAGGGG 58.620 43.478 0.00 0.00 0.00 4.79
460 517 4.116747 ACGCATCCAAGAAACAAAAACA 57.883 36.364 0.00 0.00 0.00 2.83
461 518 4.679654 CCTACGCATCCAAGAAACAAAAAC 59.320 41.667 0.00 0.00 0.00 2.43
462 519 4.261825 CCCTACGCATCCAAGAAACAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
463 520 3.254657 CCCTACGCATCCAAGAAACAAAA 59.745 43.478 0.00 0.00 0.00 2.44
464 521 2.817258 CCCTACGCATCCAAGAAACAAA 59.183 45.455 0.00 0.00 0.00 2.83
500 571 4.868900 CGCGCGCCTCAAAATCCG 62.869 66.667 27.72 2.72 0.00 4.18
515 587 4.699522 AGCCAGAAACCCGGACGC 62.700 66.667 0.73 0.00 0.00 5.19
516 588 2.434359 GAGCCAGAAACCCGGACG 60.434 66.667 0.73 0.00 0.00 4.79
517 589 2.434359 CGAGCCAGAAACCCGGAC 60.434 66.667 0.73 0.00 0.00 4.79
518 590 3.702048 CCGAGCCAGAAACCCGGA 61.702 66.667 0.73 0.00 42.49 5.14
519 591 3.031417 ATCCGAGCCAGAAACCCGG 62.031 63.158 0.00 0.00 41.36 5.73
520 592 1.815421 CATCCGAGCCAGAAACCCG 60.815 63.158 0.00 0.00 0.00 5.28
521 593 2.115291 GCATCCGAGCCAGAAACCC 61.115 63.158 0.00 0.00 0.00 4.11
522 594 2.464459 CGCATCCGAGCCAGAAACC 61.464 63.158 0.00 0.00 36.29 3.27
523 595 3.093278 CGCATCCGAGCCAGAAAC 58.907 61.111 0.00 0.00 36.29 2.78
524 596 2.819595 GCGCATCCGAGCCAGAAA 60.820 61.111 0.30 0.00 36.29 2.52
580 652 1.176619 AAACCCTAACAGGCAACCGC 61.177 55.000 0.00 0.00 32.73 5.68
581 653 1.268625 GAAAACCCTAACAGGCAACCG 59.731 52.381 0.00 0.00 32.73 4.44
582 654 1.268625 CGAAAACCCTAACAGGCAACC 59.731 52.381 0.00 0.00 32.73 3.77
583 655 1.268625 CCGAAAACCCTAACAGGCAAC 59.731 52.381 0.00 0.00 32.73 4.17
584 656 1.133730 ACCGAAAACCCTAACAGGCAA 60.134 47.619 0.00 0.00 32.73 4.52
585 657 0.475044 ACCGAAAACCCTAACAGGCA 59.525 50.000 0.00 0.00 32.73 4.75
586 658 1.268625 CAACCGAAAACCCTAACAGGC 59.731 52.381 0.00 0.00 32.73 4.85
587 659 1.883926 CCAACCGAAAACCCTAACAGG 59.116 52.381 0.00 0.00 34.30 4.00
588 660 1.883926 CCCAACCGAAAACCCTAACAG 59.116 52.381 0.00 0.00 0.00 3.16
589 661 1.479021 CCCCAACCGAAAACCCTAACA 60.479 52.381 0.00 0.00 0.00 2.41
590 662 1.250328 CCCCAACCGAAAACCCTAAC 58.750 55.000 0.00 0.00 0.00 2.34
591 663 0.852155 ACCCCAACCGAAAACCCTAA 59.148 50.000 0.00 0.00 0.00 2.69
601 673 0.251608 AATCTCCCAAACCCCAACCG 60.252 55.000 0.00 0.00 0.00 4.44
606 678 1.623311 CCACAAAATCTCCCAAACCCC 59.377 52.381 0.00 0.00 0.00 4.95
607 679 1.001974 GCCACAAAATCTCCCAAACCC 59.998 52.381 0.00 0.00 0.00 4.11
612 684 2.978156 AGAAGCCACAAAATCTCCCA 57.022 45.000 0.00 0.00 0.00 4.37
617 689 2.814336 ACTCCGAAGAAGCCACAAAATC 59.186 45.455 0.00 0.00 0.00 2.17
630 702 4.673441 AGACATGAACGAATACTCCGAAG 58.327 43.478 0.00 0.00 0.00 3.79
633 705 5.419760 TCTAGACATGAACGAATACTCCG 57.580 43.478 0.00 0.00 0.00 4.63
637 709 4.143514 GCGCATCTAGACATGAACGAATAC 60.144 45.833 0.30 0.00 0.00 1.89
639 711 2.797156 GCGCATCTAGACATGAACGAAT 59.203 45.455 0.30 0.00 0.00 3.34
640 712 2.193447 GCGCATCTAGACATGAACGAA 58.807 47.619 0.30 0.00 0.00 3.85
642 714 0.500178 CGCGCATCTAGACATGAACG 59.500 55.000 8.75 0.00 0.00 3.95
643 715 1.560923 ACGCGCATCTAGACATGAAC 58.439 50.000 5.73 0.00 0.00 3.18
644 716 2.293677 AACGCGCATCTAGACATGAA 57.706 45.000 5.73 0.00 0.00 2.57
645 717 2.098443 TGTAACGCGCATCTAGACATGA 59.902 45.455 5.73 0.00 0.00 3.07
646 718 2.459934 TGTAACGCGCATCTAGACATG 58.540 47.619 5.73 0.00 0.00 3.21
647 719 2.863401 TGTAACGCGCATCTAGACAT 57.137 45.000 5.73 0.00 0.00 3.06
648 720 2.640346 TTGTAACGCGCATCTAGACA 57.360 45.000 5.73 0.00 0.00 3.41
649 721 4.288531 ACTATTGTAACGCGCATCTAGAC 58.711 43.478 5.73 0.00 0.00 2.59
650 722 4.563337 ACTATTGTAACGCGCATCTAGA 57.437 40.909 5.73 0.00 0.00 2.43
651 723 4.148348 GGAACTATTGTAACGCGCATCTAG 59.852 45.833 5.73 2.69 0.00 2.43
652 724 4.046462 GGAACTATTGTAACGCGCATCTA 58.954 43.478 5.73 0.00 0.00 1.98
653 725 2.864343 GGAACTATTGTAACGCGCATCT 59.136 45.455 5.73 0.00 0.00 2.90
654 726 2.033151 GGGAACTATTGTAACGCGCATC 60.033 50.000 5.73 0.00 0.00 3.91
657 729 0.654160 GGGGAACTATTGTAACGCGC 59.346 55.000 5.73 0.00 0.00 6.86
658 730 0.925466 CGGGGAACTATTGTAACGCG 59.075 55.000 3.53 3.53 34.32 6.01
659 731 0.654160 GCGGGGAACTATTGTAACGC 59.346 55.000 0.00 0.00 38.94 4.84
660 732 1.292992 GGCGGGGAACTATTGTAACG 58.707 55.000 0.00 0.00 0.00 3.18
661 733 1.671979 GGGCGGGGAACTATTGTAAC 58.328 55.000 0.00 0.00 0.00 2.50
662 734 0.178533 CGGGCGGGGAACTATTGTAA 59.821 55.000 0.00 0.00 0.00 2.41
663 735 1.824658 CGGGCGGGGAACTATTGTA 59.175 57.895 0.00 0.00 0.00 2.41
664 736 2.587889 CGGGCGGGGAACTATTGT 59.412 61.111 0.00 0.00 0.00 2.71
665 737 2.035237 TAGCGGGCGGGGAACTATTG 62.035 60.000 0.00 0.00 0.00 1.90
666 738 1.763256 TAGCGGGCGGGGAACTATT 60.763 57.895 0.00 0.00 0.00 1.73
667 739 2.123164 TAGCGGGCGGGGAACTAT 60.123 61.111 0.00 0.00 0.00 2.12
668 740 3.149648 GTAGCGGGCGGGGAACTA 61.150 66.667 0.00 0.00 0.00 2.24
703 778 1.810030 GATTGACCGTGTCCCGAGC 60.810 63.158 2.23 0.00 39.56 5.03
711 786 0.179137 TCTAGCAGCGATTGACCGTG 60.179 55.000 0.00 0.00 0.00 4.94
714 789 3.929610 GGATAATCTAGCAGCGATTGACC 59.070 47.826 5.93 5.60 33.47 4.02
723 798 4.106197 GCGATAACCGGATAATCTAGCAG 58.894 47.826 9.46 0.00 39.04 4.24
778 861 3.537580 TGAGCTTTACACCAACGAAACT 58.462 40.909 0.00 0.00 0.00 2.66
781 864 1.871039 GCTGAGCTTTACACCAACGAA 59.129 47.619 0.00 0.00 0.00 3.85
782 865 1.508632 GCTGAGCTTTACACCAACGA 58.491 50.000 0.00 0.00 0.00 3.85
783 866 0.517316 GGCTGAGCTTTACACCAACG 59.483 55.000 3.72 0.00 0.00 4.10
784 867 0.881796 GGGCTGAGCTTTACACCAAC 59.118 55.000 3.72 0.00 0.00 3.77
871 954 3.969287 TCATGACTCTTGGAAGTGGAG 57.031 47.619 0.00 0.00 0.00 3.86
876 959 8.828644 CAGATTAGAAATCATGACTCTTGGAAG 58.171 37.037 13.02 1.10 0.00 3.46
879 962 8.728337 TTCAGATTAGAAATCATGACTCTTGG 57.272 34.615 13.02 2.24 0.00 3.61
902 985 8.180920 GCTGAATCTTGTCTATCTTCCTTTTTC 58.819 37.037 0.00 0.00 0.00 2.29
903 986 7.667219 TGCTGAATCTTGTCTATCTTCCTTTTT 59.333 33.333 0.00 0.00 0.00 1.94
907 990 5.163322 CCTGCTGAATCTTGTCTATCTTCCT 60.163 44.000 0.00 0.00 0.00 3.36
909 992 5.055812 CCCTGCTGAATCTTGTCTATCTTC 58.944 45.833 0.00 0.00 0.00 2.87
911 994 3.390639 CCCCTGCTGAATCTTGTCTATCT 59.609 47.826 0.00 0.00 0.00 1.98
912 995 3.135530 ACCCCTGCTGAATCTTGTCTATC 59.864 47.826 0.00 0.00 0.00 2.08
913 996 3.118112 CACCCCTGCTGAATCTTGTCTAT 60.118 47.826 0.00 0.00 0.00 1.98
914 997 2.237143 CACCCCTGCTGAATCTTGTCTA 59.763 50.000 0.00 0.00 0.00 2.59
932 1129 1.273048 TCATTGCCAATCAACAGCACC 59.727 47.619 0.00 0.00 37.53 5.01
933 1130 2.728690 TCATTGCCAATCAACAGCAC 57.271 45.000 0.00 0.00 37.53 4.40
989 1187 7.451255 TCATCACATAAAACATCTTTCCACCTT 59.549 33.333 0.00 0.00 0.00 3.50
1087 1286 3.181455 ACACCTTGTATTGCACTCTCACA 60.181 43.478 0.00 0.00 0.00 3.58
1088 1287 3.403038 ACACCTTGTATTGCACTCTCAC 58.597 45.455 0.00 0.00 0.00 3.51
1089 1288 3.769739 ACACCTTGTATTGCACTCTCA 57.230 42.857 0.00 0.00 0.00 3.27
1090 1289 4.627467 CACTACACCTTGTATTGCACTCTC 59.373 45.833 0.00 0.00 31.66 3.20
1091 1290 4.563580 CCACTACACCTTGTATTGCACTCT 60.564 45.833 0.00 0.00 33.71 3.24
1124 1323 1.771646 GGAAAGGGGGTGGCACTTA 59.228 57.895 18.45 0.00 0.00 2.24
1170 1370 4.444876 GCAGGAACTATGATAGCAAAGGGA 60.445 45.833 0.00 0.00 36.02 4.20
1216 1416 6.074544 AGCTATAACTAGTAACCGCTTCAG 57.925 41.667 0.00 0.00 0.00 3.02
1275 1482 4.747108 CGCCACTTCTCCAACTATATCAAG 59.253 45.833 0.00 0.00 0.00 3.02
1294 1501 1.375908 GAGAACCACATCAGCGCCA 60.376 57.895 2.29 0.00 0.00 5.69
1348 1555 4.771590 AAATTCGGTACTCAGTACGACA 57.228 40.909 8.93 0.00 39.64 4.35
1426 1796 0.872388 CCTTCACTGTACGTTTGGCC 59.128 55.000 0.00 0.00 0.00 5.36
1427 1797 0.872388 CCCTTCACTGTACGTTTGGC 59.128 55.000 0.00 0.00 0.00 4.52
1470 1843 0.031857 CATGGCGCTTGTTTTCACCA 59.968 50.000 7.64 0.00 0.00 4.17
1580 1953 2.237143 TCAGTTAACCATGAGGGCAGAG 59.763 50.000 0.88 0.00 42.05 3.35
1593 1966 6.569780 AGAAAATGTTGGTTGGTCAGTTAAC 58.430 36.000 0.00 0.00 0.00 2.01
1639 2012 2.422479 CACATCAATGCCACTTCTCCAG 59.578 50.000 0.00 0.00 0.00 3.86
1683 2056 4.998671 TTTGCTGAAAAATCAGTGGACA 57.001 36.364 7.59 0.00 39.76 4.02
1700 2073 6.729187 AGTACTCAGAACAACTTTGATTTGC 58.271 36.000 0.00 0.00 0.00 3.68
1763 2137 4.272504 TCCGCTTTCTAGTCAACTGTTTTG 59.727 41.667 0.00 0.00 0.00 2.44
1820 2194 7.781548 ATATGCCATTTTTCAGCAAAAGATC 57.218 32.000 0.00 0.00 40.46 2.75
1942 2333 2.189342 GAGAGCACTAACGATGCAGAC 58.811 52.381 0.00 0.00 45.92 3.51
1980 2377 4.008074 AGCCAACCATAATATGACTCGG 57.992 45.455 1.10 0.00 0.00 4.63
1995 2392 8.372521 CAAACGTAAATTTCATGATAAGCCAAC 58.627 33.333 0.00 0.00 0.00 3.77
2532 2939 9.466497 TCTACCTTGAAAGAAATCAGCAATTAT 57.534 29.630 0.00 0.00 0.00 1.28
2533 2940 8.730680 GTCTACCTTGAAAGAAATCAGCAATTA 58.269 33.333 0.00 0.00 0.00 1.40
2545 2953 6.989155 TTTACCTCTGTCTACCTTGAAAGA 57.011 37.500 0.00 0.00 0.00 2.52
2558 2966 5.960704 ACCAAAACCCTATTTTACCTCTGT 58.039 37.500 0.00 0.00 0.00 3.41
2673 3103 7.810658 AGAAGACTGTTGCAATGTATAAGTTG 58.189 34.615 0.59 0.00 0.00 3.16
2809 3239 9.334947 CCTCTAGACACATTCATATCAAACATT 57.665 33.333 0.00 0.00 0.00 2.71
2811 3241 7.851228 ACCTCTAGACACATTCATATCAAACA 58.149 34.615 0.00 0.00 0.00 2.83
2812 3242 8.723942 AACCTCTAGACACATTCATATCAAAC 57.276 34.615 0.00 0.00 0.00 2.93
2813 3243 8.762645 AGAACCTCTAGACACATTCATATCAAA 58.237 33.333 0.00 0.00 0.00 2.69
2814 3244 8.311395 AGAACCTCTAGACACATTCATATCAA 57.689 34.615 0.00 0.00 0.00 2.57
2815 3245 7.904558 AGAACCTCTAGACACATTCATATCA 57.095 36.000 0.00 0.00 0.00 2.15
3059 3502 2.953466 ATTGGCACTGTGATTCATGC 57.047 45.000 12.86 2.72 37.35 4.06
3089 3532 3.435590 CCCGCATATGGGCAAGTG 58.564 61.111 14.08 0.55 43.70 3.16
3137 3580 8.417106 TCATCCTTCAAGTGATTCACTAGATAC 58.583 37.037 19.27 0.00 44.62 2.24
3242 3685 7.672240 TGATAATTACCGTAAGCATCCATGTA 58.328 34.615 10.32 0.00 0.00 2.29
3299 3742 4.541779 GATGTGAGGACTAATCTACTGCG 58.458 47.826 0.00 0.00 0.00 5.18
3395 3846 4.456535 AGTATGCACACACTTGGTAAACA 58.543 39.130 0.00 0.00 0.00 2.83
3402 3853 6.060028 AGTTGTTAAGTATGCACACACTTG 57.940 37.500 16.50 0.00 35.79 3.16
3446 3897 5.647225 TGAATAACAATAGCATGCAGTGTCA 59.353 36.000 21.98 8.17 0.00 3.58
3488 3939 2.836981 ACTCTCACTTCCATGAAGAGGG 59.163 50.000 10.62 3.07 41.71 4.30
3659 4112 0.395311 CGACCTCCAGGCTGTAGGTA 60.395 60.000 29.15 1.52 43.69 3.08
3713 4166 0.482887 TATCCCTGATGCTCCGAGGA 59.517 55.000 0.00 0.00 0.00 3.71
3746 4199 4.849329 CCGTCGTAGCTGTCCCGC 62.849 72.222 0.00 0.00 0.00 6.13
3840 4293 1.988107 TCACTGCTCCTTCCAAATCCT 59.012 47.619 0.00 0.00 0.00 3.24
3842 4295 3.064900 ACTCACTGCTCCTTCCAAATC 57.935 47.619 0.00 0.00 0.00 2.17
3854 4307 4.991687 AGCTAAAGTTCACTAACTCACTGC 59.008 41.667 0.00 0.00 45.37 4.40
3862 4315 4.685169 GCATGCAGCTAAAGTTCACTAA 57.315 40.909 14.21 0.00 41.15 2.24
3885 4339 0.249322 CGAACGGACACACCTTCACT 60.249 55.000 0.00 0.00 36.31 3.41
3886 4340 0.529119 ACGAACGGACACACCTTCAC 60.529 55.000 0.00 0.00 36.31 3.18
3887 4341 0.176219 AACGAACGGACACACCTTCA 59.824 50.000 0.00 0.00 36.31 3.02
3888 4342 1.259770 GAAACGAACGGACACACCTTC 59.740 52.381 0.00 0.00 36.31 3.46
3890 4344 0.872881 CGAAACGAACGGACACACCT 60.873 55.000 0.00 0.00 36.31 4.00
3892 4346 0.646895 AACGAAACGAACGGACACAC 59.353 50.000 0.00 0.00 34.93 3.82
3896 4350 0.505655 CCAGAACGAAACGAACGGAC 59.494 55.000 0.00 0.00 34.93 4.79
3905 4359 0.457853 CTCGGATCGCCAGAACGAAA 60.458 55.000 0.00 0.00 46.59 3.46
3916 4370 2.405357 GCAATACGTTCATCTCGGATCG 59.595 50.000 0.00 0.00 36.38 3.69
3925 4379 0.828022 TCCTCCCGCAATACGTTCAT 59.172 50.000 0.00 0.00 41.42 2.57
3926 4380 0.108520 GTCCTCCCGCAATACGTTCA 60.109 55.000 0.00 0.00 41.42 3.18
3931 4385 2.622064 ATGAAGTCCTCCCGCAATAC 57.378 50.000 0.00 0.00 0.00 1.89
3932 4386 3.071023 CCTAATGAAGTCCTCCCGCAATA 59.929 47.826 0.00 0.00 0.00 1.90
3933 4387 2.158755 CCTAATGAAGTCCTCCCGCAAT 60.159 50.000 0.00 0.00 0.00 3.56
3934 4388 1.209504 CCTAATGAAGTCCTCCCGCAA 59.790 52.381 0.00 0.00 0.00 4.85
3935 4389 0.830648 CCTAATGAAGTCCTCCCGCA 59.169 55.000 0.00 0.00 0.00 5.69
3936 4390 1.120530 TCCTAATGAAGTCCTCCCGC 58.879 55.000 0.00 0.00 0.00 6.13
3937 4391 2.389715 AGTCCTAATGAAGTCCTCCCG 58.610 52.381 0.00 0.00 0.00 5.14
3938 4392 3.898741 CCTAGTCCTAATGAAGTCCTCCC 59.101 52.174 0.00 0.00 0.00 4.30
3939 4393 3.898741 CCCTAGTCCTAATGAAGTCCTCC 59.101 52.174 0.00 0.00 0.00 4.30
3944 4424 5.607171 CCATTACCCCTAGTCCTAATGAAGT 59.393 44.000 10.16 0.00 31.02 3.01
3948 4428 4.658901 ACACCATTACCCCTAGTCCTAATG 59.341 45.833 0.00 0.00 0.00 1.90
3959 4439 1.134610 CGGTCTACACACCATTACCCC 60.135 57.143 0.00 0.00 36.01 4.95
3960 4440 1.551883 ACGGTCTACACACCATTACCC 59.448 52.381 0.00 0.00 36.01 3.69
3977 4457 1.068055 ACTACCACGAAGCTAACACGG 60.068 52.381 0.00 0.00 0.00 4.94
3978 4458 2.342910 ACTACCACGAAGCTAACACG 57.657 50.000 0.00 0.00 0.00 4.49
3981 4461 3.057033 TCTCCAACTACCACGAAGCTAAC 60.057 47.826 0.00 0.00 0.00 2.34
3983 4463 2.799017 TCTCCAACTACCACGAAGCTA 58.201 47.619 0.00 0.00 0.00 3.32
3984 4464 1.629043 TCTCCAACTACCACGAAGCT 58.371 50.000 0.00 0.00 0.00 3.74
3985 4465 2.271800 CATCTCCAACTACCACGAAGC 58.728 52.381 0.00 0.00 0.00 3.86
3986 4466 3.594603 ACATCTCCAACTACCACGAAG 57.405 47.619 0.00 0.00 0.00 3.79
3987 4467 4.312443 GAAACATCTCCAACTACCACGAA 58.688 43.478 0.00 0.00 0.00 3.85
3988 4468 3.306502 GGAAACATCTCCAACTACCACGA 60.307 47.826 0.00 0.00 35.36 4.35
3989 4469 3.000727 GGAAACATCTCCAACTACCACG 58.999 50.000 0.00 0.00 35.36 4.94
3990 4470 4.015872 TGGAAACATCTCCAACTACCAC 57.984 45.455 0.00 0.00 42.69 4.16
4023 4506 1.134401 AGTACCACCTCAATCCGCATG 60.134 52.381 0.00 0.00 0.00 4.06
4027 4510 2.168521 ACATCAGTACCACCTCAATCCG 59.831 50.000 0.00 0.00 0.00 4.18
4029 4512 3.535561 CCACATCAGTACCACCTCAATC 58.464 50.000 0.00 0.00 0.00 2.67
4031 4514 1.003118 GCCACATCAGTACCACCTCAA 59.997 52.381 0.00 0.00 0.00 3.02
4032 4515 0.613260 GCCACATCAGTACCACCTCA 59.387 55.000 0.00 0.00 0.00 3.86
4051 4534 2.015587 GGAGATTTGCCTTCAGCTCTG 58.984 52.381 0.00 0.00 44.23 3.35
4074 4563 3.638160 TCCAGCTCTTGTTCAAAGCAAAT 59.362 39.130 15.82 1.42 38.51 2.32
4121 4610 1.227823 CACCAACAAGACCTCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
4123 4612 0.249911 AGTCACCAACAAGACCTCGC 60.250 55.000 0.00 0.00 35.38 5.03
4124 4613 1.341531 AGAGTCACCAACAAGACCTCG 59.658 52.381 0.00 0.00 35.38 4.63
4125 4614 3.134458 CAAGAGTCACCAACAAGACCTC 58.866 50.000 0.00 0.00 35.38 3.85
4126 4615 2.158755 CCAAGAGTCACCAACAAGACCT 60.159 50.000 0.00 0.00 35.38 3.85
4127 4616 2.158813 TCCAAGAGTCACCAACAAGACC 60.159 50.000 0.00 0.00 35.38 3.85
4128 4617 2.872858 GTCCAAGAGTCACCAACAAGAC 59.127 50.000 0.00 0.00 35.02 3.01
4129 4618 2.771943 AGTCCAAGAGTCACCAACAAGA 59.228 45.455 0.00 0.00 0.00 3.02
4130 4619 2.874701 CAGTCCAAGAGTCACCAACAAG 59.125 50.000 0.00 0.00 0.00 3.16
4134 4623 4.764050 TTTACAGTCCAAGAGTCACCAA 57.236 40.909 0.00 0.00 0.00 3.67
4140 4629 6.109359 GCTACATCATTTACAGTCCAAGAGT 58.891 40.000 0.00 0.00 0.00 3.24
4144 4633 4.523083 GGGCTACATCATTTACAGTCCAA 58.477 43.478 0.00 0.00 31.14 3.53
4204 4694 6.616682 GCGTCAGAAGTTCAGAACATTTCTAC 60.617 42.308 15.85 12.48 38.11 2.59
4205 4695 5.405571 GCGTCAGAAGTTCAGAACATTTCTA 59.594 40.000 15.85 4.05 38.11 2.10
4206 4696 4.212214 GCGTCAGAAGTTCAGAACATTTCT 59.788 41.667 15.85 12.89 41.70 2.52
4207 4697 4.212214 AGCGTCAGAAGTTCAGAACATTTC 59.788 41.667 15.85 10.93 0.00 2.17
4227 4717 4.162072 CGAGTCTCATTCATATACCAGCG 58.838 47.826 0.00 0.00 0.00 5.18
4258 4748 3.951680 AGAACATTTTTGGGTCTGACGTT 59.048 39.130 1.07 0.00 0.00 3.99
4286 5723 2.013563 GCATCAGAAACGGCCATCTCA 61.014 52.381 2.24 0.00 0.00 3.27
4287 5724 0.659957 GCATCAGAAACGGCCATCTC 59.340 55.000 2.24 0.00 0.00 2.75
4288 5725 0.254178 AGCATCAGAAACGGCCATCT 59.746 50.000 2.24 0.00 0.00 2.90
4289 5726 0.659957 GAGCATCAGAAACGGCCATC 59.340 55.000 2.24 0.00 33.17 3.51
4290 5727 0.749454 GGAGCATCAGAAACGGCCAT 60.749 55.000 2.24 0.00 36.25 4.40
4291 5728 1.377202 GGAGCATCAGAAACGGCCA 60.377 57.895 2.24 0.00 36.25 5.36
4292 5729 2.115291 GGGAGCATCAGAAACGGCC 61.115 63.158 0.00 0.00 36.25 6.13
4293 5730 2.115291 GGGGAGCATCAGAAACGGC 61.115 63.158 0.00 0.00 36.25 5.68
4294 5731 0.462759 GAGGGGAGCATCAGAAACGG 60.463 60.000 0.00 0.00 36.25 4.44
4295 5732 0.539051 AGAGGGGAGCATCAGAAACG 59.461 55.000 0.00 0.00 36.25 3.60
4296 5733 1.280421 ACAGAGGGGAGCATCAGAAAC 59.720 52.381 0.00 0.00 36.25 2.78
4297 5734 1.661463 ACAGAGGGGAGCATCAGAAA 58.339 50.000 0.00 0.00 36.25 2.52
4298 5735 2.550277 TACAGAGGGGAGCATCAGAA 57.450 50.000 0.00 0.00 36.25 3.02
4299 5736 2.783379 ATACAGAGGGGAGCATCAGA 57.217 50.000 0.00 0.00 36.25 3.27
4300 5737 4.081752 GTCATATACAGAGGGGAGCATCAG 60.082 50.000 0.00 0.00 36.25 2.90
4301 5738 3.834813 GTCATATACAGAGGGGAGCATCA 59.165 47.826 0.00 0.00 36.25 3.07
4302 5739 3.834813 TGTCATATACAGAGGGGAGCATC 59.165 47.826 0.00 0.00 33.01 3.91
4303 5740 3.580458 GTGTCATATACAGAGGGGAGCAT 59.420 47.826 0.00 0.00 39.29 3.79
4304 5741 2.965831 GTGTCATATACAGAGGGGAGCA 59.034 50.000 0.00 0.00 39.29 4.26
4305 5742 3.235200 AGTGTCATATACAGAGGGGAGC 58.765 50.000 0.00 0.00 39.29 4.70
4306 5743 3.504134 CGAGTGTCATATACAGAGGGGAG 59.496 52.174 0.00 0.00 39.29 4.30
4307 5744 3.117625 ACGAGTGTCATATACAGAGGGGA 60.118 47.826 0.00 0.00 39.29 4.81
4308 5745 3.223435 ACGAGTGTCATATACAGAGGGG 58.777 50.000 0.00 0.00 39.29 4.79
4309 5746 6.576662 AATACGAGTGTCATATACAGAGGG 57.423 41.667 0.00 0.00 39.29 4.30
4310 5747 6.363626 GCAAATACGAGTGTCATATACAGAGG 59.636 42.308 0.00 0.00 39.29 3.69
4311 5748 6.918022 TGCAAATACGAGTGTCATATACAGAG 59.082 38.462 0.00 0.00 39.29 3.35
4312 5749 6.801575 TGCAAATACGAGTGTCATATACAGA 58.198 36.000 0.00 0.00 39.29 3.41
4313 5750 7.382218 TGATGCAAATACGAGTGTCATATACAG 59.618 37.037 0.00 0.00 39.29 2.74
4314 5751 7.206687 TGATGCAAATACGAGTGTCATATACA 58.793 34.615 0.00 0.00 35.06 2.29
4323 5760 1.331756 GGGCTGATGCAAATACGAGTG 59.668 52.381 0.00 0.00 41.91 3.51
4371 5809 3.118261 ACGGCCATCTCAACACAATATCT 60.118 43.478 2.24 0.00 0.00 1.98
4379 5817 1.071542 TCAGAAACGGCCATCTCAACA 59.928 47.619 2.24 0.00 0.00 3.33
4445 5883 6.205101 AGAAAACATCTTCTGATTGATGCC 57.795 37.500 16.11 7.58 42.57 4.40
4481 5919 3.536956 AGTCACAACGAGGTTTCTCAA 57.463 42.857 0.00 0.00 39.95 3.02
4495 5933 1.165907 CGCTGCCCTCAAAAGTCACA 61.166 55.000 0.00 0.00 0.00 3.58
4503 5941 4.344865 GGAACCCGCTGCCCTCAA 62.345 66.667 0.00 0.00 0.00 3.02
4567 6005 2.765689 TGTGAGGTTTTTGGGTCCAT 57.234 45.000 0.00 0.00 0.00 3.41
4606 6044 8.517062 TTTTTGTTCCCATGTTTTCATTTGAT 57.483 26.923 0.00 0.00 38.64 2.57
4607 6045 7.928307 TTTTTGTTCCCATGTTTTCATTTGA 57.072 28.000 0.00 0.00 38.64 2.69
4686 6129 2.024655 AGATGATGCCCCTTGATGTTGT 60.025 45.455 0.00 0.00 0.00 3.32
4718 6161 0.975556 TCTGGGCCTTGACGCTATGA 60.976 55.000 4.53 0.00 0.00 2.15
4726 6169 1.064463 CCTAATTGCTCTGGGCCTTGA 60.064 52.381 4.53 2.03 40.92 3.02
4782 6225 4.753233 AGTCATTGATGAACTCTCTTCGG 58.247 43.478 0.00 0.00 38.75 4.30
4791 6234 3.755378 AGGCACAAGAGTCATTGATGAAC 59.245 43.478 8.67 0.00 38.75 3.18
4792 6235 4.005650 GAGGCACAAGAGTCATTGATGAA 58.994 43.478 8.67 0.00 38.75 2.57
4808 6258 4.142609 TGATGTTTCTAGGATGAGGCAC 57.857 45.455 0.00 0.00 0.00 5.01
4809 6259 4.445305 CCATGATGTTTCTAGGATGAGGCA 60.445 45.833 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.