Multiple sequence alignment - TraesCS2B01G149400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G149400 chr2B 100.000 2166 0 0 1 2166 115910506 115908341 0.000000e+00 4000.0
1 TraesCS2B01G149400 chr2B 89.965 1156 112 3 1001 2155 751297996 751296844 0.000000e+00 1489.0
2 TraesCS2B01G149400 chr2B 98.016 756 14 1 1 756 115917348 115916594 0.000000e+00 1312.0
3 TraesCS2B01G149400 chr2B 97.619 756 18 0 1 756 115951567 115950812 0.000000e+00 1297.0
4 TraesCS2B01G149400 chr2B 95.131 267 7 5 737 998 473409607 473409872 1.370000e-112 416.0
5 TraesCS2B01G149400 chr2B 94.182 275 10 5 739 1007 554088192 554087918 4.920000e-112 414.0
6 TraesCS2B01G149400 chr2B 100.000 75 0 0 2397 2471 115908110 115908036 3.310000e-29 139.0
7 TraesCS2B01G149400 chr2B 96.000 75 3 0 2397 2471 751296773 751296699 3.340000e-24 122.0
8 TraesCS2B01G149400 chr6B 94.244 1164 65 2 1001 2163 478890069 478888907 0.000000e+00 1777.0
9 TraesCS2B01G149400 chr6B 93.186 998 60 5 6 1001 490281672 490280681 0.000000e+00 1459.0
10 TraesCS2B01G149400 chr6B 88.403 1121 127 3 1001 2119 590032359 590031240 0.000000e+00 1347.0
11 TraesCS2B01G149400 chr6B 87.188 1163 147 2 1001 2162 623435496 623436657 0.000000e+00 1321.0
12 TraesCS2B01G149400 chr6B 98.667 75 1 0 2397 2471 478888841 478888767 1.540000e-27 134.0
13 TraesCS2B01G149400 chr1D 90.309 1166 108 5 1001 2163 442404060 442402897 0.000000e+00 1522.0
14 TraesCS2B01G149400 chr1D 94.667 75 4 0 2397 2471 442402838 442402764 1.550000e-22 117.0
15 TraesCS2B01G149400 chr5B 89.888 1157 115 2 1001 2155 281238788 281239944 0.000000e+00 1487.0
16 TraesCS2B01G149400 chr5B 97.101 759 18 4 1 757 31486116 31485360 0.000000e+00 1277.0
17 TraesCS2B01G149400 chr5B 94.667 75 4 0 2397 2471 281240016 281240090 1.550000e-22 117.0
18 TraesCS2B01G149400 chr6A 89.243 1162 124 1 1001 2161 511532180 511533341 0.000000e+00 1452.0
19 TraesCS2B01G149400 chr6A 90.566 53 5 0 2402 2454 498021634 498021686 1.230000e-08 71.3
20 TraesCS2B01G149400 chr2A 89.243 1162 124 1 1001 2161 48199274 48200435 0.000000e+00 1452.0
21 TraesCS2B01G149400 chr2A 97.260 73 2 0 2397 2469 48209453 48209525 9.280000e-25 124.0
22 TraesCS2B01G149400 chr7B 88.975 1161 120 4 1001 2159 74322666 74321512 0.000000e+00 1428.0
23 TraesCS2B01G149400 chr7B 97.365 759 20 0 1 759 555442169 555442927 0.000000e+00 1291.0
24 TraesCS2B01G149400 chr7B 96.745 768 23 2 1 767 43594406 43593640 0.000000e+00 1279.0
25 TraesCS2B01G149400 chr7B 97.984 248 3 2 757 1003 178276270 178276024 1.760000e-116 429.0
26 TraesCS2B01G149400 chr7B 97.333 75 2 0 2397 2471 74321258 74321184 7.170000e-26 128.0
27 TraesCS2B01G149400 chr7B 93.651 63 4 0 2397 2459 742140207 742140145 7.270000e-16 95.3
28 TraesCS2B01G149400 chr4B 97.619 756 18 0 1 756 555228162 555227407 0.000000e+00 1297.0
29 TraesCS2B01G149400 chr4B 95.472 265 6 5 740 998 359811013 359811277 3.800000e-113 418.0
30 TraesCS2B01G149400 chr4B 87.719 57 7 0 2397 2453 567013452 567013396 1.590000e-07 67.6
31 TraesCS2B01G149400 chr1B 97.358 757 19 1 1 756 569907782 569908538 0.000000e+00 1286.0
32 TraesCS2B01G149400 chr1B 97.571 247 5 1 756 1001 177755215 177754969 2.940000e-114 422.0
33 TraesCS2B01G149400 chr1B 96.000 75 3 0 2397 2471 510817456 510817382 3.340000e-24 122.0
34 TraesCS2B01G149400 chr1B 96.000 75 3 0 2397 2471 533808795 533808869 3.340000e-24 122.0
35 TraesCS2B01G149400 chr3B 97.222 756 20 1 1 756 553701385 553702139 0.000000e+00 1279.0
36 TraesCS2B01G149400 chr3B 97.628 253 5 1 757 1008 419451879 419451627 1.360000e-117 433.0
37 TraesCS2B01G149400 chr3B 96.212 264 5 4 740 998 397879719 397879982 6.320000e-116 427.0
38 TraesCS2B01G149400 chr3B 94.485 272 10 4 740 1006 149215315 149215586 4.920000e-112 414.0
39 TraesCS2B01G149400 chr7D 96.000 75 3 0 2397 2471 76796642 76796716 3.340000e-24 122.0
40 TraesCS2B01G149400 chr7D 91.379 58 5 0 2398 2455 115151733 115151790 2.040000e-11 80.5
41 TraesCS2B01G149400 chr7D 91.228 57 5 0 2397 2453 154940371 154940315 7.330000e-11 78.7
42 TraesCS2B01G149400 chr7D 92.308 52 4 0 2397 2448 609173512 609173563 9.480000e-10 75.0
43 TraesCS2B01G149400 chr3D 96.000 75 3 0 2397 2471 593755329 593755255 3.340000e-24 122.0
44 TraesCS2B01G149400 chr4A 93.151 73 5 0 2397 2469 493997605 493997677 9.340000e-20 108.0
45 TraesCS2B01G149400 chr4A 85.333 75 11 0 2397 2471 676918234 676918160 7.330000e-11 78.7
46 TraesCS2B01G149400 chrUn 91.379 58 5 0 2397 2454 298399501 298399558 2.040000e-11 80.5
47 TraesCS2B01G149400 chr5D 91.379 58 5 0 2397 2454 89362006 89361949 2.040000e-11 80.5
48 TraesCS2B01G149400 chr5D 89.091 55 6 0 2397 2451 7614347 7614293 4.410000e-08 69.4
49 TraesCS2B01G149400 chr5D 87.719 57 7 0 2397 2453 365336737 365336793 1.590000e-07 67.6
50 TraesCS2B01G149400 chr4D 91.228 57 5 0 2397 2453 486552723 486552779 7.330000e-11 78.7
51 TraesCS2B01G149400 chr6D 87.273 55 7 0 2397 2451 25821392 25821338 2.050000e-06 63.9
52 TraesCS2B01G149400 chr1A 85.965 57 8 0 2397 2453 321857606 321857662 7.380000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G149400 chr2B 115908036 115910506 2470 True 2069.5 4000 100.0000 1 2471 2 chr2B.!!$R4 2470
1 TraesCS2B01G149400 chr2B 115916594 115917348 754 True 1312.0 1312 98.0160 1 756 1 chr2B.!!$R1 755
2 TraesCS2B01G149400 chr2B 115950812 115951567 755 True 1297.0 1297 97.6190 1 756 1 chr2B.!!$R2 755
3 TraesCS2B01G149400 chr2B 751296699 751297996 1297 True 805.5 1489 92.9825 1001 2471 2 chr2B.!!$R5 1470
4 TraesCS2B01G149400 chr6B 490280681 490281672 991 True 1459.0 1459 93.1860 6 1001 1 chr6B.!!$R1 995
5 TraesCS2B01G149400 chr6B 590031240 590032359 1119 True 1347.0 1347 88.4030 1001 2119 1 chr6B.!!$R2 1118
6 TraesCS2B01G149400 chr6B 623435496 623436657 1161 False 1321.0 1321 87.1880 1001 2162 1 chr6B.!!$F1 1161
7 TraesCS2B01G149400 chr6B 478888767 478890069 1302 True 955.5 1777 96.4555 1001 2471 2 chr6B.!!$R3 1470
8 TraesCS2B01G149400 chr1D 442402764 442404060 1296 True 819.5 1522 92.4880 1001 2471 2 chr1D.!!$R1 1470
9 TraesCS2B01G149400 chr5B 31485360 31486116 756 True 1277.0 1277 97.1010 1 757 1 chr5B.!!$R1 756
10 TraesCS2B01G149400 chr5B 281238788 281240090 1302 False 802.0 1487 92.2775 1001 2471 2 chr5B.!!$F1 1470
11 TraesCS2B01G149400 chr6A 511532180 511533341 1161 False 1452.0 1452 89.2430 1001 2161 1 chr6A.!!$F2 1160
12 TraesCS2B01G149400 chr2A 48199274 48200435 1161 False 1452.0 1452 89.2430 1001 2161 1 chr2A.!!$F1 1160
13 TraesCS2B01G149400 chr7B 555442169 555442927 758 False 1291.0 1291 97.3650 1 759 1 chr7B.!!$F1 758
14 TraesCS2B01G149400 chr7B 43593640 43594406 766 True 1279.0 1279 96.7450 1 767 1 chr7B.!!$R1 766
15 TraesCS2B01G149400 chr7B 74321184 74322666 1482 True 778.0 1428 93.1540 1001 2471 2 chr7B.!!$R4 1470
16 TraesCS2B01G149400 chr4B 555227407 555228162 755 True 1297.0 1297 97.6190 1 756 1 chr4B.!!$R1 755
17 TraesCS2B01G149400 chr1B 569907782 569908538 756 False 1286.0 1286 97.3580 1 756 1 chr1B.!!$F2 755
18 TraesCS2B01G149400 chr3B 553701385 553702139 754 False 1279.0 1279 97.2220 1 756 1 chr3B.!!$F3 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 870 0.035534 TCGTGTGCCATTGTATGCCT 60.036 50.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1706 0.324614 ATGAACACCAGATCCGCACA 59.675 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.411831 TGCTCATATTGGCTCCTACATAG 57.588 43.478 0.00 0.00 0.00 2.23
336 339 2.092321 GGAGACACCTGTAGAGCTCCTA 60.092 54.545 10.93 0.00 39.01 2.94
422 425 8.263640 GGGAGTTGCATAATCTCATAGTCATAT 58.736 37.037 0.00 0.00 0.00 1.78
491 494 4.575885 TCAAGTGCTAAGCTAACGGAATT 58.424 39.130 0.00 0.00 0.00 2.17
756 760 4.583871 CCTCTAGGGCATATTTCCATCAC 58.416 47.826 0.00 0.00 0.00 3.06
757 761 4.042062 CCTCTAGGGCATATTTCCATCACA 59.958 45.833 0.00 0.00 0.00 3.58
758 762 5.233083 TCTAGGGCATATTTCCATCACAG 57.767 43.478 0.00 0.00 0.00 3.66
759 763 2.590821 AGGGCATATTTCCATCACAGC 58.409 47.619 0.00 0.00 0.00 4.40
765 769 0.685458 ATTTCCATCACAGCCTGGGC 60.685 55.000 3.00 3.00 42.33 5.36
796 801 4.035208 GTGGATGTCGTTGAGTTTCTGTTT 59.965 41.667 0.00 0.00 0.00 2.83
802 807 5.151389 GTCGTTGAGTTTCTGTTTGTGTTT 58.849 37.500 0.00 0.00 0.00 2.83
814 819 3.491639 TGTTTGTGTTTCATCCGTAGTCG 59.508 43.478 0.00 0.00 0.00 4.18
824 829 2.106332 CGTAGTCGGATGGTGCCC 59.894 66.667 0.00 0.00 0.00 5.36
825 830 2.423898 CGTAGTCGGATGGTGCCCT 61.424 63.158 0.00 0.00 0.00 5.19
826 831 1.905512 GTAGTCGGATGGTGCCCTT 59.094 57.895 0.00 0.00 0.00 3.95
827 832 1.117150 GTAGTCGGATGGTGCCCTTA 58.883 55.000 0.00 0.00 0.00 2.69
828 833 1.692519 GTAGTCGGATGGTGCCCTTAT 59.307 52.381 0.00 0.00 0.00 1.73
829 834 0.469917 AGTCGGATGGTGCCCTTATG 59.530 55.000 0.00 0.00 0.00 1.90
830 835 0.180406 GTCGGATGGTGCCCTTATGT 59.820 55.000 0.00 0.00 0.00 2.29
831 836 1.414919 GTCGGATGGTGCCCTTATGTA 59.585 52.381 0.00 0.00 0.00 2.29
832 837 2.120312 TCGGATGGTGCCCTTATGTAA 58.880 47.619 0.00 0.00 0.00 2.41
833 838 2.104111 TCGGATGGTGCCCTTATGTAAG 59.896 50.000 0.00 0.00 0.00 2.34
834 839 2.104111 CGGATGGTGCCCTTATGTAAGA 59.896 50.000 1.42 0.00 35.33 2.10
835 840 3.244561 CGGATGGTGCCCTTATGTAAGAT 60.245 47.826 1.42 0.00 35.33 2.40
836 841 4.074970 GGATGGTGCCCTTATGTAAGATG 58.925 47.826 1.42 0.00 35.33 2.90
837 842 4.202461 GGATGGTGCCCTTATGTAAGATGA 60.202 45.833 1.42 0.00 35.33 2.92
838 843 5.515534 GGATGGTGCCCTTATGTAAGATGAT 60.516 44.000 1.42 0.00 35.33 2.45
839 844 4.717877 TGGTGCCCTTATGTAAGATGATG 58.282 43.478 1.42 0.00 35.33 3.07
840 845 4.165950 TGGTGCCCTTATGTAAGATGATGT 59.834 41.667 1.42 0.00 35.33 3.06
841 846 5.133221 GGTGCCCTTATGTAAGATGATGTT 58.867 41.667 1.42 0.00 35.33 2.71
842 847 5.009010 GGTGCCCTTATGTAAGATGATGTTG 59.991 44.000 1.42 0.00 35.33 3.33
843 848 5.590259 GTGCCCTTATGTAAGATGATGTTGT 59.410 40.000 1.42 0.00 35.33 3.32
844 849 6.765989 GTGCCCTTATGTAAGATGATGTTGTA 59.234 38.462 1.42 0.00 35.33 2.41
845 850 7.445402 GTGCCCTTATGTAAGATGATGTTGTAT 59.555 37.037 1.42 0.00 35.33 2.29
846 851 7.998383 TGCCCTTATGTAAGATGATGTTGTATT 59.002 33.333 1.42 0.00 35.33 1.89
847 852 8.507249 GCCCTTATGTAAGATGATGTTGTATTC 58.493 37.037 1.42 0.00 35.33 1.75
848 853 8.712363 CCCTTATGTAAGATGATGTTGTATTCG 58.288 37.037 1.42 0.00 35.33 3.34
849 854 9.261180 CCTTATGTAAGATGATGTTGTATTCGT 57.739 33.333 1.42 0.00 35.33 3.85
851 856 9.594478 TTATGTAAGATGATGTTGTATTCGTGT 57.406 29.630 0.00 0.00 0.00 4.49
852 857 7.289587 TGTAAGATGATGTTGTATTCGTGTG 57.710 36.000 0.00 0.00 0.00 3.82
853 858 4.864916 AGATGATGTTGTATTCGTGTGC 57.135 40.909 0.00 0.00 0.00 4.57
854 859 3.623060 AGATGATGTTGTATTCGTGTGCC 59.377 43.478 0.00 0.00 0.00 5.01
855 860 2.772287 TGATGTTGTATTCGTGTGCCA 58.228 42.857 0.00 0.00 0.00 4.92
856 861 3.342719 TGATGTTGTATTCGTGTGCCAT 58.657 40.909 0.00 0.00 0.00 4.40
857 862 3.755905 TGATGTTGTATTCGTGTGCCATT 59.244 39.130 0.00 0.00 0.00 3.16
858 863 3.550950 TGTTGTATTCGTGTGCCATTG 57.449 42.857 0.00 0.00 0.00 2.82
859 864 2.881513 TGTTGTATTCGTGTGCCATTGT 59.118 40.909 0.00 0.00 0.00 2.71
860 865 4.065789 TGTTGTATTCGTGTGCCATTGTA 58.934 39.130 0.00 0.00 0.00 2.41
861 866 4.697828 TGTTGTATTCGTGTGCCATTGTAT 59.302 37.500 0.00 0.00 0.00 2.29
862 867 4.873768 TGTATTCGTGTGCCATTGTATG 57.126 40.909 0.00 0.00 0.00 2.39
863 868 2.849880 ATTCGTGTGCCATTGTATGC 57.150 45.000 0.00 0.00 0.00 3.14
864 869 0.808125 TTCGTGTGCCATTGTATGCC 59.192 50.000 0.00 0.00 0.00 4.40
865 870 0.035534 TCGTGTGCCATTGTATGCCT 60.036 50.000 0.00 0.00 0.00 4.75
866 871 0.378257 CGTGTGCCATTGTATGCCTC 59.622 55.000 0.00 0.00 0.00 4.70
867 872 1.755179 GTGTGCCATTGTATGCCTCT 58.245 50.000 0.00 0.00 0.00 3.69
868 873 2.094675 GTGTGCCATTGTATGCCTCTT 58.905 47.619 0.00 0.00 0.00 2.85
869 874 2.093890 TGTGCCATTGTATGCCTCTTG 58.906 47.619 0.00 0.00 0.00 3.02
870 875 2.094675 GTGCCATTGTATGCCTCTTGT 58.905 47.619 0.00 0.00 0.00 3.16
871 876 3.278574 GTGCCATTGTATGCCTCTTGTA 58.721 45.455 0.00 0.00 0.00 2.41
872 877 3.885297 GTGCCATTGTATGCCTCTTGTAT 59.115 43.478 0.00 0.00 0.00 2.29
873 878 3.884693 TGCCATTGTATGCCTCTTGTATG 59.115 43.478 0.00 0.00 0.00 2.39
874 879 3.885297 GCCATTGTATGCCTCTTGTATGT 59.115 43.478 0.00 0.00 0.00 2.29
875 880 5.063204 GCCATTGTATGCCTCTTGTATGTA 58.937 41.667 0.00 0.00 0.00 2.29
876 881 5.707298 GCCATTGTATGCCTCTTGTATGTAT 59.293 40.000 0.00 0.00 0.00 2.29
877 882 6.128172 GCCATTGTATGCCTCTTGTATGTATC 60.128 42.308 0.00 0.00 0.00 2.24
878 883 6.372659 CCATTGTATGCCTCTTGTATGTATCC 59.627 42.308 0.00 0.00 0.00 2.59
879 884 5.483685 TGTATGCCTCTTGTATGTATCCC 57.516 43.478 0.00 0.00 0.00 3.85
880 885 4.286032 TGTATGCCTCTTGTATGTATCCCC 59.714 45.833 0.00 0.00 0.00 4.81
881 886 2.770447 TGCCTCTTGTATGTATCCCCA 58.230 47.619 0.00 0.00 0.00 4.96
882 887 3.326521 TGCCTCTTGTATGTATCCCCAT 58.673 45.455 0.00 0.00 0.00 4.00
883 888 3.327757 TGCCTCTTGTATGTATCCCCATC 59.672 47.826 0.00 0.00 0.00 3.51
884 889 3.584848 GCCTCTTGTATGTATCCCCATCT 59.415 47.826 0.00 0.00 0.00 2.90
885 890 4.777896 GCCTCTTGTATGTATCCCCATCTA 59.222 45.833 0.00 0.00 0.00 1.98
886 891 5.426833 GCCTCTTGTATGTATCCCCATCTAT 59.573 44.000 0.00 0.00 0.00 1.98
887 892 6.069963 GCCTCTTGTATGTATCCCCATCTATT 60.070 42.308 0.00 0.00 0.00 1.73
888 893 7.125811 GCCTCTTGTATGTATCCCCATCTATTA 59.874 40.741 0.00 0.00 0.00 0.98
889 894 9.218525 CCTCTTGTATGTATCCCCATCTATTAT 57.781 37.037 0.00 0.00 0.00 1.28
891 896 9.560860 TCTTGTATGTATCCCCATCTATTATGT 57.439 33.333 0.00 0.00 0.00 2.29
898 903 9.958180 TGTATCCCCATCTATTATGTAATGTTG 57.042 33.333 0.00 0.00 0.00 3.33
901 906 9.690913 ATCCCCATCTATTATGTAATGTTGATG 57.309 33.333 12.75 12.75 33.83 3.07
902 907 8.668653 TCCCCATCTATTATGTAATGTTGATGT 58.331 33.333 15.51 0.00 33.12 3.06
903 908 9.958180 CCCCATCTATTATGTAATGTTGATGTA 57.042 33.333 15.51 0.00 33.12 2.29
915 920 9.283768 TGTAATGTTGATGTAATGATATCCACC 57.716 33.333 0.00 0.00 0.00 4.61
916 921 9.507329 GTAATGTTGATGTAATGATATCCACCT 57.493 33.333 0.00 0.00 0.00 4.00
918 923 7.806409 TGTTGATGTAATGATATCCACCTTG 57.194 36.000 0.00 0.00 0.00 3.61
919 924 6.262944 TGTTGATGTAATGATATCCACCTTGC 59.737 38.462 0.00 0.00 0.00 4.01
920 925 5.939447 TGATGTAATGATATCCACCTTGCA 58.061 37.500 0.00 0.00 0.00 4.08
921 926 6.363882 TGATGTAATGATATCCACCTTGCAA 58.636 36.000 0.00 0.00 0.00 4.08
922 927 6.832900 TGATGTAATGATATCCACCTTGCAAA 59.167 34.615 0.00 0.00 0.00 3.68
923 928 7.341512 TGATGTAATGATATCCACCTTGCAAAA 59.658 33.333 0.00 0.00 0.00 2.44
924 929 7.099266 TGTAATGATATCCACCTTGCAAAAG 57.901 36.000 0.00 0.00 0.00 2.27
925 930 4.660789 ATGATATCCACCTTGCAAAAGC 57.339 40.909 0.00 0.00 0.00 3.51
926 931 2.423185 TGATATCCACCTTGCAAAAGCG 59.577 45.455 0.00 0.00 0.00 4.68
927 932 1.904287 TATCCACCTTGCAAAAGCGT 58.096 45.000 0.00 0.00 0.00 5.07
928 933 1.039856 ATCCACCTTGCAAAAGCGTT 58.960 45.000 0.00 0.00 0.00 4.84
929 934 0.820871 TCCACCTTGCAAAAGCGTTT 59.179 45.000 0.00 0.00 0.00 3.60
930 935 1.202359 TCCACCTTGCAAAAGCGTTTC 60.202 47.619 0.00 0.00 0.00 2.78
931 936 1.470632 CCACCTTGCAAAAGCGTTTCA 60.471 47.619 0.00 0.00 0.00 2.69
932 937 2.266554 CACCTTGCAAAAGCGTTTCAA 58.733 42.857 0.00 2.83 0.00 2.69
933 938 2.865551 CACCTTGCAAAAGCGTTTCAAT 59.134 40.909 0.00 0.00 0.00 2.57
934 939 4.047822 CACCTTGCAAAAGCGTTTCAATA 58.952 39.130 0.00 0.00 0.00 1.90
935 940 4.685628 CACCTTGCAAAAGCGTTTCAATAT 59.314 37.500 0.00 0.00 0.00 1.28
936 941 4.685628 ACCTTGCAAAAGCGTTTCAATATG 59.314 37.500 0.00 0.00 0.00 1.78
937 942 4.434593 CCTTGCAAAAGCGTTTCAATATGC 60.435 41.667 0.00 0.00 0.00 3.14
938 943 2.660715 TGCAAAAGCGTTTCAATATGCG 59.339 40.909 0.00 0.00 35.40 4.73
939 944 2.027926 GCAAAAGCGTTTCAATATGCGG 59.972 45.455 0.00 0.00 35.20 5.69
940 945 3.241701 CAAAAGCGTTTCAATATGCGGT 58.758 40.909 0.00 0.00 35.20 5.68
941 946 3.569250 AAAGCGTTTCAATATGCGGTT 57.431 38.095 0.00 0.00 44.97 4.44
942 947 2.825086 AGCGTTTCAATATGCGGTTC 57.175 45.000 0.00 0.00 35.20 3.62
943 948 2.356135 AGCGTTTCAATATGCGGTTCT 58.644 42.857 0.00 0.00 35.20 3.01
944 949 3.527533 AGCGTTTCAATATGCGGTTCTA 58.472 40.909 0.00 0.00 35.20 2.10
945 950 4.127171 AGCGTTTCAATATGCGGTTCTAT 58.873 39.130 0.00 0.00 35.20 1.98
946 951 4.211374 AGCGTTTCAATATGCGGTTCTATC 59.789 41.667 0.00 0.00 35.20 2.08
947 952 4.610680 GCGTTTCAATATGCGGTTCTATCC 60.611 45.833 0.00 0.00 0.00 2.59
948 953 4.750098 CGTTTCAATATGCGGTTCTATCCT 59.250 41.667 0.00 0.00 0.00 3.24
949 954 5.236478 CGTTTCAATATGCGGTTCTATCCTT 59.764 40.000 0.00 0.00 0.00 3.36
950 955 6.430451 GTTTCAATATGCGGTTCTATCCTTG 58.570 40.000 0.00 0.00 0.00 3.61
951 956 4.641396 TCAATATGCGGTTCTATCCTTGG 58.359 43.478 0.00 0.00 0.00 3.61
952 957 4.102524 TCAATATGCGGTTCTATCCTTGGT 59.897 41.667 0.00 0.00 0.00 3.67
953 958 2.332063 ATGCGGTTCTATCCTTGGTG 57.668 50.000 0.00 0.00 0.00 4.17
954 959 0.251916 TGCGGTTCTATCCTTGGTGG 59.748 55.000 0.00 0.00 37.10 4.61
955 960 0.463833 GCGGTTCTATCCTTGGTGGG 60.464 60.000 0.00 0.00 36.20 4.61
956 961 1.200519 CGGTTCTATCCTTGGTGGGA 58.799 55.000 0.00 0.00 39.95 4.37
957 962 1.134491 CGGTTCTATCCTTGGTGGGAC 60.134 57.143 0.00 0.00 38.30 4.46
958 963 1.212195 GGTTCTATCCTTGGTGGGACC 59.788 57.143 0.00 0.00 38.30 4.46
959 964 2.197465 GTTCTATCCTTGGTGGGACCT 58.803 52.381 0.00 0.00 39.58 3.85
960 965 2.576648 GTTCTATCCTTGGTGGGACCTT 59.423 50.000 0.00 0.00 39.58 3.50
961 966 2.478292 TCTATCCTTGGTGGGACCTTC 58.522 52.381 0.00 0.00 39.58 3.46
962 967 1.139058 CTATCCTTGGTGGGACCTTCG 59.861 57.143 0.00 0.00 39.58 3.79
963 968 0.546747 ATCCTTGGTGGGACCTTCGA 60.547 55.000 0.00 0.00 39.58 3.71
964 969 1.192146 TCCTTGGTGGGACCTTCGAG 61.192 60.000 0.00 0.00 39.58 4.04
965 970 1.481056 CCTTGGTGGGACCTTCGAGT 61.481 60.000 0.00 0.00 39.58 4.18
966 971 0.037232 CTTGGTGGGACCTTCGAGTC 60.037 60.000 0.00 0.00 39.58 3.36
967 972 0.471211 TTGGTGGGACCTTCGAGTCT 60.471 55.000 4.97 0.00 39.58 3.24
968 973 0.898789 TGGTGGGACCTTCGAGTCTC 60.899 60.000 4.97 1.58 39.58 3.36
969 974 0.612453 GGTGGGACCTTCGAGTCTCT 60.612 60.000 6.28 0.00 38.15 3.10
970 975 1.258676 GTGGGACCTTCGAGTCTCTT 58.741 55.000 6.28 0.00 38.15 2.85
971 976 1.619332 GTGGGACCTTCGAGTCTCTTT 59.381 52.381 6.28 0.00 38.15 2.52
972 977 2.824341 GTGGGACCTTCGAGTCTCTTTA 59.176 50.000 6.28 0.00 38.15 1.85
973 978 3.090037 TGGGACCTTCGAGTCTCTTTAG 58.910 50.000 6.28 0.00 38.15 1.85
974 979 2.427812 GGGACCTTCGAGTCTCTTTAGG 59.572 54.545 4.97 9.15 34.20 2.69
975 980 3.354467 GGACCTTCGAGTCTCTTTAGGA 58.646 50.000 14.98 0.00 36.95 2.94
976 981 3.955551 GGACCTTCGAGTCTCTTTAGGAT 59.044 47.826 14.98 3.97 36.95 3.24
977 982 5.131784 GGACCTTCGAGTCTCTTTAGGATA 58.868 45.833 14.98 0.00 36.95 2.59
978 983 5.239963 GGACCTTCGAGTCTCTTTAGGATAG 59.760 48.000 14.98 0.69 36.95 2.08
979 984 5.757988 ACCTTCGAGTCTCTTTAGGATAGT 58.242 41.667 14.98 0.00 0.00 2.12
980 985 6.897986 ACCTTCGAGTCTCTTTAGGATAGTA 58.102 40.000 14.98 0.00 0.00 1.82
981 986 7.519927 ACCTTCGAGTCTCTTTAGGATAGTAT 58.480 38.462 14.98 0.00 0.00 2.12
982 987 7.662669 ACCTTCGAGTCTCTTTAGGATAGTATC 59.337 40.741 14.98 1.11 0.00 2.24
983 988 7.148540 CCTTCGAGTCTCTTTAGGATAGTATCG 60.149 44.444 4.06 0.00 0.00 2.92
984 989 5.638657 TCGAGTCTCTTTAGGATAGTATCGC 59.361 44.000 4.06 0.00 0.00 4.58
985 990 5.408909 CGAGTCTCTTTAGGATAGTATCGCA 59.591 44.000 4.06 0.00 0.00 5.10
986 991 6.092944 CGAGTCTCTTTAGGATAGTATCGCAT 59.907 42.308 4.06 0.00 0.00 4.73
987 992 7.278203 CGAGTCTCTTTAGGATAGTATCGCATA 59.722 40.741 4.06 0.00 0.00 3.14
988 993 9.116067 GAGTCTCTTTAGGATAGTATCGCATAT 57.884 37.037 4.06 0.00 0.00 1.78
989 994 9.469097 AGTCTCTTTAGGATAGTATCGCATATT 57.531 33.333 4.06 0.00 0.00 1.28
990 995 9.509855 GTCTCTTTAGGATAGTATCGCATATTG 57.490 37.037 4.06 0.00 0.00 1.90
991 996 8.687242 TCTCTTTAGGATAGTATCGCATATTGG 58.313 37.037 4.06 0.00 0.00 3.16
992 997 7.782049 TCTTTAGGATAGTATCGCATATTGGG 58.218 38.462 4.06 0.00 0.00 4.12
993 998 4.408182 AGGATAGTATCGCATATTGGGC 57.592 45.455 4.06 0.00 0.00 5.36
1011 1016 2.056906 GCGTGATAATGGCCTCCCCT 62.057 60.000 3.32 0.00 0.00 4.79
1013 1018 1.133792 CGTGATAATGGCCTCCCCTTT 60.134 52.381 3.32 0.00 35.36 3.11
1210 1215 4.635765 CCGATAAGAATTTCTCACAGGCAA 59.364 41.667 0.00 0.00 0.00 4.52
1377 1382 2.636647 TGGCAGTTCTGATGTGTTCA 57.363 45.000 3.84 0.00 0.00 3.18
1434 1439 3.758425 TGATCATATGCCCATCTGGTTG 58.242 45.455 0.00 0.00 36.04 3.77
1440 1445 1.607467 GCCCATCTGGTTGCAGGTT 60.607 57.895 0.00 0.00 36.04 3.50
1468 1473 2.441001 CTCCCAGATCCCTACTGCAAAT 59.559 50.000 0.00 0.00 34.47 2.32
1504 1509 1.140134 ACTCCTTAAAGGGGCTGGCA 61.140 55.000 2.88 0.00 40.45 4.92
1509 1514 3.103742 CCTTAAAGGGGCTGGCAAAATA 58.896 45.455 2.88 0.00 0.00 1.40
1519 1524 3.385755 GGCTGGCAAAATATTGGAGATGT 59.614 43.478 0.00 0.00 37.02 3.06
1602 1607 5.008712 GCAGCCTCTTACAAAGTTTGTTAGT 59.991 40.000 25.35 7.97 42.22 2.24
1655 1661 0.323302 TGCGGTATGAGAAGTTGGCA 59.677 50.000 0.00 0.00 0.00 4.92
1699 1706 2.171448 GGATAGGACATGAGCACAAGGT 59.829 50.000 0.00 0.00 0.00 3.50
1755 1762 5.197451 TCAAGTTTGGTGATTGGTTGTACT 58.803 37.500 0.00 0.00 0.00 2.73
1798 1805 1.321474 CCTGAGCAAAACTCCAGCAA 58.679 50.000 0.00 0.00 45.61 3.91
2013 2021 5.842907 ACAAACCAAAAAGTAAGGATGAGC 58.157 37.500 0.00 0.00 0.00 4.26
2112 2120 3.259876 ACGTGTCAAGCTTACCAAGGATA 59.740 43.478 0.00 0.00 0.00 2.59
2135 2143 1.657751 CGACCACTCAGAGATCGGCA 61.658 60.000 3.79 0.00 0.00 5.69
2144 2152 0.980231 AGAGATCGGCAGCTTCCCTT 60.980 55.000 0.00 0.00 0.00 3.95
2163 2171 2.203596 AGGAAGACCACCGGACGT 60.204 61.111 9.46 2.33 38.94 4.34
2165 2173 0.964358 AGGAAGACCACCGGACGTAG 60.964 60.000 9.46 0.00 38.94 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.057627 TGACCGATAAAGATCTTCGTAGAC 57.942 41.667 8.78 0.00 34.32 2.59
336 339 8.271458 TGTCACAACATAACTGGGTGATTATAT 58.729 33.333 0.00 0.00 40.54 0.86
422 425 8.668353 GCTTTCTTCATGACTTATACATGTTCA 58.332 33.333 2.30 0.84 43.56 3.18
491 494 5.563592 AGAATGATGTGATTGACTTGACCA 58.436 37.500 0.00 0.00 0.00 4.02
765 769 0.537188 AACGACATCCACCCTGCTAG 59.463 55.000 0.00 0.00 0.00 3.42
819 824 5.590259 ACAACATCATCTTACATAAGGGCAC 59.410 40.000 0.00 0.00 34.14 5.01
820 825 5.754782 ACAACATCATCTTACATAAGGGCA 58.245 37.500 0.00 0.00 34.14 5.36
821 826 7.986085 ATACAACATCATCTTACATAAGGGC 57.014 36.000 0.00 0.00 34.14 5.19
822 827 8.712363 CGAATACAACATCATCTTACATAAGGG 58.288 37.037 0.00 0.00 34.14 3.95
823 828 9.261180 ACGAATACAACATCATCTTACATAAGG 57.739 33.333 0.00 0.00 34.14 2.69
825 830 9.594478 ACACGAATACAACATCATCTTACATAA 57.406 29.630 0.00 0.00 0.00 1.90
826 831 9.030301 CACACGAATACAACATCATCTTACATA 57.970 33.333 0.00 0.00 0.00 2.29
827 832 7.465916 GCACACGAATACAACATCATCTTACAT 60.466 37.037 0.00 0.00 0.00 2.29
828 833 6.183360 GCACACGAATACAACATCATCTTACA 60.183 38.462 0.00 0.00 0.00 2.41
829 834 6.185399 GCACACGAATACAACATCATCTTAC 58.815 40.000 0.00 0.00 0.00 2.34
830 835 5.293324 GGCACACGAATACAACATCATCTTA 59.707 40.000 0.00 0.00 0.00 2.10
831 836 4.094887 GGCACACGAATACAACATCATCTT 59.905 41.667 0.00 0.00 0.00 2.40
832 837 3.623060 GGCACACGAATACAACATCATCT 59.377 43.478 0.00 0.00 0.00 2.90
833 838 3.373748 TGGCACACGAATACAACATCATC 59.626 43.478 0.00 0.00 0.00 2.92
834 839 3.342719 TGGCACACGAATACAACATCAT 58.657 40.909 0.00 0.00 0.00 2.45
835 840 2.772287 TGGCACACGAATACAACATCA 58.228 42.857 0.00 0.00 0.00 3.07
853 858 6.372659 GGATACATACAAGAGGCATACAATGG 59.627 42.308 0.00 0.00 0.00 3.16
854 859 6.372659 GGGATACATACAAGAGGCATACAATG 59.627 42.308 0.00 0.00 39.74 2.82
855 860 6.476378 GGGATACATACAAGAGGCATACAAT 58.524 40.000 0.00 0.00 39.74 2.71
856 861 5.221843 GGGGATACATACAAGAGGCATACAA 60.222 44.000 0.00 0.00 39.74 2.41
857 862 4.286032 GGGGATACATACAAGAGGCATACA 59.714 45.833 0.00 0.00 39.74 2.29
858 863 4.286032 TGGGGATACATACAAGAGGCATAC 59.714 45.833 0.00 0.00 39.74 2.39
859 864 4.498493 TGGGGATACATACAAGAGGCATA 58.502 43.478 0.00 0.00 39.74 3.14
860 865 3.326521 TGGGGATACATACAAGAGGCAT 58.673 45.455 0.00 0.00 39.74 4.40
861 866 2.770447 TGGGGATACATACAAGAGGCA 58.230 47.619 0.00 0.00 39.74 4.75
862 867 3.584848 AGATGGGGATACATACAAGAGGC 59.415 47.826 0.00 0.00 39.74 4.70
863 868 7.502060 AATAGATGGGGATACATACAAGAGG 57.498 40.000 0.00 0.00 39.74 3.69
865 870 9.560860 ACATAATAGATGGGGATACATACAAGA 57.439 33.333 0.00 0.00 39.74 3.02
872 877 9.958180 CAACATTACATAATAGATGGGGATACA 57.042 33.333 0.00 0.00 39.74 2.29
875 880 9.690913 CATCAACATTACATAATAGATGGGGAT 57.309 33.333 0.00 0.00 31.82 3.85
876 881 8.668653 ACATCAACATTACATAATAGATGGGGA 58.331 33.333 16.78 0.00 35.39 4.81
877 882 8.868522 ACATCAACATTACATAATAGATGGGG 57.131 34.615 16.78 4.78 35.39 4.96
889 894 9.283768 GGTGGATATCATTACATCAACATTACA 57.716 33.333 4.83 0.00 28.19 2.41
890 895 9.507329 AGGTGGATATCATTACATCAACATTAC 57.493 33.333 4.83 0.00 28.19 1.89
892 897 8.853126 CAAGGTGGATATCATTACATCAACATT 58.147 33.333 4.83 0.00 31.10 2.71
893 898 7.040201 GCAAGGTGGATATCATTACATCAACAT 60.040 37.037 4.83 0.00 28.19 2.71
894 899 6.262944 GCAAGGTGGATATCATTACATCAACA 59.737 38.462 4.83 0.00 28.19 3.33
895 900 6.262944 TGCAAGGTGGATATCATTACATCAAC 59.737 38.462 4.83 0.00 0.00 3.18
896 901 6.363882 TGCAAGGTGGATATCATTACATCAA 58.636 36.000 4.83 0.00 0.00 2.57
897 902 5.939447 TGCAAGGTGGATATCATTACATCA 58.061 37.500 4.83 0.00 0.00 3.07
898 903 6.882610 TTGCAAGGTGGATATCATTACATC 57.117 37.500 4.83 0.00 0.00 3.06
899 904 7.658525 TTTTGCAAGGTGGATATCATTACAT 57.341 32.000 4.83 0.00 0.00 2.29
900 905 6.405731 GCTTTTGCAAGGTGGATATCATTACA 60.406 38.462 4.83 0.00 46.58 2.41
901 906 5.979517 GCTTTTGCAAGGTGGATATCATTAC 59.020 40.000 4.83 0.54 46.58 1.89
902 907 6.147864 GCTTTTGCAAGGTGGATATCATTA 57.852 37.500 4.83 0.00 46.58 1.90
903 908 5.014808 GCTTTTGCAAGGTGGATATCATT 57.985 39.130 4.83 0.00 46.58 2.57
904 909 4.660789 GCTTTTGCAAGGTGGATATCAT 57.339 40.909 4.83 0.00 46.58 2.45
918 923 2.027926 CCGCATATTGAAACGCTTTTGC 59.972 45.455 0.00 0.00 43.23 3.68
919 924 3.241701 ACCGCATATTGAAACGCTTTTG 58.758 40.909 0.00 0.00 0.00 2.44
920 925 3.569250 ACCGCATATTGAAACGCTTTT 57.431 38.095 0.00 0.00 0.00 2.27
921 926 3.190535 AGAACCGCATATTGAAACGCTTT 59.809 39.130 0.00 0.00 0.00 3.51
922 927 2.747446 AGAACCGCATATTGAAACGCTT 59.253 40.909 0.00 0.00 0.00 4.68
923 928 2.356135 AGAACCGCATATTGAAACGCT 58.644 42.857 0.00 0.00 0.00 5.07
924 929 2.825086 AGAACCGCATATTGAAACGC 57.175 45.000 0.00 0.00 0.00 4.84
925 930 4.750098 AGGATAGAACCGCATATTGAAACG 59.250 41.667 0.00 0.00 34.73 3.60
926 931 6.430451 CAAGGATAGAACCGCATATTGAAAC 58.570 40.000 0.00 0.00 34.73 2.78
927 932 5.530915 CCAAGGATAGAACCGCATATTGAAA 59.469 40.000 0.00 0.00 34.73 2.69
928 933 5.063204 CCAAGGATAGAACCGCATATTGAA 58.937 41.667 0.00 0.00 34.73 2.69
929 934 4.102524 ACCAAGGATAGAACCGCATATTGA 59.897 41.667 0.00 0.00 34.73 2.57
930 935 4.214119 CACCAAGGATAGAACCGCATATTG 59.786 45.833 0.00 0.00 34.73 1.90
931 936 4.389374 CACCAAGGATAGAACCGCATATT 58.611 43.478 0.00 0.00 34.73 1.28
932 937 3.244561 CCACCAAGGATAGAACCGCATAT 60.245 47.826 0.00 0.00 41.22 1.78
933 938 2.104111 CCACCAAGGATAGAACCGCATA 59.896 50.000 0.00 0.00 41.22 3.14
934 939 1.134098 CCACCAAGGATAGAACCGCAT 60.134 52.381 0.00 0.00 41.22 4.73
935 940 0.251916 CCACCAAGGATAGAACCGCA 59.748 55.000 0.00 0.00 41.22 5.69
936 941 0.463833 CCCACCAAGGATAGAACCGC 60.464 60.000 0.00 0.00 41.22 5.68
937 942 1.134491 GTCCCACCAAGGATAGAACCG 60.134 57.143 0.00 0.00 41.22 4.44
938 943 1.212195 GGTCCCACCAAGGATAGAACC 59.788 57.143 0.00 0.00 41.22 3.62
939 944 2.197465 AGGTCCCACCAAGGATAGAAC 58.803 52.381 0.00 0.00 41.95 3.01
940 945 2.661176 AGGTCCCACCAAGGATAGAA 57.339 50.000 0.00 0.00 41.95 2.10
941 946 2.478292 GAAGGTCCCACCAAGGATAGA 58.522 52.381 0.00 0.00 41.95 1.98
942 947 1.139058 CGAAGGTCCCACCAAGGATAG 59.861 57.143 0.00 0.00 41.95 2.08
943 948 1.200519 CGAAGGTCCCACCAAGGATA 58.799 55.000 0.00 0.00 41.95 2.59
944 949 0.546747 TCGAAGGTCCCACCAAGGAT 60.547 55.000 0.00 0.00 41.95 3.24
945 950 1.152204 TCGAAGGTCCCACCAAGGA 60.152 57.895 0.00 0.00 41.95 3.36
946 951 1.296715 CTCGAAGGTCCCACCAAGG 59.703 63.158 0.00 0.00 41.95 3.61
947 952 0.037232 GACTCGAAGGTCCCACCAAG 60.037 60.000 0.00 0.00 41.95 3.61
948 953 0.471211 AGACTCGAAGGTCCCACCAA 60.471 55.000 1.46 0.00 41.95 3.67
949 954 0.898789 GAGACTCGAAGGTCCCACCA 60.899 60.000 1.46 0.00 41.95 4.17
950 955 0.612453 AGAGACTCGAAGGTCCCACC 60.612 60.000 1.46 0.00 38.99 4.61
951 956 1.258676 AAGAGACTCGAAGGTCCCAC 58.741 55.000 1.46 0.00 36.95 4.61
952 957 2.011122 AAAGAGACTCGAAGGTCCCA 57.989 50.000 1.46 0.00 36.95 4.37
953 958 2.427812 CCTAAAGAGACTCGAAGGTCCC 59.572 54.545 10.86 0.00 36.95 4.46
954 959 3.354467 TCCTAAAGAGACTCGAAGGTCC 58.646 50.000 15.93 0.00 36.95 4.46
955 960 5.824097 ACTATCCTAAAGAGACTCGAAGGTC 59.176 44.000 15.93 0.00 36.56 3.85
956 961 5.757988 ACTATCCTAAAGAGACTCGAAGGT 58.242 41.667 15.93 9.26 0.00 3.50
957 962 7.148540 CGATACTATCCTAAAGAGACTCGAAGG 60.149 44.444 12.22 12.22 0.00 3.46
958 963 7.622672 GCGATACTATCCTAAAGAGACTCGAAG 60.623 44.444 0.00 0.00 0.00 3.79
959 964 6.147492 GCGATACTATCCTAAAGAGACTCGAA 59.853 42.308 0.00 0.00 0.00 3.71
960 965 5.638657 GCGATACTATCCTAAAGAGACTCGA 59.361 44.000 0.00 0.00 0.00 4.04
961 966 5.408909 TGCGATACTATCCTAAAGAGACTCG 59.591 44.000 0.00 0.00 0.00 4.18
962 967 6.804770 TGCGATACTATCCTAAAGAGACTC 57.195 41.667 0.00 0.00 0.00 3.36
963 968 9.469097 AATATGCGATACTATCCTAAAGAGACT 57.531 33.333 0.00 0.00 0.00 3.24
964 969 9.509855 CAATATGCGATACTATCCTAAAGAGAC 57.490 37.037 0.00 0.00 0.00 3.36
965 970 8.687242 CCAATATGCGATACTATCCTAAAGAGA 58.313 37.037 0.00 0.00 0.00 3.10
966 971 7.923344 CCCAATATGCGATACTATCCTAAAGAG 59.077 40.741 0.00 0.00 0.00 2.85
967 972 7.632898 GCCCAATATGCGATACTATCCTAAAGA 60.633 40.741 0.00 0.00 0.00 2.52
968 973 6.480320 GCCCAATATGCGATACTATCCTAAAG 59.520 42.308 0.00 0.00 0.00 1.85
969 974 6.346096 GCCCAATATGCGATACTATCCTAAA 58.654 40.000 0.00 0.00 0.00 1.85
970 975 5.914033 GCCCAATATGCGATACTATCCTAA 58.086 41.667 0.00 0.00 0.00 2.69
971 976 5.531122 GCCCAATATGCGATACTATCCTA 57.469 43.478 0.00 0.00 0.00 2.94
972 977 4.408182 GCCCAATATGCGATACTATCCT 57.592 45.455 0.00 0.00 0.00 3.24
983 988 2.415893 GCCATTATCACGCCCAATATGC 60.416 50.000 0.00 0.00 0.00 3.14
984 989 2.164219 GGCCATTATCACGCCCAATATG 59.836 50.000 0.00 0.00 36.63 1.78
985 990 2.041620 AGGCCATTATCACGCCCAATAT 59.958 45.455 5.01 0.00 44.13 1.28
986 991 1.423541 AGGCCATTATCACGCCCAATA 59.576 47.619 5.01 0.00 44.13 1.90
987 992 0.185901 AGGCCATTATCACGCCCAAT 59.814 50.000 5.01 0.00 44.13 3.16
988 993 0.465460 GAGGCCATTATCACGCCCAA 60.465 55.000 5.01 0.00 44.13 4.12
989 994 1.148273 GAGGCCATTATCACGCCCA 59.852 57.895 5.01 0.00 44.13 5.36
990 995 1.600916 GGAGGCCATTATCACGCCC 60.601 63.158 5.01 0.00 44.13 6.13
991 996 1.600916 GGGAGGCCATTATCACGCC 60.601 63.158 5.01 0.00 43.35 5.68
992 997 1.600916 GGGGAGGCCATTATCACGC 60.601 63.158 5.01 0.00 0.00 5.34
993 998 0.474184 AAGGGGAGGCCATTATCACG 59.526 55.000 5.01 0.00 0.00 4.35
994 999 2.310538 CAAAGGGGAGGCCATTATCAC 58.689 52.381 5.01 0.00 0.00 3.06
995 1000 1.217689 CCAAAGGGGAGGCCATTATCA 59.782 52.381 5.01 0.00 40.01 2.15
996 1001 1.499007 TCCAAAGGGGAGGCCATTATC 59.501 52.381 5.01 0.00 42.15 1.75
997 1002 1.619298 TCCAAAGGGGAGGCCATTAT 58.381 50.000 5.01 0.00 42.15 1.28
998 1003 3.129131 TCCAAAGGGGAGGCCATTA 57.871 52.632 5.01 0.00 42.15 1.90
999 1004 3.952232 TCCAAAGGGGAGGCCATT 58.048 55.556 5.01 0.00 42.15 3.16
1011 1016 2.657297 GGCAGAGTTGGCATCCAAA 58.343 52.632 0.00 0.00 45.73 3.28
1210 1215 4.229582 TGCCCTCATATCCTTGTAAAAGGT 59.770 41.667 11.64 2.21 40.81 3.50
1434 1439 3.350219 TCTGGGAGTTTATGAACCTGC 57.650 47.619 0.00 0.00 36.39 4.85
1440 1445 4.901849 CAGTAGGGATCTGGGAGTTTATGA 59.098 45.833 0.00 0.00 0.00 2.15
1468 1473 2.029623 GAGTCGCTCCACAATACCCTA 58.970 52.381 0.00 0.00 0.00 3.53
1504 1509 7.090173 CCGTTCAAACACATCTCCAATATTTT 58.910 34.615 0.00 0.00 0.00 1.82
1509 1514 2.228822 GCCGTTCAAACACATCTCCAAT 59.771 45.455 0.00 0.00 0.00 3.16
1519 1524 0.875728 CGGGTATTGCCGTTCAAACA 59.124 50.000 0.00 0.00 38.34 2.83
1548 1553 5.182169 TGTGGTTTACCCTAACCCTAATG 57.818 43.478 0.00 0.00 45.69 1.90
1570 1575 3.423539 TGTAAGAGGCTGCTTGATGTT 57.576 42.857 0.00 0.00 0.00 2.71
1602 1607 1.664649 CTCCTGCGCTCGAACAACA 60.665 57.895 9.73 0.00 0.00 3.33
1655 1661 2.230266 ACCACAGAAACTGCAAAAACGT 59.770 40.909 0.00 0.00 34.37 3.99
1699 1706 0.324614 ATGAACACCAGATCCGCACA 59.675 50.000 0.00 0.00 0.00 4.57
1798 1805 0.974383 CGGGCGGGATTTATCTACCT 59.026 55.000 0.00 0.00 0.00 3.08
2112 2120 1.202348 CGATCTCTGAGTGGTCGCATT 60.202 52.381 4.16 0.00 0.00 3.56
2144 2152 2.273179 CGTCCGGTGGTCTTCCTCA 61.273 63.158 0.00 0.00 34.23 3.86
2429 2453 1.079503 CCTAGTTTCGCACAGGAAGC 58.920 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.