Multiple sequence alignment - TraesCS2B01G148400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G148400 chr2B 100.000 2366 0 0 1 2366 114432084 114429719 0.000000e+00 4370
1 TraesCS2B01G148400 chr2B 96.393 804 28 1 1 804 210817793 210818595 0.000000e+00 1323
2 TraesCS2B01G148400 chr2B 94.945 811 36 3 1 809 572181731 572180924 0.000000e+00 1266
3 TraesCS2B01G148400 chr2B 95.860 628 25 1 1 627 70841756 70842383 0.000000e+00 1014
4 TraesCS2B01G148400 chr2B 94.330 194 11 0 611 804 70842935 70843128 4.940000e-77 298
5 TraesCS2B01G148400 chr1B 95.432 810 36 1 1 809 582167887 582167078 0.000000e+00 1290
6 TraesCS2B01G148400 chr7A 95.432 810 33 2 1 809 102549075 102549881 0.000000e+00 1288
7 TraesCS2B01G148400 chr7A 90.132 831 58 10 1 830 8422735 8423542 0.000000e+00 1059
8 TraesCS2B01G148400 chr3B 95.185 810 34 3 1 809 765302206 765303011 0.000000e+00 1275
9 TraesCS2B01G148400 chr4A 95.062 810 39 1 1 809 705590195 705591004 0.000000e+00 1273
10 TraesCS2B01G148400 chr7B 94.821 811 40 2 1 809 697169897 697169087 0.000000e+00 1264
11 TraesCS2B01G148400 chr2D 87.834 1085 74 39 812 1867 74986722 74985667 0.000000e+00 1219
12 TraesCS2B01G148400 chr2D 77.536 414 38 25 1337 1747 74985487 74985126 5.160000e-47 198
13 TraesCS2B01G148400 chr2A 87.150 1035 74 32 812 1826 74562305 74561310 0.000000e+00 1120
14 TraesCS2B01G148400 chr2A 79.443 287 44 9 1906 2182 74561305 74561024 3.100000e-44 189
15 TraesCS2B01G148400 chr2A 90.977 133 6 3 2221 2350 74554632 74554503 8.690000e-40 174
16 TraesCS2B01G148400 chr2A 84.211 133 19 2 1623 1755 74553927 74553797 6.860000e-26 128
17 TraesCS2B01G148400 chr2A 88.393 112 6 2 1328 1439 74554277 74554173 6.860000e-26 128
18 TraesCS2B01G148400 chr3A 91.224 809 50 5 1 809 53892878 53892091 0.000000e+00 1081
19 TraesCS2B01G148400 chr4D 79.585 578 89 17 855 1431 40824318 40824867 1.030000e-103 387
20 TraesCS2B01G148400 chr4D 80.679 383 45 20 1000 1360 11000094 10999719 1.080000e-68 270
21 TraesCS2B01G148400 chr4B 77.989 527 88 16 905 1431 59866241 59866739 2.950000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G148400 chr2B 114429719 114432084 2365 True 4370.0 4370 100.0000 1 2366 1 chr2B.!!$R1 2365
1 TraesCS2B01G148400 chr2B 210817793 210818595 802 False 1323.0 1323 96.3930 1 804 1 chr2B.!!$F1 803
2 TraesCS2B01G148400 chr2B 572180924 572181731 807 True 1266.0 1266 94.9450 1 809 1 chr2B.!!$R2 808
3 TraesCS2B01G148400 chr2B 70841756 70843128 1372 False 656.0 1014 95.0950 1 804 2 chr2B.!!$F2 803
4 TraesCS2B01G148400 chr1B 582167078 582167887 809 True 1290.0 1290 95.4320 1 809 1 chr1B.!!$R1 808
5 TraesCS2B01G148400 chr7A 102549075 102549881 806 False 1288.0 1288 95.4320 1 809 1 chr7A.!!$F2 808
6 TraesCS2B01G148400 chr7A 8422735 8423542 807 False 1059.0 1059 90.1320 1 830 1 chr7A.!!$F1 829
7 TraesCS2B01G148400 chr3B 765302206 765303011 805 False 1275.0 1275 95.1850 1 809 1 chr3B.!!$F1 808
8 TraesCS2B01G148400 chr4A 705590195 705591004 809 False 1273.0 1273 95.0620 1 809 1 chr4A.!!$F1 808
9 TraesCS2B01G148400 chr7B 697169087 697169897 810 True 1264.0 1264 94.8210 1 809 1 chr7B.!!$R1 808
10 TraesCS2B01G148400 chr2D 74985126 74986722 1596 True 708.5 1219 82.6850 812 1867 2 chr2D.!!$R1 1055
11 TraesCS2B01G148400 chr2A 74561024 74562305 1281 True 654.5 1120 83.2965 812 2182 2 chr2A.!!$R2 1370
12 TraesCS2B01G148400 chr3A 53892091 53892878 787 True 1081.0 1081 91.2240 1 809 1 chr3A.!!$R1 808
13 TraesCS2B01G148400 chr4D 40824318 40824867 549 False 387.0 387 79.5850 855 1431 1 chr4D.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1514 0.037326 TCGCGCAATCACTTCCTTCT 60.037 50.0 8.75 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 3195 0.039165 CTCCGCCCAAAAGAAGTTGC 60.039 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 269 6.899393 TTTCTTGCTTCCAGACATTACAAT 57.101 33.333 0.00 0.00 0.00 2.71
284 285 8.116651 ACATTACAATACTTGTGGTGCAATAA 57.883 30.769 2.85 0.00 45.03 1.40
357 360 6.732531 TTTTATGCAGTCAAGACATCTCTG 57.267 37.500 2.72 0.00 0.00 3.35
423 426 7.016661 CCATAGAGGTATCTTCCCACTATTGTT 59.983 40.741 0.00 0.00 36.96 2.83
430 433 4.062293 TCTTCCCACTATTGTTGTTGACG 58.938 43.478 0.00 0.00 0.00 4.35
636 1208 9.911788 AATACAGGAGACATGTTGATTAAGAAT 57.088 29.630 0.00 0.00 32.02 2.40
785 1359 5.539582 TGTGTTAATCCAAATAGACGTGC 57.460 39.130 0.00 0.00 0.00 5.34
809 1383 2.937591 GCACGTGCACACTTACTAGTA 58.062 47.619 34.52 0.00 41.59 1.82
810 1384 3.508762 GCACGTGCACACTTACTAGTAT 58.491 45.455 34.52 0.00 41.59 2.12
833 1407 5.123227 TGTCCAAAAAGTCATTCGTTCTCT 58.877 37.500 0.00 0.00 0.00 3.10
875 1451 1.701031 TTTGGCACCGAGACCTCCAA 61.701 55.000 0.00 0.00 35.25 3.53
881 1457 2.614057 GCACCGAGACCTCCAATAAATG 59.386 50.000 0.00 0.00 0.00 2.32
921 1497 1.007849 CCAAACCAAACCGCCTTCG 60.008 57.895 0.00 0.00 0.00 3.79
938 1514 0.037326 TCGCGCAATCACTTCCTTCT 60.037 50.000 8.75 0.00 0.00 2.85
940 1516 1.590238 CGCGCAATCACTTCCTTCTAG 59.410 52.381 8.75 0.00 0.00 2.43
966 1556 4.902258 TCCACCGTCCCCAACCCA 62.902 66.667 0.00 0.00 0.00 4.51
971 1561 2.513895 CGTCCCCAACCCACAACT 59.486 61.111 0.00 0.00 0.00 3.16
975 1565 2.117423 CCCAACCCACAACTCCCC 59.883 66.667 0.00 0.00 0.00 4.81
977 1567 1.228552 CCAACCCACAACTCCCCAG 60.229 63.158 0.00 0.00 0.00 4.45
978 1568 1.228552 CAACCCACAACTCCCCAGG 60.229 63.158 0.00 0.00 0.00 4.45
981 1571 4.366684 CCACAACTCCCCAGGCCC 62.367 72.222 0.00 0.00 0.00 5.80
984 1574 3.589542 CAACTCCCCAGGCCCCAA 61.590 66.667 0.00 0.00 0.00 4.12
985 1575 3.590574 AACTCCCCAGGCCCCAAC 61.591 66.667 0.00 0.00 0.00 3.77
986 1576 4.938756 ACTCCCCAGGCCCCAACA 62.939 66.667 0.00 0.00 0.00 3.33
990 1580 4.684134 CCCAGGCCCCAACACCAG 62.684 72.222 0.00 0.00 0.00 4.00
991 1581 3.902112 CCAGGCCCCAACACCAGT 61.902 66.667 0.00 0.00 0.00 4.00
992 1582 2.282462 CAGGCCCCAACACCAGTC 60.282 66.667 0.00 0.00 0.00 3.51
998 1588 0.405585 CCCCAACACCAGTCCATCTT 59.594 55.000 0.00 0.00 0.00 2.40
1010 1600 2.514592 CATCTTCATGGCGCGGGT 60.515 61.111 8.83 0.00 0.00 5.28
1033 1626 3.024356 TCCTCCTCCTCGCCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
1121 1717 4.157120 CCCCATCCCGGACGTGAC 62.157 72.222 0.73 0.00 36.56 3.67
1137 1733 4.673298 ACGGACGCGCACATCCAA 62.673 61.111 19.15 0.00 34.35 3.53
1140 1736 2.032634 GGACGCGCACATCCAAGAA 61.033 57.895 5.73 0.00 34.87 2.52
1143 1739 1.291877 ACGCGCACATCCAAGAACTC 61.292 55.000 5.73 0.00 0.00 3.01
1305 1901 4.189188 CCCTACGTCGCCGAGGTG 62.189 72.222 21.41 11.47 37.88 4.00
1316 1912 1.651240 GCCGAGGTGTACGAGCAGTA 61.651 60.000 0.00 0.00 0.00 2.74
1317 1913 1.022735 CCGAGGTGTACGAGCAGTAT 58.977 55.000 0.00 0.00 37.69 2.12
1429 2025 1.134367 CGTCCGCTCTGGTTAATCTCA 59.866 52.381 0.00 0.00 39.52 3.27
1432 2028 3.068873 GTCCGCTCTGGTTAATCTCATCT 59.931 47.826 0.00 0.00 39.52 2.90
1443 2039 0.755686 ATCTCATCTGCCCGTCCTTC 59.244 55.000 0.00 0.00 0.00 3.46
1454 2052 2.599659 CCCGTCCTTCGTAGTTTGTAC 58.400 52.381 0.00 0.00 37.94 2.90
1476 2074 3.652057 ACCACTAGTGCTGCCAATAAT 57.348 42.857 17.86 0.00 0.00 1.28
1477 2075 4.771114 ACCACTAGTGCTGCCAATAATA 57.229 40.909 17.86 0.00 0.00 0.98
1478 2076 5.110814 ACCACTAGTGCTGCCAATAATAA 57.889 39.130 17.86 0.00 0.00 1.40
1497 2095 3.876589 ATGAGTCGCGCGGTTTGGT 62.877 57.895 31.69 9.35 0.00 3.67
1501 2099 4.728102 TCGCGCGGTTTGGTCGAT 62.728 61.111 31.69 0.00 0.00 3.59
1503 2101 4.204891 GCGCGGTTTGGTCGATCG 62.205 66.667 9.36 9.36 0.00 3.69
1506 2104 1.735198 GCGGTTTGGTCGATCGTCA 60.735 57.895 15.94 12.00 0.00 4.35
1507 2105 1.952266 GCGGTTTGGTCGATCGTCAC 61.952 60.000 15.94 6.71 0.00 3.67
1508 2106 1.670971 CGGTTTGGTCGATCGTCACG 61.671 60.000 15.94 10.69 0.00 4.35
1509 2107 1.414897 GTTTGGTCGATCGTCACGC 59.585 57.895 15.94 6.71 0.00 5.34
1510 2108 2.084101 TTTGGTCGATCGTCACGCG 61.084 57.895 15.94 3.53 43.01 6.01
1539 2137 7.521423 GCAGTTCATCATCCTGACTACTACTAG 60.521 44.444 0.00 0.00 0.00 2.57
1593 2193 7.897575 AAATTGTGAGTACTCTGAGATTGTC 57.102 36.000 23.01 3.27 0.00 3.18
1620 2220 1.134007 CCTGGCTGTCATCCATTGCTA 60.134 52.381 0.00 0.00 32.37 3.49
1628 2228 4.271661 TGTCATCCATTGCTAATGCTTGA 58.728 39.130 4.04 5.95 40.48 3.02
1678 2278 1.082496 GCTCACGTGCACTGCTTTC 60.082 57.895 16.19 0.00 0.00 2.62
1720 2320 3.924114 TCTGTGAAGTTTCTGGAACCA 57.076 42.857 0.00 0.00 39.13 3.67
1725 2325 6.831353 TCTGTGAAGTTTCTGGAACCAAATAA 59.169 34.615 0.00 0.00 39.13 1.40
1768 2378 6.958091 GAGATTTGCTCTGCTCTGGAAGCT 62.958 50.000 0.00 0.00 43.01 3.74
1791 2401 7.798052 AGCTTTGCGTGCTTTATTTTATTTTTG 59.202 29.630 0.00 0.00 37.52 2.44
1826 2440 2.862541 TGTGTAAAGTCATGCAAGCCT 58.137 42.857 0.00 0.00 0.00 4.58
1827 2441 2.553602 TGTGTAAAGTCATGCAAGCCTG 59.446 45.455 0.00 0.00 0.00 4.85
1838 2452 2.749044 AAGCCTGCGATGCCACTG 60.749 61.111 0.00 0.00 0.00 3.66
1854 2468 3.188460 GCCACTGCAAAGATTAGTTTCGA 59.812 43.478 0.00 0.00 37.47 3.71
1855 2469 4.142600 GCCACTGCAAAGATTAGTTTCGAT 60.143 41.667 0.00 0.00 37.47 3.59
1856 2470 5.563842 CCACTGCAAAGATTAGTTTCGATC 58.436 41.667 0.00 0.00 0.00 3.69
1857 2471 5.251081 CACTGCAAAGATTAGTTTCGATCG 58.749 41.667 9.36 9.36 0.00 3.69
1858 2472 4.929808 ACTGCAAAGATTAGTTTCGATCGT 59.070 37.500 15.94 0.00 0.00 3.73
1859 2473 5.163953 ACTGCAAAGATTAGTTTCGATCGTG 60.164 40.000 15.94 2.25 0.00 4.35
1860 2474 4.688879 TGCAAAGATTAGTTTCGATCGTGT 59.311 37.500 15.94 0.89 0.00 4.49
1861 2475 5.865013 TGCAAAGATTAGTTTCGATCGTGTA 59.135 36.000 15.94 0.00 0.00 2.90
1862 2476 6.034577 TGCAAAGATTAGTTTCGATCGTGTAG 59.965 38.462 15.94 0.00 0.00 2.74
1863 2477 6.034683 GCAAAGATTAGTTTCGATCGTGTAGT 59.965 38.462 15.94 7.16 0.00 2.73
1864 2478 7.411588 GCAAAGATTAGTTTCGATCGTGTAGTT 60.412 37.037 15.94 0.29 0.00 2.24
1865 2479 7.737525 AAGATTAGTTTCGATCGTGTAGTTC 57.262 36.000 15.94 5.85 0.00 3.01
1866 2480 7.086230 AGATTAGTTTCGATCGTGTAGTTCT 57.914 36.000 15.94 7.95 0.00 3.01
1867 2481 7.536855 AGATTAGTTTCGATCGTGTAGTTCTT 58.463 34.615 15.94 0.00 0.00 2.52
1868 2482 7.697291 AGATTAGTTTCGATCGTGTAGTTCTTC 59.303 37.037 15.94 3.92 0.00 2.87
1869 2483 4.483311 AGTTTCGATCGTGTAGTTCTTCC 58.517 43.478 15.94 0.00 0.00 3.46
1870 2484 2.819422 TCGATCGTGTAGTTCTTCCG 57.181 50.000 15.94 0.00 0.00 4.30
1871 2485 2.349590 TCGATCGTGTAGTTCTTCCGA 58.650 47.619 15.94 0.00 0.00 4.55
1872 2486 2.350804 TCGATCGTGTAGTTCTTCCGAG 59.649 50.000 15.94 0.00 0.00 4.63
1873 2487 2.452105 GATCGTGTAGTTCTTCCGAGC 58.548 52.381 0.00 0.00 0.00 5.03
1874 2488 1.241165 TCGTGTAGTTCTTCCGAGCA 58.759 50.000 0.00 0.00 0.00 4.26
1875 2489 1.199327 TCGTGTAGTTCTTCCGAGCAG 59.801 52.381 0.00 0.00 0.00 4.24
1876 2490 1.199327 CGTGTAGTTCTTCCGAGCAGA 59.801 52.381 0.00 0.00 0.00 4.26
1877 2491 2.597520 GTGTAGTTCTTCCGAGCAGAC 58.402 52.381 0.00 0.00 0.00 3.51
1878 2492 2.030185 GTGTAGTTCTTCCGAGCAGACA 60.030 50.000 0.00 0.00 0.00 3.41
1879 2493 2.229062 TGTAGTTCTTCCGAGCAGACAG 59.771 50.000 0.00 0.00 0.00 3.51
1880 2494 1.621992 AGTTCTTCCGAGCAGACAGA 58.378 50.000 0.00 0.00 0.00 3.41
1881 2495 2.175202 AGTTCTTCCGAGCAGACAGAT 58.825 47.619 0.00 0.00 0.00 2.90
1882 2496 3.357203 AGTTCTTCCGAGCAGACAGATA 58.643 45.455 0.00 0.00 0.00 1.98
1883 2497 3.380004 AGTTCTTCCGAGCAGACAGATAG 59.620 47.826 0.00 0.00 0.00 2.08
1884 2498 3.006112 TCTTCCGAGCAGACAGATAGT 57.994 47.619 0.00 0.00 0.00 2.12
1885 2499 4.152284 TCTTCCGAGCAGACAGATAGTA 57.848 45.455 0.00 0.00 0.00 1.82
1886 2500 4.720046 TCTTCCGAGCAGACAGATAGTAT 58.280 43.478 0.00 0.00 0.00 2.12
1887 2501 4.757657 TCTTCCGAGCAGACAGATAGTATC 59.242 45.833 1.55 1.55 0.00 2.24
1888 2502 3.067833 TCCGAGCAGACAGATAGTATCG 58.932 50.000 4.48 3.01 0.00 2.92
1889 2503 3.067833 CCGAGCAGACAGATAGTATCGA 58.932 50.000 4.48 0.00 0.00 3.59
1890 2504 3.687212 CCGAGCAGACAGATAGTATCGAT 59.313 47.826 2.16 2.16 0.00 3.59
1891 2505 4.201773 CCGAGCAGACAGATAGTATCGATC 60.202 50.000 0.00 6.55 0.00 3.69
1892 2506 4.629634 CGAGCAGACAGATAGTATCGATCT 59.370 45.833 0.00 11.43 33.82 2.75
1893 2507 5.121611 CGAGCAGACAGATAGTATCGATCTT 59.878 44.000 0.00 0.00 31.05 2.40
1894 2508 6.494893 AGCAGACAGATAGTATCGATCTTC 57.505 41.667 0.00 10.55 31.05 2.87
1895 2509 6.000840 AGCAGACAGATAGTATCGATCTTCA 58.999 40.000 0.00 0.00 31.05 3.02
1896 2510 6.488344 AGCAGACAGATAGTATCGATCTTCAA 59.512 38.462 0.00 0.00 31.05 2.69
1897 2511 6.580791 GCAGACAGATAGTATCGATCTTCAAC 59.419 42.308 0.00 0.00 31.05 3.18
1898 2512 7.643579 CAGACAGATAGTATCGATCTTCAACA 58.356 38.462 0.00 0.00 31.05 3.33
1899 2513 7.589587 CAGACAGATAGTATCGATCTTCAACAC 59.410 40.741 0.00 0.00 31.05 3.32
1900 2514 7.283354 AGACAGATAGTATCGATCTTCAACACA 59.717 37.037 0.00 0.00 31.05 3.72
1901 2515 7.946207 ACAGATAGTATCGATCTTCAACACAT 58.054 34.615 0.00 0.00 31.05 3.21
1902 2516 8.079203 ACAGATAGTATCGATCTTCAACACATC 58.921 37.037 0.00 1.93 31.05 3.06
1903 2517 7.270151 CAGATAGTATCGATCTTCAACACATCG 59.730 40.741 0.00 0.00 40.66 3.84
1904 2518 5.250235 AGTATCGATCTTCAACACATCGT 57.750 39.130 0.00 0.00 40.28 3.73
1905 2519 5.651530 AGTATCGATCTTCAACACATCGTT 58.348 37.500 0.00 0.00 40.28 3.85
1906 2520 6.100004 AGTATCGATCTTCAACACATCGTTT 58.900 36.000 0.00 0.00 40.28 3.60
1907 2521 5.862924 ATCGATCTTCAACACATCGTTTT 57.137 34.783 0.00 0.00 40.28 2.43
1908 2522 5.666969 TCGATCTTCAACACATCGTTTTT 57.333 34.783 0.00 0.00 40.28 1.94
1909 2523 5.675970 TCGATCTTCAACACATCGTTTTTC 58.324 37.500 0.00 0.00 40.28 2.29
1910 2524 5.465390 TCGATCTTCAACACATCGTTTTTCT 59.535 36.000 0.00 0.00 40.28 2.52
1911 2525 5.785599 CGATCTTCAACACATCGTTTTTCTC 59.214 40.000 0.00 0.00 34.86 2.87
1912 2526 6.346919 CGATCTTCAACACATCGTTTTTCTCT 60.347 38.462 0.00 0.00 34.86 3.10
1913 2527 6.677781 TCTTCAACACATCGTTTTTCTCTT 57.322 33.333 0.00 0.00 34.86 2.85
1914 2528 6.715464 TCTTCAACACATCGTTTTTCTCTTC 58.285 36.000 0.00 0.00 34.86 2.87
1927 2541 5.934935 TTTTCTCTTCCACGTGGATAAAC 57.065 39.130 36.52 0.00 44.98 2.01
1940 2554 4.579869 GTGGATAAACTCTGGCTTTCTCA 58.420 43.478 0.00 0.00 0.00 3.27
1957 2571 7.413877 GGCTTTCTCATAGTGTCTGAATTTCAG 60.414 40.741 18.49 18.49 45.59 3.02
1959 2573 8.908786 TTTCTCATAGTGTCTGAATTTCAGTT 57.091 30.769 22.44 11.56 44.58 3.16
2011 2625 5.048782 GCATGTCTTTGTCAATGAACTGGTA 60.049 40.000 2.90 0.00 0.00 3.25
2016 2630 0.094730 GTCAATGAACTGGTACGCGC 59.905 55.000 5.73 0.00 0.00 6.86
2019 2633 0.037697 AATGAACTGGTACGCGCTCA 60.038 50.000 5.73 0.00 0.00 4.26
2020 2634 0.037697 ATGAACTGGTACGCGCTCAA 60.038 50.000 5.73 0.00 0.00 3.02
2028 2642 1.465187 GGTACGCGCTCAATGTTTTCC 60.465 52.381 5.73 0.00 0.00 3.13
2030 2644 0.238289 ACGCGCTCAATGTTTTCCAG 59.762 50.000 5.73 0.00 0.00 3.86
2032 2646 1.725931 CGCGCTCAATGTTTTCCAGTC 60.726 52.381 5.56 0.00 0.00 3.51
2033 2647 1.401539 GCGCTCAATGTTTTCCAGTCC 60.402 52.381 0.00 0.00 0.00 3.85
2034 2648 1.135972 CGCTCAATGTTTTCCAGTCCG 60.136 52.381 0.00 0.00 0.00 4.79
2035 2649 1.401539 GCTCAATGTTTTCCAGTCCGC 60.402 52.381 0.00 0.00 0.00 5.54
2037 2651 2.489329 CTCAATGTTTTCCAGTCCGCAT 59.511 45.455 0.00 0.00 0.00 4.73
2039 2653 2.198827 ATGTTTTCCAGTCCGCATCA 57.801 45.000 0.00 0.00 0.00 3.07
2040 2654 1.234821 TGTTTTCCAGTCCGCATCAC 58.765 50.000 0.00 0.00 0.00 3.06
2041 2655 0.521735 GTTTTCCAGTCCGCATCACC 59.478 55.000 0.00 0.00 0.00 4.02
2042 2656 0.953471 TTTTCCAGTCCGCATCACCG 60.953 55.000 0.00 0.00 0.00 4.94
2043 2657 2.107041 TTTCCAGTCCGCATCACCGT 62.107 55.000 0.00 0.00 0.00 4.83
2044 2658 2.501223 TTCCAGTCCGCATCACCGTC 62.501 60.000 0.00 0.00 0.00 4.79
2045 2659 2.573869 CAGTCCGCATCACCGTCT 59.426 61.111 0.00 0.00 0.00 4.18
2046 2660 1.079819 CAGTCCGCATCACCGTCTT 60.080 57.895 0.00 0.00 0.00 3.01
2047 2661 1.078759 CAGTCCGCATCACCGTCTTC 61.079 60.000 0.00 0.00 0.00 2.87
2048 2662 1.215647 GTCCGCATCACCGTCTTCT 59.784 57.895 0.00 0.00 0.00 2.85
2050 2664 0.965866 TCCGCATCACCGTCTTCTCT 60.966 55.000 0.00 0.00 0.00 3.10
2051 2665 0.526524 CCGCATCACCGTCTTCTCTC 60.527 60.000 0.00 0.00 0.00 3.20
2052 2666 0.171231 CGCATCACCGTCTTCTCTCA 59.829 55.000 0.00 0.00 0.00 3.27
2053 2667 1.402852 CGCATCACCGTCTTCTCTCAA 60.403 52.381 0.00 0.00 0.00 3.02
2054 2668 1.996191 GCATCACCGTCTTCTCTCAAC 59.004 52.381 0.00 0.00 0.00 3.18
2058 2672 2.231478 TCACCGTCTTCTCTCAACATCC 59.769 50.000 0.00 0.00 0.00 3.51
2067 3070 2.632996 TCTCTCAACATCCCGTGAAGTT 59.367 45.455 0.00 0.00 32.91 2.66
2081 3084 1.939934 TGAAGTTTCTGGAACGCACAG 59.060 47.619 0.00 0.00 43.20 3.66
2084 3087 1.021968 GTTTCTGGAACGCACAGGTT 58.978 50.000 2.37 0.00 36.62 3.50
2085 3088 2.158871 AGTTTCTGGAACGCACAGGTTA 60.159 45.455 0.00 0.00 43.20 2.85
2086 3089 2.163818 TTCTGGAACGCACAGGTTAG 57.836 50.000 2.37 0.00 36.62 2.34
2087 3090 0.320374 TCTGGAACGCACAGGTTAGG 59.680 55.000 2.37 0.00 36.62 2.69
2088 3091 0.034896 CTGGAACGCACAGGTTAGGT 59.965 55.000 0.00 0.00 32.38 3.08
2107 3110 0.970937 TTGTGCCAAAACCCCGTGAA 60.971 50.000 0.00 0.00 0.00 3.18
2110 3113 0.178975 TGCCAAAACCCCGTGAAGAT 60.179 50.000 0.00 0.00 0.00 2.40
2129 3132 2.600470 TTTGCTTTTGGAGGCTTGTG 57.400 45.000 0.00 0.00 0.00 3.33
2131 3134 0.746063 TGCTTTTGGAGGCTTGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
2133 3136 1.269257 GCTTTTGGAGGCTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
2136 3139 2.136298 TTGGAGGCTTGTGTGACAAA 57.864 45.000 0.00 0.00 37.69 2.83
2190 3195 7.042320 GCAGCTGCAAATCTTTAGTTTTAAG 57.958 36.000 33.36 0.00 41.59 1.85
2191 3196 6.400409 GCAGCTGCAAATCTTTAGTTTTAAGC 60.400 38.462 33.36 0.00 41.59 3.09
2192 3197 6.642131 CAGCTGCAAATCTTTAGTTTTAAGCA 59.358 34.615 0.00 0.00 33.08 3.91
2193 3198 7.169645 CAGCTGCAAATCTTTAGTTTTAAGCAA 59.830 33.333 0.00 0.00 33.08 3.91
2194 3199 7.169813 AGCTGCAAATCTTTAGTTTTAAGCAAC 59.830 33.333 1.02 0.00 33.08 4.17
2195 3200 7.169813 GCTGCAAATCTTTAGTTTTAAGCAACT 59.830 33.333 0.00 0.00 40.28 3.16
2196 3201 8.940768 TGCAAATCTTTAGTTTTAAGCAACTT 57.059 26.923 0.00 0.00 38.07 2.66
2197 3202 9.030301 TGCAAATCTTTAGTTTTAAGCAACTTC 57.970 29.630 0.00 0.00 38.07 3.01
2198 3203 9.249457 GCAAATCTTTAGTTTTAAGCAACTTCT 57.751 29.630 0.00 0.00 38.07 2.85
2203 3208 9.581099 TCTTTAGTTTTAAGCAACTTCTTTTGG 57.419 29.630 0.00 0.00 38.07 3.28
2204 3209 8.710835 TTTAGTTTTAAGCAACTTCTTTTGGG 57.289 30.769 0.00 0.00 38.07 4.12
2205 3210 5.116180 AGTTTTAAGCAACTTCTTTTGGGC 58.884 37.500 0.00 0.00 32.81 5.36
2206 3211 3.363341 TTAAGCAACTTCTTTTGGGCG 57.637 42.857 0.00 0.00 0.00 6.13
2207 3212 0.389025 AAGCAACTTCTTTTGGGCGG 59.611 50.000 0.00 0.00 0.00 6.13
2208 3213 0.467290 AGCAACTTCTTTTGGGCGGA 60.467 50.000 0.00 0.00 0.00 5.54
2209 3214 0.039165 GCAACTTCTTTTGGGCGGAG 60.039 55.000 0.00 0.00 0.00 4.63
2210 3215 1.604604 CAACTTCTTTTGGGCGGAGA 58.395 50.000 0.00 0.00 0.00 3.71
2211 3216 1.953686 CAACTTCTTTTGGGCGGAGAA 59.046 47.619 0.00 0.00 0.00 2.87
2212 3217 2.558359 CAACTTCTTTTGGGCGGAGAAT 59.442 45.455 0.00 0.00 0.00 2.40
2213 3218 3.713826 ACTTCTTTTGGGCGGAGAATA 57.286 42.857 0.00 0.00 0.00 1.75
2214 3219 4.236527 ACTTCTTTTGGGCGGAGAATAT 57.763 40.909 0.00 0.00 0.00 1.28
2215 3220 4.200092 ACTTCTTTTGGGCGGAGAATATC 58.800 43.478 0.00 0.00 0.00 1.63
2216 3221 4.080299 ACTTCTTTTGGGCGGAGAATATCT 60.080 41.667 0.00 0.00 0.00 1.98
2217 3222 4.073293 TCTTTTGGGCGGAGAATATCTC 57.927 45.455 0.00 0.00 42.66 2.75
2218 3223 3.711704 TCTTTTGGGCGGAGAATATCTCT 59.288 43.478 7.27 0.00 42.95 3.10
2230 3235 5.676532 AGAATATCTCTCTACGTCGTTGG 57.323 43.478 1.78 0.00 0.00 3.77
2231 3236 4.515944 AGAATATCTCTCTACGTCGTTGGG 59.484 45.833 1.78 0.64 0.00 4.12
2232 3237 2.125773 ATCTCTCTACGTCGTTGGGT 57.874 50.000 1.78 0.00 0.00 4.51
2233 3238 2.768253 TCTCTCTACGTCGTTGGGTA 57.232 50.000 1.78 0.00 0.00 3.69
2234 3239 2.625737 TCTCTCTACGTCGTTGGGTAG 58.374 52.381 1.78 1.76 37.94 3.18
2235 3240 2.027745 TCTCTCTACGTCGTTGGGTAGT 60.028 50.000 1.78 0.00 37.84 2.73
2236 3241 3.195610 TCTCTCTACGTCGTTGGGTAGTA 59.804 47.826 1.78 0.00 37.84 1.82
2237 3242 3.935203 CTCTCTACGTCGTTGGGTAGTAA 59.065 47.826 1.78 0.00 37.84 2.24
2238 3243 4.323417 TCTCTACGTCGTTGGGTAGTAAA 58.677 43.478 1.78 0.00 37.84 2.01
2239 3244 4.154195 TCTCTACGTCGTTGGGTAGTAAAC 59.846 45.833 1.78 0.00 37.84 2.01
2240 3245 3.818210 TCTACGTCGTTGGGTAGTAAACA 59.182 43.478 1.78 0.00 37.84 2.83
2241 3246 2.742774 ACGTCGTTGGGTAGTAAACAC 58.257 47.619 0.00 0.00 0.00 3.32
2242 3247 2.362077 ACGTCGTTGGGTAGTAAACACT 59.638 45.455 0.00 0.00 30.35 3.55
2243 3248 2.727798 CGTCGTTGGGTAGTAAACACTG 59.272 50.000 0.00 0.00 30.35 3.66
2244 3249 3.721035 GTCGTTGGGTAGTAAACACTGT 58.279 45.455 0.00 0.00 30.35 3.55
2245 3250 3.737774 GTCGTTGGGTAGTAAACACTGTC 59.262 47.826 0.00 0.00 30.35 3.51
2246 3251 3.384146 TCGTTGGGTAGTAAACACTGTCA 59.616 43.478 0.00 0.00 30.35 3.58
2247 3252 3.739300 CGTTGGGTAGTAAACACTGTCAG 59.261 47.826 0.00 0.00 30.35 3.51
2248 3253 4.500205 CGTTGGGTAGTAAACACTGTCAGA 60.500 45.833 6.91 0.00 30.35 3.27
2249 3254 5.362263 GTTGGGTAGTAAACACTGTCAGAA 58.638 41.667 6.91 0.00 30.35 3.02
2250 3255 5.617528 TGGGTAGTAAACACTGTCAGAAA 57.382 39.130 6.91 0.00 30.35 2.52
2251 3256 6.182507 TGGGTAGTAAACACTGTCAGAAAT 57.817 37.500 6.91 0.00 30.35 2.17
2252 3257 5.995282 TGGGTAGTAAACACTGTCAGAAATG 59.005 40.000 6.91 0.00 30.35 2.32
2253 3258 5.995897 GGGTAGTAAACACTGTCAGAAATGT 59.004 40.000 6.91 0.00 0.00 2.71
2254 3259 6.073222 GGGTAGTAAACACTGTCAGAAATGTG 60.073 42.308 6.91 0.00 36.59 3.21
2255 3260 6.704493 GGTAGTAAACACTGTCAGAAATGTGA 59.296 38.462 6.91 0.00 34.81 3.58
2256 3261 6.851222 AGTAAACACTGTCAGAAATGTGAG 57.149 37.500 6.91 0.00 34.81 3.51
2257 3262 6.582636 AGTAAACACTGTCAGAAATGTGAGA 58.417 36.000 6.91 0.00 34.81 3.27
2258 3263 5.998454 AAACACTGTCAGAAATGTGAGAG 57.002 39.130 6.91 3.56 42.28 3.20
2259 3264 4.000331 ACACTGTCAGAAATGTGAGAGG 58.000 45.455 6.91 2.09 41.17 3.69
2260 3265 3.244353 ACACTGTCAGAAATGTGAGAGGG 60.244 47.826 6.91 5.55 44.87 4.30
2261 3266 2.975489 ACTGTCAGAAATGTGAGAGGGT 59.025 45.455 6.91 0.00 41.17 4.34
2262 3267 4.021104 CACTGTCAGAAATGTGAGAGGGTA 60.021 45.833 6.91 0.00 41.17 3.69
2263 3268 4.593206 ACTGTCAGAAATGTGAGAGGGTAA 59.407 41.667 6.91 0.00 41.17 2.85
2264 3269 5.071788 ACTGTCAGAAATGTGAGAGGGTAAA 59.928 40.000 6.91 0.00 41.17 2.01
2265 3270 5.935945 TGTCAGAAATGTGAGAGGGTAAAA 58.064 37.500 0.00 0.00 0.00 1.52
2266 3271 5.997746 TGTCAGAAATGTGAGAGGGTAAAAG 59.002 40.000 0.00 0.00 0.00 2.27
2267 3272 5.412904 GTCAGAAATGTGAGAGGGTAAAAGG 59.587 44.000 0.00 0.00 0.00 3.11
2268 3273 5.073144 TCAGAAATGTGAGAGGGTAAAAGGT 59.927 40.000 0.00 0.00 0.00 3.50
2269 3274 5.182001 CAGAAATGTGAGAGGGTAAAAGGTG 59.818 44.000 0.00 0.00 0.00 4.00
2270 3275 3.721087 ATGTGAGAGGGTAAAAGGTGG 57.279 47.619 0.00 0.00 0.00 4.61
2271 3276 2.696775 TGTGAGAGGGTAAAAGGTGGA 58.303 47.619 0.00 0.00 0.00 4.02
2272 3277 2.637872 TGTGAGAGGGTAAAAGGTGGAG 59.362 50.000 0.00 0.00 0.00 3.86
2273 3278 2.638363 GTGAGAGGGTAAAAGGTGGAGT 59.362 50.000 0.00 0.00 0.00 3.85
2274 3279 3.072622 GTGAGAGGGTAAAAGGTGGAGTT 59.927 47.826 0.00 0.00 0.00 3.01
2275 3280 3.326880 TGAGAGGGTAAAAGGTGGAGTTC 59.673 47.826 0.00 0.00 0.00 3.01
2276 3281 3.323775 AGAGGGTAAAAGGTGGAGTTCA 58.676 45.455 0.00 0.00 0.00 3.18
2277 3282 3.072622 AGAGGGTAAAAGGTGGAGTTCAC 59.927 47.826 0.00 0.00 45.34 3.18
2278 3283 3.053826 AGGGTAAAAGGTGGAGTTCACT 58.946 45.455 0.51 0.00 45.38 3.41
2279 3284 3.462205 AGGGTAAAAGGTGGAGTTCACTT 59.538 43.478 0.51 0.00 45.38 3.16
2280 3285 3.819337 GGGTAAAAGGTGGAGTTCACTTC 59.181 47.826 0.51 0.00 45.38 3.01
2281 3286 4.445879 GGGTAAAAGGTGGAGTTCACTTCT 60.446 45.833 0.51 0.00 45.38 2.85
2282 3287 5.131067 GGTAAAAGGTGGAGTTCACTTCTT 58.869 41.667 0.51 0.00 45.38 2.52
2283 3288 5.593095 GGTAAAAGGTGGAGTTCACTTCTTT 59.407 40.000 0.51 0.89 45.38 2.52
2284 3289 6.096423 GGTAAAAGGTGGAGTTCACTTCTTTT 59.904 38.462 17.49 17.49 43.52 2.27
2285 3290 6.605471 AAAAGGTGGAGTTCACTTCTTTTT 57.395 33.333 10.95 6.71 41.05 1.94
2308 3313 3.038417 GCAACTCTGCTCGCACGT 61.038 61.111 0.00 0.00 45.74 4.49
2309 3314 2.849007 CAACTCTGCTCGCACGTG 59.151 61.111 12.28 12.28 0.00 4.49
2310 3315 2.356313 AACTCTGCTCGCACGTGG 60.356 61.111 18.88 7.71 0.00 4.94
2311 3316 3.151958 AACTCTGCTCGCACGTGGT 62.152 57.895 18.88 0.34 0.00 4.16
2312 3317 2.807045 CTCTGCTCGCACGTGGTC 60.807 66.667 18.88 0.00 0.00 4.02
2313 3318 4.700365 TCTGCTCGCACGTGGTCG 62.700 66.667 18.88 13.44 43.34 4.79
2322 3327 2.964174 ACGTGGTCGCGTGGATAA 59.036 55.556 5.77 0.00 43.99 1.75
2323 3328 1.289694 ACGTGGTCGCGTGGATAAA 59.710 52.632 5.77 0.00 43.99 1.40
2324 3329 0.319727 ACGTGGTCGCGTGGATAAAA 60.320 50.000 5.77 0.00 43.99 1.52
2325 3330 1.003851 CGTGGTCGCGTGGATAAAAT 58.996 50.000 5.77 0.00 0.00 1.82
2326 3331 1.005347 CGTGGTCGCGTGGATAAAATC 60.005 52.381 5.77 0.00 0.00 2.17
2327 3332 2.277084 GTGGTCGCGTGGATAAAATCT 58.723 47.619 5.77 0.00 0.00 2.40
2328 3333 2.030457 GTGGTCGCGTGGATAAAATCTG 59.970 50.000 5.77 0.00 0.00 2.90
2329 3334 2.277084 GGTCGCGTGGATAAAATCTGT 58.723 47.619 5.77 0.00 0.00 3.41
2330 3335 2.284417 GGTCGCGTGGATAAAATCTGTC 59.716 50.000 5.77 0.00 0.00 3.51
2331 3336 3.187700 GTCGCGTGGATAAAATCTGTCT 58.812 45.455 5.77 0.00 0.00 3.41
2332 3337 3.243177 GTCGCGTGGATAAAATCTGTCTC 59.757 47.826 5.77 0.00 0.00 3.36
2333 3338 3.130516 TCGCGTGGATAAAATCTGTCTCT 59.869 43.478 5.77 0.00 0.00 3.10
2334 3339 3.243877 CGCGTGGATAAAATCTGTCTCTG 59.756 47.826 0.00 0.00 0.00 3.35
2335 3340 4.433615 GCGTGGATAAAATCTGTCTCTGA 58.566 43.478 0.00 0.00 0.00 3.27
2336 3341 4.505922 GCGTGGATAAAATCTGTCTCTGAG 59.494 45.833 0.00 0.00 0.00 3.35
2337 3342 5.679894 GCGTGGATAAAATCTGTCTCTGAGA 60.680 44.000 2.58 2.58 0.00 3.27
2338 3343 6.333416 CGTGGATAAAATCTGTCTCTGAGAA 58.667 40.000 9.31 0.00 0.00 2.87
2339 3344 6.254589 CGTGGATAAAATCTGTCTCTGAGAAC 59.745 42.308 9.31 4.78 0.00 3.01
2340 3345 6.254589 GTGGATAAAATCTGTCTCTGAGAACG 59.745 42.308 9.31 3.64 0.00 3.95
2341 3346 6.071334 TGGATAAAATCTGTCTCTGAGAACGT 60.071 38.462 9.31 0.00 0.00 3.99
2342 3347 6.474102 GGATAAAATCTGTCTCTGAGAACGTC 59.526 42.308 9.31 0.00 0.00 4.34
2343 3348 5.461032 AAAATCTGTCTCTGAGAACGTCT 57.539 39.130 9.31 0.00 0.00 4.18
2344 3349 4.433186 AATCTGTCTCTGAGAACGTCTG 57.567 45.455 9.31 1.62 0.00 3.51
2345 3350 3.127425 TCTGTCTCTGAGAACGTCTGA 57.873 47.619 9.31 3.97 0.00 3.27
2346 3351 3.477530 TCTGTCTCTGAGAACGTCTGAA 58.522 45.455 9.31 0.00 33.10 3.02
2347 3352 4.075682 TCTGTCTCTGAGAACGTCTGAAT 58.924 43.478 9.31 0.00 33.10 2.57
2348 3353 4.520874 TCTGTCTCTGAGAACGTCTGAATT 59.479 41.667 9.31 0.00 33.10 2.17
2349 3354 5.010112 TCTGTCTCTGAGAACGTCTGAATTT 59.990 40.000 9.31 0.00 33.10 1.82
2350 3355 4.984785 TGTCTCTGAGAACGTCTGAATTTG 59.015 41.667 9.31 0.00 33.10 2.32
2351 3356 5.221244 TGTCTCTGAGAACGTCTGAATTTGA 60.221 40.000 9.31 0.00 33.10 2.69
2352 3357 5.692204 GTCTCTGAGAACGTCTGAATTTGAA 59.308 40.000 9.31 0.00 33.10 2.69
2353 3358 6.201044 GTCTCTGAGAACGTCTGAATTTGAAA 59.799 38.462 9.31 0.00 33.10 2.69
2354 3359 6.201044 TCTCTGAGAACGTCTGAATTTGAAAC 59.799 38.462 4.57 0.00 33.10 2.78
2355 3360 5.051039 TCTGAGAACGTCTGAATTTGAAACG 60.051 40.000 0.00 0.00 39.16 3.60
2356 3361 3.873529 AGAACGTCTGAATTTGAAACGC 58.126 40.909 0.00 0.00 36.85 4.84
2357 3362 3.560068 AGAACGTCTGAATTTGAAACGCT 59.440 39.130 0.00 0.00 36.85 5.07
2358 3363 4.748102 AGAACGTCTGAATTTGAAACGCTA 59.252 37.500 0.00 0.00 36.85 4.26
2359 3364 5.235616 AGAACGTCTGAATTTGAAACGCTAA 59.764 36.000 0.00 0.00 36.85 3.09
2360 3365 5.018695 ACGTCTGAATTTGAAACGCTAAG 57.981 39.130 0.00 0.00 36.85 2.18
2361 3366 4.084013 ACGTCTGAATTTGAAACGCTAAGG 60.084 41.667 0.00 0.00 36.85 2.69
2362 3367 4.669197 CGTCTGAATTTGAAACGCTAAGGG 60.669 45.833 0.00 0.00 0.00 3.95
2363 3368 3.756434 TCTGAATTTGAAACGCTAAGGGG 59.244 43.478 0.00 0.00 0.00 4.79
2364 3369 2.230266 TGAATTTGAAACGCTAAGGGGC 59.770 45.455 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 269 6.481976 CCGATTCTATTATTGCACCACAAGTA 59.518 38.462 0.00 0.00 42.87 2.24
284 285 4.021016 GCTAGTTGGACCATCCGATTCTAT 60.021 45.833 0.00 0.00 40.17 1.98
325 328 6.092670 GTCTTGACTGCATAAAATCAGCTGTA 59.907 38.462 14.67 0.00 39.92 2.74
357 360 3.559242 GCCATTGTCAGATAGAGAAGTGC 59.441 47.826 0.00 0.00 32.48 4.40
407 410 4.695455 CGTCAACAACAATAGTGGGAAGAT 59.305 41.667 0.00 0.00 0.00 2.40
586 590 5.535753 AAAGACCATCCACTTTTTCCAAG 57.464 39.130 0.00 0.00 33.36 3.61
591 595 8.585018 CCTGTATTAAAAGACCATCCACTTTTT 58.415 33.333 0.00 0.00 41.51 1.94
804 1378 7.596749 ACGAATGACTTTTTGGACATACTAG 57.403 36.000 0.00 0.00 0.00 2.57
809 1383 5.765182 AGAGAACGAATGACTTTTTGGACAT 59.235 36.000 0.00 0.00 0.00 3.06
810 1384 5.123227 AGAGAACGAATGACTTTTTGGACA 58.877 37.500 0.00 0.00 0.00 4.02
833 1407 1.303236 CCATGGGAAGTGGCGACAA 60.303 57.895 2.85 0.00 46.06 3.18
875 1451 3.113191 TGGGTTGTGATGGCCATTTAT 57.887 42.857 21.84 0.00 0.00 1.40
881 1457 4.440145 ACATGGGTTGTGATGGCC 57.560 55.556 0.00 0.00 37.11 5.36
921 1497 1.328986 GCTAGAAGGAAGTGATTGCGC 59.671 52.381 0.00 0.00 0.00 6.09
938 1514 1.725557 GACGGTGGATCTGCTCGCTA 61.726 60.000 0.00 0.00 0.00 4.26
940 1516 2.583593 GACGGTGGATCTGCTCGC 60.584 66.667 0.00 0.00 0.00 5.03
966 1556 4.938756 TGGGGCCTGGGGAGTTGT 62.939 66.667 0.84 0.00 0.00 3.32
975 1565 2.282462 GACTGGTGTTGGGGCCTG 60.282 66.667 0.84 0.00 0.00 4.85
977 1567 3.224007 ATGGACTGGTGTTGGGGCC 62.224 63.158 0.00 0.00 0.00 5.80
978 1568 1.678970 GATGGACTGGTGTTGGGGC 60.679 63.158 0.00 0.00 0.00 5.80
981 1571 2.566833 TGAAGATGGACTGGTGTTGG 57.433 50.000 0.00 0.00 0.00 3.77
1010 1600 2.593978 CGAGGAGGAGGACGGGTA 59.406 66.667 0.00 0.00 0.00 3.69
1137 1733 4.162690 GCCCATCCGCCGAGTTCT 62.163 66.667 0.00 0.00 0.00 3.01
1305 1901 2.953466 TGGTCCAATACTGCTCGTAC 57.047 50.000 0.00 0.00 0.00 3.67
1316 1912 2.355115 GGCGGGTCTTGGTCCAAT 59.645 61.111 4.34 0.00 0.00 3.16
1317 1913 3.172106 TGGCGGGTCTTGGTCCAA 61.172 61.111 3.76 3.76 0.00 3.53
1418 2014 1.837439 ACGGGCAGATGAGATTAACCA 59.163 47.619 0.00 0.00 0.00 3.67
1454 2052 2.698855 ATTGGCAGCACTAGTGGTAG 57.301 50.000 26.11 20.00 39.58 3.18
1476 2074 0.440758 CAAACCGCGCGACTCATTTA 59.559 50.000 34.63 0.00 0.00 1.40
1477 2075 1.206578 CAAACCGCGCGACTCATTT 59.793 52.632 34.63 19.10 0.00 2.32
1478 2076 2.677003 CCAAACCGCGCGACTCATT 61.677 57.895 34.63 15.09 0.00 2.57
1503 2101 2.554365 GATGAACTGCAGCGCGTGAC 62.554 60.000 15.27 0.00 0.00 3.67
1506 2104 1.699656 GATGATGAACTGCAGCGCGT 61.700 55.000 15.27 7.28 35.09 6.01
1507 2105 1.011463 GATGATGAACTGCAGCGCG 60.011 57.895 15.27 0.00 35.09 6.86
1508 2106 1.094073 AGGATGATGAACTGCAGCGC 61.094 55.000 15.27 0.00 35.09 5.92
1509 2107 0.656259 CAGGATGATGAACTGCAGCG 59.344 55.000 15.27 0.00 39.69 5.18
1510 2108 2.034104 TCAGGATGATGAACTGCAGC 57.966 50.000 15.27 0.00 42.56 5.25
1555 2155 9.855021 GTACTCACAATTTTATTTGCCAGTATT 57.145 29.630 0.00 0.00 31.70 1.89
1556 2156 9.243105 AGTACTCACAATTTTATTTGCCAGTAT 57.757 29.630 0.00 0.00 31.70 2.12
1557 2157 8.630054 AGTACTCACAATTTTATTTGCCAGTA 57.370 30.769 0.00 0.00 0.00 2.74
1558 2158 7.448469 AGAGTACTCACAATTTTATTTGCCAGT 59.552 33.333 24.44 0.00 0.00 4.00
1559 2159 7.752239 CAGAGTACTCACAATTTTATTTGCCAG 59.248 37.037 24.44 0.00 0.00 4.85
1593 2193 0.531532 GATGACAGCCAGGGATCACG 60.532 60.000 0.00 0.00 0.00 4.35
1620 2220 3.944015 CTCTTCCTTCGGAATCAAGCATT 59.056 43.478 0.00 0.00 41.23 3.56
1628 2228 1.915983 GCCCCTCTTCCTTCGGAAT 59.084 57.895 0.00 0.00 41.23 3.01
1646 2246 2.243957 TGAGCGTGCAGTGAAACCG 61.244 57.895 0.00 0.00 37.80 4.44
1678 2278 2.322355 AGACAATCATCGCCAGAAGG 57.678 50.000 0.00 0.00 38.23 3.46
1720 2320 1.621317 CGGGGTTTTGGCACCTTATTT 59.379 47.619 0.00 0.00 36.97 1.40
1725 2325 2.520741 CACGGGGTTTTGGCACCT 60.521 61.111 0.00 0.00 36.97 4.00
1768 2378 9.035607 TCTCAAAAATAAAATAAAGCACGCAAA 57.964 25.926 0.00 0.00 0.00 3.68
1791 2401 0.250513 ACACAAGCCTCCGGAATCTC 59.749 55.000 5.23 0.00 0.00 2.75
1798 2412 2.163818 TGACTTTACACAAGCCTCCG 57.836 50.000 0.00 0.00 0.00 4.63
1832 2446 3.188460 TCGAAACTAATCTTTGCAGTGGC 59.812 43.478 0.00 0.00 41.68 5.01
1838 2452 5.204673 ACACGATCGAAACTAATCTTTGC 57.795 39.130 24.34 0.00 0.00 3.68
1839 2453 7.507672 ACTACACGATCGAAACTAATCTTTG 57.492 36.000 24.34 7.26 0.00 2.77
1844 2458 6.750963 GGAAGAACTACACGATCGAAACTAAT 59.249 38.462 24.34 1.75 0.00 1.73
1848 2462 3.300066 CGGAAGAACTACACGATCGAAAC 59.700 47.826 24.34 5.70 0.00 2.78
1854 2468 1.816835 TGCTCGGAAGAACTACACGAT 59.183 47.619 0.00 0.00 41.32 3.73
1855 2469 1.199327 CTGCTCGGAAGAACTACACGA 59.801 52.381 0.00 0.00 41.32 4.35
1856 2470 1.199327 TCTGCTCGGAAGAACTACACG 59.801 52.381 0.00 0.00 41.32 4.49
1857 2471 2.030185 TGTCTGCTCGGAAGAACTACAC 60.030 50.000 0.00 0.00 41.32 2.90
1858 2472 2.229062 CTGTCTGCTCGGAAGAACTACA 59.771 50.000 0.00 0.00 41.32 2.74
1859 2473 2.488545 TCTGTCTGCTCGGAAGAACTAC 59.511 50.000 0.00 0.00 41.32 2.73
1860 2474 2.791655 TCTGTCTGCTCGGAAGAACTA 58.208 47.619 0.00 0.00 41.32 2.24
1861 2475 1.621992 TCTGTCTGCTCGGAAGAACT 58.378 50.000 0.00 0.00 41.32 3.01
1862 2476 2.663826 ATCTGTCTGCTCGGAAGAAC 57.336 50.000 0.00 0.00 41.32 3.01
1863 2477 3.357203 ACTATCTGTCTGCTCGGAAGAA 58.643 45.455 0.00 0.00 41.32 2.52
1864 2478 3.006112 ACTATCTGTCTGCTCGGAAGA 57.994 47.619 0.00 0.00 39.12 2.87
1865 2479 4.377943 CGATACTATCTGTCTGCTCGGAAG 60.378 50.000 0.00 0.00 0.00 3.46
1866 2480 3.498777 CGATACTATCTGTCTGCTCGGAA 59.501 47.826 0.00 0.00 0.00 4.30
1867 2481 3.067833 CGATACTATCTGTCTGCTCGGA 58.932 50.000 0.00 0.00 0.00 4.55
1868 2482 3.067833 TCGATACTATCTGTCTGCTCGG 58.932 50.000 0.00 0.00 0.00 4.63
1869 2483 4.629634 AGATCGATACTATCTGTCTGCTCG 59.370 45.833 0.00 0.00 32.44 5.03
1870 2484 6.148645 TGAAGATCGATACTATCTGTCTGCTC 59.851 42.308 0.00 0.00 33.95 4.26
1871 2485 6.000840 TGAAGATCGATACTATCTGTCTGCT 58.999 40.000 0.00 0.00 33.95 4.24
1872 2486 6.247727 TGAAGATCGATACTATCTGTCTGC 57.752 41.667 0.00 0.00 33.95 4.26
1873 2487 7.589587 GTGTTGAAGATCGATACTATCTGTCTG 59.410 40.741 0.00 0.00 33.95 3.51
1874 2488 7.283354 TGTGTTGAAGATCGATACTATCTGTCT 59.717 37.037 0.00 0.00 33.95 3.41
1875 2489 7.418408 TGTGTTGAAGATCGATACTATCTGTC 58.582 38.462 0.00 0.00 33.95 3.51
1876 2490 7.334844 TGTGTTGAAGATCGATACTATCTGT 57.665 36.000 0.00 0.00 33.95 3.41
1877 2491 8.446489 GATGTGTTGAAGATCGATACTATCTG 57.554 38.462 0.00 0.00 33.95 2.90
1888 2502 6.892691 AGAGAAAAACGATGTGTTGAAGATC 58.107 36.000 0.00 0.00 40.84 2.75
1889 2503 6.867662 AGAGAAAAACGATGTGTTGAAGAT 57.132 33.333 0.00 0.00 40.84 2.40
1890 2504 6.238374 GGAAGAGAAAAACGATGTGTTGAAGA 60.238 38.462 0.00 0.00 40.84 2.87
1891 2505 5.909610 GGAAGAGAAAAACGATGTGTTGAAG 59.090 40.000 0.00 0.00 40.84 3.02
1892 2506 5.355630 TGGAAGAGAAAAACGATGTGTTGAA 59.644 36.000 0.00 0.00 40.84 2.69
1893 2507 4.878971 TGGAAGAGAAAAACGATGTGTTGA 59.121 37.500 0.00 0.00 40.84 3.18
1894 2508 4.970003 GTGGAAGAGAAAAACGATGTGTTG 59.030 41.667 0.00 0.00 40.84 3.33
1895 2509 4.260620 CGTGGAAGAGAAAAACGATGTGTT 60.261 41.667 0.00 0.00 44.59 3.32
1896 2510 3.247648 CGTGGAAGAGAAAAACGATGTGT 59.752 43.478 0.00 0.00 36.38 3.72
1897 2511 3.247648 ACGTGGAAGAGAAAAACGATGTG 59.752 43.478 0.00 0.00 37.66 3.21
1898 2512 3.247648 CACGTGGAAGAGAAAAACGATGT 59.752 43.478 7.95 0.00 37.66 3.06
1899 2513 3.363970 CCACGTGGAAGAGAAAAACGATG 60.364 47.826 31.31 0.00 37.66 3.84
1900 2514 2.806244 CCACGTGGAAGAGAAAAACGAT 59.194 45.455 31.31 0.00 37.66 3.73
1901 2515 2.159071 TCCACGTGGAAGAGAAAAACGA 60.159 45.455 34.60 7.29 42.18 3.85
1902 2516 2.206750 TCCACGTGGAAGAGAAAAACG 58.793 47.619 34.60 3.93 42.18 3.60
1914 2528 1.066143 AGCCAGAGTTTATCCACGTGG 60.066 52.381 29.26 29.26 0.00 4.94
1927 2541 4.159321 TCAGACACTATGAGAAAGCCAGAG 59.841 45.833 0.00 0.00 0.00 3.35
1957 2571 5.943706 TGAGCCGATAGTGATCTAGTAAC 57.056 43.478 0.00 0.00 0.00 2.50
1959 2573 5.412904 CACATGAGCCGATAGTGATCTAGTA 59.587 44.000 0.00 0.00 32.14 1.82
1964 2578 3.573598 CTCACATGAGCCGATAGTGATC 58.426 50.000 0.00 0.00 38.40 2.92
1965 2579 2.298446 CCTCACATGAGCCGATAGTGAT 59.702 50.000 0.00 0.00 40.75 3.06
2011 2625 0.238289 CTGGAAAACATTGAGCGCGT 59.762 50.000 8.43 0.00 0.00 6.01
2016 2630 1.879380 TGCGGACTGGAAAACATTGAG 59.121 47.619 0.00 0.00 0.00 3.02
2019 2633 2.228822 GTGATGCGGACTGGAAAACATT 59.771 45.455 0.00 0.00 0.00 2.71
2020 2634 1.812571 GTGATGCGGACTGGAAAACAT 59.187 47.619 0.00 0.00 0.00 2.71
2028 2642 1.078759 GAAGACGGTGATGCGGACTG 61.079 60.000 0.00 0.00 0.00 3.51
2030 2644 0.802607 GAGAAGACGGTGATGCGGAC 60.803 60.000 0.00 0.00 0.00 4.79
2032 2646 0.526524 GAGAGAAGACGGTGATGCGG 60.527 60.000 0.00 0.00 0.00 5.69
2033 2647 0.171231 TGAGAGAAGACGGTGATGCG 59.829 55.000 0.00 0.00 0.00 4.73
2034 2648 1.996191 GTTGAGAGAAGACGGTGATGC 59.004 52.381 0.00 0.00 0.00 3.91
2035 2649 3.303881 TGTTGAGAGAAGACGGTGATG 57.696 47.619 0.00 0.00 0.00 3.07
2037 2651 2.231478 GGATGTTGAGAGAAGACGGTGA 59.769 50.000 0.00 0.00 0.00 4.02
2039 2653 1.550976 GGGATGTTGAGAGAAGACGGT 59.449 52.381 0.00 0.00 0.00 4.83
2040 2654 1.469940 CGGGATGTTGAGAGAAGACGG 60.470 57.143 0.00 0.00 0.00 4.79
2041 2655 1.202582 ACGGGATGTTGAGAGAAGACG 59.797 52.381 0.00 0.00 0.00 4.18
2042 2656 2.231478 TCACGGGATGTTGAGAGAAGAC 59.769 50.000 0.00 0.00 0.00 3.01
2043 2657 2.525368 TCACGGGATGTTGAGAGAAGA 58.475 47.619 0.00 0.00 0.00 2.87
2044 2658 3.257393 CTTCACGGGATGTTGAGAGAAG 58.743 50.000 0.00 0.00 0.00 2.85
2045 2659 2.632996 ACTTCACGGGATGTTGAGAGAA 59.367 45.455 0.00 0.00 0.00 2.87
2046 2660 2.248248 ACTTCACGGGATGTTGAGAGA 58.752 47.619 0.00 0.00 0.00 3.10
2047 2661 2.751166 ACTTCACGGGATGTTGAGAG 57.249 50.000 0.00 0.00 0.00 3.20
2048 2662 3.071023 AGAAACTTCACGGGATGTTGAGA 59.929 43.478 18.53 0.00 40.21 3.27
2050 2664 3.138304 CAGAAACTTCACGGGATGTTGA 58.862 45.455 18.53 0.00 40.21 3.18
2051 2665 2.226437 CCAGAAACTTCACGGGATGTTG 59.774 50.000 18.53 8.08 40.21 3.33
2052 2666 2.105821 TCCAGAAACTTCACGGGATGTT 59.894 45.455 12.81 12.81 41.58 2.71
2053 2667 1.697432 TCCAGAAACTTCACGGGATGT 59.303 47.619 0.00 0.00 33.22 3.06
2054 2668 2.472695 TCCAGAAACTTCACGGGATG 57.527 50.000 0.00 0.00 0.00 3.51
2058 2672 0.234884 GCGTTCCAGAAACTTCACGG 59.765 55.000 0.00 0.00 35.59 4.94
2067 3070 1.270625 CCTAACCTGTGCGTTCCAGAA 60.271 52.381 0.00 0.00 31.38 3.02
2107 3110 2.967887 ACAAGCCTCCAAAAGCAAATCT 59.032 40.909 0.00 0.00 0.00 2.40
2110 3113 1.830477 ACACAAGCCTCCAAAAGCAAA 59.170 42.857 0.00 0.00 0.00 3.68
2131 3134 1.225855 TGCATGACCGTGACTTTGTC 58.774 50.000 0.00 0.00 0.00 3.18
2133 3136 1.603802 ACTTGCATGACCGTGACTTTG 59.396 47.619 6.60 0.00 0.00 2.77
2136 3139 0.667487 CGACTTGCATGACCGTGACT 60.667 55.000 6.60 0.00 0.00 3.41
2178 3183 8.817100 CCCAAAAGAAGTTGCTTAAAACTAAAG 58.183 33.333 0.00 0.00 39.48 1.85
2179 3184 7.279090 GCCCAAAAGAAGTTGCTTAAAACTAAA 59.721 33.333 0.00 0.00 39.48 1.85
2182 3187 5.116180 GCCCAAAAGAAGTTGCTTAAAACT 58.884 37.500 0.00 0.00 42.21 2.66
2183 3188 4.026062 CGCCCAAAAGAAGTTGCTTAAAAC 60.026 41.667 0.00 0.00 0.00 2.43
2184 3189 4.116238 CGCCCAAAAGAAGTTGCTTAAAA 58.884 39.130 0.00 0.00 0.00 1.52
2185 3190 3.491792 CCGCCCAAAAGAAGTTGCTTAAA 60.492 43.478 0.00 0.00 0.00 1.52
2186 3191 2.035321 CCGCCCAAAAGAAGTTGCTTAA 59.965 45.455 0.00 0.00 0.00 1.85
2187 3192 1.611491 CCGCCCAAAAGAAGTTGCTTA 59.389 47.619 0.00 0.00 0.00 3.09
2188 3193 0.389025 CCGCCCAAAAGAAGTTGCTT 59.611 50.000 0.00 0.00 0.00 3.91
2189 3194 0.467290 TCCGCCCAAAAGAAGTTGCT 60.467 50.000 0.00 0.00 0.00 3.91
2190 3195 0.039165 CTCCGCCCAAAAGAAGTTGC 60.039 55.000 0.00 0.00 0.00 4.17
2191 3196 1.604604 TCTCCGCCCAAAAGAAGTTG 58.395 50.000 0.00 0.00 0.00 3.16
2192 3197 2.358322 TTCTCCGCCCAAAAGAAGTT 57.642 45.000 0.00 0.00 0.00 2.66
2193 3198 2.586648 ATTCTCCGCCCAAAAGAAGT 57.413 45.000 0.00 0.00 32.89 3.01
2194 3199 4.455606 AGATATTCTCCGCCCAAAAGAAG 58.544 43.478 0.00 0.00 32.89 2.85
2195 3200 4.164221 AGAGATATTCTCCGCCCAAAAGAA 59.836 41.667 0.98 0.00 44.42 2.52
2196 3201 3.711704 AGAGATATTCTCCGCCCAAAAGA 59.288 43.478 0.98 0.00 44.42 2.52
2197 3202 4.061596 GAGAGATATTCTCCGCCCAAAAG 58.938 47.826 0.98 0.00 44.42 2.27
2198 3203 4.073293 GAGAGATATTCTCCGCCCAAAA 57.927 45.455 0.98 0.00 44.42 2.44
2199 3204 3.753294 GAGAGATATTCTCCGCCCAAA 57.247 47.619 0.98 0.00 44.42 3.28
2208 3213 4.515944 CCCAACGACGTAGAGAGATATTCT 59.484 45.833 0.00 0.00 39.43 2.40
2209 3214 4.275443 ACCCAACGACGTAGAGAGATATTC 59.725 45.833 0.00 0.00 0.00 1.75
2210 3215 4.205587 ACCCAACGACGTAGAGAGATATT 58.794 43.478 0.00 0.00 0.00 1.28
2211 3216 3.818180 ACCCAACGACGTAGAGAGATAT 58.182 45.455 0.00 0.00 0.00 1.63
2212 3217 3.272574 ACCCAACGACGTAGAGAGATA 57.727 47.619 0.00 0.00 0.00 1.98
2213 3218 2.125773 ACCCAACGACGTAGAGAGAT 57.874 50.000 0.00 0.00 0.00 2.75
2214 3219 2.027745 ACTACCCAACGACGTAGAGAGA 60.028 50.000 0.00 0.00 36.32 3.10
2215 3220 2.354259 ACTACCCAACGACGTAGAGAG 58.646 52.381 0.00 0.00 36.32 3.20
2216 3221 2.479566 ACTACCCAACGACGTAGAGA 57.520 50.000 0.00 0.00 36.32 3.10
2217 3222 4.083324 TGTTTACTACCCAACGACGTAGAG 60.083 45.833 0.00 0.00 36.32 2.43
2218 3223 3.818210 TGTTTACTACCCAACGACGTAGA 59.182 43.478 0.00 0.00 36.32 2.59
2219 3224 3.914364 GTGTTTACTACCCAACGACGTAG 59.086 47.826 0.00 0.00 38.34 3.51
2220 3225 3.568007 AGTGTTTACTACCCAACGACGTA 59.432 43.478 0.00 0.00 34.74 3.57
2221 3226 2.362077 AGTGTTTACTACCCAACGACGT 59.638 45.455 0.00 0.00 34.74 4.34
2222 3227 2.727798 CAGTGTTTACTACCCAACGACG 59.272 50.000 0.00 0.00 34.74 5.12
2223 3228 3.721035 ACAGTGTTTACTACCCAACGAC 58.279 45.455 0.00 0.00 34.74 4.34
2224 3229 3.384146 TGACAGTGTTTACTACCCAACGA 59.616 43.478 0.00 0.00 34.74 3.85
2225 3230 3.719924 TGACAGTGTTTACTACCCAACG 58.280 45.455 0.00 0.00 34.74 4.10
2226 3231 4.952460 TCTGACAGTGTTTACTACCCAAC 58.048 43.478 0.00 0.00 34.74 3.77
2227 3232 5.617528 TTCTGACAGTGTTTACTACCCAA 57.382 39.130 0.00 0.00 34.74 4.12
2228 3233 5.617528 TTTCTGACAGTGTTTACTACCCA 57.382 39.130 0.00 0.00 34.74 4.51
2229 3234 5.995897 ACATTTCTGACAGTGTTTACTACCC 59.004 40.000 0.00 0.00 34.74 3.69
2230 3235 6.704493 TCACATTTCTGACAGTGTTTACTACC 59.296 38.462 0.00 0.00 34.74 3.18
2231 3236 7.652105 TCTCACATTTCTGACAGTGTTTACTAC 59.348 37.037 0.00 0.00 34.74 2.73
2232 3237 7.722363 TCTCACATTTCTGACAGTGTTTACTA 58.278 34.615 0.00 0.00 34.74 1.82
2233 3238 6.582636 TCTCACATTTCTGACAGTGTTTACT 58.417 36.000 0.00 0.00 37.75 2.24
2234 3239 6.073548 CCTCTCACATTTCTGACAGTGTTTAC 60.074 42.308 0.00 0.00 33.84 2.01
2235 3240 5.991606 CCTCTCACATTTCTGACAGTGTTTA 59.008 40.000 0.00 0.00 33.84 2.01
2236 3241 4.818546 CCTCTCACATTTCTGACAGTGTTT 59.181 41.667 0.00 0.00 33.84 2.83
2237 3242 4.384056 CCTCTCACATTTCTGACAGTGTT 58.616 43.478 0.00 0.00 33.84 3.32
2238 3243 3.244353 CCCTCTCACATTTCTGACAGTGT 60.244 47.826 0.00 0.00 33.84 3.55
2239 3244 3.244353 ACCCTCTCACATTTCTGACAGTG 60.244 47.826 1.59 0.00 0.00 3.66
2240 3245 2.975489 ACCCTCTCACATTTCTGACAGT 59.025 45.455 1.59 0.00 0.00 3.55
2241 3246 3.692257 ACCCTCTCACATTTCTGACAG 57.308 47.619 0.00 0.00 0.00 3.51
2242 3247 5.560722 TTTACCCTCTCACATTTCTGACA 57.439 39.130 0.00 0.00 0.00 3.58
2243 3248 5.412904 CCTTTTACCCTCTCACATTTCTGAC 59.587 44.000 0.00 0.00 0.00 3.51
2244 3249 5.073144 ACCTTTTACCCTCTCACATTTCTGA 59.927 40.000 0.00 0.00 0.00 3.27
2245 3250 5.182001 CACCTTTTACCCTCTCACATTTCTG 59.818 44.000 0.00 0.00 0.00 3.02
2246 3251 5.316987 CACCTTTTACCCTCTCACATTTCT 58.683 41.667 0.00 0.00 0.00 2.52
2247 3252 4.459337 CCACCTTTTACCCTCTCACATTTC 59.541 45.833 0.00 0.00 0.00 2.17
2248 3253 4.105697 TCCACCTTTTACCCTCTCACATTT 59.894 41.667 0.00 0.00 0.00 2.32
2249 3254 3.655777 TCCACCTTTTACCCTCTCACATT 59.344 43.478 0.00 0.00 0.00 2.71
2250 3255 3.256704 TCCACCTTTTACCCTCTCACAT 58.743 45.455 0.00 0.00 0.00 3.21
2251 3256 2.637872 CTCCACCTTTTACCCTCTCACA 59.362 50.000 0.00 0.00 0.00 3.58
2252 3257 2.638363 ACTCCACCTTTTACCCTCTCAC 59.362 50.000 0.00 0.00 0.00 3.51
2253 3258 2.986050 ACTCCACCTTTTACCCTCTCA 58.014 47.619 0.00 0.00 0.00 3.27
2254 3259 3.326880 TGAACTCCACCTTTTACCCTCTC 59.673 47.826 0.00 0.00 0.00 3.20
2255 3260 3.072622 GTGAACTCCACCTTTTACCCTCT 59.927 47.826 0.00 0.00 39.86 3.69
2256 3261 3.072622 AGTGAACTCCACCTTTTACCCTC 59.927 47.826 0.00 0.00 46.87 4.30
2257 3262 3.053826 AGTGAACTCCACCTTTTACCCT 58.946 45.455 0.00 0.00 46.87 4.34
2258 3263 3.503800 AGTGAACTCCACCTTTTACCC 57.496 47.619 0.00 0.00 46.87 3.69
2259 3264 4.715713 AGAAGTGAACTCCACCTTTTACC 58.284 43.478 0.00 0.00 46.87 2.85
2260 3265 6.694877 AAAGAAGTGAACTCCACCTTTTAC 57.305 37.500 0.00 0.00 46.87 2.01
2261 3266 7.712204 AAAAAGAAGTGAACTCCACCTTTTA 57.288 32.000 0.00 0.00 46.87 1.52
2262 3267 6.605471 AAAAAGAAGTGAACTCCACCTTTT 57.395 33.333 0.00 0.00 46.87 2.27
2292 3297 2.661566 CCACGTGCGAGCAGAGTTG 61.662 63.158 10.91 0.00 0.00 3.16
2293 3298 2.356313 CCACGTGCGAGCAGAGTT 60.356 61.111 10.91 0.00 0.00 3.01
2294 3299 3.559657 GACCACGTGCGAGCAGAGT 62.560 63.158 10.91 0.00 0.00 3.24
2295 3300 2.807045 GACCACGTGCGAGCAGAG 60.807 66.667 10.91 0.00 0.00 3.35
2296 3301 4.700365 CGACCACGTGCGAGCAGA 62.700 66.667 10.91 0.00 34.56 4.26
2306 3311 1.003851 ATTTTATCCACGCGACCACG 58.996 50.000 15.93 0.00 42.93 4.94
2307 3312 2.030457 CAGATTTTATCCACGCGACCAC 59.970 50.000 15.93 0.00 0.00 4.16
2308 3313 2.276201 CAGATTTTATCCACGCGACCA 58.724 47.619 15.93 0.00 0.00 4.02
2309 3314 2.277084 ACAGATTTTATCCACGCGACC 58.723 47.619 15.93 0.00 0.00 4.79
2310 3315 3.187700 AGACAGATTTTATCCACGCGAC 58.812 45.455 15.93 0.00 0.00 5.19
2311 3316 3.130516 AGAGACAGATTTTATCCACGCGA 59.869 43.478 15.93 0.00 0.00 5.87
2312 3317 3.243877 CAGAGACAGATTTTATCCACGCG 59.756 47.826 3.53 3.53 0.00 6.01
2313 3318 4.433615 TCAGAGACAGATTTTATCCACGC 58.566 43.478 0.00 0.00 0.00 5.34
2314 3319 5.895928 TCTCAGAGACAGATTTTATCCACG 58.104 41.667 0.00 0.00 0.00 4.94
2315 3320 6.254589 CGTTCTCAGAGACAGATTTTATCCAC 59.745 42.308 0.00 0.00 0.00 4.02
2316 3321 6.071334 ACGTTCTCAGAGACAGATTTTATCCA 60.071 38.462 0.00 0.00 0.00 3.41
2317 3322 6.334202 ACGTTCTCAGAGACAGATTTTATCC 58.666 40.000 0.00 0.00 0.00 2.59
2318 3323 7.219917 CAGACGTTCTCAGAGACAGATTTTATC 59.780 40.741 0.00 0.00 0.00 1.75
2319 3324 7.032580 CAGACGTTCTCAGAGACAGATTTTAT 58.967 38.462 0.00 0.00 0.00 1.40
2320 3325 6.206829 TCAGACGTTCTCAGAGACAGATTTTA 59.793 38.462 0.00 0.00 0.00 1.52
2321 3326 5.010112 TCAGACGTTCTCAGAGACAGATTTT 59.990 40.000 0.00 0.00 0.00 1.82
2322 3327 4.520874 TCAGACGTTCTCAGAGACAGATTT 59.479 41.667 0.00 0.00 0.00 2.17
2323 3328 4.075682 TCAGACGTTCTCAGAGACAGATT 58.924 43.478 0.00 0.00 0.00 2.40
2324 3329 3.680490 TCAGACGTTCTCAGAGACAGAT 58.320 45.455 0.00 0.00 0.00 2.90
2325 3330 3.127425 TCAGACGTTCTCAGAGACAGA 57.873 47.619 0.00 0.00 0.00 3.41
2326 3331 3.906014 TTCAGACGTTCTCAGAGACAG 57.094 47.619 0.00 0.00 0.00 3.51
2327 3332 4.855715 AATTCAGACGTTCTCAGAGACA 57.144 40.909 0.00 0.00 0.00 3.41
2328 3333 5.223382 TCAAATTCAGACGTTCTCAGAGAC 58.777 41.667 0.00 0.00 0.00 3.36
2329 3334 5.453567 TCAAATTCAGACGTTCTCAGAGA 57.546 39.130 0.00 0.00 0.00 3.10
2330 3335 6.358762 GTTTCAAATTCAGACGTTCTCAGAG 58.641 40.000 0.00 0.00 0.00 3.35
2331 3336 5.051039 CGTTTCAAATTCAGACGTTCTCAGA 60.051 40.000 0.00 0.00 0.00 3.27
2332 3337 5.133264 CGTTTCAAATTCAGACGTTCTCAG 58.867 41.667 0.00 0.00 0.00 3.35
2333 3338 4.551990 GCGTTTCAAATTCAGACGTTCTCA 60.552 41.667 0.00 0.00 36.22 3.27
2334 3339 3.900703 GCGTTTCAAATTCAGACGTTCTC 59.099 43.478 0.00 0.00 36.22 2.87
2335 3340 3.560068 AGCGTTTCAAATTCAGACGTTCT 59.440 39.130 0.00 0.00 36.22 3.01
2336 3341 3.873529 AGCGTTTCAAATTCAGACGTTC 58.126 40.909 0.00 0.00 36.22 3.95
2337 3342 3.963383 AGCGTTTCAAATTCAGACGTT 57.037 38.095 0.00 0.00 36.22 3.99
2338 3343 4.084013 CCTTAGCGTTTCAAATTCAGACGT 60.084 41.667 0.00 0.00 36.22 4.34
2339 3344 4.394795 CCTTAGCGTTTCAAATTCAGACG 58.605 43.478 0.00 0.00 36.85 4.18
2340 3345 4.379499 CCCCTTAGCGTTTCAAATTCAGAC 60.379 45.833 0.00 0.00 0.00 3.51
2341 3346 3.756434 CCCCTTAGCGTTTCAAATTCAGA 59.244 43.478 0.00 0.00 0.00 3.27
2342 3347 3.673323 GCCCCTTAGCGTTTCAAATTCAG 60.673 47.826 0.00 0.00 0.00 3.02
2343 3348 2.230266 GCCCCTTAGCGTTTCAAATTCA 59.770 45.455 0.00 0.00 0.00 2.57
2344 3349 2.876091 GCCCCTTAGCGTTTCAAATTC 58.124 47.619 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.