Multiple sequence alignment - TraesCS2B01G147700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G147700 chr2B 100.000 3420 0 0 1 3420 114047597 114044178 0.000000e+00 6316.0
1 TraesCS2B01G147700 chr2B 93.750 48 2 1 3125 3171 114044429 114044382 1.700000e-08 71.3
2 TraesCS2B01G147700 chr2B 93.750 48 2 1 3169 3216 114044473 114044427 1.700000e-08 71.3
3 TraesCS2B01G147700 chr2B 100.000 32 0 0 2973 3004 114044570 114044539 3.690000e-05 60.2
4 TraesCS2B01G147700 chr2B 100.000 32 0 0 3028 3059 114044625 114044594 3.690000e-05 60.2
5 TraesCS2B01G147700 chr2A 91.998 1637 105 17 1 1615 74107116 74105484 0.000000e+00 2274.0
6 TraesCS2B01G147700 chr2A 91.932 1066 79 6 1693 2753 74105277 74104214 0.000000e+00 1485.0
7 TraesCS2B01G147700 chr2A 94.241 191 10 1 3169 3359 74103348 74103159 1.200000e-74 291.0
8 TraesCS2B01G147700 chr2A 83.803 284 21 10 1436 1696 490351203 490350922 2.640000e-61 246.0
9 TraesCS2B01G147700 chr2A 90.698 129 11 1 3044 3171 74103430 74103302 1.630000e-38 171.0
10 TraesCS2B01G147700 chr2D 91.854 1645 97 21 1 1615 74937332 74935695 0.000000e+00 2261.0
11 TraesCS2B01G147700 chr2D 91.182 1168 70 18 1693 2852 74935483 74934341 0.000000e+00 1555.0
12 TraesCS2B01G147700 chr2D 76.617 804 129 37 1867 2639 79401824 79401049 4.140000e-104 388.0
13 TraesCS2B01G147700 chr7B 85.934 391 40 7 1988 2368 15807896 15807511 1.480000e-108 403.0
14 TraesCS2B01G147700 chr7B 84.000 275 37 6 1690 1959 15808161 15807889 1.220000e-64 257.0
15 TraesCS2B01G147700 chr4A 84.507 284 19 10 1436 1696 428994806 428995087 1.220000e-64 257.0
16 TraesCS2B01G147700 chr4A 83.803 284 21 10 1436 1696 29364954 29364673 2.640000e-61 246.0
17 TraesCS2B01G147700 chr4A 83.392 283 22 10 1437 1696 708069688 708069968 4.410000e-59 239.0
18 TraesCS2B01G147700 chr4A 83.392 283 22 10 1437 1696 708092343 708092623 4.410000e-59 239.0
19 TraesCS2B01G147700 chr4B 83.849 291 21 11 1429 1696 631791931 631792218 1.580000e-63 254.0
20 TraesCS2B01G147700 chr4B 83.803 284 21 10 1436 1696 458278969 458279250 2.640000e-61 246.0
21 TraesCS2B01G147700 chr5B 83.803 284 21 10 1436 1696 42994666 42994947 2.640000e-61 246.0
22 TraesCS2B01G147700 chr5A 83.803 284 20 11 1436 1696 559597801 559597521 2.640000e-61 246.0
23 TraesCS2B01G147700 chr5A 83.333 288 23 10 1436 1700 652900337 652900052 3.410000e-60 243.0
24 TraesCS2B01G147700 chr5A 83.451 284 22 10 1436 1696 98398017 98398298 1.230000e-59 241.0
25 TraesCS2B01G147700 chr1B 83.803 284 20 12 1436 1696 280475684 280475964 2.640000e-61 246.0
26 TraesCS2B01G147700 chr6B 83.451 284 22 10 1436 1696 576405215 576405496 1.230000e-59 241.0
27 TraesCS2B01G147700 chrUn 83.392 283 22 10 1437 1696 50448500 50448780 4.410000e-59 239.0
28 TraesCS2B01G147700 chr7A 82.746 284 24 10 1436 1696 112912790 112913071 2.650000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G147700 chr2B 114044178 114047597 3419 True 1315.80 6316 97.50000 1 3420 5 chr2B.!!$R1 3419
1 TraesCS2B01G147700 chr2A 74103159 74107116 3957 True 1055.25 2274 92.21725 1 3359 4 chr2A.!!$R2 3358
2 TraesCS2B01G147700 chr2D 74934341 74937332 2991 True 1908.00 2261 91.51800 1 2852 2 chr2D.!!$R2 2851
3 TraesCS2B01G147700 chr2D 79401049 79401824 775 True 388.00 388 76.61700 1867 2639 1 chr2D.!!$R1 772
4 TraesCS2B01G147700 chr7B 15807511 15808161 650 True 330.00 403 84.96700 1690 2368 2 chr7B.!!$R1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 235 0.035056 AGCAACGAGATTGGGGGAAG 60.035 55.0 0.00 0.0 38.88 3.46 F
1164 1179 0.242017 GTGGTCTGCAGTTGGATTGC 59.758 55.0 14.67 0.0 41.86 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1963 0.106268 TCCTGCAAGAAGGCCAAACA 60.106 50.0 5.01 0.0 37.24 2.83 R
2902 3145 0.166814 GACGTGCACTGATTTCCAGC 59.833 55.0 16.19 0.0 46.81 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.836268 AAAATAACAACGATGTCAACCTAGTA 57.164 30.769 0.00 0.00 39.40 1.82
58 59 4.617253 TGTCAACCTAGTACAGCAACAT 57.383 40.909 0.00 0.00 0.00 2.71
102 105 8.383318 TCTCAAGTATAGCTAATTCAATTGCC 57.617 34.615 0.00 0.00 0.00 4.52
115 118 9.459640 CTAATTCAATTGCCTCATAAACATGAG 57.540 33.333 0.00 7.52 45.69 2.90
193 197 3.740321 CAGCAAACGCACCATGTAATTTT 59.260 39.130 0.00 0.00 0.00 1.82
194 198 4.920340 CAGCAAACGCACCATGTAATTTTA 59.080 37.500 0.00 0.00 0.00 1.52
197 201 6.310224 AGCAAACGCACCATGTAATTTTAATC 59.690 34.615 0.00 0.00 0.00 1.75
224 228 6.182039 TCCAAAGATTTAGCAACGAGATTG 57.818 37.500 0.00 0.00 41.69 2.67
229 233 1.281419 TTAGCAACGAGATTGGGGGA 58.719 50.000 0.00 0.00 38.88 4.81
231 235 0.035056 AGCAACGAGATTGGGGGAAG 60.035 55.000 0.00 0.00 38.88 3.46
235 239 3.153919 CAACGAGATTGGGGGAAGAAAA 58.846 45.455 0.00 0.00 34.34 2.29
236 240 3.739401 ACGAGATTGGGGGAAGAAAAT 57.261 42.857 0.00 0.00 0.00 1.82
237 241 3.356290 ACGAGATTGGGGGAAGAAAATG 58.644 45.455 0.00 0.00 0.00 2.32
238 242 3.010138 ACGAGATTGGGGGAAGAAAATGA 59.990 43.478 0.00 0.00 0.00 2.57
239 243 4.210331 CGAGATTGGGGGAAGAAAATGAT 58.790 43.478 0.00 0.00 0.00 2.45
624 630 2.118294 GCAGGCCCTGGAGGTTTT 59.882 61.111 13.78 0.00 38.26 2.43
627 633 3.062466 GGCCCTGGAGGTTTTCGC 61.062 66.667 0.00 0.00 38.26 4.70
629 635 2.345991 CCCTGGAGGTTTTCGCGA 59.654 61.111 3.71 3.71 0.00 5.87
755 767 1.667756 CGAATCTGAACCGTCCAACGA 60.668 52.381 0.24 0.00 46.05 3.85
756 768 2.618053 GAATCTGAACCGTCCAACGAT 58.382 47.619 0.24 0.00 46.05 3.73
831 843 0.668535 CACCGTAGATGCCAGATCGA 59.331 55.000 0.00 0.00 0.00 3.59
1097 1112 1.194781 ATCTCCGGGTGAGCACAGTT 61.195 55.000 0.00 0.00 41.18 3.16
1163 1178 1.901591 AGTGGTCTGCAGTTGGATTG 58.098 50.000 14.67 0.00 0.00 2.67
1164 1179 0.242017 GTGGTCTGCAGTTGGATTGC 59.758 55.000 14.67 0.00 41.86 3.56
1169 1184 1.630369 TCTGCAGTTGGATTGCCTAGT 59.370 47.619 14.67 0.00 40.81 2.57
1179 1194 4.469657 TGGATTGCCTAGTTTTGAACTGT 58.530 39.130 3.70 0.00 42.84 3.55
1182 1197 4.911514 TTGCCTAGTTTTGAACTGTTCC 57.088 40.909 17.26 2.55 42.84 3.62
1200 1215 4.010414 GCTCTGCGATGGCGATGC 62.010 66.667 0.00 0.00 44.10 3.91
1218 1235 2.634982 GCCTAGAGCATGAGATCTCG 57.365 55.000 17.76 5.78 40.26 4.04
1238 1255 4.421948 TCGTCTCCTTAGCTTCGAATTTC 58.578 43.478 0.00 0.00 0.00 2.17
1249 1266 2.542766 TCGAATTTCGCAAATCTGGC 57.457 45.000 13.86 0.00 40.21 4.85
1262 1279 1.755179 ATCTGGCGAACTGATTTGGG 58.245 50.000 0.00 0.00 34.50 4.12
1264 1281 1.937546 CTGGCGAACTGATTTGGGGC 61.938 60.000 0.00 0.00 0.00 5.80
1265 1282 2.485122 GCGAACTGATTTGGGGCG 59.515 61.111 0.00 0.00 0.00 6.13
1268 1285 1.883021 GAACTGATTTGGGGCGTGG 59.117 57.895 0.00 0.00 0.00 4.94
1269 1286 2.212900 GAACTGATTTGGGGCGTGGC 62.213 60.000 0.00 0.00 0.00 5.01
1271 1288 4.652131 TGATTTGGGGCGTGGCGT 62.652 61.111 0.00 0.00 0.00 5.68
1286 1303 1.804151 TGGCGTCTGTGTTTGCTTATC 59.196 47.619 0.00 0.00 0.00 1.75
1287 1304 1.201921 GGCGTCTGTGTTTGCTTATCG 60.202 52.381 0.00 0.00 0.00 2.92
1435 1452 1.725164 GCCGTTTCTTCAAGGTACGAG 59.275 52.381 12.11 5.53 34.36 4.18
1436 1453 1.725164 CCGTTTCTTCAAGGTACGAGC 59.275 52.381 12.11 0.00 34.36 5.03
1448 1473 2.094649 AGGTACGAGCTTGCTGTTCTAC 60.095 50.000 0.00 0.00 0.00 2.59
1453 1478 3.006537 ACGAGCTTGCTGTTCTACCTTAA 59.993 43.478 0.00 0.00 0.00 1.85
1466 1491 8.301252 TGTTCTACCTTAATATGCTGTCACTA 57.699 34.615 0.00 0.00 0.00 2.74
1470 1495 6.240549 ACCTTAATATGCTGTCACTAAGCT 57.759 37.500 0.00 0.00 41.42 3.74
1480 1505 3.076621 TGTCACTAAGCTTGGCAGATTG 58.923 45.455 9.86 0.00 29.24 2.67
1495 1520 3.935315 CAGATTGATCTGCCGTATGGAT 58.065 45.455 4.73 0.00 46.63 3.41
1496 1521 3.683340 CAGATTGATCTGCCGTATGGATG 59.317 47.826 4.73 0.00 46.63 3.51
1512 1537 3.266636 TGGATGGGCGTAATTATATGCG 58.733 45.455 0.00 0.00 43.64 4.73
1518 1543 3.364565 GGGCGTAATTATATGCGTGGTTG 60.365 47.826 0.00 0.00 43.64 3.77
1522 1547 5.137403 CGTAATTATATGCGTGGTTGCTTC 58.863 41.667 0.00 0.00 35.36 3.86
1525 1550 6.875948 AATTATATGCGTGGTTGCTTCATA 57.124 33.333 0.00 0.00 35.36 2.15
1526 1551 7.452880 AATTATATGCGTGGTTGCTTCATAT 57.547 32.000 0.00 0.00 35.35 1.78
1527 1552 4.754372 ATATGCGTGGTTGCTTCATATG 57.246 40.909 0.00 0.00 31.40 1.78
1530 1555 2.095314 TGCGTGGTTGCTTCATATGTTG 60.095 45.455 1.90 0.00 35.36 3.33
1531 1556 2.518949 CGTGGTTGCTTCATATGTTGC 58.481 47.619 1.90 8.89 0.00 4.17
1532 1557 2.162208 CGTGGTTGCTTCATATGTTGCT 59.838 45.455 18.14 0.00 0.00 3.91
1533 1558 3.504863 GTGGTTGCTTCATATGTTGCTG 58.495 45.455 18.14 2.95 0.00 4.41
1534 1559 3.191162 GTGGTTGCTTCATATGTTGCTGA 59.809 43.478 18.14 8.64 0.00 4.26
1535 1560 4.018490 TGGTTGCTTCATATGTTGCTGAT 58.982 39.130 18.14 0.00 0.00 2.90
1576 1602 1.222936 CTCTGGGGTGAGTGCATCC 59.777 63.158 0.00 0.00 45.04 3.51
1618 1686 0.959372 CTGCTGCTTCCAAGGTGAGG 60.959 60.000 0.00 0.00 0.00 3.86
1628 1696 0.954452 CAAGGTGAGGGTTTGAGCAC 59.046 55.000 0.00 0.00 0.00 4.40
1630 1698 0.846693 AGGTGAGGGTTTGAGCACTT 59.153 50.000 0.00 0.00 0.00 3.16
1638 1706 1.002033 GGTTTGAGCACTTGAGCTGTG 60.002 52.381 0.00 0.00 46.75 3.66
1672 1741 4.981794 CCCTTGAAGGCTTTATTGTTACG 58.018 43.478 5.50 0.00 32.73 3.18
1673 1742 4.457949 CCCTTGAAGGCTTTATTGTTACGT 59.542 41.667 5.50 0.00 32.73 3.57
1705 1865 8.654997 ACTTCTATAGTGGATGCTTCACATTAT 58.345 33.333 0.00 6.63 35.69 1.28
1724 1886 9.910511 CACATTATAATGAATTTTTGCAGAAGC 57.089 29.630 28.13 0.00 39.67 3.86
1749 1911 7.041780 GCACTATCCCAGTTACATTTATGTCAG 60.042 40.741 0.00 0.00 37.54 3.51
1757 1919 7.394099 CAGTTACATTTATGTCAGTCGTCATG 58.606 38.462 0.00 0.00 41.97 3.07
1760 1922 5.674525 ACATTTATGTCAGTCGTCATGGAT 58.325 37.500 0.00 0.00 35.87 3.41
1763 1925 2.947448 TGTCAGTCGTCATGGATCTG 57.053 50.000 0.00 0.00 0.00 2.90
1777 1940 6.587608 GTCATGGATCTGTTTTGGATTCAAAC 59.412 38.462 0.00 0.00 41.97 2.93
1832 1995 4.449131 TCTTGCAGGATGAAGATGATGAC 58.551 43.478 0.00 0.00 39.69 3.06
1954 2162 7.544566 GCTCTACTAGTGTTGTGTGCTTAATTA 59.455 37.037 5.39 0.00 0.00 1.40
1955 2163 8.752766 TCTACTAGTGTTGTGTGCTTAATTAC 57.247 34.615 5.39 0.00 0.00 1.89
1958 2166 7.673180 ACTAGTGTTGTGTGCTTAATTACCTA 58.327 34.615 0.00 0.00 0.00 3.08
1965 2173 7.470935 TGTGTGCTTAATTACCTACTGACTA 57.529 36.000 0.00 0.00 0.00 2.59
1969 2177 8.900781 TGTGCTTAATTACCTACTGACTACTAG 58.099 37.037 0.00 0.00 0.00 2.57
1974 2182 7.916077 AATTACCTACTGACTACTAGGCAAT 57.084 36.000 0.00 0.00 29.23 3.56
1986 2194 1.802960 CTAGGCAATTATCCTGCAGCG 59.197 52.381 8.66 1.56 41.78 5.18
2012 2220 6.914259 TCATCTAGTCTGGCTTATATTGTCG 58.086 40.000 0.00 0.00 0.00 4.35
2036 2261 2.884639 GTCCAGTTTGTGCTAACACCAT 59.115 45.455 0.00 0.00 46.86 3.55
2040 2266 2.554032 AGTTTGTGCTAACACCATGCTC 59.446 45.455 0.00 0.00 46.86 4.26
2175 2401 4.523083 GGGTGCATGTAAGGAACTCATTA 58.477 43.478 0.00 0.00 38.49 1.90
2226 2455 3.096541 CTGATGCAACAGTTTGGCG 57.903 52.632 15.39 0.00 32.81 5.69
2232 2461 1.199624 GCAACAGTTTGGCGAAGTTG 58.800 50.000 12.81 12.81 41.71 3.16
2237 2466 1.021968 AGTTTGGCGAAGTTGACACC 58.978 50.000 0.00 0.00 0.00 4.16
2431 2669 8.244494 TCAACAAGATCTAGAATCTTTGTTCG 57.756 34.615 17.24 14.28 36.32 3.95
2437 2675 1.534729 AGAATCTTTGTTCGCCCACC 58.465 50.000 0.00 0.00 33.36 4.61
2471 2709 4.569865 GGATTCTTGGTACTGGGATTGGTT 60.570 45.833 0.00 0.00 0.00 3.67
2563 2804 0.743097 GATGCCCTGGTCTTGAATGC 59.257 55.000 0.00 0.00 0.00 3.56
2586 2827 6.889722 TGCCTGCTACCTTTAAATAGTTGAAT 59.110 34.615 0.00 0.00 0.00 2.57
2681 2922 7.201679 GGATGATCCAGATGTTCTTGTTTACAG 60.202 40.741 6.60 0.00 36.28 2.74
2709 2952 2.288091 CCATATCTGAGCTGTGACTCGG 60.288 54.545 0.00 0.00 43.29 4.63
2715 2958 0.455295 GAGCTGTGACTCGGAACTCG 60.455 60.000 0.00 0.00 40.90 4.18
2753 2996 1.840737 AAGAAGCTCTCGTGCCTAGA 58.159 50.000 0.00 0.00 0.00 2.43
2762 3005 0.675837 TCGTGCCTAGAGCTGTACGT 60.676 55.000 11.12 0.00 44.23 3.57
2773 3016 3.612860 AGAGCTGTACGTTTGCTTAATCG 59.387 43.478 10.18 0.00 37.16 3.34
2783 3026 9.105206 GTACGTTTGCTTAATCGTTTCAATTTA 57.895 29.630 0.00 0.00 37.66 1.40
2785 3028 8.635124 ACGTTTGCTTAATCGTTTCAATTTATG 58.365 29.630 0.00 0.00 32.62 1.90
2788 3031 8.682128 TTGCTTAATCGTTTCAATTTATGGAC 57.318 30.769 0.00 0.00 0.00 4.02
2789 3032 8.050778 TGCTTAATCGTTTCAATTTATGGACT 57.949 30.769 0.00 0.00 0.00 3.85
2790 3033 8.519526 TGCTTAATCGTTTCAATTTATGGACTT 58.480 29.630 0.00 0.00 0.00 3.01
2791 3034 9.997482 GCTTAATCGTTTCAATTTATGGACTTA 57.003 29.630 0.00 0.00 0.00 2.24
2802 3045 2.918712 ATGGACTTAGGAGGATTGCG 57.081 50.000 0.00 0.00 0.00 4.85
2819 3062 2.394604 CGCAGCCTTAAGCCCTTAC 58.605 57.895 0.00 0.00 45.47 2.34
2851 3094 2.424793 TCCCTAAAGGAACTGGGTGTT 58.575 47.619 0.00 0.00 43.78 3.32
2859 3102 2.627771 AACTGGGTGTTCAGGTGGA 58.372 52.632 0.00 0.00 38.98 4.02
2861 3104 2.038863 ACTGGGTGTTCAGGTGGATA 57.961 50.000 0.00 0.00 38.98 2.59
2862 3105 2.344592 ACTGGGTGTTCAGGTGGATAA 58.655 47.619 0.00 0.00 38.98 1.75
2863 3106 2.305927 ACTGGGTGTTCAGGTGGATAAG 59.694 50.000 0.00 0.00 38.98 1.73
2864 3107 2.571653 CTGGGTGTTCAGGTGGATAAGA 59.428 50.000 0.00 0.00 0.00 2.10
2868 3111 5.123936 GGGTGTTCAGGTGGATAAGATAAC 58.876 45.833 0.00 0.00 0.00 1.89
2869 3112 5.104485 GGGTGTTCAGGTGGATAAGATAACT 60.104 44.000 0.00 0.00 0.00 2.24
2870 3113 5.817816 GGTGTTCAGGTGGATAAGATAACTG 59.182 44.000 0.00 0.00 0.00 3.16
2871 3114 6.351881 GGTGTTCAGGTGGATAAGATAACTGA 60.352 42.308 0.00 0.00 0.00 3.41
2873 3116 7.278868 GTGTTCAGGTGGATAAGATAACTGAAG 59.721 40.741 4.36 0.00 42.14 3.02
2874 3117 7.038302 TGTTCAGGTGGATAAGATAACTGAAGT 60.038 37.037 4.36 0.00 42.14 3.01
2875 3118 6.878317 TCAGGTGGATAAGATAACTGAAGTG 58.122 40.000 0.00 0.00 31.30 3.16
2876 3119 6.440647 TCAGGTGGATAAGATAACTGAAGTGT 59.559 38.462 0.00 0.00 31.30 3.55
2878 3121 7.065085 CAGGTGGATAAGATAACTGAAGTGTTG 59.935 40.741 0.00 0.00 0.00 3.33
2879 3122 6.183360 GGTGGATAAGATAACTGAAGTGTTGC 60.183 42.308 0.00 0.00 0.00 4.17
2880 3123 6.595716 GTGGATAAGATAACTGAAGTGTTGCT 59.404 38.462 0.00 0.00 0.00 3.91
2882 3125 7.665559 TGGATAAGATAACTGAAGTGTTGCTTT 59.334 33.333 0.00 0.00 37.59 3.51
2883 3126 7.965107 GGATAAGATAACTGAAGTGTTGCTTTG 59.035 37.037 0.00 0.00 37.59 2.77
2884 3127 6.942532 AAGATAACTGAAGTGTTGCTTTGA 57.057 33.333 0.00 0.00 37.59 2.69
2885 3128 6.551385 AGATAACTGAAGTGTTGCTTTGAG 57.449 37.500 0.00 0.00 37.59 3.02
2886 3129 6.291377 AGATAACTGAAGTGTTGCTTTGAGA 58.709 36.000 0.00 0.00 37.59 3.27
2888 3131 4.889832 ACTGAAGTGTTGCTTTGAGAAG 57.110 40.909 0.00 0.00 37.59 2.85
2899 3142 3.555917 CTTTGAGAAGCAAGAAGGCAG 57.444 47.619 0.00 0.00 37.87 4.85
2900 3143 1.901591 TTGAGAAGCAAGAAGGCAGG 58.098 50.000 0.00 0.00 35.83 4.85
2901 3144 0.607489 TGAGAAGCAAGAAGGCAGGC 60.607 55.000 0.00 0.00 35.83 4.85
2902 3145 1.642952 GAGAAGCAAGAAGGCAGGCG 61.643 60.000 0.00 0.00 35.83 5.52
2903 3146 3.333898 GAAGCAAGAAGGCAGGCGC 62.334 63.158 0.00 0.00 35.83 6.53
2904 3147 3.857309 AAGCAAGAAGGCAGGCGCT 62.857 57.895 7.64 0.00 38.60 5.92
2905 3148 4.112341 GCAAGAAGGCAGGCGCTG 62.112 66.667 7.64 4.78 38.60 5.18
2906 3149 3.437795 CAAGAAGGCAGGCGCTGG 61.438 66.667 7.64 0.00 38.60 4.85
2907 3150 3.640407 AAGAAGGCAGGCGCTGGA 61.640 61.111 7.64 0.00 38.60 3.86
2908 3151 3.196207 AAGAAGGCAGGCGCTGGAA 62.196 57.895 7.64 0.00 38.60 3.53
2909 3152 2.672996 GAAGGCAGGCGCTGGAAA 60.673 61.111 7.64 0.00 38.60 3.13
2910 3153 2.036256 AAGGCAGGCGCTGGAAAT 59.964 55.556 7.64 0.00 38.60 2.17
2911 3154 1.997928 GAAGGCAGGCGCTGGAAATC 61.998 60.000 7.64 0.00 38.60 2.17
2912 3155 2.751436 GGCAGGCGCTGGAAATCA 60.751 61.111 7.64 0.00 38.60 2.57
2913 3156 2.768492 GGCAGGCGCTGGAAATCAG 61.768 63.158 7.64 0.00 46.03 2.90
2919 3162 1.133253 CGCTGGAAATCAGTGCACG 59.867 57.895 12.01 6.78 45.52 5.34
2920 3163 1.568612 CGCTGGAAATCAGTGCACGT 61.569 55.000 12.01 0.00 45.52 4.49
2921 3164 0.166814 GCTGGAAATCAGTGCACGTC 59.833 55.000 12.01 5.19 45.08 4.34
2922 3165 0.798776 CTGGAAATCAGTGCACGTCC 59.201 55.000 12.01 14.13 38.64 4.79
2923 3166 0.396435 TGGAAATCAGTGCACGTCCT 59.604 50.000 12.01 0.00 0.00 3.85
2924 3167 1.202758 TGGAAATCAGTGCACGTCCTT 60.203 47.619 12.01 4.07 0.00 3.36
2925 3168 1.464997 GGAAATCAGTGCACGTCCTTC 59.535 52.381 12.01 12.77 0.00 3.46
2927 3170 1.512926 AATCAGTGCACGTCCTTCAC 58.487 50.000 12.01 0.00 0.00 3.18
2928 3171 0.392706 ATCAGTGCACGTCCTTCACA 59.607 50.000 12.01 0.00 33.44 3.58
2929 3172 0.176910 TCAGTGCACGTCCTTCACAA 59.823 50.000 12.01 0.00 33.44 3.33
2931 3174 1.195448 CAGTGCACGTCCTTCACAATC 59.805 52.381 12.01 0.00 33.44 2.67
2932 3175 1.202639 AGTGCACGTCCTTCACAATCA 60.203 47.619 12.01 0.00 33.44 2.57
2933 3176 1.806542 GTGCACGTCCTTCACAATCAT 59.193 47.619 0.00 0.00 0.00 2.45
2934 3177 1.805943 TGCACGTCCTTCACAATCATG 59.194 47.619 0.00 0.00 0.00 3.07
2935 3178 1.131126 GCACGTCCTTCACAATCATGG 59.869 52.381 0.00 0.00 0.00 3.66
2936 3179 1.739466 CACGTCCTTCACAATCATGGG 59.261 52.381 0.00 0.00 0.00 4.00
2938 3181 2.569853 ACGTCCTTCACAATCATGGGTA 59.430 45.455 0.00 0.00 0.00 3.69
2939 3182 3.008594 ACGTCCTTCACAATCATGGGTAA 59.991 43.478 0.00 0.00 0.00 2.85
2940 3183 3.623060 CGTCCTTCACAATCATGGGTAAG 59.377 47.826 0.00 0.00 0.00 2.34
2941 3184 3.378427 GTCCTTCACAATCATGGGTAAGC 59.622 47.826 0.00 0.00 0.00 3.09
2943 3186 3.956199 CCTTCACAATCATGGGTAAGCAT 59.044 43.478 0.00 0.00 0.00 3.79
2944 3187 4.202080 CCTTCACAATCATGGGTAAGCATG 60.202 45.833 0.00 0.00 0.00 4.06
2945 3188 3.966979 TCACAATCATGGGTAAGCATGT 58.033 40.909 0.00 0.00 0.00 3.21
2947 3190 3.695556 CACAATCATGGGTAAGCATGTCA 59.304 43.478 0.00 0.00 0.00 3.58
2949 3192 4.957954 ACAATCATGGGTAAGCATGTCATT 59.042 37.500 0.00 0.00 0.00 2.57
2950 3193 5.422970 ACAATCATGGGTAAGCATGTCATTT 59.577 36.000 0.00 0.00 0.00 2.32
2951 3194 6.070653 ACAATCATGGGTAAGCATGTCATTTT 60.071 34.615 0.00 0.00 0.00 1.82
2952 3195 5.327616 TCATGGGTAAGCATGTCATTTTG 57.672 39.130 0.00 0.00 0.00 2.44
2953 3196 5.015515 TCATGGGTAAGCATGTCATTTTGA 58.984 37.500 0.00 0.00 0.00 2.69
2966 3209 5.940192 GTCATTTTGACACATGTCTACCA 57.060 39.130 12.98 0.00 46.22 3.25
2967 3210 6.312399 GTCATTTTGACACATGTCTACCAA 57.688 37.500 12.98 0.00 46.22 3.67
2968 3211 6.913170 GTCATTTTGACACATGTCTACCAAT 58.087 36.000 12.98 1.52 46.22 3.16
2969 3212 7.370383 GTCATTTTGACACATGTCTACCAATT 58.630 34.615 12.98 0.00 46.22 2.32
2970 3213 8.511321 GTCATTTTGACACATGTCTACCAATTA 58.489 33.333 12.98 0.00 46.22 1.40
2971 3214 9.072375 TCATTTTGACACATGTCTACCAATTAA 57.928 29.630 12.98 0.00 44.99 1.40
2972 3215 9.689976 CATTTTGACACATGTCTACCAATTAAA 57.310 29.630 12.98 0.65 44.99 1.52
2973 3216 9.691362 ATTTTGACACATGTCTACCAATTAAAC 57.309 29.630 12.98 0.00 44.99 2.01
2974 3217 8.458573 TTTGACACATGTCTACCAATTAAACT 57.541 30.769 12.98 0.00 44.99 2.66
2975 3218 8.458573 TTGACACATGTCTACCAATTAAACTT 57.541 30.769 12.98 0.00 44.99 2.66
2976 3219 7.870826 TGACACATGTCTACCAATTAAACTTG 58.129 34.615 12.98 0.00 44.99 3.16
2977 3220 6.677913 ACACATGTCTACCAATTAAACTTGC 58.322 36.000 0.00 0.00 0.00 4.01
2979 3222 5.772672 ACATGTCTACCAATTAAACTTGCCA 59.227 36.000 0.00 0.00 0.00 4.92
2981 3224 4.521256 TGTCTACCAATTAAACTTGCCACC 59.479 41.667 0.00 0.00 0.00 4.61
2983 3226 5.007682 TCTACCAATTAAACTTGCCACCTC 58.992 41.667 0.00 0.00 0.00 3.85
2986 3726 3.564511 CAATTAAACTTGCCACCTCGTG 58.435 45.455 0.00 0.00 0.00 4.35
2991 3731 0.814010 ACTTGCCACCTCGTGTCAAC 60.814 55.000 0.00 0.00 28.57 3.18
2992 3732 0.532862 CTTGCCACCTCGTGTCAACT 60.533 55.000 0.00 0.00 28.57 3.16
2993 3733 0.813610 TTGCCACCTCGTGTCAACTG 60.814 55.000 0.00 0.00 26.31 3.16
2995 3735 0.531974 GCCACCTCGTGTCAACTGAA 60.532 55.000 0.00 0.00 0.00 3.02
2996 3736 1.502231 CCACCTCGTGTCAACTGAAG 58.498 55.000 0.00 0.00 0.00 3.02
2998 3738 2.550978 CACCTCGTGTCAACTGAAGTT 58.449 47.619 0.00 0.00 39.12 2.66
3008 3748 1.985473 AACTGAAGTTGCCATGCTCA 58.015 45.000 0.00 0.00 36.80 4.26
3009 3749 1.985473 ACTGAAGTTGCCATGCTCAA 58.015 45.000 0.00 0.00 0.00 3.02
3010 3750 2.309613 ACTGAAGTTGCCATGCTCAAA 58.690 42.857 0.99 0.00 0.00 2.69
3011 3751 2.694628 ACTGAAGTTGCCATGCTCAAAA 59.305 40.909 0.99 0.00 0.00 2.44
3015 3755 1.203052 AGTTGCCATGCTCAAAATCCG 59.797 47.619 0.99 0.00 0.00 4.18
3016 3756 1.202114 GTTGCCATGCTCAAAATCCGA 59.798 47.619 0.99 0.00 0.00 4.55
3039 3779 0.744281 AAAAACCACTTGCCACCTCG 59.256 50.000 0.00 0.00 0.00 4.63
3040 3780 0.395173 AAAACCACTTGCCACCTCGT 60.395 50.000 0.00 0.00 0.00 4.18
3041 3781 1.101049 AAACCACTTGCCACCTCGTG 61.101 55.000 0.00 0.00 0.00 4.35
3042 3782 2.111043 CCACTTGCCACCTCGTGT 59.889 61.111 0.00 0.00 0.00 4.49
3046 3786 0.814010 ACTTGCCACCTCGTGTCAAC 60.814 55.000 0.00 0.00 28.57 3.18
3081 3821 3.518634 AAAACGTTTGAGTTGCCATGT 57.481 38.095 15.46 0.00 34.14 3.21
3082 3822 3.518634 AAACGTTTGAGTTGCCATGTT 57.481 38.095 13.81 0.00 34.14 2.71
3090 3830 6.420604 CGTTTGAGTTGCCATGTTTAAAATCT 59.579 34.615 0.00 0.00 0.00 2.40
3134 3875 1.024579 CGGTTCCTTCAATGGTCGGG 61.025 60.000 0.00 0.00 0.00 5.14
3163 3904 5.800296 TGCATCTACTTTTAGTTAGTGCCA 58.200 37.500 0.00 0.00 0.00 4.92
3164 3905 5.874810 TGCATCTACTTTTAGTTAGTGCCAG 59.125 40.000 0.00 0.00 0.00 4.85
3165 3906 6.106673 GCATCTACTTTTAGTTAGTGCCAGA 58.893 40.000 0.00 0.00 0.00 3.86
3166 3907 6.036191 GCATCTACTTTTAGTTAGTGCCAGAC 59.964 42.308 0.00 0.00 0.00 3.51
3167 3908 6.659745 TCTACTTTTAGTTAGTGCCAGACA 57.340 37.500 0.00 0.00 0.00 3.41
3176 3917 4.377370 TGCCAGACACAATGGTCG 57.623 55.556 0.00 0.00 42.62 4.79
3177 3918 1.302431 TGCCAGACACAATGGTCGG 60.302 57.895 0.00 0.00 42.62 4.79
3178 3919 4.301505 CCAGACACAATGGTCGGG 57.698 61.111 6.64 6.64 44.59 5.14
3179 3920 1.377202 CCAGACACAATGGTCGGGG 60.377 63.158 11.14 7.00 45.71 5.73
3180 3921 1.374947 CAGACACAATGGTCGGGGT 59.625 57.895 0.00 0.00 42.62 4.95
3181 3922 0.611200 CAGACACAATGGTCGGGGTA 59.389 55.000 0.00 0.00 42.62 3.69
3182 3923 0.611714 AGACACAATGGTCGGGGTAC 59.388 55.000 0.00 0.00 42.62 3.34
3183 3924 0.611714 GACACAATGGTCGGGGTACT 59.388 55.000 0.00 0.00 0.00 2.73
3184 3925 0.611714 ACACAATGGTCGGGGTACTC 59.388 55.000 0.00 0.00 0.00 2.59
3185 3926 0.902531 CACAATGGTCGGGGTACTCT 59.097 55.000 0.00 0.00 0.00 3.24
3186 3927 0.902531 ACAATGGTCGGGGTACTCTG 59.097 55.000 0.00 0.00 0.00 3.35
3187 3928 0.462047 CAATGGTCGGGGTACTCTGC 60.462 60.000 0.00 0.00 0.00 4.26
3188 3929 0.907704 AATGGTCGGGGTACTCTGCA 60.908 55.000 0.00 0.00 0.00 4.41
3189 3930 0.691078 ATGGTCGGGGTACTCTGCAT 60.691 55.000 0.00 0.00 0.00 3.96
3190 3931 1.327690 TGGTCGGGGTACTCTGCATC 61.328 60.000 0.00 0.00 0.00 3.91
3191 3932 1.043673 GGTCGGGGTACTCTGCATCT 61.044 60.000 0.00 0.00 0.00 2.90
3192 3933 1.688772 GTCGGGGTACTCTGCATCTA 58.311 55.000 0.00 0.00 0.00 1.98
3193 3934 1.337387 GTCGGGGTACTCTGCATCTAC 59.663 57.143 0.00 0.00 0.00 2.59
3194 3935 1.214673 TCGGGGTACTCTGCATCTACT 59.785 52.381 0.00 0.00 0.00 2.57
3195 3936 2.032620 CGGGGTACTCTGCATCTACTT 58.967 52.381 0.00 0.00 0.00 2.24
3196 3937 2.431057 CGGGGTACTCTGCATCTACTTT 59.569 50.000 0.00 0.00 0.00 2.66
3197 3938 3.118738 CGGGGTACTCTGCATCTACTTTT 60.119 47.826 0.00 0.00 0.00 2.27
3198 3939 4.098960 CGGGGTACTCTGCATCTACTTTTA 59.901 45.833 0.00 0.00 0.00 1.52
3199 3940 5.602628 GGGGTACTCTGCATCTACTTTTAG 58.397 45.833 0.00 0.00 0.00 1.85
3200 3941 5.128991 GGGGTACTCTGCATCTACTTTTAGT 59.871 44.000 0.00 0.00 0.00 2.24
3201 3942 6.351966 GGGGTACTCTGCATCTACTTTTAGTT 60.352 42.308 0.00 0.00 0.00 2.24
3202 3943 7.147776 GGGGTACTCTGCATCTACTTTTAGTTA 60.148 40.741 0.00 0.00 0.00 2.24
3203 3944 7.921745 GGGTACTCTGCATCTACTTTTAGTTAG 59.078 40.741 0.00 0.00 0.00 2.34
3204 3945 8.468399 GGTACTCTGCATCTACTTTTAGTTAGT 58.532 37.037 0.00 0.00 0.00 2.24
3205 3946 9.291664 GTACTCTGCATCTACTTTTAGTTAGTG 57.708 37.037 0.00 0.00 0.00 2.74
3206 3947 6.814146 ACTCTGCATCTACTTTTAGTTAGTGC 59.186 38.462 0.00 0.00 0.00 4.40
3207 3948 6.106673 TCTGCATCTACTTTTAGTTAGTGCC 58.893 40.000 0.00 0.00 0.00 5.01
3208 3949 5.800296 TGCATCTACTTTTAGTTAGTGCCA 58.200 37.500 0.00 0.00 0.00 4.92
3241 3982 6.405278 AATCACGATTTCTTTTTGGTTCCT 57.595 33.333 0.00 0.00 0.00 3.36
3249 3990 4.335400 TCTTTTTGGTTCCTTCAATGGC 57.665 40.909 0.00 0.00 0.00 4.40
3342 4083 9.046296 CATGATACTAACAAATCCCACTTCTAC 57.954 37.037 0.00 0.00 0.00 2.59
3356 4097 2.820197 ACTTCTACAGTGCGTCTGATCA 59.180 45.455 14.20 0.00 46.27 2.92
3359 4100 1.133982 CTACAGTGCGTCTGATCAGCT 59.866 52.381 18.36 5.92 46.27 4.24
3360 4101 1.177401 ACAGTGCGTCTGATCAGCTA 58.823 50.000 18.36 0.00 46.27 3.32
3361 4102 1.753649 ACAGTGCGTCTGATCAGCTAT 59.246 47.619 18.36 0.00 46.27 2.97
3362 4103 2.125685 CAGTGCGTCTGATCAGCTATG 58.874 52.381 18.36 8.45 46.27 2.23
3363 4104 2.027385 AGTGCGTCTGATCAGCTATGA 58.973 47.619 18.36 0.00 40.50 2.15
3364 4105 2.123342 GTGCGTCTGATCAGCTATGAC 58.877 52.381 18.36 9.69 38.57 3.06
3365 4106 1.750778 TGCGTCTGATCAGCTATGACA 59.249 47.619 18.36 7.15 38.57 3.58
3366 4107 2.166254 TGCGTCTGATCAGCTATGACAA 59.834 45.455 18.36 0.00 38.57 3.18
3367 4108 3.181472 TGCGTCTGATCAGCTATGACAAT 60.181 43.478 18.36 0.00 38.57 2.71
3368 4109 3.806521 GCGTCTGATCAGCTATGACAATT 59.193 43.478 18.36 0.00 38.57 2.32
3369 4110 4.272018 GCGTCTGATCAGCTATGACAATTT 59.728 41.667 18.36 0.00 38.57 1.82
3370 4111 5.220739 GCGTCTGATCAGCTATGACAATTTT 60.221 40.000 18.36 0.00 38.57 1.82
3371 4112 6.190264 CGTCTGATCAGCTATGACAATTTTG 58.810 40.000 18.36 0.00 38.57 2.44
3372 4113 5.970023 GTCTGATCAGCTATGACAATTTTGC 59.030 40.000 18.36 0.00 38.57 3.68
3373 4114 5.648960 TCTGATCAGCTATGACAATTTTGCA 59.351 36.000 18.36 0.00 38.57 4.08
3374 4115 5.886992 TGATCAGCTATGACAATTTTGCAG 58.113 37.500 0.00 0.00 38.57 4.41
3375 4116 5.648960 TGATCAGCTATGACAATTTTGCAGA 59.351 36.000 0.00 0.00 38.57 4.26
3376 4117 5.963176 TCAGCTATGACAATTTTGCAGAA 57.037 34.783 0.00 0.00 0.00 3.02
3377 4118 5.946298 TCAGCTATGACAATTTTGCAGAAG 58.054 37.500 0.00 0.00 0.00 2.85
3378 4119 5.706833 TCAGCTATGACAATTTTGCAGAAGA 59.293 36.000 0.00 0.00 0.00 2.87
3379 4120 5.798934 CAGCTATGACAATTTTGCAGAAGAC 59.201 40.000 0.00 0.00 0.00 3.01
3380 4121 5.709164 AGCTATGACAATTTTGCAGAAGACT 59.291 36.000 0.00 0.00 0.00 3.24
3381 4122 6.026513 GCTATGACAATTTTGCAGAAGACTC 58.973 40.000 0.00 0.00 0.00 3.36
3382 4123 4.836125 TGACAATTTTGCAGAAGACTCC 57.164 40.909 0.00 0.00 0.00 3.85
3383 4124 4.206375 TGACAATTTTGCAGAAGACTCCA 58.794 39.130 0.00 0.00 0.00 3.86
3384 4125 4.828939 TGACAATTTTGCAGAAGACTCCAT 59.171 37.500 0.00 0.00 0.00 3.41
3385 4126 5.302568 TGACAATTTTGCAGAAGACTCCATT 59.697 36.000 0.00 0.00 0.00 3.16
3386 4127 6.165700 ACAATTTTGCAGAAGACTCCATTT 57.834 33.333 0.00 0.00 0.00 2.32
3387 4128 6.585416 ACAATTTTGCAGAAGACTCCATTTT 58.415 32.000 0.00 0.00 0.00 1.82
3388 4129 6.480981 ACAATTTTGCAGAAGACTCCATTTTG 59.519 34.615 0.00 0.00 0.00 2.44
3389 4130 3.648339 TTGCAGAAGACTCCATTTTGC 57.352 42.857 0.00 0.00 0.00 3.68
3390 4131 2.867624 TGCAGAAGACTCCATTTTGCT 58.132 42.857 3.38 0.00 0.00 3.91
3391 4132 2.816087 TGCAGAAGACTCCATTTTGCTC 59.184 45.455 3.38 0.00 0.00 4.26
3392 4133 3.080319 GCAGAAGACTCCATTTTGCTCT 58.920 45.455 0.00 0.00 0.00 4.09
3393 4134 3.505293 GCAGAAGACTCCATTTTGCTCTT 59.495 43.478 0.00 0.00 0.00 2.85
3394 4135 4.022503 GCAGAAGACTCCATTTTGCTCTTT 60.023 41.667 0.00 0.00 0.00 2.52
3395 4136 5.182001 GCAGAAGACTCCATTTTGCTCTTTA 59.818 40.000 0.00 0.00 0.00 1.85
3396 4137 6.622462 GCAGAAGACTCCATTTTGCTCTTTAG 60.622 42.308 0.00 0.00 0.00 1.85
3397 4138 6.652481 CAGAAGACTCCATTTTGCTCTTTAGA 59.348 38.462 0.00 0.00 0.00 2.10
3398 4139 6.652900 AGAAGACTCCATTTTGCTCTTTAGAC 59.347 38.462 0.00 0.00 0.00 2.59
3399 4140 5.249420 AGACTCCATTTTGCTCTTTAGACC 58.751 41.667 0.00 0.00 0.00 3.85
3400 4141 4.985538 ACTCCATTTTGCTCTTTAGACCA 58.014 39.130 0.00 0.00 0.00 4.02
3401 4142 5.006386 ACTCCATTTTGCTCTTTAGACCAG 58.994 41.667 0.00 0.00 0.00 4.00
3402 4143 3.758554 TCCATTTTGCTCTTTAGACCAGC 59.241 43.478 0.00 0.00 0.00 4.85
3403 4144 3.119352 CCATTTTGCTCTTTAGACCAGCC 60.119 47.826 0.00 0.00 31.68 4.85
3404 4145 2.949177 TTTGCTCTTTAGACCAGCCA 57.051 45.000 0.00 0.00 31.68 4.75
3405 4146 2.949177 TTGCTCTTTAGACCAGCCAA 57.051 45.000 0.00 0.00 31.68 4.52
3406 4147 3.439857 TTGCTCTTTAGACCAGCCAAT 57.560 42.857 0.00 0.00 31.68 3.16
3407 4148 2.991250 TGCTCTTTAGACCAGCCAATC 58.009 47.619 0.00 0.00 31.68 2.67
3408 4149 2.293170 GCTCTTTAGACCAGCCAATCC 58.707 52.381 0.00 0.00 0.00 3.01
3409 4150 2.092699 GCTCTTTAGACCAGCCAATCCT 60.093 50.000 0.00 0.00 0.00 3.24
3410 4151 3.802866 CTCTTTAGACCAGCCAATCCTC 58.197 50.000 0.00 0.00 0.00 3.71
3411 4152 2.505819 TCTTTAGACCAGCCAATCCTCC 59.494 50.000 0.00 0.00 0.00 4.30
3412 4153 1.213296 TTAGACCAGCCAATCCTCCC 58.787 55.000 0.00 0.00 0.00 4.30
3413 4154 0.343372 TAGACCAGCCAATCCTCCCT 59.657 55.000 0.00 0.00 0.00 4.20
3414 4155 0.985490 AGACCAGCCAATCCTCCCTC 60.985 60.000 0.00 0.00 0.00 4.30
3415 4156 1.988982 GACCAGCCAATCCTCCCTCC 61.989 65.000 0.00 0.00 0.00 4.30
3416 4157 2.761465 CCAGCCAATCCTCCCTCCC 61.761 68.421 0.00 0.00 0.00 4.30
3417 4158 2.002977 CAGCCAATCCTCCCTCCCA 61.003 63.158 0.00 0.00 0.00 4.37
3418 4159 2.003548 AGCCAATCCTCCCTCCCAC 61.004 63.158 0.00 0.00 0.00 4.61
3419 4160 3.061905 GCCAATCCTCCCTCCCACC 62.062 68.421 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.125316 GCATGTTGCTGTACTAGGTTGAC 59.875 47.826 0.00 0.00 40.96 3.18
49 50 2.552802 GCTCTCTGCATGTTGCTGT 58.447 52.632 0.75 0.00 45.31 4.40
65 66 7.108847 AGCTATACTTGAGAAACTGAAATGCT 58.891 34.615 0.00 0.00 0.00 3.79
66 67 7.313951 AGCTATACTTGAGAAACTGAAATGC 57.686 36.000 0.00 0.00 0.00 3.56
109 112 4.656112 CCTAGGGAGTAACCATTCTCATGT 59.344 45.833 0.00 0.00 41.20 3.21
115 118 5.367060 AGAATCACCTAGGGAGTAACCATTC 59.633 44.000 14.81 9.54 41.20 2.67
120 124 7.289310 AGTACTAGAATCACCTAGGGAGTAAC 58.711 42.308 14.81 0.00 40.24 2.50
122 126 7.128418 TGAAGTACTAGAATCACCTAGGGAGTA 59.872 40.741 14.81 5.98 40.24 2.59
193 197 6.183360 CGTTGCTAAATCTTTGGAGCAGATTA 60.183 38.462 0.00 0.00 45.14 1.75
194 198 5.392380 CGTTGCTAAATCTTTGGAGCAGATT 60.392 40.000 0.00 0.00 45.14 2.40
197 201 3.436704 TCGTTGCTAAATCTTTGGAGCAG 59.563 43.478 0.00 0.00 45.14 4.24
211 215 1.209504 CTTCCCCCAATCTCGTTGCTA 59.790 52.381 0.00 0.00 36.46 3.49
213 217 0.035439 TCTTCCCCCAATCTCGTTGC 60.035 55.000 0.00 0.00 36.46 4.17
224 228 3.696548 GTCAGTGATCATTTTCTTCCCCC 59.303 47.826 0.00 0.00 0.00 5.40
229 233 4.699257 GCTGAGGTCAGTGATCATTTTCTT 59.301 41.667 6.10 0.00 45.45 2.52
231 235 4.612932 GCTGAGGTCAGTGATCATTTTC 57.387 45.455 6.10 0.00 45.45 2.29
496 502 3.462678 GTGGAGGCGGAGGAGACC 61.463 72.222 0.00 0.00 0.00 3.85
627 633 2.456119 GCATTCCACTCGCTGGTCG 61.456 63.158 0.00 0.00 41.52 4.79
629 635 2.045926 GGCATTCCACTCGCTGGT 60.046 61.111 0.00 0.00 41.52 4.00
689 701 1.970352 CTCCTTGCTCAGCTCCCTCC 61.970 65.000 0.00 0.00 0.00 4.30
755 767 1.590610 CGCTCGATCGGATCTCCCAT 61.591 60.000 16.41 0.00 34.14 4.00
756 768 2.261586 CGCTCGATCGGATCTCCCA 61.262 63.158 16.41 0.00 34.14 4.37
785 797 0.543410 TCCCTGGGAAAGCTACACGA 60.543 55.000 14.48 0.00 0.00 4.35
867 879 2.289565 GCCGCCTATTTATATCTGGCC 58.710 52.381 0.00 0.00 40.40 5.36
1097 1112 1.035932 GCGAGTGAGTAGGGTAGGCA 61.036 60.000 0.00 0.00 0.00 4.75
1163 1178 2.350484 GCGGAACAGTTCAAAACTAGGC 60.350 50.000 15.36 1.81 40.46 3.93
1164 1179 3.139077 AGCGGAACAGTTCAAAACTAGG 58.861 45.455 15.36 0.00 40.46 3.02
1169 1184 1.333619 GCAGAGCGGAACAGTTCAAAA 59.666 47.619 15.36 0.00 0.00 2.44
1198 1213 6.803787 AGACGAGATCTCATGCTCTAGGCA 62.804 50.000 22.31 8.12 45.07 4.75
1199 1214 1.885887 ACGAGATCTCATGCTCTAGGC 59.114 52.381 22.31 0.00 42.22 3.93
1200 1215 3.411446 AGACGAGATCTCATGCTCTAGG 58.589 50.000 22.31 5.34 28.16 3.02
1218 1235 3.000423 GCGAAATTCGAAGCTAAGGAGAC 60.000 47.826 20.38 0.00 43.74 3.36
1228 1245 2.848302 GCCAGATTTGCGAAATTCGAAG 59.152 45.455 20.38 0.00 43.74 3.79
1249 1266 1.501741 CACGCCCCAAATCAGTTCG 59.498 57.895 0.00 0.00 0.00 3.95
1252 1269 2.676471 GCCACGCCCCAAATCAGT 60.676 61.111 0.00 0.00 0.00 3.41
1253 1270 3.814268 CGCCACGCCCCAAATCAG 61.814 66.667 0.00 0.00 0.00 2.90
1255 1272 3.810896 GACGCCACGCCCCAAATC 61.811 66.667 0.00 0.00 0.00 2.17
1256 1273 4.344865 AGACGCCACGCCCCAAAT 62.345 61.111 0.00 0.00 0.00 2.32
1262 1279 3.276846 AAACACAGACGCCACGCC 61.277 61.111 0.00 0.00 0.00 5.68
1264 1281 2.047151 AAGCAAACACAGACGCCACG 62.047 55.000 0.00 0.00 0.00 4.94
1265 1282 0.941542 TAAGCAAACACAGACGCCAC 59.058 50.000 0.00 0.00 0.00 5.01
1268 1285 1.201921 CCGATAAGCAAACACAGACGC 60.202 52.381 0.00 0.00 0.00 5.19
1269 1286 2.066262 ACCGATAAGCAAACACAGACG 58.934 47.619 0.00 0.00 0.00 4.18
1271 1288 4.242475 CACTACCGATAAGCAAACACAGA 58.758 43.478 0.00 0.00 0.00 3.41
1286 1303 3.067106 AGAAGCATCACAAACACTACCG 58.933 45.455 0.00 0.00 0.00 4.02
1287 1304 3.365364 GCAGAAGCATCACAAACACTACC 60.365 47.826 0.00 0.00 41.58 3.18
1417 1434 2.673833 AGCTCGTACCTTGAAGAAACG 58.326 47.619 11.39 11.39 34.99 3.60
1421 1438 1.618837 AGCAAGCTCGTACCTTGAAGA 59.381 47.619 12.79 0.00 41.64 2.87
1435 1452 5.529060 AGCATATTAAGGTAGAACAGCAAGC 59.471 40.000 0.00 0.00 0.00 4.01
1436 1453 6.540189 ACAGCATATTAAGGTAGAACAGCAAG 59.460 38.462 0.00 0.00 0.00 4.01
1448 1473 6.017605 CCAAGCTTAGTGACAGCATATTAAGG 60.018 42.308 0.00 0.00 39.99 2.69
1453 1478 3.209410 GCCAAGCTTAGTGACAGCATAT 58.791 45.455 0.00 0.00 39.99 1.78
1480 1505 0.674895 GCCCATCCATACGGCAGATC 60.675 60.000 0.00 0.00 42.52 2.75
1486 1511 2.178912 AATTACGCCCATCCATACGG 57.821 50.000 0.00 0.00 0.00 4.02
1488 1513 5.050363 CGCATATAATTACGCCCATCCATAC 60.050 44.000 0.00 0.00 0.00 2.39
1492 1517 3.063452 CACGCATATAATTACGCCCATCC 59.937 47.826 0.00 0.00 0.00 3.51
1495 1520 2.224329 ACCACGCATATAATTACGCCCA 60.224 45.455 0.00 0.00 0.00 5.36
1496 1521 2.419667 ACCACGCATATAATTACGCCC 58.580 47.619 0.00 0.00 0.00 6.13
1499 1524 4.725556 AGCAACCACGCATATAATTACG 57.274 40.909 0.00 0.00 0.00 3.18
1512 1537 3.191162 TCAGCAACATATGAAGCAACCAC 59.809 43.478 20.43 0.00 0.00 4.16
1518 1543 5.765176 TGCATAATCAGCAACATATGAAGC 58.235 37.500 10.38 12.43 39.39 3.86
1522 1547 5.700722 ACCTGCATAATCAGCAACATATG 57.299 39.130 0.00 0.00 42.17 1.78
1525 1550 3.382546 GGAACCTGCATAATCAGCAACAT 59.617 43.478 0.00 0.00 42.17 2.71
1526 1551 2.754552 GGAACCTGCATAATCAGCAACA 59.245 45.455 0.00 0.00 42.17 3.33
1527 1552 3.427161 GGAACCTGCATAATCAGCAAC 57.573 47.619 0.00 0.00 42.17 4.17
1556 1582 2.883267 GATGCACTCACCCCAGAGGC 62.883 65.000 0.00 0.00 40.58 4.70
1603 1629 0.555769 AAACCCTCACCTTGGAAGCA 59.444 50.000 0.00 0.00 0.00 3.91
1618 1686 1.002033 CACAGCTCAAGTGCTCAAACC 60.002 52.381 0.00 0.00 41.98 3.27
1724 1886 7.987458 ACTGACATAAATGTAACTGGGATAGTG 59.013 37.037 0.00 0.00 41.95 2.74
1731 1893 5.867174 TGACGACTGACATAAATGTAACTGG 59.133 40.000 0.00 0.00 41.95 4.00
1749 1911 3.334691 TCCAAAACAGATCCATGACGAC 58.665 45.455 0.00 0.00 0.00 4.34
1757 1919 9.657419 AATTATGTTTGAATCCAAAACAGATCC 57.343 29.630 7.66 0.00 43.18 3.36
1800 1963 0.106268 TCCTGCAAGAAGGCCAAACA 60.106 50.000 5.01 0.00 37.24 2.83
1832 1995 2.130395 CCGAACAGATCCATGTCATCG 58.870 52.381 0.00 0.00 34.66 3.84
1954 2162 6.494146 GGATAATTGCCTAGTAGTCAGTAGGT 59.506 42.308 7.25 0.00 46.12 3.08
1955 2163 6.722129 AGGATAATTGCCTAGTAGTCAGTAGG 59.278 42.308 0.23 1.78 46.84 3.18
1958 2166 5.221541 GCAGGATAATTGCCTAGTAGTCAGT 60.222 44.000 1.82 0.00 35.54 3.41
1965 2173 2.808202 CGCTGCAGGATAATTGCCTAGT 60.808 50.000 17.12 0.00 40.81 2.57
1969 2177 0.740737 AACGCTGCAGGATAATTGCC 59.259 50.000 17.12 0.00 40.81 4.52
1974 2182 2.988010 AGATGAACGCTGCAGGATAA 57.012 45.000 17.12 0.00 0.00 1.75
1986 2194 7.327275 CGACAATATAAGCCAGACTAGATGAAC 59.673 40.741 0.00 0.00 0.00 3.18
2012 2220 3.488553 GGTGTTAGCACAAACTGGACAAC 60.489 47.826 12.05 0.00 46.95 3.32
2036 2261 2.760092 GGATTTGCCACCTAAATGAGCA 59.240 45.455 0.00 0.00 36.34 4.26
2040 2266 2.358898 CGGAGGATTTGCCACCTAAATG 59.641 50.000 0.00 0.00 44.54 2.32
2189 2415 9.247861 TGCATCAGTGAGCTATAATAGAGATAA 57.752 33.333 13.40 0.00 0.00 1.75
2226 2455 2.033424 GTGAAAGCAGGGTGTCAACTTC 59.967 50.000 0.00 0.00 0.00 3.01
2232 2461 1.876156 CAAGAGTGAAAGCAGGGTGTC 59.124 52.381 0.00 0.00 0.00 3.67
2431 2669 3.677648 CAGCAGCAACAGGTGGGC 61.678 66.667 0.00 0.00 0.00 5.36
2437 2675 1.201647 CCAAGAATCCAGCAGCAACAG 59.798 52.381 0.00 0.00 0.00 3.16
2471 2709 5.584649 GGACGACATAATGTTTTCCAGATCA 59.415 40.000 0.00 0.00 33.89 2.92
2563 2804 7.702348 GCAATTCAACTATTTAAAGGTAGCAGG 59.298 37.037 0.00 0.00 0.00 4.85
2586 2827 1.539388 CCATTACAAACCGCTCAGCAA 59.461 47.619 0.00 0.00 0.00 3.91
2681 2922 8.999994 GAGTCACAGCTCAGATATGGAAACAAC 62.000 44.444 0.00 0.00 38.55 3.32
2709 2952 2.930682 GCTTGGTGGTAAGATCGAGTTC 59.069 50.000 0.00 0.00 0.00 3.01
2715 2958 6.458888 GCTTCTTATTGCTTGGTGGTAAGATC 60.459 42.308 0.00 0.00 33.05 2.75
2753 2996 3.323243 ACGATTAAGCAAACGTACAGCT 58.677 40.909 3.76 3.76 41.03 4.24
2762 3005 9.134734 GTCCATAAATTGAAACGATTAAGCAAA 57.865 29.630 0.00 0.00 0.00 3.68
2773 3016 8.753497 ATCCTCCTAAGTCCATAAATTGAAAC 57.247 34.615 0.00 0.00 0.00 2.78
2783 3026 1.202698 GCGCAATCCTCCTAAGTCCAT 60.203 52.381 0.30 0.00 0.00 3.41
2785 3028 0.178068 TGCGCAATCCTCCTAAGTCC 59.822 55.000 8.16 0.00 0.00 3.85
2788 3031 1.162800 GGCTGCGCAATCCTCCTAAG 61.163 60.000 13.05 0.00 0.00 2.18
2789 3032 1.153168 GGCTGCGCAATCCTCCTAA 60.153 57.895 13.05 0.00 0.00 2.69
2790 3033 1.626356 AAGGCTGCGCAATCCTCCTA 61.626 55.000 25.43 0.00 0.00 2.94
2791 3034 1.626356 TAAGGCTGCGCAATCCTCCT 61.626 55.000 25.43 16.93 0.00 3.69
2802 3045 1.095600 GTGTAAGGGCTTAAGGCTGC 58.904 55.000 26.23 13.13 41.46 5.25
2842 3085 2.038863 TATCCACCTGAACACCCAGT 57.961 50.000 0.00 0.00 32.43 4.00
2847 3090 6.640518 TCAGTTATCTTATCCACCTGAACAC 58.359 40.000 0.00 0.00 0.00 3.32
2851 3094 6.440647 ACACTTCAGTTATCTTATCCACCTGA 59.559 38.462 0.00 0.00 0.00 3.86
2853 3096 6.875972 ACACTTCAGTTATCTTATCCACCT 57.124 37.500 0.00 0.00 0.00 4.00
2854 3097 6.183360 GCAACACTTCAGTTATCTTATCCACC 60.183 42.308 0.00 0.00 0.00 4.61
2855 3098 6.595716 AGCAACACTTCAGTTATCTTATCCAC 59.404 38.462 0.00 0.00 0.00 4.02
2856 3099 6.711277 AGCAACACTTCAGTTATCTTATCCA 58.289 36.000 0.00 0.00 0.00 3.41
2859 3102 8.621532 TCAAAGCAACACTTCAGTTATCTTAT 57.378 30.769 0.00 0.00 37.75 1.73
2861 3104 6.767902 TCTCAAAGCAACACTTCAGTTATCTT 59.232 34.615 0.00 0.00 37.75 2.40
2862 3105 6.291377 TCTCAAAGCAACACTTCAGTTATCT 58.709 36.000 0.00 0.00 37.75 1.98
2863 3106 6.545504 TCTCAAAGCAACACTTCAGTTATC 57.454 37.500 0.00 0.00 37.75 1.75
2864 3107 6.942532 TTCTCAAAGCAACACTTCAGTTAT 57.057 33.333 0.00 0.00 37.75 1.89
2879 3122 2.228343 CCTGCCTTCTTGCTTCTCAAAG 59.772 50.000 0.00 0.00 33.65 2.77
2880 3123 2.233271 CCTGCCTTCTTGCTTCTCAAA 58.767 47.619 0.00 0.00 33.65 2.69
2882 3125 0.607489 GCCTGCCTTCTTGCTTCTCA 60.607 55.000 0.00 0.00 0.00 3.27
2883 3126 1.642952 CGCCTGCCTTCTTGCTTCTC 61.643 60.000 0.00 0.00 0.00 2.87
2884 3127 1.673665 CGCCTGCCTTCTTGCTTCT 60.674 57.895 0.00 0.00 0.00 2.85
2885 3128 2.873288 CGCCTGCCTTCTTGCTTC 59.127 61.111 0.00 0.00 0.00 3.86
2886 3129 3.368571 GCGCCTGCCTTCTTGCTT 61.369 61.111 0.00 0.00 33.98 3.91
2888 3131 4.112341 CAGCGCCTGCCTTCTTGC 62.112 66.667 2.29 0.00 44.31 4.01
2889 3132 3.437795 CCAGCGCCTGCCTTCTTG 61.438 66.667 2.29 0.00 44.31 3.02
2890 3133 2.697147 TTTCCAGCGCCTGCCTTCTT 62.697 55.000 2.29 0.00 44.31 2.52
2891 3134 2.490270 ATTTCCAGCGCCTGCCTTCT 62.490 55.000 2.29 0.00 44.31 2.85
2892 3135 1.997928 GATTTCCAGCGCCTGCCTTC 61.998 60.000 2.29 0.00 44.31 3.46
2893 3136 2.036256 ATTTCCAGCGCCTGCCTT 59.964 55.556 2.29 0.00 44.31 4.35
2894 3137 2.439156 GATTTCCAGCGCCTGCCT 60.439 61.111 2.29 0.00 44.31 4.75
2895 3138 2.751436 TGATTTCCAGCGCCTGCC 60.751 61.111 2.29 0.00 44.31 4.85
2896 3139 2.042831 ACTGATTTCCAGCGCCTGC 61.043 57.895 2.29 0.00 46.81 4.85
2899 3142 2.486966 GCACTGATTTCCAGCGCC 59.513 61.111 2.29 0.00 46.81 6.53
2901 3144 1.133253 CGTGCACTGATTTCCAGCG 59.867 57.895 16.19 0.00 46.81 5.18
2902 3145 0.166814 GACGTGCACTGATTTCCAGC 59.833 55.000 16.19 0.00 46.81 4.85
2904 3147 0.396435 AGGACGTGCACTGATTTCCA 59.604 50.000 16.19 0.00 0.00 3.53
2905 3148 1.464997 GAAGGACGTGCACTGATTTCC 59.535 52.381 16.19 11.95 0.00 3.13
2906 3149 2.096218 GTGAAGGACGTGCACTGATTTC 60.096 50.000 16.19 13.37 0.00 2.17
2907 3150 1.873591 GTGAAGGACGTGCACTGATTT 59.126 47.619 16.19 4.29 0.00 2.17
2908 3151 1.202639 TGTGAAGGACGTGCACTGATT 60.203 47.619 16.19 4.23 33.83 2.57
2909 3152 0.392706 TGTGAAGGACGTGCACTGAT 59.607 50.000 16.19 0.00 33.83 2.90
2910 3153 0.176910 TTGTGAAGGACGTGCACTGA 59.823 50.000 16.19 0.00 33.83 3.41
2911 3154 1.195448 GATTGTGAAGGACGTGCACTG 59.805 52.381 16.19 11.05 33.83 3.66
2912 3155 1.202639 TGATTGTGAAGGACGTGCACT 60.203 47.619 16.19 1.46 33.83 4.40
2913 3156 1.225855 TGATTGTGAAGGACGTGCAC 58.774 50.000 10.52 6.82 0.00 4.57
2916 3159 1.739466 CCCATGATTGTGAAGGACGTG 59.261 52.381 0.00 0.00 0.00 4.49
2917 3160 1.351017 ACCCATGATTGTGAAGGACGT 59.649 47.619 0.00 0.00 0.00 4.34
2919 3162 3.378427 GCTTACCCATGATTGTGAAGGAC 59.622 47.826 0.00 0.00 0.00 3.85
2920 3163 3.010027 TGCTTACCCATGATTGTGAAGGA 59.990 43.478 0.00 0.00 0.00 3.36
2921 3164 3.355378 TGCTTACCCATGATTGTGAAGG 58.645 45.455 0.00 0.00 0.00 3.46
2922 3165 4.400251 ACATGCTTACCCATGATTGTGAAG 59.600 41.667 8.93 0.00 44.12 3.02
2923 3166 4.343231 ACATGCTTACCCATGATTGTGAA 58.657 39.130 8.93 0.00 44.12 3.18
2924 3167 3.947196 GACATGCTTACCCATGATTGTGA 59.053 43.478 8.93 0.00 44.12 3.58
2925 3168 3.695556 TGACATGCTTACCCATGATTGTG 59.304 43.478 8.93 0.00 44.12 3.33
2927 3170 5.524971 AATGACATGCTTACCCATGATTG 57.475 39.130 8.93 0.00 44.12 2.67
2928 3171 6.154877 TCAAAATGACATGCTTACCCATGATT 59.845 34.615 8.93 0.00 44.12 2.57
2929 3172 5.657745 TCAAAATGACATGCTTACCCATGAT 59.342 36.000 8.93 0.00 44.12 2.45
2931 3174 5.104374 GTCAAAATGACATGCTTACCCATG 58.896 41.667 5.65 0.94 46.22 3.66
2932 3175 5.329035 GTCAAAATGACATGCTTACCCAT 57.671 39.130 5.65 0.00 46.22 4.00
2933 3176 4.782019 GTCAAAATGACATGCTTACCCA 57.218 40.909 5.65 0.00 46.22 4.51
2952 3195 6.801862 GCAAGTTTAATTGGTAGACATGTGTC 59.198 38.462 1.15 5.01 45.08 3.67
2953 3196 6.294508 GGCAAGTTTAATTGGTAGACATGTGT 60.295 38.462 1.15 0.22 0.00 3.72
2954 3197 6.092748 GGCAAGTTTAATTGGTAGACATGTG 58.907 40.000 1.15 0.00 0.00 3.21
2956 3199 6.092748 GTGGCAAGTTTAATTGGTAGACATG 58.907 40.000 0.00 0.00 0.00 3.21
2957 3200 5.185056 GGTGGCAAGTTTAATTGGTAGACAT 59.815 40.000 0.00 0.00 0.00 3.06
2958 3201 4.521256 GGTGGCAAGTTTAATTGGTAGACA 59.479 41.667 0.00 0.00 0.00 3.41
2959 3202 4.765339 AGGTGGCAAGTTTAATTGGTAGAC 59.235 41.667 0.00 0.00 0.00 2.59
2960 3203 4.993028 AGGTGGCAAGTTTAATTGGTAGA 58.007 39.130 0.00 0.00 0.00 2.59
2962 3205 3.754323 CGAGGTGGCAAGTTTAATTGGTA 59.246 43.478 0.00 0.00 0.00 3.25
2964 3207 2.556622 ACGAGGTGGCAAGTTTAATTGG 59.443 45.455 0.00 0.00 0.00 3.16
2965 3208 3.004315 ACACGAGGTGGCAAGTTTAATTG 59.996 43.478 0.00 0.00 37.94 2.32
2966 3209 3.219281 ACACGAGGTGGCAAGTTTAATT 58.781 40.909 0.00 0.00 37.94 1.40
2967 3210 2.812011 GACACGAGGTGGCAAGTTTAAT 59.188 45.455 0.00 0.00 41.94 1.40
2968 3211 2.215196 GACACGAGGTGGCAAGTTTAA 58.785 47.619 0.00 0.00 41.94 1.52
2969 3212 1.873698 GACACGAGGTGGCAAGTTTA 58.126 50.000 0.00 0.00 41.94 2.01
2970 3213 2.702847 GACACGAGGTGGCAAGTTT 58.297 52.632 0.00 0.00 41.94 2.66
2971 3214 4.456806 GACACGAGGTGGCAAGTT 57.543 55.556 0.00 0.00 41.94 2.66
2976 3219 0.531974 TTCAGTTGACACGAGGTGGC 60.532 55.000 0.42 0.00 42.82 5.01
2977 3220 1.202533 ACTTCAGTTGACACGAGGTGG 60.203 52.381 0.42 0.00 37.94 4.61
2979 3222 2.981859 AACTTCAGTTGACACGAGGT 57.018 45.000 0.00 0.00 36.80 3.85
2991 3731 3.374220 TTTTGAGCATGGCAACTTCAG 57.626 42.857 0.00 0.00 37.61 3.02
2992 3732 3.306225 GGATTTTGAGCATGGCAACTTCA 60.306 43.478 0.00 0.00 37.61 3.02
2993 3733 3.256558 GGATTTTGAGCATGGCAACTTC 58.743 45.455 0.00 0.00 37.61 3.01
2995 3735 1.203052 CGGATTTTGAGCATGGCAACT 59.797 47.619 0.00 0.00 37.61 3.16
2996 3736 1.202114 TCGGATTTTGAGCATGGCAAC 59.798 47.619 0.00 0.00 0.00 4.17
2998 3738 0.810648 GTCGGATTTTGAGCATGGCA 59.189 50.000 0.00 0.00 0.00 4.92
3025 3765 1.961277 GACACGAGGTGGCAAGTGG 60.961 63.158 14.87 0.00 41.94 4.00
3026 3766 3.642755 GACACGAGGTGGCAAGTG 58.357 61.111 10.66 10.66 41.94 3.16
3031 3771 0.531974 TTCAGTTGACACGAGGTGGC 60.532 55.000 0.42 0.00 42.82 5.01
3032 3772 1.202533 ACTTCAGTTGACACGAGGTGG 60.203 52.381 0.42 0.00 37.94 4.61
3033 3773 2.225068 ACTTCAGTTGACACGAGGTG 57.775 50.000 0.00 0.00 39.75 4.00
3034 3774 2.981859 AACTTCAGTTGACACGAGGT 57.018 45.000 0.00 0.00 36.80 3.85
3065 3805 5.957910 TTTTAAACATGGCAACTCAAACG 57.042 34.783 0.00 0.00 37.61 3.60
3101 3842 1.068816 GGAACCGGAAACAAATCGTGG 60.069 52.381 9.46 0.00 0.00 4.94
3104 3845 2.550606 TGAAGGAACCGGAAACAAATCG 59.449 45.455 9.46 0.00 0.00 3.34
3115 3856 1.024579 CCCGACCATTGAAGGAACCG 61.025 60.000 0.00 0.00 0.00 4.44
3134 3875 6.814146 ACTAACTAAAAGTAGATGCAGAGTGC 59.186 38.462 0.00 0.00 45.29 4.40
3163 3904 0.611714 GTACCCCGACCATTGTGTCT 59.388 55.000 0.00 0.00 32.97 3.41
3164 3905 0.611714 AGTACCCCGACCATTGTGTC 59.388 55.000 0.00 0.00 0.00 3.67
3165 3906 0.611714 GAGTACCCCGACCATTGTGT 59.388 55.000 0.00 0.00 0.00 3.72
3166 3907 0.902531 AGAGTACCCCGACCATTGTG 59.097 55.000 0.00 0.00 0.00 3.33
3167 3908 0.902531 CAGAGTACCCCGACCATTGT 59.097 55.000 0.00 0.00 0.00 2.71
3168 3909 0.462047 GCAGAGTACCCCGACCATTG 60.462 60.000 0.00 0.00 0.00 2.82
3169 3910 0.907704 TGCAGAGTACCCCGACCATT 60.908 55.000 0.00 0.00 0.00 3.16
3170 3911 0.691078 ATGCAGAGTACCCCGACCAT 60.691 55.000 0.00 0.00 0.00 3.55
3171 3912 1.305802 ATGCAGAGTACCCCGACCA 60.306 57.895 0.00 0.00 0.00 4.02
3172 3913 1.043673 AGATGCAGAGTACCCCGACC 61.044 60.000 0.00 0.00 0.00 4.79
3173 3914 1.337387 GTAGATGCAGAGTACCCCGAC 59.663 57.143 0.00 0.00 0.00 4.79
3174 3915 1.214673 AGTAGATGCAGAGTACCCCGA 59.785 52.381 0.00 0.00 0.00 5.14
3175 3916 1.693627 AGTAGATGCAGAGTACCCCG 58.306 55.000 0.00 0.00 0.00 5.73
3176 3917 4.489306 AAAAGTAGATGCAGAGTACCCC 57.511 45.455 0.00 0.00 0.00 4.95
3177 3918 6.223351 ACTAAAAGTAGATGCAGAGTACCC 57.777 41.667 0.00 0.00 0.00 3.69
3178 3919 8.468399 ACTAACTAAAAGTAGATGCAGAGTACC 58.532 37.037 0.00 0.00 0.00 3.34
3179 3920 9.291664 CACTAACTAAAAGTAGATGCAGAGTAC 57.708 37.037 0.00 0.00 0.00 2.73
3180 3921 7.974501 GCACTAACTAAAAGTAGATGCAGAGTA 59.025 37.037 0.00 0.00 31.64 2.59
3181 3922 6.814146 GCACTAACTAAAAGTAGATGCAGAGT 59.186 38.462 0.00 0.00 31.64 3.24
3182 3923 6.256757 GGCACTAACTAAAAGTAGATGCAGAG 59.743 42.308 0.00 0.00 32.28 3.35
3183 3924 6.106673 GGCACTAACTAAAAGTAGATGCAGA 58.893 40.000 0.00 0.00 32.28 4.26
3184 3925 5.874810 TGGCACTAACTAAAAGTAGATGCAG 59.125 40.000 0.00 0.00 32.28 4.41
3185 3926 5.800296 TGGCACTAACTAAAAGTAGATGCA 58.200 37.500 0.00 0.00 32.28 3.96
3186 3927 6.106673 TCTGGCACTAACTAAAAGTAGATGC 58.893 40.000 0.00 0.00 0.00 3.91
3187 3928 7.489757 GTCTCTGGCACTAACTAAAAGTAGATG 59.510 40.741 0.00 0.00 0.00 2.90
3188 3929 7.178628 TGTCTCTGGCACTAACTAAAAGTAGAT 59.821 37.037 0.00 0.00 0.00 1.98
3189 3930 6.492429 TGTCTCTGGCACTAACTAAAAGTAGA 59.508 38.462 0.00 0.00 0.00 2.59
3190 3931 6.688578 TGTCTCTGGCACTAACTAAAAGTAG 58.311 40.000 0.00 0.00 0.00 2.57
3191 3932 6.659745 TGTCTCTGGCACTAACTAAAAGTA 57.340 37.500 0.00 0.00 0.00 2.24
3192 3933 5.546621 TGTCTCTGGCACTAACTAAAAGT 57.453 39.130 0.00 0.00 0.00 2.66
3193 3934 6.861065 TTTGTCTCTGGCACTAACTAAAAG 57.139 37.500 0.00 0.00 0.00 2.27
3194 3935 7.633193 TTTTTGTCTCTGGCACTAACTAAAA 57.367 32.000 6.63 6.63 0.00 1.52
3241 3982 0.609957 CAGAGTGCCTGGCCATTGAA 60.610 55.000 17.53 0.00 39.23 2.69
3249 3990 2.634815 AATAGATGCAGAGTGCCTGG 57.365 50.000 0.00 0.00 44.23 4.45
3298 4039 5.840243 TCATGCTATTTCTCATGGTTTGG 57.160 39.130 0.00 0.00 40.20 3.28
3314 4055 6.006275 AGTGGGATTTGTTAGTATCATGCT 57.994 37.500 0.00 0.00 0.00 3.79
3342 4083 2.125685 CATAGCTGATCAGACGCACTG 58.874 52.381 27.04 9.40 46.97 3.66
3348 4089 5.970023 GCAAAATTGTCATAGCTGATCAGAC 59.030 40.000 27.04 16.75 32.98 3.51
3356 4097 5.709164 AGTCTTCTGCAAAATTGTCATAGCT 59.291 36.000 0.00 0.00 0.00 3.32
3359 4100 6.003326 TGGAGTCTTCTGCAAAATTGTCATA 58.997 36.000 0.00 0.00 38.99 2.15
3360 4101 4.828939 TGGAGTCTTCTGCAAAATTGTCAT 59.171 37.500 0.00 0.00 38.99 3.06
3361 4102 4.206375 TGGAGTCTTCTGCAAAATTGTCA 58.794 39.130 0.00 0.00 38.99 3.58
3362 4103 4.836125 TGGAGTCTTCTGCAAAATTGTC 57.164 40.909 0.00 0.00 38.99 3.18
3363 4104 5.796424 AATGGAGTCTTCTGCAAAATTGT 57.204 34.783 0.00 0.00 44.56 2.71
3364 4105 6.565247 GCAAAATGGAGTCTTCTGCAAAATTG 60.565 38.462 0.00 0.00 44.56 2.32
3365 4106 5.467735 GCAAAATGGAGTCTTCTGCAAAATT 59.532 36.000 0.00 0.00 44.56 1.82
3366 4107 4.992951 GCAAAATGGAGTCTTCTGCAAAAT 59.007 37.500 0.00 0.00 44.56 1.82
3367 4108 4.099881 AGCAAAATGGAGTCTTCTGCAAAA 59.900 37.500 0.00 0.00 44.56 2.44
3368 4109 3.638160 AGCAAAATGGAGTCTTCTGCAAA 59.362 39.130 0.00 0.00 44.56 3.68
3369 4110 3.225104 AGCAAAATGGAGTCTTCTGCAA 58.775 40.909 0.00 0.00 44.56 4.08
3370 4111 2.816087 GAGCAAAATGGAGTCTTCTGCA 59.184 45.455 0.00 0.00 45.39 4.41
3371 4112 3.080319 AGAGCAAAATGGAGTCTTCTGC 58.920 45.455 0.00 0.00 0.00 4.26
3372 4113 5.702349 AAAGAGCAAAATGGAGTCTTCTG 57.298 39.130 0.00 0.00 0.00 3.02
3373 4114 6.652900 GTCTAAAGAGCAAAATGGAGTCTTCT 59.347 38.462 0.00 0.00 0.00 2.85
3374 4115 6.128145 GGTCTAAAGAGCAAAATGGAGTCTTC 60.128 42.308 4.35 0.00 41.81 2.87
3375 4116 5.707764 GGTCTAAAGAGCAAAATGGAGTCTT 59.292 40.000 4.35 0.00 41.81 3.01
3376 4117 5.249420 GGTCTAAAGAGCAAAATGGAGTCT 58.751 41.667 4.35 0.00 41.81 3.24
3377 4118 5.553290 GGTCTAAAGAGCAAAATGGAGTC 57.447 43.478 4.35 0.00 41.81 3.36
3388 4129 2.092699 AGGATTGGCTGGTCTAAAGAGC 60.093 50.000 2.22 2.22 42.48 4.09
3389 4130 3.432890 GGAGGATTGGCTGGTCTAAAGAG 60.433 52.174 0.00 0.00 0.00 2.85
3390 4131 2.505819 GGAGGATTGGCTGGTCTAAAGA 59.494 50.000 0.00 0.00 0.00 2.52
3391 4132 2.422093 GGGAGGATTGGCTGGTCTAAAG 60.422 54.545 0.00 0.00 0.00 1.85
3392 4133 1.564348 GGGAGGATTGGCTGGTCTAAA 59.436 52.381 0.00 0.00 0.00 1.85
3393 4134 1.213296 GGGAGGATTGGCTGGTCTAA 58.787 55.000 0.00 0.00 0.00 2.10
3394 4135 0.343372 AGGGAGGATTGGCTGGTCTA 59.657 55.000 0.00 0.00 0.00 2.59
3395 4136 0.985490 GAGGGAGGATTGGCTGGTCT 60.985 60.000 0.00 0.00 0.00 3.85
3396 4137 1.529309 GAGGGAGGATTGGCTGGTC 59.471 63.158 0.00 0.00 0.00 4.02
3397 4138 2.003548 GGAGGGAGGATTGGCTGGT 61.004 63.158 0.00 0.00 0.00 4.00
3398 4139 2.761465 GGGAGGGAGGATTGGCTGG 61.761 68.421 0.00 0.00 0.00 4.85
3399 4140 2.002977 TGGGAGGGAGGATTGGCTG 61.003 63.158 0.00 0.00 0.00 4.85
3400 4141 2.003548 GTGGGAGGGAGGATTGGCT 61.004 63.158 0.00 0.00 0.00 4.75
3401 4142 2.597903 GTGGGAGGGAGGATTGGC 59.402 66.667 0.00 0.00 0.00 4.52
3402 4143 3.335711 GGTGGGAGGGAGGATTGG 58.664 66.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.