Multiple sequence alignment - TraesCS2B01G145700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G145700 chr2B 100.000 9574 0 0 1 9574 111463132 111453559 0.000000e+00 17680.0
1 TraesCS2B01G145700 chr2B 97.778 45 1 0 2788 2832 683097508 683097464 2.870000e-10 78.7
2 TraesCS2B01G145700 chr2D 95.795 7538 239 33 891 8380 73578297 73570790 0.000000e+00 12092.0
3 TraesCS2B01G145700 chr2D 87.294 850 46 31 1 811 73579155 73578329 0.000000e+00 915.0
4 TraesCS2B01G145700 chr2D 90.388 593 31 13 8916 9500 73569797 73569223 0.000000e+00 756.0
5 TraesCS2B01G145700 chr2D 76.462 701 93 34 5321 5969 353021905 353022585 2.010000e-81 315.0
6 TraesCS2B01G145700 chr2D 91.089 202 9 4 8573 8770 73570237 73570041 2.050000e-66 265.0
7 TraesCS2B01G145700 chr2D 98.649 148 2 0 8430 8577 73570428 73570281 7.370000e-66 263.0
8 TraesCS2B01G145700 chr2D 83.721 129 10 8 2795 2916 11147601 11147477 2.830000e-20 111.0
9 TraesCS2B01G145700 chr2D 87.629 97 6 5 2817 2912 378751636 378751545 3.660000e-19 108.0
10 TraesCS2B01G145700 chr2A 96.419 5278 158 24 1549 6811 73165431 73160170 0.000000e+00 8671.0
11 TraesCS2B01G145700 chr2A 94.361 1791 57 10 6810 8577 73160081 73158312 0.000000e+00 2708.0
12 TraesCS2B01G145700 chr2A 88.040 694 38 18 8816 9502 73157898 73157243 0.000000e+00 780.0
13 TraesCS2B01G145700 chr2A 88.636 616 49 7 891 1488 73166040 73165428 0.000000e+00 730.0
14 TraesCS2B01G145700 chr2A 87.115 520 29 13 1 515 73166823 73166337 1.090000e-153 555.0
15 TraesCS2B01G145700 chr2A 92.823 209 8 6 8573 8774 73158268 73158060 7.270000e-76 296.0
16 TraesCS2B01G145700 chr2A 75.837 418 49 19 5582 5957 471219647 471220054 2.140000e-36 165.0
17 TraesCS2B01G145700 chr7D 82.443 131 19 4 2788 2916 254579258 254579386 2.830000e-20 111.0
18 TraesCS2B01G145700 chr7D 87.000 100 7 6 2817 2912 38613550 38613647 3.660000e-19 108.0
19 TraesCS2B01G145700 chr7A 82.946 129 16 4 2788 2912 57212657 57212783 2.830000e-20 111.0
20 TraesCS2B01G145700 chr5D 89.888 89 5 3 2824 2912 98244605 98244689 2.830000e-20 111.0
21 TraesCS2B01G145700 chrUn 81.818 132 10 10 2788 2910 39720773 39720899 2.200000e-16 99.0
22 TraesCS2B01G145700 chr6B 79.562 137 11 11 2788 2912 715954496 715954365 2.220000e-11 82.4
23 TraesCS2B01G145700 chr7B 89.796 49 1 3 2788 2834 683996896 683996942 1.040000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G145700 chr2B 111453559 111463132 9573 True 17680.0 17680 100.000000 1 9574 1 chr2B.!!$R1 9573
1 TraesCS2B01G145700 chr2D 73569223 73579155 9932 True 2858.2 12092 92.643000 1 9500 5 chr2D.!!$R3 9499
2 TraesCS2B01G145700 chr2D 353021905 353022585 680 False 315.0 315 76.462000 5321 5969 1 chr2D.!!$F1 648
3 TraesCS2B01G145700 chr2A 73157243 73166823 9580 True 2290.0 8671 91.232333 1 9502 6 chr2A.!!$R1 9501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 851 0.036388 ACAATGAGTAGTGTGCGGGG 60.036 55.000 0.00 0.00 33.22 5.73 F
865 909 0.111446 TCCAAGGAACAAATGGCGGA 59.889 50.000 0.00 0.00 34.13 5.54 F
2281 2358 0.322816 AGGACTGCCGTTTGATGCAT 60.323 50.000 0.00 0.00 39.96 3.96 F
2836 2917 0.464735 TACTTGGTGTGTGTGTGGCC 60.465 55.000 0.00 0.00 0.00 5.36 F
3663 3747 0.537188 CAGATAGAACCCTGCCACGT 59.463 55.000 0.00 0.00 0.00 4.49 F
3720 3804 3.926821 TCATACACAACTAGCGTGTCA 57.073 42.857 18.88 8.84 44.11 3.58 F
4556 4640 1.313091 ACGTCGACTATGAGGCAGCA 61.313 55.000 14.70 0.00 0.00 4.41 F
5578 5681 0.330604 ATCATGCTGCCACAGGTCTT 59.669 50.000 0.00 0.00 31.21 3.01 F
6617 6764 0.105964 AGTGCAACAGACTAACGGCA 59.894 50.000 0.00 0.00 41.43 5.69 F
7931 8168 0.179111 TTTACCAGGATCTGCTCGCG 60.179 55.000 0.00 0.00 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1715 0.478072 TTGAGGGAAGAAGGCTGCAA 59.522 50.000 0.50 0.00 0.0 4.08 R
2460 2538 0.676782 GCACCAAACGGCAGTCCTAT 60.677 55.000 0.00 0.00 0.0 2.57 R
3402 3486 0.111446 TGGGCCGAACTCCAATGAAA 59.889 50.000 0.00 0.00 0.0 2.69 R
4385 4469 1.601412 GCAAAAGAGCAGCAAGGACAC 60.601 52.381 0.00 0.00 0.0 3.67 R
4556 4640 2.270352 TTCTGAGTTTCGTGGCCAAT 57.730 45.000 7.24 0.00 0.0 3.16 R
5176 5264 3.445096 ACCTTGTTCTTCCTTGCATATGC 59.555 43.478 21.09 21.09 42.5 3.14 R
6253 6398 0.389948 AAGATCGAACAGACCACGCC 60.390 55.000 0.00 0.00 0.0 5.68 R
6991 7228 3.066291 TGCCAACATATCCGAACAGTT 57.934 42.857 0.00 0.00 0.0 3.16 R
8133 8389 0.321122 AAGTAGACACAGGCAGCAGC 60.321 55.000 0.00 0.00 41.1 5.25 R
8833 9580 0.040204 ACTCCATTTCAGGGCCTTGG 59.960 55.000 15.86 14.74 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 197 3.131478 CCGCCCGGATCCACAAAC 61.131 66.667 13.41 0.00 37.50 2.93
309 322 0.314935 TCGTTAACGTCACCCTCACC 59.685 55.000 25.98 0.00 40.80 4.02
315 328 3.703127 GTCACCCTCACCCCCGTC 61.703 72.222 0.00 0.00 0.00 4.79
318 331 4.716977 ACCCTCACCCCCGTCCTC 62.717 72.222 0.00 0.00 0.00 3.71
319 332 4.400251 CCCTCACCCCCGTCCTCT 62.400 72.222 0.00 0.00 0.00 3.69
323 336 1.889530 CTCACCCCCGTCCTCTTCAC 61.890 65.000 0.00 0.00 0.00 3.18
328 341 1.522569 CCCGTCCTCTTCACCATCC 59.477 63.158 0.00 0.00 0.00 3.51
347 360 3.628646 CTTGGCACCTTCTCCCCCG 62.629 68.421 0.00 0.00 0.00 5.73
348 361 4.974438 TGGCACCTTCTCCCCCGT 62.974 66.667 0.00 0.00 0.00 5.28
349 362 4.410400 GGCACCTTCTCCCCCGTG 62.410 72.222 0.00 0.00 0.00 4.94
351 364 4.410400 CACCTTCTCCCCCGTGCC 62.410 72.222 0.00 0.00 0.00 5.01
352 365 4.658786 ACCTTCTCCCCCGTGCCT 62.659 66.667 0.00 0.00 0.00 4.75
355 368 4.649705 TTCTCCCCCGTGCCTCCA 62.650 66.667 0.00 0.00 0.00 3.86
367 388 0.984432 TGCCTCCATCCATGCTCTCA 60.984 55.000 0.00 0.00 0.00 3.27
397 418 0.908198 CCTCCTCCCTCCTTGTTCTG 59.092 60.000 0.00 0.00 0.00 3.02
398 419 0.251634 CTCCTCCCTCCTTGTTCTGC 59.748 60.000 0.00 0.00 0.00 4.26
400 421 1.078848 CTCCCTCCTTGTTCTGCCG 60.079 63.158 0.00 0.00 0.00 5.69
401 422 2.747855 CCCTCCTTGTTCTGCCGC 60.748 66.667 0.00 0.00 0.00 6.53
402 423 2.348998 CCTCCTTGTTCTGCCGCT 59.651 61.111 0.00 0.00 0.00 5.52
403 424 2.037136 CCTCCTTGTTCTGCCGCTG 61.037 63.158 0.00 0.00 0.00 5.18
404 425 1.004560 CTCCTTGTTCTGCCGCTGA 60.005 57.895 0.00 0.00 0.00 4.26
405 426 0.392193 CTCCTTGTTCTGCCGCTGAT 60.392 55.000 0.26 0.00 0.00 2.90
459 481 1.429463 CGTGCTCTGTGAAGGTAACC 58.571 55.000 0.00 0.00 37.17 2.85
460 482 1.000955 CGTGCTCTGTGAAGGTAACCT 59.999 52.381 0.00 0.00 33.87 3.50
461 483 2.689646 GTGCTCTGTGAAGGTAACCTC 58.310 52.381 0.00 0.00 30.89 3.85
462 484 2.037251 GTGCTCTGTGAAGGTAACCTCA 59.963 50.000 0.00 0.00 30.89 3.86
543 565 2.878520 GTGAGCGAGCGAGTGAGC 60.879 66.667 0.00 0.00 37.41 4.26
563 593 1.646189 GGTGCTCTGATTCGTTCCTC 58.354 55.000 0.00 0.00 0.00 3.71
589 633 1.142748 CTCTGAGCTACCTTGGCCG 59.857 63.158 0.00 0.00 0.00 6.13
797 841 7.731882 TCACGGAAACATTTAACAATGAGTA 57.268 32.000 1.97 0.00 42.35 2.59
798 842 7.802738 TCACGGAAACATTTAACAATGAGTAG 58.197 34.615 1.97 0.00 42.35 2.57
799 843 7.442969 TCACGGAAACATTTAACAATGAGTAGT 59.557 33.333 1.97 0.00 42.35 2.73
800 844 7.533900 CACGGAAACATTTAACAATGAGTAGTG 59.466 37.037 1.97 2.77 42.35 2.74
801 845 7.227910 ACGGAAACATTTAACAATGAGTAGTGT 59.772 33.333 1.97 0.00 42.35 3.55
803 847 7.326063 GGAAACATTTAACAATGAGTAGTGTGC 59.674 37.037 1.97 0.00 42.35 4.57
805 849 5.106712 ACATTTAACAATGAGTAGTGTGCGG 60.107 40.000 1.97 0.00 42.35 5.69
806 850 1.808411 AACAATGAGTAGTGTGCGGG 58.192 50.000 0.00 0.00 34.96 6.13
807 851 0.036388 ACAATGAGTAGTGTGCGGGG 60.036 55.000 0.00 0.00 33.22 5.73
808 852 0.249120 CAATGAGTAGTGTGCGGGGA 59.751 55.000 0.00 0.00 0.00 4.81
809 853 1.134401 CAATGAGTAGTGTGCGGGGAT 60.134 52.381 0.00 0.00 0.00 3.85
810 854 0.753262 ATGAGTAGTGTGCGGGGATC 59.247 55.000 0.00 0.00 0.00 3.36
811 855 0.613572 TGAGTAGTGTGCGGGGATCA 60.614 55.000 0.00 0.00 0.00 2.92
812 856 0.179108 GAGTAGTGTGCGGGGATCAC 60.179 60.000 0.00 0.00 35.14 3.06
813 857 0.902984 AGTAGTGTGCGGGGATCACA 60.903 55.000 0.00 0.00 41.62 3.58
814 858 0.460284 GTAGTGTGCGGGGATCACAG 60.460 60.000 0.00 0.00 44.11 3.66
815 859 0.613572 TAGTGTGCGGGGATCACAGA 60.614 55.000 0.00 0.00 44.11 3.41
816 860 1.448540 GTGTGCGGGGATCACAGAG 60.449 63.158 0.00 0.00 44.11 3.35
817 861 2.512515 GTGCGGGGATCACAGAGC 60.513 66.667 0.00 0.42 34.73 4.09
820 864 2.187946 CGGGGATCACAGAGCCAC 59.812 66.667 0.00 0.00 40.28 5.01
823 867 2.592308 GGATCACAGAGCCACCCC 59.408 66.667 0.00 0.00 38.12 4.95
849 893 2.397597 TGGATCCGTGATTCATCTCCA 58.602 47.619 7.39 0.00 0.00 3.86
853 897 2.466846 TCCGTGATTCATCTCCAAGGA 58.533 47.619 0.00 0.00 36.41 3.36
855 899 2.939103 CCGTGATTCATCTCCAAGGAAC 59.061 50.000 0.00 0.00 32.39 3.62
857 901 4.002982 CGTGATTCATCTCCAAGGAACAA 58.997 43.478 0.00 0.00 0.00 2.83
858 902 4.455533 CGTGATTCATCTCCAAGGAACAAA 59.544 41.667 0.00 0.00 0.00 2.83
859 903 5.124457 CGTGATTCATCTCCAAGGAACAAAT 59.876 40.000 0.00 0.00 0.00 2.32
860 904 6.327934 GTGATTCATCTCCAAGGAACAAATG 58.672 40.000 0.00 0.00 0.00 2.32
861 905 5.419788 TGATTCATCTCCAAGGAACAAATGG 59.580 40.000 0.00 0.00 35.49 3.16
862 906 3.091545 TCATCTCCAAGGAACAAATGGC 58.908 45.455 0.00 0.00 34.13 4.40
863 907 1.533625 TCTCCAAGGAACAAATGGCG 58.466 50.000 0.00 0.00 34.13 5.69
864 908 0.527565 CTCCAAGGAACAAATGGCGG 59.472 55.000 0.00 0.00 34.13 6.13
865 909 0.111446 TCCAAGGAACAAATGGCGGA 59.889 50.000 0.00 0.00 34.13 5.54
866 910 1.185315 CCAAGGAACAAATGGCGGAT 58.815 50.000 0.00 0.00 0.00 4.18
867 911 1.550072 CCAAGGAACAAATGGCGGATT 59.450 47.619 0.00 0.00 0.00 3.01
868 912 2.417243 CCAAGGAACAAATGGCGGATTC 60.417 50.000 0.00 0.00 0.00 2.52
869 913 2.214376 AGGAACAAATGGCGGATTCA 57.786 45.000 0.00 0.00 0.00 2.57
870 914 2.738743 AGGAACAAATGGCGGATTCAT 58.261 42.857 0.00 0.00 0.00 2.57
871 915 3.099141 AGGAACAAATGGCGGATTCATT 58.901 40.909 0.00 0.00 36.50 2.57
872 916 3.131046 AGGAACAAATGGCGGATTCATTC 59.869 43.478 0.00 0.00 34.15 2.67
873 917 3.131046 GGAACAAATGGCGGATTCATTCT 59.869 43.478 0.00 0.00 34.15 2.40
874 918 4.381932 GGAACAAATGGCGGATTCATTCTT 60.382 41.667 0.00 0.00 34.15 2.52
875 919 4.806640 ACAAATGGCGGATTCATTCTTT 57.193 36.364 0.00 0.00 34.15 2.52
876 920 5.151297 ACAAATGGCGGATTCATTCTTTT 57.849 34.783 0.00 0.00 34.15 2.27
877 921 5.550290 ACAAATGGCGGATTCATTCTTTTT 58.450 33.333 0.00 0.00 34.15 1.94
914 958 2.731976 GGCGGATTCATTCTTACGCTAG 59.268 50.000 0.00 0.00 45.55 3.42
923 967 6.589830 TCATTCTTACGCTAGCAAATCTTC 57.410 37.500 16.45 0.00 0.00 2.87
924 968 6.341316 TCATTCTTACGCTAGCAAATCTTCT 58.659 36.000 16.45 0.00 0.00 2.85
925 969 6.818644 TCATTCTTACGCTAGCAAATCTTCTT 59.181 34.615 16.45 0.00 0.00 2.52
926 970 7.334421 TCATTCTTACGCTAGCAAATCTTCTTT 59.666 33.333 16.45 0.00 0.00 2.52
932 979 6.145535 ACGCTAGCAAATCTTCTTTTCTTTG 58.854 36.000 16.45 0.00 0.00 2.77
971 1029 2.046314 TCCTAACCTTGCTGCGCC 60.046 61.111 4.18 0.00 0.00 6.53
990 1048 0.820891 CTGTGTTTCTGCCTGCCTGT 60.821 55.000 0.00 0.00 0.00 4.00
1234 1292 3.654414 GACCACAAGAACGTTCTCAGAT 58.346 45.455 29.82 12.71 36.28 2.90
1240 1298 2.530701 AGAACGTTCTCAGATGGGAGT 58.469 47.619 24.93 0.00 36.30 3.85
1242 1300 2.223803 ACGTTCTCAGATGGGAGTCT 57.776 50.000 0.00 0.00 36.30 3.24
1357 1415 2.813754 CCATGTGTTCATTCAACCGTCT 59.186 45.455 0.00 0.00 33.51 4.18
1362 1420 5.361427 TGTGTTCATTCAACCGTCTTCTTA 58.639 37.500 0.00 0.00 33.51 2.10
1367 1425 5.607477 TCATTCAACCGTCTTCTTACTTGT 58.393 37.500 0.00 0.00 0.00 3.16
1369 1427 7.211573 TCATTCAACCGTCTTCTTACTTGTTA 58.788 34.615 0.00 0.00 0.00 2.41
1370 1428 6.833342 TTCAACCGTCTTCTTACTTGTTAC 57.167 37.500 0.00 0.00 0.00 2.50
1394 1452 7.250569 ACTGTATATTTGCATGCTGTACAAAC 58.749 34.615 20.33 9.53 36.22 2.93
1396 1454 7.597386 TGTATATTTGCATGCTGTACAAACAA 58.403 30.769 20.33 3.36 36.22 2.83
1400 1458 5.703978 TTGCATGCTGTACAAACAATAGT 57.296 34.783 20.33 0.00 34.49 2.12
1401 1459 5.703978 TGCATGCTGTACAAACAATAGTT 57.296 34.783 20.33 0.00 40.40 2.24
1402 1460 5.459768 TGCATGCTGTACAAACAATAGTTG 58.540 37.500 20.33 0.00 38.17 3.16
1407 1465 7.208225 TGCTGTACAAACAATAGTTGCATTA 57.792 32.000 0.00 0.00 38.17 1.90
1460 1522 6.694411 GCTGAATGCTATGTATCTTTTGTTGG 59.306 38.462 0.00 0.00 38.95 3.77
1467 1535 9.674068 TGCTATGTATCTTTTGTTGGTATGTTA 57.326 29.630 0.00 0.00 0.00 2.41
1474 1542 6.966021 TCTTTTGTTGGTATGTTACTGCTTC 58.034 36.000 0.00 0.00 0.00 3.86
1483 1551 5.753921 GGTATGTTACTGCTTCTATGACCAC 59.246 44.000 0.00 0.00 0.00 4.16
1491 1559 3.019564 GCTTCTATGACCACTTGGCAAT 58.980 45.455 0.00 0.00 39.32 3.56
1647 1715 6.044682 GCAACTGATAATGCTAAAAGGCAAT 58.955 36.000 0.00 0.00 45.68 3.56
1666 1734 0.478072 TTGCAGCCTTCTTCCCTCAA 59.522 50.000 0.00 0.00 0.00 3.02
1672 1740 3.005155 CAGCCTTCTTCCCTCAACAAAAG 59.995 47.826 0.00 0.00 0.00 2.27
1690 1758 5.535030 ACAAAAGTTTGGATCCTGAAGGTAC 59.465 40.000 14.23 0.86 42.34 3.34
1743 1811 1.071471 CAACTGGCACCGGAGAAGT 59.929 57.895 9.46 4.99 0.00 3.01
1765 1833 7.765695 AGTCAATCAACACATACCTGATTTT 57.234 32.000 0.00 0.00 37.63 1.82
1860 1930 1.369091 CTTGTGCCGCCATAGTCCAC 61.369 60.000 0.00 0.00 0.00 4.02
1894 1964 9.453572 TGCAAAGTGAAGAACTATTATCTGAAT 57.546 29.630 0.00 0.00 38.56 2.57
1969 2039 2.871096 AGAGGTAAATGAACCGCCAA 57.129 45.000 0.00 0.00 44.77 4.52
1976 2046 1.244019 AATGAACCGCCAACCAGCTC 61.244 55.000 0.00 0.00 0.00 4.09
1997 2067 9.474920 CAGCTCAGATCTTTATAAGAGTAAAGG 57.525 37.037 0.00 0.00 41.61 3.11
2113 2186 4.728772 TCCAGTTGGATTGATTGTCAAGT 58.271 39.130 0.00 0.00 40.05 3.16
2127 2200 2.158623 TGTCAAGTCACTGGCTCCAAAT 60.159 45.455 0.00 0.00 0.00 2.32
2129 2202 3.686726 GTCAAGTCACTGGCTCCAAATAG 59.313 47.826 0.00 0.00 0.00 1.73
2213 2286 5.292589 CCTTATTGGCAATGCTTGAAACATC 59.707 40.000 22.57 0.00 0.00 3.06
2281 2358 0.322816 AGGACTGCCGTTTGATGCAT 60.323 50.000 0.00 0.00 39.96 3.96
2282 2359 0.527565 GGACTGCCGTTTGATGCATT 59.472 50.000 0.00 0.00 36.79 3.56
2348 2425 7.758980 CACAATAATAAACAGCCACTGCAATTA 59.241 33.333 0.00 0.00 41.13 1.40
2388 2466 9.369904 GGTATGAACATTATTTTTGCAGATTGT 57.630 29.630 0.00 0.00 0.00 2.71
2460 2538 8.943594 AAATACAAGGACACAAAAATAGGGTA 57.056 30.769 0.00 0.00 0.00 3.69
2543 2621 5.465935 GCCATCGGTTTTGATCTTTACAAA 58.534 37.500 0.00 0.00 35.81 2.83
2639 2717 9.011095 ACTTTGTTTTCCTTCCTACTTTATAGC 57.989 33.333 0.00 0.00 0.00 2.97
2834 2915 0.934496 CGTACTTGGTGTGTGTGTGG 59.066 55.000 0.00 0.00 0.00 4.17
2835 2916 0.661020 GTACTTGGTGTGTGTGTGGC 59.339 55.000 0.00 0.00 0.00 5.01
2836 2917 0.464735 TACTTGGTGTGTGTGTGGCC 60.465 55.000 0.00 0.00 0.00 5.36
3170 3254 1.342174 TGTCGTCACAGGAAGTAACCC 59.658 52.381 0.00 0.00 0.00 4.11
3175 3259 1.909781 ACAGGAAGTAACCCCGCGA 60.910 57.895 8.23 0.00 0.00 5.87
3191 3275 3.202906 CCGCGATAGGAAATTGGAAAGA 58.797 45.455 8.23 0.00 0.00 2.52
3192 3276 3.248602 CCGCGATAGGAAATTGGAAAGAG 59.751 47.826 8.23 0.00 0.00 2.85
3201 3285 5.072193 AGGAAATTGGAAAGAGCAAAATGGT 59.928 36.000 0.00 0.00 0.00 3.55
3402 3486 4.345257 TCAAGTTAGTGAAGCAGGAGTCTT 59.655 41.667 0.00 0.00 0.00 3.01
3415 3499 4.083057 GCAGGAGTCTTTTCATTGGAGTTC 60.083 45.833 0.00 0.00 0.00 3.01
3527 3611 6.261603 GTCTGCATTCATAATGAGTCATCCAA 59.738 38.462 5.98 0.00 41.46 3.53
3530 3614 8.873186 TGCATTCATAATGAGTCATCCAATAT 57.127 30.769 5.98 0.00 41.46 1.28
3663 3747 0.537188 CAGATAGAACCCTGCCACGT 59.463 55.000 0.00 0.00 0.00 4.49
3720 3804 3.926821 TCATACACAACTAGCGTGTCA 57.073 42.857 18.88 8.84 44.11 3.58
4136 4220 7.630082 TCCAGCAGATGTTAAGGTATAACTTT 58.370 34.615 8.65 0.00 32.02 2.66
4147 4231 8.785946 GTTAAGGTATAACTTTGTGTGCCTTTA 58.214 33.333 8.65 0.00 36.59 1.85
4178 4262 7.683437 ACTTTTATACTAGTCTGTTTTGGCC 57.317 36.000 0.00 0.00 0.00 5.36
4213 4297 7.549842 CACTGATCTCTTCAATTCTGAATCACT 59.450 37.037 2.92 0.00 40.78 3.41
4233 4317 6.001460 TCACTTGATCCGGTACTCAATTTTT 58.999 36.000 14.24 1.88 31.39 1.94
4348 4432 5.997129 TCTGTCATCACTGCAAATGTAAAGA 59.003 36.000 0.00 0.00 0.00 2.52
4556 4640 1.313091 ACGTCGACTATGAGGCAGCA 61.313 55.000 14.70 0.00 0.00 4.41
4885 4969 7.450124 AATCTCATATTTCCTGCATAGCTTG 57.550 36.000 0.00 0.00 0.00 4.01
4963 5051 5.679906 CGCATATGGAAAATACACAGCTAC 58.320 41.667 4.56 0.00 0.00 3.58
4965 5053 6.017934 CGCATATGGAAAATACACAGCTACTT 60.018 38.462 4.56 0.00 0.00 2.24
5169 5257 9.094578 TCATTCCCTCCTTATTAGTTATCAGAG 57.905 37.037 0.00 0.00 0.00 3.35
5176 5264 5.931146 CCTTATTAGTTATCAGAGGCAGCTG 59.069 44.000 10.11 10.11 37.24 4.24
5241 5329 5.250774 ACCTATTGGTGTTGATAGGAACAGT 59.749 40.000 14.51 0.00 46.51 3.55
5257 5345 4.080526 GGAACAGTGTGGATACTTGGGTAT 60.081 45.833 0.00 0.00 40.91 2.73
5416 5506 4.091509 GTCTGACACAGGTTATTAACAGCG 59.908 45.833 8.73 0.00 31.51 5.18
5449 5539 1.053835 TTCCCTGTCTGGCAGTCACA 61.054 55.000 15.27 11.47 43.55 3.58
5578 5681 0.330604 ATCATGCTGCCACAGGTCTT 59.669 50.000 0.00 0.00 31.21 3.01
5618 5721 6.183361 ACCTTCAATTCCTCTTAGTCAGGTTT 60.183 38.462 0.00 0.00 32.20 3.27
5803 5947 3.486383 ACCATGTTCAAACCGATGTTCT 58.514 40.909 0.00 0.00 32.15 3.01
5816 5960 4.582656 ACCGATGTTCTGGAATTGTTTCAA 59.417 37.500 0.00 0.00 33.23 2.69
5855 6000 4.034858 CAGCAGCATGACGTTTCTATCATT 59.965 41.667 0.00 0.00 39.69 2.57
6081 6226 7.707624 ATTTCTCAATCTAAGGCATGTGAAA 57.292 32.000 0.00 0.00 38.69 2.69
6192 6337 3.963665 TGCAACACCGAGAAAAAGATTG 58.036 40.909 0.00 0.00 0.00 2.67
6201 6346 6.142320 CACCGAGAAAAAGATTGTTACAAAGC 59.858 38.462 0.66 0.00 0.00 3.51
6253 6398 4.564769 GCTGGAGAAAGAAGACAGTATTCG 59.435 45.833 2.24 0.00 0.00 3.34
6316 6461 1.350193 GTGCACACACTGTATCCTCG 58.650 55.000 13.17 0.00 43.85 4.63
6347 6492 5.576563 TTTTTCTCCTAACATCCACCTCA 57.423 39.130 0.00 0.00 0.00 3.86
6441 6588 7.068593 CAGAATATAGTCCTCATCAGAGATCCC 59.931 44.444 0.00 0.00 44.98 3.85
6468 6615 1.483415 TCCACAAAGTACTATCCCCGC 59.517 52.381 0.00 0.00 0.00 6.13
6571 6718 7.509546 TCTGGTTGATCTGTAAAGTTTCTTCT 58.490 34.615 0.00 0.00 0.00 2.85
6617 6764 0.105964 AGTGCAACAGACTAACGGCA 59.894 50.000 0.00 0.00 41.43 5.69
6639 6786 6.459985 GGCATATGAGCATTGTGATGTTGTAA 60.460 38.462 6.97 0.00 35.63 2.41
6640 6787 6.415867 GCATATGAGCATTGTGATGTTGTAAC 59.584 38.462 6.97 0.00 35.63 2.50
6641 6788 4.764679 TGAGCATTGTGATGTTGTAACC 57.235 40.909 0.00 0.00 35.63 2.85
6642 6789 4.397420 TGAGCATTGTGATGTTGTAACCT 58.603 39.130 0.00 0.00 35.63 3.50
6644 6791 3.507233 AGCATTGTGATGTTGTAACCTGG 59.493 43.478 0.00 0.00 35.63 4.45
6645 6792 3.505680 GCATTGTGATGTTGTAACCTGGA 59.494 43.478 0.00 0.00 35.63 3.86
6646 6793 4.022416 GCATTGTGATGTTGTAACCTGGAA 60.022 41.667 0.00 0.00 35.63 3.53
6647 6794 5.702865 CATTGTGATGTTGTAACCTGGAAG 58.297 41.667 0.00 0.00 0.00 3.46
6648 6795 4.698201 TGTGATGTTGTAACCTGGAAGA 57.302 40.909 0.00 0.00 34.07 2.87
6649 6796 5.241403 TGTGATGTTGTAACCTGGAAGAT 57.759 39.130 0.00 0.00 34.07 2.40
6650 6797 6.367374 TGTGATGTTGTAACCTGGAAGATA 57.633 37.500 0.00 0.00 34.07 1.98
6651 6798 6.170506 TGTGATGTTGTAACCTGGAAGATAC 58.829 40.000 0.00 0.00 34.07 2.24
6652 6799 6.013725 TGTGATGTTGTAACCTGGAAGATACT 60.014 38.462 0.00 0.00 34.07 2.12
6653 6800 6.879458 GTGATGTTGTAACCTGGAAGATACTT 59.121 38.462 0.00 0.00 34.07 2.24
6654 6801 7.064728 GTGATGTTGTAACCTGGAAGATACTTC 59.935 40.741 0.00 0.00 34.07 3.01
6991 7228 6.948886 ACTGAAGACTCTACCTGTTCTATTGA 59.051 38.462 0.00 0.00 0.00 2.57
7071 7308 1.952296 CCTGTATGGCATCTTTCCTGC 59.048 52.381 1.65 0.00 38.93 4.85
7157 7394 2.693591 TCCAGGTTATGCTAGAACTCGG 59.306 50.000 0.00 0.00 0.00 4.63
7252 7489 4.630069 GCTATATGACGGTGTGTTTCACTT 59.370 41.667 1.72 0.00 45.50 3.16
7612 7849 4.499357 CGCTACAGGTATAGGACTTCAACC 60.499 50.000 0.00 0.00 0.00 3.77
7646 7883 5.630121 AGTCCATCCAGTAAAAACATGTCA 58.370 37.500 0.00 0.00 0.00 3.58
7931 8168 0.179111 TTTACCAGGATCTGCTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
7982 8219 1.136057 GCGGAGGAAACAATCAACGAC 60.136 52.381 0.00 0.00 0.00 4.34
8016 8253 3.480470 AGGCATTATTGGAGATTCCGTG 58.520 45.455 0.00 0.00 40.17 4.94
8021 8258 5.504665 GCATTATTGGAGATTCCGTGAGTTG 60.505 44.000 0.00 0.00 40.17 3.16
8022 8259 3.703001 ATTGGAGATTCCGTGAGTTGT 57.297 42.857 0.00 0.00 40.17 3.32
8126 8382 6.756542 AGGTTGAAACATTTTTACAGTTCAGC 59.243 34.615 0.00 0.00 0.00 4.26
8129 8385 9.243637 GTTGAAACATTTTTACAGTTCAGCATA 57.756 29.630 0.00 0.00 0.00 3.14
8133 8389 8.746922 AACATTTTTACAGTTCAGCATATGTG 57.253 30.769 4.29 2.04 0.00 3.21
8197 8453 3.941188 CACTGGAGGTGGCACGGT 61.941 66.667 12.17 0.41 41.90 4.83
8276 8532 2.035576 AGACGAATAGATAACACCCGGC 59.964 50.000 0.00 0.00 0.00 6.13
8383 8639 4.380444 GCGATTTGTGTTCCCATTGTGTAT 60.380 41.667 0.00 0.00 0.00 2.29
8384 8640 5.163703 GCGATTTGTGTTCCCATTGTGTATA 60.164 40.000 0.00 0.00 0.00 1.47
8385 8641 6.255215 CGATTTGTGTTCCCATTGTGTATAC 58.745 40.000 0.00 0.00 0.00 1.47
8404 8660 3.724732 ACTATTTAACCCCGGAAAGCA 57.275 42.857 0.73 0.00 0.00 3.91
8449 9017 8.792830 TCTAACTTCTTCTCCCAAAATACATG 57.207 34.615 0.00 0.00 0.00 3.21
8469 9037 2.768492 GCTGCAGGCCTACATGTGC 61.768 63.158 17.12 4.91 36.42 4.57
8790 9453 2.357517 CGCCGTCTTGCCTTCACT 60.358 61.111 0.00 0.00 0.00 3.41
8798 9461 3.547468 CGTCTTGCCTTCACTTGTTTTTG 59.453 43.478 0.00 0.00 0.00 2.44
8804 9467 4.693095 TGCCTTCACTTGTTTTTGTTTTCC 59.307 37.500 0.00 0.00 0.00 3.13
8814 9477 4.025145 TGTTTTTGTTTTCCGCGTGTTTTT 60.025 33.333 4.92 0.00 0.00 1.94
8897 9724 5.368256 TTTCATTTGCTCTTTGCTCTCTC 57.632 39.130 0.00 0.00 43.37 3.20
8966 9793 2.667137 GTGACCTCTGAAGTCTGAACG 58.333 52.381 7.83 0.00 35.21 3.95
9070 9899 7.123098 TGCATCATGGCCCTTTATTATTCTATG 59.877 37.037 0.00 0.00 0.00 2.23
9132 9963 3.205338 TGTACCAGATGCCAATTCATCG 58.795 45.455 2.44 0.00 45.57 3.84
9190 10021 0.179081 GGTTAGGGTCGCACTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
9199 10030 1.297689 GCACTCATCCTGCCTGTGA 59.702 57.895 0.00 0.00 0.00 3.58
9216 10047 0.179009 TGAGATAAGCATGGCTGGCC 60.179 55.000 4.43 4.43 39.62 5.36
9217 10048 1.228063 AGATAAGCATGGCTGGCCG 60.228 57.895 7.14 0.00 39.62 6.13
9218 10049 1.526917 GATAAGCATGGCTGGCCGT 60.527 57.895 7.14 3.63 39.62 5.68
9264 10099 2.203139 TTCCATACCGGCATGGCG 60.203 61.111 32.59 32.59 44.47 5.69
9337 10175 2.190578 GCGGCAGCACTAGGGATT 59.809 61.111 3.18 0.00 44.35 3.01
9338 10176 1.889573 GCGGCAGCACTAGGGATTC 60.890 63.158 3.18 0.00 44.35 2.52
9339 10177 1.826024 CGGCAGCACTAGGGATTCT 59.174 57.895 0.00 0.00 0.00 2.40
9343 10181 2.036604 GGCAGCACTAGGGATTCTACTC 59.963 54.545 0.00 0.00 0.00 2.59
9372 10210 4.582656 TGACTTTTATTTGTGGACAGGTGG 59.417 41.667 0.00 0.00 0.00 4.61
9373 10211 3.320826 ACTTTTATTTGTGGACAGGTGGC 59.679 43.478 0.00 0.00 0.00 5.01
9374 10212 1.529226 TTATTTGTGGACAGGTGGCG 58.471 50.000 0.00 0.00 0.00 5.69
9375 10213 0.398696 TATTTGTGGACAGGTGGCGT 59.601 50.000 0.00 0.00 0.00 5.68
9376 10214 1.172180 ATTTGTGGACAGGTGGCGTG 61.172 55.000 0.00 0.00 0.00 5.34
9427 10265 5.037385 GGCAACAGAGAAAACTTCAGAAAC 58.963 41.667 0.00 0.00 0.00 2.78
9492 10332 0.671781 CAAGCACTTGTCCGGAGAGG 60.672 60.000 3.06 6.84 42.97 3.69
9497 10337 3.649277 CTTGTCCGGAGAGGCGTGG 62.649 68.421 3.06 0.00 40.77 4.94
9508 10348 4.534401 GGCGTGGCCTAAACTAGG 57.466 61.111 3.32 0.00 46.69 3.02
9522 10362 6.952773 CTAAACTAGGATGTAGTGCTCTCT 57.047 41.667 0.00 0.00 0.00 3.10
9524 10364 8.630054 CTAAACTAGGATGTAGTGCTCTCTAT 57.370 38.462 0.00 0.00 0.00 1.98
9525 10365 9.727859 CTAAACTAGGATGTAGTGCTCTCTATA 57.272 37.037 0.00 0.00 0.00 1.31
9526 10366 8.630054 AAACTAGGATGTAGTGCTCTCTATAG 57.370 38.462 0.00 0.00 0.00 1.31
9527 10367 7.324388 ACTAGGATGTAGTGCTCTCTATAGT 57.676 40.000 0.00 0.00 0.00 2.12
9528 10368 8.438618 ACTAGGATGTAGTGCTCTCTATAGTA 57.561 38.462 0.00 0.00 0.00 1.82
9529 10369 9.053472 ACTAGGATGTAGTGCTCTCTATAGTAT 57.947 37.037 0.00 0.00 0.00 2.12
9530 10370 9.542462 CTAGGATGTAGTGCTCTCTATAGTATC 57.458 40.741 0.00 0.00 0.00 2.24
9531 10371 7.923461 AGGATGTAGTGCTCTCTATAGTATCA 58.077 38.462 0.00 0.00 0.00 2.15
9532 10372 7.827236 AGGATGTAGTGCTCTCTATAGTATCAC 59.173 40.741 0.00 4.72 0.00 3.06
9533 10373 7.827236 GGATGTAGTGCTCTCTATAGTATCACT 59.173 40.741 17.03 17.03 37.17 3.41
9534 10374 9.878667 GATGTAGTGCTCTCTATAGTATCACTA 57.121 37.037 15.74 15.74 35.31 2.74
9535 10375 9.884636 ATGTAGTGCTCTCTATAGTATCACTAG 57.115 37.037 18.07 0.00 36.58 2.57
9536 10376 8.872134 TGTAGTGCTCTCTATAGTATCACTAGT 58.128 37.037 18.07 0.00 36.58 2.57
9537 10377 9.715121 GTAGTGCTCTCTATAGTATCACTAGTT 57.285 37.037 18.07 0.00 36.58 2.24
9546 10386 8.737175 TCTATAGTATCACTAGTTAATTGCCCG 58.263 37.037 0.00 0.00 33.66 6.13
9547 10387 5.609533 AGTATCACTAGTTAATTGCCCGT 57.390 39.130 0.00 0.00 0.00 5.28
9548 10388 5.357257 AGTATCACTAGTTAATTGCCCGTG 58.643 41.667 0.00 0.00 0.00 4.94
9549 10389 2.980568 TCACTAGTTAATTGCCCGTGG 58.019 47.619 0.00 0.00 0.00 4.94
9550 10390 2.014128 CACTAGTTAATTGCCCGTGGG 58.986 52.381 0.00 0.00 38.57 4.61
9551 10391 1.631898 ACTAGTTAATTGCCCGTGGGT 59.368 47.619 6.82 0.00 37.65 4.51
9552 10392 2.040679 ACTAGTTAATTGCCCGTGGGTT 59.959 45.455 6.82 0.00 37.65 4.11
9553 10393 1.253100 AGTTAATTGCCCGTGGGTTG 58.747 50.000 6.82 0.00 37.65 3.77
9554 10394 0.389296 GTTAATTGCCCGTGGGTTGC 60.389 55.000 6.82 0.00 37.65 4.17
9555 10395 0.827925 TTAATTGCCCGTGGGTTGCA 60.828 50.000 6.82 0.00 37.65 4.08
9557 10397 2.522923 TTGCCCGTGGGTTGCAAT 60.523 55.556 0.59 0.00 39.86 3.56
9558 10398 2.136878 TTGCCCGTGGGTTGCAATT 61.137 52.632 0.59 0.00 39.86 2.32
9559 10399 2.048316 GCCCGTGGGTTGCAATTG 60.048 61.111 0.59 0.00 37.65 2.32
9560 10400 2.866726 GCCCGTGGGTTGCAATTGT 61.867 57.895 0.59 0.00 37.65 2.71
9561 10401 1.006337 CCCGTGGGTTGCAATTGTG 60.006 57.895 0.59 0.00 0.00 3.33
9562 10402 1.006337 CCGTGGGTTGCAATTGTGG 60.006 57.895 0.59 0.00 0.00 4.17
9563 10403 1.664333 CGTGGGTTGCAATTGTGGC 60.664 57.895 0.59 0.00 0.00 5.01
9564 10404 1.301637 GTGGGTTGCAATTGTGGCC 60.302 57.895 0.59 0.00 0.00 5.36
9565 10405 1.763655 TGGGTTGCAATTGTGGCCA 60.764 52.632 0.00 0.00 0.00 5.36
9566 10406 1.004679 GGGTTGCAATTGTGGCCAG 60.005 57.895 5.11 0.00 0.00 4.85
9567 10407 1.747774 GGTTGCAATTGTGGCCAGT 59.252 52.632 5.11 0.00 0.00 4.00
9568 10408 0.106521 GGTTGCAATTGTGGCCAGTT 59.893 50.000 5.11 0.00 0.00 3.16
9569 10409 1.501169 GTTGCAATTGTGGCCAGTTC 58.499 50.000 5.11 0.00 0.00 3.01
9570 10410 1.117994 TTGCAATTGTGGCCAGTTCA 58.882 45.000 5.11 0.00 0.00 3.18
9571 10411 0.675083 TGCAATTGTGGCCAGTTCAG 59.325 50.000 5.11 0.00 0.00 3.02
9572 10412 0.668401 GCAATTGTGGCCAGTTCAGC 60.668 55.000 5.11 4.37 0.00 4.26
9573 10413 0.675083 CAATTGTGGCCAGTTCAGCA 59.325 50.000 5.11 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.137528 GCTGGGGAGGAGGTAGCTC 61.138 68.421 13.67 13.67 0.00 4.09
143 152 2.660802 GAACGCTTCTTCCCCGGA 59.339 61.111 0.73 0.00 0.00 5.14
202 212 1.600916 GCCTTTCTGGTCCGTTGCT 60.601 57.895 0.00 0.00 38.35 3.91
278 291 2.703798 TTAACGACGGAGGGCGAGG 61.704 63.158 0.00 0.00 33.86 4.63
279 292 1.515736 GTTAACGACGGAGGGCGAG 60.516 63.158 0.00 0.00 33.86 5.03
280 293 2.568090 GTTAACGACGGAGGGCGA 59.432 61.111 0.00 0.00 33.86 5.54
309 322 1.522569 GATGGTGAAGAGGACGGGG 59.477 63.158 0.00 0.00 0.00 5.73
313 326 1.065126 CCAAGGGATGGTGAAGAGGAC 60.065 57.143 0.00 0.00 44.85 3.85
314 327 1.289160 CCAAGGGATGGTGAAGAGGA 58.711 55.000 0.00 0.00 44.85 3.71
315 328 3.890527 CCAAGGGATGGTGAAGAGG 57.109 57.895 0.00 0.00 44.85 3.69
328 341 2.356667 GGGGAGAAGGTGCCAAGG 59.643 66.667 0.00 0.00 38.84 3.61
347 360 0.534652 GAGAGCATGGATGGAGGCAC 60.535 60.000 0.00 0.00 0.00 5.01
348 361 0.984432 TGAGAGCATGGATGGAGGCA 60.984 55.000 0.00 0.00 0.00 4.75
349 362 0.534652 GTGAGAGCATGGATGGAGGC 60.535 60.000 0.00 0.00 0.00 4.70
351 364 2.036217 GAGAGTGAGAGCATGGATGGAG 59.964 54.545 0.00 0.00 0.00 3.86
352 365 2.037901 GAGAGTGAGAGCATGGATGGA 58.962 52.381 0.00 0.00 0.00 3.41
355 368 2.040939 CAGGAGAGTGAGAGCATGGAT 58.959 52.381 0.00 0.00 0.00 3.41
367 388 1.309688 GGAGGAGGCTCAGGAGAGT 59.690 63.158 17.69 0.00 44.00 3.24
397 418 4.570874 GGGGAGGGAATCAGCGGC 62.571 72.222 0.00 0.00 0.00 6.53
398 419 4.241555 CGGGGAGGGAATCAGCGG 62.242 72.222 0.00 0.00 0.00 5.52
400 421 2.506472 GACGGGGAGGGAATCAGC 59.494 66.667 0.00 0.00 0.00 4.26
401 422 2.797278 CGGACGGGGAGGGAATCAG 61.797 68.421 0.00 0.00 0.00 2.90
402 423 2.762459 CGGACGGGGAGGGAATCA 60.762 66.667 0.00 0.00 0.00 2.57
403 424 2.762875 ACGGACGGGGAGGGAATC 60.763 66.667 0.00 0.00 0.00 2.52
404 425 3.081409 CACGGACGGGGAGGGAAT 61.081 66.667 0.00 0.00 0.00 3.01
447 469 0.682852 CGGGTGAGGTTACCTTCACA 59.317 55.000 24.35 10.57 40.66 3.58
448 470 0.672711 GCGGGTGAGGTTACCTTCAC 60.673 60.000 18.88 18.88 40.66 3.18
449 471 0.834687 AGCGGGTGAGGTTACCTTCA 60.835 55.000 4.99 2.32 40.66 3.02
450 472 0.323957 AAGCGGGTGAGGTTACCTTC 59.676 55.000 4.99 2.12 40.66 3.46
459 481 2.685380 AGGGAGGAAGCGGGTGAG 60.685 66.667 0.00 0.00 0.00 3.51
460 482 2.683933 GAGGGAGGAAGCGGGTGA 60.684 66.667 0.00 0.00 0.00 4.02
461 483 3.787001 GGAGGGAGGAAGCGGGTG 61.787 72.222 0.00 0.00 0.00 4.61
462 484 3.986116 GAGGAGGGAGGAAGCGGGT 62.986 68.421 0.00 0.00 0.00 5.28
543 565 0.108615 AGGAACGAATCAGAGCACCG 60.109 55.000 0.00 0.00 0.00 4.94
563 593 1.226717 GTAGCTCAGAGGCGAACGG 60.227 63.158 0.00 0.00 37.29 4.44
693 737 7.773864 TTCGAGAATCAGTAGTACTCAGTAG 57.226 40.000 0.00 0.00 33.17 2.57
781 825 5.106712 CCGCACACTACTCATTGTTAAATGT 60.107 40.000 0.00 0.00 43.21 2.71
785 829 3.331150 CCCGCACACTACTCATTGTTAA 58.669 45.455 0.00 0.00 0.00 2.01
797 841 1.892819 CTCTGTGATCCCCGCACACT 61.893 60.000 0.00 0.00 41.00 3.55
798 842 1.448540 CTCTGTGATCCCCGCACAC 60.449 63.158 0.00 0.00 41.00 3.82
799 843 2.981302 CTCTGTGATCCCCGCACA 59.019 61.111 0.00 0.00 43.41 4.57
800 844 2.512515 GCTCTGTGATCCCCGCAC 60.513 66.667 0.00 0.00 36.81 5.34
801 845 3.785859 GGCTCTGTGATCCCCGCA 61.786 66.667 0.00 0.00 0.00 5.69
803 847 2.187946 GTGGCTCTGTGATCCCCG 59.812 66.667 0.00 0.00 0.00 5.73
805 849 2.592308 GGGTGGCTCTGTGATCCC 59.408 66.667 0.00 0.00 0.00 3.85
806 850 1.977293 GAGGGGTGGCTCTGTGATCC 61.977 65.000 0.00 0.00 0.00 3.36
807 851 1.524482 GAGGGGTGGCTCTGTGATC 59.476 63.158 0.00 0.00 0.00 2.92
808 852 1.997874 GGAGGGGTGGCTCTGTGAT 60.998 63.158 0.00 0.00 0.00 3.06
809 853 2.607750 GGAGGGGTGGCTCTGTGA 60.608 66.667 0.00 0.00 0.00 3.58
810 854 3.721706 GGGAGGGGTGGCTCTGTG 61.722 72.222 0.00 0.00 0.00 3.66
811 855 3.507143 AAGGGAGGGGTGGCTCTGT 62.507 63.158 0.00 0.00 0.00 3.41
812 856 2.612115 AAGGGAGGGGTGGCTCTG 60.612 66.667 0.00 0.00 0.00 3.35
813 857 2.612115 CAAGGGAGGGGTGGCTCT 60.612 66.667 0.00 0.00 0.00 4.09
814 858 3.732849 CCAAGGGAGGGGTGGCTC 61.733 72.222 0.00 0.00 0.00 4.70
815 859 3.603330 ATCCAAGGGAGGGGTGGCT 62.603 63.158 0.00 0.00 34.05 4.75
816 860 3.023735 ATCCAAGGGAGGGGTGGC 61.024 66.667 0.00 0.00 34.05 5.01
817 861 2.386935 GGATCCAAGGGAGGGGTGG 61.387 68.421 6.95 0.00 34.05 4.61
820 864 2.366972 ACGGATCCAAGGGAGGGG 60.367 66.667 13.41 0.00 34.05 4.79
823 867 1.486310 TGAATCACGGATCCAAGGGAG 59.514 52.381 13.41 0.00 34.05 4.30
849 893 2.524306 TGAATCCGCCATTTGTTCCTT 58.476 42.857 0.00 0.00 0.00 3.36
853 897 4.806640 AAGAATGAATCCGCCATTTGTT 57.193 36.364 0.00 0.00 34.67 2.83
877 921 3.078097 TCCGCCATTCAATCTCGAAAAA 58.922 40.909 0.00 0.00 0.00 1.94
878 922 2.705730 TCCGCCATTCAATCTCGAAAA 58.294 42.857 0.00 0.00 0.00 2.29
879 923 2.394930 TCCGCCATTCAATCTCGAAA 57.605 45.000 0.00 0.00 0.00 3.46
880 924 2.620251 ATCCGCCATTCAATCTCGAA 57.380 45.000 0.00 0.00 0.00 3.71
881 925 2.158971 TGAATCCGCCATTCAATCTCGA 60.159 45.455 5.74 0.00 46.68 4.04
882 926 2.212652 TGAATCCGCCATTCAATCTCG 58.787 47.619 5.74 0.00 46.68 4.04
889 933 3.607078 GCGTAAGAATGAATCCGCCATTC 60.607 47.826 0.00 0.00 46.16 2.67
904 948 6.874134 AGAAAAGAAGATTTGCTAGCGTAAGA 59.126 34.615 10.77 0.00 43.02 2.10
914 958 6.183360 TGGCAAACAAAGAAAAGAAGATTTGC 60.183 34.615 9.30 9.30 46.18 3.68
923 967 5.007823 TGCATCAATGGCAAACAAAGAAAAG 59.992 36.000 0.00 0.00 38.54 2.27
924 968 4.880120 TGCATCAATGGCAAACAAAGAAAA 59.120 33.333 0.00 0.00 38.54 2.29
925 969 4.449131 TGCATCAATGGCAAACAAAGAAA 58.551 34.783 0.00 0.00 38.54 2.52
926 970 4.069300 TGCATCAATGGCAAACAAAGAA 57.931 36.364 0.00 0.00 38.54 2.52
932 979 2.350498 GCTGAATGCATCAATGGCAAAC 59.650 45.455 0.00 0.00 45.60 2.93
971 1029 0.820891 ACAGGCAGGCAGAAACACAG 60.821 55.000 0.00 0.00 0.00 3.66
990 1048 3.006859 TCACTTTCGCCATCTCTTCAGAA 59.993 43.478 0.00 0.00 30.24 3.02
1042 1100 0.469331 ATGATGCTCTGCCCCCATTG 60.469 55.000 0.00 0.00 0.00 2.82
1057 1115 2.345244 GGAGCCGGCGATGATGAT 59.655 61.111 23.20 0.00 0.00 2.45
1114 1172 4.410400 GTGAACCGGGCTCAGGGG 62.410 72.222 6.32 0.00 0.00 4.79
1153 1211 2.396157 GGACTAAAACCTGGCCGCG 61.396 63.158 0.00 0.00 0.00 6.46
1166 1224 1.255667 GGTGAAGACAGCGGGGACTA 61.256 60.000 0.00 0.00 34.87 2.59
1234 1292 0.491823 TTCTTCTCCCCAGACTCCCA 59.508 55.000 0.00 0.00 0.00 4.37
1240 1298 2.334006 AGCTTCTTCTTCTCCCCAGA 57.666 50.000 0.00 0.00 0.00 3.86
1242 1300 2.834549 CACTAGCTTCTTCTTCTCCCCA 59.165 50.000 0.00 0.00 0.00 4.96
1325 1383 7.326454 TGAATGAACACATGGAAGTTTGAAAA 58.674 30.769 0.00 0.00 0.00 2.29
1326 1384 6.871844 TGAATGAACACATGGAAGTTTGAAA 58.128 32.000 0.00 0.00 0.00 2.69
1329 1387 5.463061 GGTTGAATGAACACATGGAAGTTTG 59.537 40.000 0.00 0.00 36.12 2.93
1362 1420 7.121168 ACAGCATGCAAATATACAGTAACAAGT 59.879 33.333 21.98 0.00 42.53 3.16
1367 1425 8.499403 TTGTACAGCATGCAAATATACAGTAA 57.501 30.769 21.98 3.57 42.53 2.24
1369 1427 7.094420 TGTTTGTACAGCATGCAAATATACAGT 60.094 33.333 21.98 6.28 43.62 3.55
1370 1428 7.249858 TGTTTGTACAGCATGCAAATATACAG 58.750 34.615 21.98 0.36 43.62 2.74
1384 1442 6.251376 GCTAATGCAACTATTGTTTGTACAGC 59.749 38.462 0.00 0.00 39.41 4.40
1402 1460 1.066605 CCTCATGGTTGCTGCTAATGC 59.933 52.381 0.00 0.00 40.20 3.56
1407 1465 0.329261 TAAGCCTCATGGTTGCTGCT 59.671 50.000 0.00 0.00 35.08 4.24
1460 1522 6.574350 AGTGGTCATAGAAGCAGTAACATAC 58.426 40.000 0.00 0.00 0.00 2.39
1467 1535 2.616510 GCCAAGTGGTCATAGAAGCAGT 60.617 50.000 0.00 0.00 37.57 4.40
1474 1542 2.098607 CAGCATTGCCAAGTGGTCATAG 59.901 50.000 4.70 0.00 37.57 2.23
1483 1551 0.592637 TGACGAACAGCATTGCCAAG 59.407 50.000 4.70 0.00 0.00 3.61
1491 1559 1.540267 GGACTAGTCTGACGAACAGCA 59.460 52.381 21.88 0.00 45.38 4.41
1552 1620 0.747255 ATCCTGAATCCAGACGACGG 59.253 55.000 0.00 0.00 43.02 4.79
1647 1715 0.478072 TTGAGGGAAGAAGGCTGCAA 59.522 50.000 0.50 0.00 0.00 4.08
1656 1724 4.605183 TCCAAACTTTTGTTGAGGGAAGA 58.395 39.130 1.21 0.00 42.67 2.87
1666 1734 4.546674 ACCTTCAGGATCCAAACTTTTGT 58.453 39.130 15.82 0.00 38.94 2.83
1672 1740 7.939784 AAAATAGTACCTTCAGGATCCAAAC 57.060 36.000 15.82 1.03 38.94 2.93
1860 1930 1.858458 TCTTCACTTTGCACGAACTCG 59.142 47.619 0.00 0.00 46.33 4.18
1894 1964 9.778741 GTATGGTTGTTTCCATTGATCTAGATA 57.221 33.333 4.89 0.00 44.75 1.98
1900 1970 5.331902 CACGTATGGTTGTTTCCATTGATC 58.668 41.667 3.55 0.00 44.75 2.92
1959 2029 2.281484 GAGCTGGTTGGCGGTTCA 60.281 61.111 0.00 0.00 37.29 3.18
1969 2039 8.540507 TTACTCTTATAAAGATCTGAGCTGGT 57.459 34.615 0.00 0.00 36.82 4.00
1997 2067 1.321074 ACACGGGCTCCTAGCAGTAC 61.321 60.000 0.78 0.00 44.75 2.73
2076 2148 6.422333 TCCAACTGGACTTGCATGATTATTA 58.578 36.000 6.60 0.00 39.78 0.98
2113 2186 5.222048 ACCTTTTACTATTTGGAGCCAGTGA 60.222 40.000 0.00 0.00 0.00 3.41
2127 2200 9.491675 TCAACAAATTACGATGACCTTTTACTA 57.508 29.630 0.00 0.00 0.00 1.82
2129 2202 9.113876 CTTCAACAAATTACGATGACCTTTTAC 57.886 33.333 0.00 0.00 0.00 2.01
2213 2286 3.891977 TCTTGATTCCTGTAGAGATCCCG 59.108 47.826 0.00 0.00 0.00 5.14
2258 2335 2.227865 GCATCAAACGGCAGTCCTAAAA 59.772 45.455 0.00 0.00 0.00 1.52
2281 2358 4.712829 TCGGACTATACCAACCATCAGAAA 59.287 41.667 0.00 0.00 0.00 2.52
2282 2359 4.283337 TCGGACTATACCAACCATCAGAA 58.717 43.478 0.00 0.00 0.00 3.02
2460 2538 0.676782 GCACCAAACGGCAGTCCTAT 60.677 55.000 0.00 0.00 0.00 2.57
2615 2693 8.927675 TGCTATAAAGTAGGAAGGAAAACAAA 57.072 30.769 0.00 0.00 0.00 2.83
2618 2696 9.788960 CAAATGCTATAAAGTAGGAAGGAAAAC 57.211 33.333 0.00 0.00 0.00 2.43
2639 2717 4.062293 TCACCTGGAACGTTCTACAAATG 58.938 43.478 26.32 16.32 0.00 2.32
2705 2786 8.475639 TCAGATACTCCATTGGTAAAGACTAAC 58.524 37.037 1.86 0.00 0.00 2.34
2834 2915 2.583143 AGGTAACAAACAAGTCCAGGC 58.417 47.619 0.00 0.00 41.41 4.85
2835 2916 3.951680 ACAAGGTAACAAACAAGTCCAGG 59.048 43.478 0.00 0.00 41.41 4.45
2836 2917 5.576447 AACAAGGTAACAAACAAGTCCAG 57.424 39.130 0.00 0.00 41.41 3.86
2940 3024 9.857656 ACAATATCTGTCCAACAAAGATCATAT 57.142 29.630 0.00 0.00 29.87 1.78
3026 3110 8.876790 AGCTTATAAACGGAAACATAAGTGTAC 58.123 33.333 0.00 0.00 37.67 2.90
3170 3254 3.202906 TCTTTCCAATTTCCTATCGCGG 58.797 45.455 6.13 0.00 0.00 6.46
3175 3259 7.038088 ACCATTTTGCTCTTTCCAATTTCCTAT 60.038 33.333 0.00 0.00 0.00 2.57
3191 3275 2.867624 TGAGCTTGAGACCATTTTGCT 58.132 42.857 0.00 0.00 0.00 3.91
3192 3276 3.005155 AGTTGAGCTTGAGACCATTTTGC 59.995 43.478 0.00 0.00 0.00 3.68
3201 3285 4.528206 TCTCCAACATAGTTGAGCTTGAGA 59.472 41.667 11.19 10.45 0.00 3.27
3402 3486 0.111446 TGGGCCGAACTCCAATGAAA 59.889 50.000 0.00 0.00 0.00 2.69
3415 3499 1.073199 AACCTCTCTGTTTGGGCCG 59.927 57.895 0.00 0.00 0.00 6.13
3707 3791 7.488150 TGATAAATTAGTCTGACACGCTAGTTG 59.512 37.037 10.88 0.00 0.00 3.16
3708 3792 7.544622 TGATAAATTAGTCTGACACGCTAGTT 58.455 34.615 10.88 0.00 0.00 2.24
4033 4117 6.147164 CGGAGAGTGAGCTGTAAATAAAAACA 59.853 38.462 0.00 0.00 0.00 2.83
4037 4121 5.401531 ACGGAGAGTGAGCTGTAAATAAA 57.598 39.130 0.00 0.00 0.00 1.40
4157 4241 7.253905 AGAGGCCAAAACAGACTAGTATAAA 57.746 36.000 5.01 0.00 0.00 1.40
4178 4262 5.053140 TGAAGAGATCAGTGAAACGAGAG 57.947 43.478 0.00 0.00 45.86 3.20
4213 4297 8.746052 ATATGAAAAATTGAGTACCGGATCAA 57.254 30.769 9.46 15.89 39.59 2.57
4233 4317 6.758416 CGAAATCTCTTCCTGTGACAATATGA 59.242 38.462 0.00 0.00 0.00 2.15
4385 4469 1.601412 GCAAAAGAGCAGCAAGGACAC 60.601 52.381 0.00 0.00 0.00 3.67
4464 4548 3.054948 CCATTTGGGTTCCATGAGCAAAT 60.055 43.478 0.00 0.00 31.53 2.32
4556 4640 2.270352 TTCTGAGTTTCGTGGCCAAT 57.730 45.000 7.24 0.00 0.00 3.16
4589 4673 9.529325 AGCACTTTGTCCTTTTCTAAATTAAAC 57.471 29.630 0.00 0.00 0.00 2.01
5031 5119 9.239551 ACATAGTAGTGGAAGCGTATAATATCA 57.760 33.333 0.00 0.00 0.00 2.15
5176 5264 3.445096 ACCTTGTTCTTCCTTGCATATGC 59.555 43.478 21.09 21.09 42.50 3.14
5257 5345 7.604927 GGTATTCATGCGAAATAATGTAGGGTA 59.395 37.037 0.00 0.00 34.01 3.69
5449 5539 4.441079 GCAGATGAGTAATGGCAAGCAAAT 60.441 41.667 0.00 0.00 0.00 2.32
5578 5681 8.147704 GGAATTGAAGGTCTAAATTTTCCACAA 58.852 33.333 0.00 8.35 32.32 3.33
5803 5947 7.454380 ACCCTCATCTTTATTGAAACAATTCCA 59.546 33.333 2.40 0.00 34.49 3.53
5816 5960 1.565759 TGCTGGCACCCTCATCTTTAT 59.434 47.619 0.00 0.00 0.00 1.40
5855 6000 6.192970 AGAGATCCAAACTTCTCCTGAAAA 57.807 37.500 0.00 0.00 39.36 2.29
6081 6226 7.603784 GGCATGTAAAAGAACATCAGGAAAAAT 59.396 33.333 0.00 0.00 38.01 1.82
6192 6337 5.064325 CGGGACTGGTATTAAGCTTTGTAAC 59.936 44.000 3.20 1.33 0.00 2.50
6201 6346 6.598064 AGTGATTTTTCGGGACTGGTATTAAG 59.402 38.462 0.00 0.00 0.00 1.85
6206 6351 3.581332 AGAGTGATTTTTCGGGACTGGTA 59.419 43.478 0.00 0.00 0.00 3.25
6253 6398 0.389948 AAGATCGAACAGACCACGCC 60.390 55.000 0.00 0.00 0.00 5.68
6441 6588 4.202030 GGATAGTACTTTGTGGAGTCCTCG 60.202 50.000 11.33 0.00 0.00 4.63
6468 6615 8.622948 AACTTGAAGTATCTTCCAGGTTAAAG 57.377 34.615 0.00 8.03 29.08 1.85
6617 6764 6.830324 AGGTTACAACATCACAATGCTCATAT 59.170 34.615 0.00 0.00 36.26 1.78
6639 6786 9.981460 AGATAAAAATTGAAGTATCTTCCAGGT 57.019 29.630 6.98 0.00 30.79 4.00
6651 6798 9.214953 GCAGTACGATGAAGATAAAAATTGAAG 57.785 33.333 0.00 0.00 0.00 3.02
6652 6799 8.946085 AGCAGTACGATGAAGATAAAAATTGAA 58.054 29.630 0.00 0.00 0.00 2.69
6653 6800 8.492673 AGCAGTACGATGAAGATAAAAATTGA 57.507 30.769 0.00 0.00 0.00 2.57
6784 6931 6.524101 AAGCAAGAAACTAAAGTTGGTTGA 57.476 33.333 16.18 0.00 38.74 3.18
6991 7228 3.066291 TGCCAACATATCCGAACAGTT 57.934 42.857 0.00 0.00 0.00 3.16
7369 7606 7.104043 AGGTCATCCAACACAATTTATCATG 57.896 36.000 0.00 0.00 35.89 3.07
7617 7854 9.559732 CATGTTTTTACTGGATGGACTATATGA 57.440 33.333 0.00 0.00 0.00 2.15
7624 7861 5.957842 TGACATGTTTTTACTGGATGGAC 57.042 39.130 0.00 0.00 0.00 4.02
7646 7883 9.791801 AAAGTTTAGCCAAAATTATGTCCAAAT 57.208 25.926 0.00 0.00 31.09 2.32
7851 8088 3.965470 AAACCCAATCATAGTACCCCC 57.035 47.619 0.00 0.00 0.00 5.40
7852 8089 6.664384 TGTTAAAAACCCAATCATAGTACCCC 59.336 38.462 0.00 0.00 0.00 4.95
7853 8090 7.612633 TCTGTTAAAAACCCAATCATAGTACCC 59.387 37.037 0.00 0.00 0.00 3.69
7854 8091 8.570068 TCTGTTAAAAACCCAATCATAGTACC 57.430 34.615 0.00 0.00 0.00 3.34
7899 8136 3.073946 TCCTGGTAAAGAAGAAACCCCAG 59.926 47.826 0.00 0.00 38.15 4.45
7931 8168 2.225491 TGCGGTGTATTTGTCTTTCAGC 59.775 45.455 0.00 0.00 0.00 4.26
7982 8219 1.921869 AATGCCTCGGGTTAGTGGGG 61.922 60.000 0.00 0.00 0.00 4.96
8126 8382 0.380733 CACAGGCAGCAGCACATATG 59.619 55.000 2.65 0.00 44.61 1.78
8129 8385 1.970114 GACACAGGCAGCAGCACAT 60.970 57.895 2.65 0.00 44.61 3.21
8133 8389 0.321122 AAGTAGACACAGGCAGCAGC 60.321 55.000 0.00 0.00 41.10 5.25
8135 8391 2.289444 GGTTAAGTAGACACAGGCAGCA 60.289 50.000 0.00 0.00 0.00 4.41
8136 8392 2.289444 TGGTTAAGTAGACACAGGCAGC 60.289 50.000 0.00 0.00 0.00 5.25
8142 8398 6.429692 CCACATCAAATGGTTAAGTAGACACA 59.570 38.462 0.00 0.00 32.08 3.72
8197 8453 5.194740 TGTCCCCAGATATTAAATTGGTCCA 59.805 40.000 0.00 0.00 0.00 4.02
8383 8639 4.840716 TGCTTTCCGGGGTTAAATAGTA 57.159 40.909 0.00 0.00 0.00 1.82
8384 8640 3.724732 TGCTTTCCGGGGTTAAATAGT 57.275 42.857 0.00 0.00 0.00 2.12
8385 8641 6.238648 AGATATGCTTTCCGGGGTTAAATAG 58.761 40.000 0.00 0.00 0.00 1.73
8449 9017 1.377725 ACATGTAGGCCTGCAGCAC 60.378 57.895 27.96 12.63 46.50 4.40
8635 9255 2.202236 ATCAGCTCAACGGGCATGGT 62.202 55.000 0.00 0.00 0.00 3.55
8790 9453 2.673833 ACACGCGGAAAACAAAAACAA 58.326 38.095 12.47 0.00 0.00 2.83
8814 9477 4.143986 TGGATCACACACACACAAGTAA 57.856 40.909 0.00 0.00 0.00 2.24
8820 9567 0.593128 GCCTTGGATCACACACACAC 59.407 55.000 0.00 0.00 0.00 3.82
8833 9580 0.040204 ACTCCATTTCAGGGCCTTGG 59.960 55.000 15.86 14.74 0.00 3.61
8923 9750 7.228906 TCACGGTTCACAACAGGATTATAAAAA 59.771 33.333 0.00 0.00 0.00 1.94
8934 9761 1.202533 AGAGGTCACGGTTCACAACAG 60.203 52.381 0.00 0.00 0.00 3.16
8966 9793 1.383523 GCATCTTAGCCAGAACCCAC 58.616 55.000 0.00 0.00 34.16 4.61
9011 9838 4.348656 GTGACGTTTCTGTTTTCCCTTTC 58.651 43.478 0.00 0.00 0.00 2.62
9084 9915 8.847196 ACCTAACTAAACCTAAGCTTCAAAAAG 58.153 33.333 0.00 0.00 35.47 2.27
9085 9916 8.756486 ACCTAACTAAACCTAAGCTTCAAAAA 57.244 30.769 0.00 0.00 0.00 1.94
9132 9963 4.976116 ACACTTTTCGCTAAATGTTTCAGC 59.024 37.500 0.15 0.00 32.33 4.26
9190 10021 2.219458 CCATGCTTATCTCACAGGCAG 58.781 52.381 0.00 0.00 36.35 4.85
9199 10030 1.228063 CGGCCAGCCATGCTTATCT 60.228 57.895 9.78 0.00 36.40 1.98
9216 10047 6.664629 GTTAAACTAACTACGCACGGCACG 62.665 50.000 0.00 0.00 46.53 5.34
9217 10048 1.142474 AAACTAACTACGCACGGCAC 58.858 50.000 0.00 0.00 0.00 5.01
9218 10049 2.721274 TAAACTAACTACGCACGGCA 57.279 45.000 0.00 0.00 0.00 5.69
9219 10050 2.989166 AGTTAAACTAACTACGCACGGC 59.011 45.455 0.00 0.00 46.53 5.68
9220 10051 3.983344 ACAGTTAAACTAACTACGCACGG 59.017 43.478 0.00 0.00 46.66 4.94
9221 10052 5.387752 GGAACAGTTAAACTAACTACGCACG 60.388 44.000 0.00 0.00 46.66 5.34
9264 10099 2.648059 AGCAAGCAAGATCCACCATAC 58.352 47.619 0.00 0.00 0.00 2.39
9337 10175 9.653287 CACAAATAAAAGTCATGTAGGAGTAGA 57.347 33.333 0.00 0.00 0.00 2.59
9338 10176 8.883731 CCACAAATAAAAGTCATGTAGGAGTAG 58.116 37.037 0.00 0.00 0.00 2.57
9339 10177 8.598916 TCCACAAATAAAAGTCATGTAGGAGTA 58.401 33.333 0.00 0.00 0.00 2.59
9343 10181 7.362056 CCTGTCCACAAATAAAAGTCATGTAGG 60.362 40.741 0.00 0.00 0.00 3.18
9397 10235 5.596836 AGTTTTCTCTGTTGCCATCAAAA 57.403 34.783 0.00 0.00 33.37 2.44
9422 10260 4.900635 ACTTGCGTCAATTTCAGTTTCT 57.099 36.364 0.00 0.00 0.00 2.52
9427 10265 6.019479 GGATCTACTACTTGCGTCAATTTCAG 60.019 42.308 0.00 0.00 0.00 3.02
9492 10332 1.134491 ACATCCTAGTTTAGGCCACGC 60.134 52.381 5.01 0.00 45.82 5.34
9497 10337 4.342665 AGAGCACTACATCCTAGTTTAGGC 59.657 45.833 0.00 0.00 45.82 3.93
9502 10342 7.751646 ACTATAGAGAGCACTACATCCTAGTT 58.248 38.462 6.78 0.00 0.00 2.24
9503 10343 7.324388 ACTATAGAGAGCACTACATCCTAGT 57.676 40.000 6.78 0.00 0.00 2.57
9504 10344 9.542462 GATACTATAGAGAGCACTACATCCTAG 57.458 40.741 6.78 0.00 0.00 3.02
9505 10345 9.047947 TGATACTATAGAGAGCACTACATCCTA 57.952 37.037 6.78 0.00 0.00 2.94
9506 10346 7.827236 GTGATACTATAGAGAGCACTACATCCT 59.173 40.741 6.78 0.00 0.00 3.24
9507 10347 7.827236 AGTGATACTATAGAGAGCACTACATCC 59.173 40.741 20.97 1.85 33.42 3.51
9508 10348 8.786826 AGTGATACTATAGAGAGCACTACATC 57.213 38.462 20.97 2.37 33.42 3.06
9509 10349 9.884636 CTAGTGATACTATAGAGAGCACTACAT 57.115 37.037 22.33 10.53 35.30 2.29
9510 10350 8.872134 ACTAGTGATACTATAGAGAGCACTACA 58.128 37.037 22.33 12.76 35.30 2.74
9511 10351 9.715121 AACTAGTGATACTATAGAGAGCACTAC 57.285 37.037 22.33 7.21 35.30 2.73
9520 10360 8.737175 CGGGCAATTAACTAGTGATACTATAGA 58.263 37.037 6.78 0.00 29.08 1.98
9521 10361 8.521176 ACGGGCAATTAACTAGTGATACTATAG 58.479 37.037 0.00 0.00 29.08 1.31
9522 10362 8.301720 CACGGGCAATTAACTAGTGATACTATA 58.698 37.037 0.00 0.00 29.08 1.31
9523 10363 7.152645 CACGGGCAATTAACTAGTGATACTAT 58.847 38.462 0.00 0.00 29.08 2.12
9524 10364 6.461927 CCACGGGCAATTAACTAGTGATACTA 60.462 42.308 0.00 0.00 0.00 1.82
9525 10365 5.357257 CACGGGCAATTAACTAGTGATACT 58.643 41.667 0.00 0.00 0.00 2.12
9526 10366 4.510340 CCACGGGCAATTAACTAGTGATAC 59.490 45.833 0.00 0.00 0.00 2.24
9527 10367 4.443739 CCCACGGGCAATTAACTAGTGATA 60.444 45.833 0.00 0.00 0.00 2.15
9528 10368 3.541632 CCACGGGCAATTAACTAGTGAT 58.458 45.455 0.00 0.00 0.00 3.06
9529 10369 2.355310 CCCACGGGCAATTAACTAGTGA 60.355 50.000 0.00 0.00 0.00 3.41
9530 10370 2.014128 CCCACGGGCAATTAACTAGTG 58.986 52.381 0.00 0.00 0.00 2.74
9531 10371 1.631898 ACCCACGGGCAATTAACTAGT 59.368 47.619 0.69 0.00 39.32 2.57
9532 10372 2.413310 ACCCACGGGCAATTAACTAG 57.587 50.000 0.69 0.00 39.32 2.57
9533 10373 2.438411 CAACCCACGGGCAATTAACTA 58.562 47.619 0.69 0.00 39.32 2.24
9534 10374 1.253100 CAACCCACGGGCAATTAACT 58.747 50.000 0.69 0.00 39.32 2.24
9535 10375 0.389296 GCAACCCACGGGCAATTAAC 60.389 55.000 0.69 0.00 39.32 2.01
9536 10376 0.827925 TGCAACCCACGGGCAATTAA 60.828 50.000 0.69 0.00 39.32 1.40
9537 10377 0.827925 TTGCAACCCACGGGCAATTA 60.828 50.000 0.69 0.00 42.12 1.40
9538 10378 2.136878 TTGCAACCCACGGGCAATT 61.137 52.632 0.69 0.00 42.12 2.32
9539 10379 2.522923 TTGCAACCCACGGGCAAT 60.523 55.556 0.69 0.00 42.12 3.56
9541 10381 2.522923 AATTGCAACCCACGGGCA 60.523 55.556 0.00 0.00 39.32 5.36
9542 10382 2.048316 CAATTGCAACCCACGGGC 60.048 61.111 0.00 0.00 39.32 6.13
9543 10383 1.006337 CACAATTGCAACCCACGGG 60.006 57.895 0.00 0.00 42.03 5.28
9544 10384 1.006337 CCACAATTGCAACCCACGG 60.006 57.895 0.00 0.00 0.00 4.94
9545 10385 1.664333 GCCACAATTGCAACCCACG 60.664 57.895 0.00 0.00 0.00 4.94
9546 10386 1.301637 GGCCACAATTGCAACCCAC 60.302 57.895 0.00 0.00 0.00 4.61
9547 10387 1.756408 CTGGCCACAATTGCAACCCA 61.756 55.000 0.00 6.46 0.00 4.51
9548 10388 1.004679 CTGGCCACAATTGCAACCC 60.005 57.895 0.00 1.82 0.00 4.11
9549 10389 0.106521 AACTGGCCACAATTGCAACC 59.893 50.000 0.00 4.81 0.00 3.77
9550 10390 1.202510 TGAACTGGCCACAATTGCAAC 60.203 47.619 0.00 0.00 0.00 4.17
9551 10391 1.068895 CTGAACTGGCCACAATTGCAA 59.931 47.619 0.00 0.00 0.00 4.08
9552 10392 0.675083 CTGAACTGGCCACAATTGCA 59.325 50.000 0.00 0.00 0.00 4.08
9553 10393 0.668401 GCTGAACTGGCCACAATTGC 60.668 55.000 0.00 0.00 0.00 3.56
9554 10394 0.675083 TGCTGAACTGGCCACAATTG 59.325 50.000 0.00 3.24 0.00 2.32
9555 10395 3.130264 TGCTGAACTGGCCACAATT 57.870 47.368 0.00 0.00 0.00 2.32
9556 10396 4.927557 TGCTGAACTGGCCACAAT 57.072 50.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.