Multiple sequence alignment - TraesCS2B01G145600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G145600 chr2B 100.000 2639 0 0 1 2639 111446763 111449401 0.000000e+00 4874.0
1 TraesCS2B01G145600 chr2B 92.647 68 3 2 518 583 772053248 772053315 2.160000e-16 97.1
2 TraesCS2B01G145600 chr2B 91.304 69 3 2 518 583 782533479 782533411 1.010000e-14 91.6
3 TraesCS2B01G145600 chr2A 85.078 2111 151 73 583 2587 73152274 73154326 0.000000e+00 2002.0
4 TraesCS2B01G145600 chr2A 84.688 529 57 17 2 519 73151752 73152267 8.430000e-140 507.0
5 TraesCS2B01G145600 chr2A 86.813 91 8 4 593 681 617715269 617715357 6.010000e-17 99.0
6 TraesCS2B01G145600 chr2A 82.857 70 10 1 592 659 733849781 733849850 7.890000e-06 62.1
7 TraesCS2B01G145600 chr2D 89.342 1201 59 28 586 1748 73494934 73496103 0.000000e+00 1445.0
8 TraesCS2B01G145600 chr2D 90.805 522 25 10 1939 2437 73496464 73496985 0.000000e+00 676.0
9 TraesCS2B01G145600 chr2D 85.338 532 58 14 1 517 73494399 73494925 1.390000e-147 532.0
10 TraesCS2B01G145600 chr2D 92.958 71 5 0 1798 1868 73496371 73496441 1.290000e-18 104.0
11 TraesCS2B01G145600 chr4D 85.000 120 15 3 590 708 58237413 58237296 4.610000e-23 119.0
12 TraesCS2B01G145600 chr5B 92.754 69 2 2 518 583 650345302 650345370 2.160000e-16 97.1
13 TraesCS2B01G145600 chr5B 90.909 66 6 0 518 583 266015098 266015033 3.620000e-14 89.8
14 TraesCS2B01G145600 chr5B 89.855 69 4 1 518 583 194191113 194191045 4.680000e-13 86.1
15 TraesCS2B01G145600 chr5B 96.774 31 1 0 680 710 638124011 638124041 5.000000e-03 52.8
16 TraesCS2B01G145600 chr4B 92.537 67 4 1 518 583 668868218 668868284 7.780000e-16 95.3
17 TraesCS2B01G145600 chr5A 91.304 69 3 1 518 583 573592778 573592710 1.010000e-14 91.6
18 TraesCS2B01G145600 chr1B 89.474 76 3 1 513 583 579792160 579792235 1.010000e-14 91.6
19 TraesCS2B01G145600 chr1B 80.672 119 20 3 593 710 484008440 484008324 3.620000e-14 89.8
20 TraesCS2B01G145600 chr1B 89.333 75 3 1 514 583 579792246 579792172 3.620000e-14 89.8
21 TraesCS2B01G145600 chr1B 77.064 109 23 2 607 714 136440097 136439990 7.890000e-06 62.1
22 TraesCS2B01G145600 chr3B 79.675 123 22 3 593 714 65199858 65199978 4.680000e-13 86.1
23 TraesCS2B01G145600 chr6A 87.931 58 5 2 656 712 203224011 203223955 1.700000e-07 67.6
24 TraesCS2B01G145600 chr1D 88.136 59 4 3 656 713 1590416 1590360 1.700000e-07 67.6
25 TraesCS2B01G145600 chr7D 83.582 67 10 1 607 672 590153958 590153892 7.890000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G145600 chr2B 111446763 111449401 2638 False 4874.00 4874 100.00000 1 2639 1 chr2B.!!$F1 2638
1 TraesCS2B01G145600 chr2A 73151752 73154326 2574 False 1254.50 2002 84.88300 2 2587 2 chr2A.!!$F3 2585
2 TraesCS2B01G145600 chr2D 73494399 73496985 2586 False 689.25 1445 89.61075 1 2437 4 chr2D.!!$F1 2436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 935 0.46729 GTGTGGGAAGCAGTGGGAAA 60.467 55.0 0.0 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2313 0.036294 GGGAGTTTGACGAGGAAGGG 60.036 60.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 39 7.991084 ACTACCATTGTTTACTTTCCTTACC 57.009 36.000 0.00 0.00 0.00 2.85
141 152 9.965824 CCATTGTTACATTTCCTTATTATCACC 57.034 33.333 0.00 0.00 0.00 4.02
144 155 8.220755 TGTTACATTTCCTTATTATCACCAGC 57.779 34.615 0.00 0.00 0.00 4.85
146 157 5.765510 ACATTTCCTTATTATCACCAGCCA 58.234 37.500 0.00 0.00 0.00 4.75
147 158 6.376248 ACATTTCCTTATTATCACCAGCCAT 58.624 36.000 0.00 0.00 0.00 4.40
150 161 8.859090 CATTTCCTTATTATCACCAGCCATTAA 58.141 33.333 0.00 0.00 0.00 1.40
151 162 9.605951 ATTTCCTTATTATCACCAGCCATTAAT 57.394 29.630 0.00 0.00 0.00 1.40
154 165 9.432982 TCCTTATTATCACCAGCCATTAATTTT 57.567 29.630 0.00 0.00 0.00 1.82
155 166 9.480053 CCTTATTATCACCAGCCATTAATTTTG 57.520 33.333 0.00 0.00 0.00 2.44
186 200 7.519032 TTTTCCTTATTTGAACGAGGTGAAT 57.481 32.000 0.00 0.00 0.00 2.57
230 244 4.925061 TTACCACGGTTATTTGCTTACG 57.075 40.909 0.00 0.00 0.00 3.18
234 254 3.062504 CCACGGTTATTTGCTTACGTACC 59.937 47.826 0.00 0.00 32.85 3.34
235 255 3.062504 CACGGTTATTTGCTTACGTACCC 59.937 47.826 0.00 0.00 32.85 3.69
236 256 3.055891 ACGGTTATTTGCTTACGTACCCT 60.056 43.478 0.00 0.00 32.30 4.34
237 257 3.553105 CGGTTATTTGCTTACGTACCCTC 59.447 47.826 0.00 0.00 0.00 4.30
238 258 4.506758 GGTTATTTGCTTACGTACCCTCA 58.493 43.478 0.00 0.00 0.00 3.86
239 259 4.937015 GGTTATTTGCTTACGTACCCTCAA 59.063 41.667 0.00 0.00 0.00 3.02
240 260 5.064325 GGTTATTTGCTTACGTACCCTCAAG 59.936 44.000 0.00 0.00 0.00 3.02
241 261 2.754946 TTGCTTACGTACCCTCAAGG 57.245 50.000 0.00 0.00 43.78 3.61
254 274 1.180029 CTCAAGGCCTCAACCATTGG 58.820 55.000 5.23 0.00 0.00 3.16
267 287 7.147983 GCCTCAACCATTGGTTACACAATATTA 60.148 37.037 20.42 0.00 45.01 0.98
460 484 9.822185 AAAGATCCTCATATAAAAATGCCAAAC 57.178 29.630 0.00 0.00 0.00 2.93
488 514 4.497473 TTGCAGGGAAATCGTAAACAAG 57.503 40.909 0.00 0.00 0.00 3.16
497 523 6.127730 GGGAAATCGTAAACAAGATTGACCAT 60.128 38.462 0.00 0.00 37.19 3.55
502 528 5.240623 TCGTAAACAAGATTGACCATTGCTT 59.759 36.000 0.00 0.00 0.00 3.91
519 545 3.071479 TGCTTCCTCCGTTCACAAATAC 58.929 45.455 0.00 0.00 0.00 1.89
520 546 3.244422 TGCTTCCTCCGTTCACAAATACT 60.244 43.478 0.00 0.00 0.00 2.12
521 547 3.371285 GCTTCCTCCGTTCACAAATACTC 59.629 47.826 0.00 0.00 0.00 2.59
522 548 3.604875 TCCTCCGTTCACAAATACTCC 57.395 47.619 0.00 0.00 0.00 3.85
525 551 3.871594 CCTCCGTTCACAAATACTCCATC 59.128 47.826 0.00 0.00 0.00 3.51
526 552 3.869065 TCCGTTCACAAATACTCCATCC 58.131 45.455 0.00 0.00 0.00 3.51
527 553 2.607635 CCGTTCACAAATACTCCATCCG 59.392 50.000 0.00 0.00 0.00 4.18
529 555 3.682858 CGTTCACAAATACTCCATCCGTT 59.317 43.478 0.00 0.00 0.00 4.44
530 556 4.201685 CGTTCACAAATACTCCATCCGTTC 60.202 45.833 0.00 0.00 0.00 3.95
532 558 2.607635 CACAAATACTCCATCCGTTCCG 59.392 50.000 0.00 0.00 0.00 4.30
533 559 2.498481 ACAAATACTCCATCCGTTCCGA 59.502 45.455 0.00 0.00 0.00 4.55
534 560 3.134081 ACAAATACTCCATCCGTTCCGAT 59.866 43.478 0.00 0.00 0.00 4.18
535 561 4.127171 CAAATACTCCATCCGTTCCGATT 58.873 43.478 0.00 0.00 0.00 3.34
536 562 4.417426 AATACTCCATCCGTTCCGATTT 57.583 40.909 0.00 0.00 0.00 2.17
537 563 5.540400 AATACTCCATCCGTTCCGATTTA 57.460 39.130 0.00 0.00 0.00 1.40
538 564 3.175109 ACTCCATCCGTTCCGATTTAC 57.825 47.619 0.00 0.00 0.00 2.01
539 565 2.764572 ACTCCATCCGTTCCGATTTACT 59.235 45.455 0.00 0.00 0.00 2.24
540 566 3.181478 ACTCCATCCGTTCCGATTTACTC 60.181 47.826 0.00 0.00 0.00 2.59
542 568 2.480759 CCATCCGTTCCGATTTACTCGT 60.481 50.000 0.00 0.00 46.18 4.18
543 569 2.549633 TCCGTTCCGATTTACTCGTC 57.450 50.000 0.00 0.00 46.18 4.20
544 570 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
545 571 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
546 572 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
547 573 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
548 574 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
549 575 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
550 576 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
551 577 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
552 578 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
553 579 4.201523 CCGATTTACTCGTCGTGGTTTTAC 60.202 45.833 0.00 0.00 46.18 2.01
554 580 4.618489 CGATTTACTCGTCGTGGTTTTACT 59.382 41.667 0.00 0.00 42.56 2.24
555 581 5.794945 CGATTTACTCGTCGTGGTTTTACTA 59.205 40.000 0.00 0.00 42.56 1.82
556 582 6.305399 CGATTTACTCGTCGTGGTTTTACTAA 59.695 38.462 0.00 0.00 42.56 2.24
557 583 7.148983 CGATTTACTCGTCGTGGTTTTACTAAA 60.149 37.037 0.00 0.00 42.56 1.85
558 584 7.763172 TTTACTCGTCGTGGTTTTACTAAAA 57.237 32.000 0.00 0.00 0.00 1.52
654 681 5.712217 TTATTCGCTCATTTTAGTCCGTG 57.288 39.130 0.00 0.00 0.00 4.94
712 739 5.687166 TTTATGAACGGAGGGAGTACATT 57.313 39.130 0.00 0.00 0.00 2.71
713 740 3.543680 ATGAACGGAGGGAGTACATTG 57.456 47.619 0.00 0.00 0.00 2.82
721 748 5.109903 CGGAGGGAGTACATTGTTCTAAAG 58.890 45.833 0.00 0.00 0.00 1.85
860 890 0.948623 TTTATCGGCATCGGCATCGG 60.949 55.000 0.00 0.00 43.71 4.18
904 935 0.467290 GTGTGGGAAGCAGTGGGAAA 60.467 55.000 0.00 0.00 0.00 3.13
940 971 1.593006 CATCGACCGCACTCCATTTAC 59.407 52.381 0.00 0.00 0.00 2.01
949 980 4.082245 CCGCACTCCATTTACATCCTTTTT 60.082 41.667 0.00 0.00 0.00 1.94
1042 1081 2.122189 CATCCCCTCCCCTCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
1051 1090 2.674220 CCCCTCCTCCTTCCACAGC 61.674 68.421 0.00 0.00 0.00 4.40
1052 1091 2.581354 CCTCCTCCTTCCACAGCG 59.419 66.667 0.00 0.00 0.00 5.18
1053 1092 1.984570 CCTCCTCCTTCCACAGCGA 60.985 63.158 0.00 0.00 0.00 4.93
1054 1093 1.515020 CTCCTCCTTCCACAGCGAG 59.485 63.158 0.00 0.00 0.00 5.03
1082 1121 4.269523 ATGGCCACGGCACACTGT 62.270 61.111 8.16 0.00 41.84 3.55
1253 1301 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1254 1302 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1255 1303 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1298 1349 3.834799 GCGGACGAGTACTGGGGG 61.835 72.222 9.86 0.00 0.00 5.40
1545 1614 4.948257 GGTACCCATGAACGGACC 57.052 61.111 0.00 0.00 0.00 4.46
1546 1615 1.222661 GGTACCCATGAACGGACCC 59.777 63.158 0.00 0.00 0.00 4.46
1547 1616 1.222661 GTACCCATGAACGGACCCC 59.777 63.158 0.00 0.00 0.00 4.95
1635 1708 2.582436 CCCGACCCAAGCGTATGT 59.418 61.111 0.00 0.00 0.00 2.29
1717 1816 2.767445 GGCGTATTTTGACCCCCGC 61.767 63.158 0.00 0.00 40.33 6.13
1736 1836 4.321230 CCCGCAAGCTTTACAGAAAGAATT 60.321 41.667 0.00 0.00 44.23 2.17
1770 1933 3.023832 AGTTGTTGTTGAGGGTGAAAGG 58.976 45.455 0.00 0.00 0.00 3.11
1778 1941 5.147032 TGTTGAGGGTGAAAGGATTGAATT 58.853 37.500 0.00 0.00 0.00 2.17
1790 1953 4.886579 AGGATTGAATTTCTGTGCAAACC 58.113 39.130 0.00 0.00 34.54 3.27
1791 1954 4.590222 AGGATTGAATTTCTGTGCAAACCT 59.410 37.500 0.00 0.00 38.29 3.50
1792 1955 5.774690 AGGATTGAATTTCTGTGCAAACCTA 59.225 36.000 0.00 0.00 40.37 3.08
1793 1956 6.071728 AGGATTGAATTTCTGTGCAAACCTAG 60.072 38.462 0.00 0.00 40.37 3.02
1794 1957 6.294731 GGATTGAATTTCTGTGCAAACCTAGT 60.295 38.462 0.00 0.00 32.45 2.57
1795 1958 7.094377 GGATTGAATTTCTGTGCAAACCTAGTA 60.094 37.037 0.00 0.00 32.45 1.82
1796 1959 7.575414 TTGAATTTCTGTGCAAACCTAGTAA 57.425 32.000 0.00 0.00 0.00 2.24
1805 2129 7.440255 TCTGTGCAAACCTAGTAAGTAGAAAAC 59.560 37.037 0.00 0.00 0.00 2.43
1808 2132 7.226128 GTGCAAACCTAGTAAGTAGAAAACACT 59.774 37.037 0.00 0.00 0.00 3.55
1819 2143 7.524294 AAGTAGAAAACACTGTGCATTTTTG 57.476 32.000 7.90 0.00 0.00 2.44
1877 2202 3.884774 TGGGACGCCAAAGCCAGT 61.885 61.111 0.00 0.00 34.57 4.00
1878 2203 3.365265 GGGACGCCAAAGCCAGTG 61.365 66.667 0.00 0.00 34.57 3.66
1879 2204 3.365265 GGACGCCAAAGCCAGTGG 61.365 66.667 4.20 4.20 39.33 4.00
1924 2249 1.685765 CCGGTGGAGAGACATGGGA 60.686 63.158 0.00 0.00 0.00 4.37
1925 2250 1.517832 CGGTGGAGAGACATGGGAC 59.482 63.158 0.00 0.00 0.00 4.46
1963 2295 0.249405 GCAGGCAAGGAGATCTCTCG 60.249 60.000 21.81 11.59 43.76 4.04
1964 2296 1.110442 CAGGCAAGGAGATCTCTCGT 58.890 55.000 21.81 8.07 43.76 4.18
1981 2313 0.247934 CGTCCGCTTTAAATTCCCGC 60.248 55.000 0.00 0.00 0.00 6.13
2009 2341 2.158740 TCGTCAAACTCCCAATTGGACA 60.159 45.455 26.60 10.81 38.61 4.02
2059 2395 3.186047 GCATTCCGTCCGTCCGTG 61.186 66.667 0.00 0.00 0.00 4.94
2160 2502 1.600107 GGTGGCGAGTATGGTCCAA 59.400 57.895 0.00 0.00 0.00 3.53
2221 2575 1.935933 CGTAAAGCGGCCAGAGTTAT 58.064 50.000 2.24 0.00 36.85 1.89
2222 2576 2.277084 CGTAAAGCGGCCAGAGTTATT 58.723 47.619 2.24 0.00 36.85 1.40
2300 2654 9.697990 TCCCTTTTAATTATGTTATAAACCGGT 57.302 29.630 0.00 0.00 0.00 5.28
2301 2655 9.738832 CCCTTTTAATTATGTTATAAACCGGTG 57.261 33.333 8.52 0.00 0.00 4.94
2302 2656 9.738832 CCTTTTAATTATGTTATAAACCGGTGG 57.261 33.333 8.52 0.00 0.00 4.61
2303 2657 9.240159 CTTTTAATTATGTTATAAACCGGTGGC 57.760 33.333 8.52 0.00 0.00 5.01
2304 2658 8.522542 TTTAATTATGTTATAAACCGGTGGCT 57.477 30.769 8.52 0.00 0.00 4.75
2305 2659 8.522542 TTAATTATGTTATAAACCGGTGGCTT 57.477 30.769 8.52 0.28 0.00 4.35
2306 2660 6.628919 ATTATGTTATAAACCGGTGGCTTC 57.371 37.500 8.52 0.00 0.00 3.86
2307 2661 3.706600 TGTTATAAACCGGTGGCTTCT 57.293 42.857 8.52 0.00 0.00 2.85
2355 2722 7.140048 CAGCTAGTACTGTAGTTGGCTTATAC 58.860 42.308 5.39 0.00 32.78 1.47
2401 2768 3.940209 TGACCATGTTTTCCAGAATGC 57.060 42.857 0.00 0.00 31.97 3.56
2410 2777 0.107703 TTCCAGAATGCCTAGCACCG 60.108 55.000 0.00 0.00 43.04 4.94
2433 2801 0.464373 CATTGTCATAGGTGCCGGCT 60.464 55.000 29.70 10.43 0.00 5.52
2439 2807 2.746375 ATAGGTGCCGGCTTCCCAG 61.746 63.158 29.70 0.00 0.00 4.45
2447 2815 1.741770 CGGCTTCCCAGGAAACTCG 60.742 63.158 0.00 1.63 40.21 4.18
2451 2819 1.005394 TTCCCAGGAAACTCGTCGC 60.005 57.895 0.00 0.00 40.21 5.19
2456 2824 2.409975 CCAGGAAACTCGTCGCTTAAA 58.590 47.619 0.00 0.00 40.21 1.52
2477 2845 5.551760 AAAAACAGGCATATGAAGAGACG 57.448 39.130 6.97 0.00 0.00 4.18
2478 2846 4.471904 AAACAGGCATATGAAGAGACGA 57.528 40.909 6.97 0.00 0.00 4.20
2484 2852 5.525012 CAGGCATATGAAGAGACGAAAATGA 59.475 40.000 6.97 0.00 0.00 2.57
2498 2866 3.668656 CGAAAATGAAGCGGAAACTTTCC 59.331 43.478 10.22 10.22 46.62 3.13
2531 2899 5.298777 CAGCAGGAAAATAGAAATGGAGAGG 59.701 44.000 0.00 0.00 0.00 3.69
2559 2927 3.989817 AGGAAAATGAAAGCGCAATTCAC 59.010 39.130 24.86 14.93 39.43 3.18
2566 2934 3.551082 TGAAAGCGCAATTCACAAAACAG 59.449 39.130 20.49 0.00 32.10 3.16
2572 2940 3.061271 CGCAATTCACAAAACAGAAACGG 60.061 43.478 0.00 0.00 0.00 4.44
2576 2944 6.238076 GCAATTCACAAAACAGAAACGGAAAT 60.238 34.615 0.00 0.00 0.00 2.17
2577 2945 6.826893 ATTCACAAAACAGAAACGGAAATG 57.173 33.333 0.00 0.00 0.00 2.32
2580 2948 5.068460 TCACAAAACAGAAACGGAAATGGAT 59.932 36.000 0.00 0.00 0.00 3.41
2613 2981 3.000082 GAAACGGAACAGCCTTTTCTG 58.000 47.619 0.00 0.00 46.17 3.02
2614 2982 1.318576 AACGGAACAGCCTTTTCTGG 58.681 50.000 4.56 0.00 38.36 3.86
2615 2983 0.182775 ACGGAACAGCCTTTTCTGGT 59.817 50.000 4.56 0.00 38.36 4.00
2616 2984 0.593128 CGGAACAGCCTTTTCTGGTG 59.407 55.000 0.00 0.00 38.36 4.17
2617 2985 0.961753 GGAACAGCCTTTTCTGGTGG 59.038 55.000 0.00 0.00 38.36 4.61
2618 2986 1.478654 GGAACAGCCTTTTCTGGTGGA 60.479 52.381 0.00 0.00 38.36 4.02
2619 2987 2.306847 GAACAGCCTTTTCTGGTGGAA 58.693 47.619 0.00 0.00 38.36 3.53
2620 2988 1.692411 ACAGCCTTTTCTGGTGGAAC 58.308 50.000 0.00 0.00 38.36 3.62
2621 2989 0.593128 CAGCCTTTTCTGGTGGAACG 59.407 55.000 0.00 0.00 38.12 3.95
2622 2990 0.537371 AGCCTTTTCTGGTGGAACGG 60.537 55.000 0.00 0.00 38.12 4.44
2623 2991 0.536460 GCCTTTTCTGGTGGAACGGA 60.536 55.000 0.00 0.00 38.12 4.69
2624 2992 1.235724 CCTTTTCTGGTGGAACGGAC 58.764 55.000 0.00 0.00 38.12 4.79
2625 2993 0.865769 CTTTTCTGGTGGAACGGACG 59.134 55.000 0.00 0.00 38.12 4.79
2626 2994 1.161563 TTTTCTGGTGGAACGGACGC 61.162 55.000 0.00 0.00 38.12 5.19
2627 2995 2.313051 TTTCTGGTGGAACGGACGCA 62.313 55.000 0.00 0.00 38.12 5.24
2628 2996 2.709125 TTCTGGTGGAACGGACGCAG 62.709 60.000 0.00 0.00 38.12 5.18
2629 2997 3.220999 CTGGTGGAACGGACGCAGA 62.221 63.158 0.00 0.00 38.12 4.26
2630 2998 2.029964 GGTGGAACGGACGCAGAA 59.970 61.111 0.00 0.00 38.12 3.02
2631 2999 1.595929 GGTGGAACGGACGCAGAAA 60.596 57.895 0.00 0.00 38.12 2.52
2632 3000 1.568025 GTGGAACGGACGCAGAAAC 59.432 57.895 0.00 0.00 0.00 2.78
2633 3001 1.952133 TGGAACGGACGCAGAAACG 60.952 57.895 0.00 0.00 39.50 3.60
2634 3002 2.664436 GGAACGGACGCAGAAACGG 61.664 63.158 0.00 0.00 37.37 4.44
2635 3003 1.662446 GAACGGACGCAGAAACGGA 60.662 57.895 0.00 0.00 37.37 4.69
2636 3004 1.216941 GAACGGACGCAGAAACGGAA 61.217 55.000 0.00 0.00 37.37 4.30
2637 3005 0.601841 AACGGACGCAGAAACGGAAT 60.602 50.000 0.00 0.00 37.37 3.01
2638 3006 0.601841 ACGGACGCAGAAACGGAATT 60.602 50.000 0.00 0.00 37.37 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.901172 ATAGGTAAGGAAAGTAAACAATGGTAG 57.099 33.333 0.00 0.00 0.00 3.18
23 24 8.742125 ATGGATGATGATAGGTAAGGAAAGTA 57.258 34.615 0.00 0.00 0.00 2.24
24 25 7.639062 ATGGATGATGATAGGTAAGGAAAGT 57.361 36.000 0.00 0.00 0.00 2.66
122 130 6.905736 TGGCTGGTGATAATAAGGAAATGTA 58.094 36.000 0.00 0.00 0.00 2.29
124 135 6.906157 ATGGCTGGTGATAATAAGGAAATG 57.094 37.500 0.00 0.00 0.00 2.32
157 168 9.855021 CACCTCGTTCAAATAAGGAAAAATAAT 57.145 29.630 0.00 0.00 32.99 1.28
158 169 9.069082 TCACCTCGTTCAAATAAGGAAAAATAA 57.931 29.630 0.00 0.00 32.99 1.40
159 170 8.624367 TCACCTCGTTCAAATAAGGAAAAATA 57.376 30.769 0.00 0.00 32.99 1.40
160 171 7.519032 TCACCTCGTTCAAATAAGGAAAAAT 57.481 32.000 0.00 0.00 32.99 1.82
163 177 8.801882 ATATTCACCTCGTTCAAATAAGGAAA 57.198 30.769 0.00 0.00 32.99 3.13
230 244 0.035343 GGTTGAGGCCTTGAGGGTAC 60.035 60.000 6.77 0.00 37.43 3.34
234 254 1.180029 CAATGGTTGAGGCCTTGAGG 58.820 55.000 6.77 0.00 38.53 3.86
235 255 1.180029 CCAATGGTTGAGGCCTTGAG 58.820 55.000 6.77 0.00 0.00 3.02
236 256 0.482446 ACCAATGGTTGAGGCCTTGA 59.518 50.000 6.77 0.00 27.29 3.02
237 257 1.341080 AACCAATGGTTGAGGCCTTG 58.659 50.000 18.01 0.00 45.07 3.61
238 258 2.158385 TGTAACCAATGGTTGAGGCCTT 60.158 45.455 26.55 0.80 46.35 4.35
239 259 1.427368 TGTAACCAATGGTTGAGGCCT 59.573 47.619 26.55 3.86 46.35 5.19
240 260 1.544246 GTGTAACCAATGGTTGAGGCC 59.456 52.381 26.55 10.05 46.35 5.19
241 261 2.235016 TGTGTAACCAATGGTTGAGGC 58.765 47.619 26.55 14.12 46.35 4.70
267 287 7.789831 TCTTCACCTGGTACATATAAGGAAGAT 59.210 37.037 13.34 0.00 38.20 2.40
435 459 8.980596 TGTTTGGCATTTTTATATGAGGATCTT 58.019 29.630 0.00 0.00 34.92 2.40
436 460 8.537728 TGTTTGGCATTTTTATATGAGGATCT 57.462 30.769 0.00 0.00 34.92 2.75
437 461 9.598517 TTTGTTTGGCATTTTTATATGAGGATC 57.401 29.630 0.00 0.00 0.00 3.36
466 492 4.764823 TCTTGTTTACGATTTCCCTGCAAT 59.235 37.500 0.00 0.00 0.00 3.56
471 497 5.414765 GGTCAATCTTGTTTACGATTTCCCT 59.585 40.000 0.00 0.00 0.00 4.20
474 500 7.201350 GCAATGGTCAATCTTGTTTACGATTTC 60.201 37.037 0.00 0.00 0.00 2.17
479 505 5.046910 AGCAATGGTCAATCTTGTTTACG 57.953 39.130 0.00 0.00 0.00 3.18
488 514 1.672881 CGGAGGAAGCAATGGTCAATC 59.327 52.381 0.00 0.00 0.00 2.67
497 523 2.045561 TTTGTGAACGGAGGAAGCAA 57.954 45.000 0.00 0.00 0.00 3.91
502 528 2.901192 TGGAGTATTTGTGAACGGAGGA 59.099 45.455 0.00 0.00 0.00 3.71
532 558 7.566858 TTAGTAAAACCACGACGAGTAAATC 57.433 36.000 0.00 0.00 0.00 2.17
533 559 7.945033 TTTAGTAAAACCACGACGAGTAAAT 57.055 32.000 0.00 0.00 0.00 1.40
534 560 7.617557 GTTTTAGTAAAACCACGACGAGTAAA 58.382 34.615 22.65 0.00 43.78 2.01
535 561 7.160633 GTTTTAGTAAAACCACGACGAGTAA 57.839 36.000 22.65 0.00 43.78 2.24
536 562 6.747659 GTTTTAGTAAAACCACGACGAGTA 57.252 37.500 22.65 0.00 43.78 2.59
537 563 5.641777 GTTTTAGTAAAACCACGACGAGT 57.358 39.130 22.65 0.00 43.78 4.18
549 575 8.649841 CGATTTACTCGTCATGGTTTTAGTAAA 58.350 33.333 15.48 15.48 42.56 2.01
550 576 7.276218 CCGATTTACTCGTCATGGTTTTAGTAA 59.724 37.037 0.00 0.00 46.18 2.24
551 577 6.753279 CCGATTTACTCGTCATGGTTTTAGTA 59.247 38.462 0.00 0.00 46.18 1.82
552 578 5.579511 CCGATTTACTCGTCATGGTTTTAGT 59.420 40.000 0.00 0.00 46.18 2.24
553 579 5.808540 TCCGATTTACTCGTCATGGTTTTAG 59.191 40.000 0.00 0.00 46.18 1.85
554 580 5.722263 TCCGATTTACTCGTCATGGTTTTA 58.278 37.500 0.00 0.00 46.18 1.52
555 581 4.571919 TCCGATTTACTCGTCATGGTTTT 58.428 39.130 0.00 0.00 46.18 2.43
556 582 4.196626 TCCGATTTACTCGTCATGGTTT 57.803 40.909 0.00 0.00 46.18 3.27
557 583 3.880047 TCCGATTTACTCGTCATGGTT 57.120 42.857 0.00 0.00 46.18 3.67
558 584 3.518590 GTTCCGATTTACTCGTCATGGT 58.481 45.455 0.00 0.00 46.18 3.55
559 585 2.534349 CGTTCCGATTTACTCGTCATGG 59.466 50.000 0.00 0.00 46.18 3.66
560 586 2.534349 CCGTTCCGATTTACTCGTCATG 59.466 50.000 0.00 0.00 46.18 3.07
561 587 2.424601 TCCGTTCCGATTTACTCGTCAT 59.575 45.455 0.00 0.00 46.18 3.06
562 588 1.811965 TCCGTTCCGATTTACTCGTCA 59.188 47.619 0.00 0.00 46.18 4.35
563 589 2.549633 TCCGTTCCGATTTACTCGTC 57.450 50.000 0.00 0.00 46.18 4.20
564 590 4.843220 ATATCCGTTCCGATTTACTCGT 57.157 40.909 0.00 0.00 46.18 4.18
566 592 8.081025 AGTTAGAATATCCGTTCCGATTTACTC 58.919 37.037 0.00 0.00 0.00 2.59
567 593 7.949434 AGTTAGAATATCCGTTCCGATTTACT 58.051 34.615 0.00 0.00 0.00 2.24
568 594 8.585189 AAGTTAGAATATCCGTTCCGATTTAC 57.415 34.615 0.00 0.00 0.00 2.01
569 595 9.603921 AAAAGTTAGAATATCCGTTCCGATTTA 57.396 29.630 0.00 0.00 0.00 1.40
570 596 8.502105 AAAAGTTAGAATATCCGTTCCGATTT 57.498 30.769 0.00 0.00 0.00 2.17
571 597 8.502105 AAAAAGTTAGAATATCCGTTCCGATT 57.498 30.769 0.00 0.00 0.00 3.34
572 598 7.985752 AGAAAAAGTTAGAATATCCGTTCCGAT 59.014 33.333 0.00 0.00 0.00 4.18
573 599 7.277098 CAGAAAAAGTTAGAATATCCGTTCCGA 59.723 37.037 0.00 0.00 0.00 4.55
574 600 7.277098 TCAGAAAAAGTTAGAATATCCGTTCCG 59.723 37.037 0.00 0.00 0.00 4.30
575 601 8.488651 TCAGAAAAAGTTAGAATATCCGTTCC 57.511 34.615 0.00 0.00 0.00 3.62
628 655 5.957796 CGGACTAAAATGAGCGAATAAACAC 59.042 40.000 0.00 0.00 0.00 3.32
634 661 3.370978 CACACGGACTAAAATGAGCGAAT 59.629 43.478 0.00 0.00 0.00 3.34
638 665 4.491676 TCTACACACGGACTAAAATGAGC 58.508 43.478 0.00 0.00 0.00 4.26
684 711 8.926374 TGTACTCCCTCCGTTCATAAATATAAA 58.074 33.333 0.00 0.00 0.00 1.40
721 748 7.433425 GCCTTTGCATCATTTCTATTGTACTTC 59.567 37.037 0.00 0.00 37.47 3.01
842 872 1.374125 CCGATGCCGATGCCGATAA 60.374 57.895 0.00 0.00 38.22 1.75
874 904 2.820330 CTTCCCACACGCAAAAATTGT 58.180 42.857 0.00 0.00 0.00 2.71
882 913 2.591429 CACTGCTTCCCACACGCA 60.591 61.111 0.00 0.00 0.00 5.24
883 914 3.357079 CCACTGCTTCCCACACGC 61.357 66.667 0.00 0.00 0.00 5.34
884 915 2.669569 CCCACTGCTTCCCACACG 60.670 66.667 0.00 0.00 0.00 4.49
885 916 0.467290 TTTCCCACTGCTTCCCACAC 60.467 55.000 0.00 0.00 0.00 3.82
886 917 0.467290 GTTTCCCACTGCTTCCCACA 60.467 55.000 0.00 0.00 0.00 4.17
887 918 0.178990 AGTTTCCCACTGCTTCCCAC 60.179 55.000 0.00 0.00 32.83 4.61
888 919 0.110486 GAGTTTCCCACTGCTTCCCA 59.890 55.000 0.00 0.00 35.01 4.37
890 921 0.110486 TGGAGTTTCCCACTGCTTCC 59.890 55.000 0.00 0.00 44.21 3.46
940 971 4.303282 CACCCACGGTTTTAAAAAGGATG 58.697 43.478 1.31 0.00 31.02 3.51
949 980 3.347405 CGCGCACCCACGGTTTTA 61.347 61.111 8.75 0.00 31.02 1.52
1230 1278 2.123640 CTCCTCCTCCTCGTCCCC 60.124 72.222 0.00 0.00 0.00 4.81
1298 1349 1.086634 GCTGCTGCTGCTGGTAGTAC 61.087 60.000 22.10 0.00 40.48 2.73
1337 1394 1.680651 CGTGCTGACCTCCTCCTCT 60.681 63.158 0.00 0.00 0.00 3.69
1432 1489 4.779733 TCTCCTCCCCCTCACGCC 62.780 72.222 0.00 0.00 0.00 5.68
1543 1612 4.441584 TATGGCTTCCCCCGGGGT 62.442 66.667 37.66 20.19 44.74 4.95
1544 1613 3.570212 CTATGGCTTCCCCCGGGG 61.570 72.222 34.65 34.65 46.11 5.73
1545 1614 4.271016 GCTATGGCTTCCCCCGGG 62.271 72.222 15.80 15.80 35.22 5.73
1668 1756 7.672983 TGACTTGTTGAGGAGTTGAATATTC 57.327 36.000 8.60 8.60 0.00 1.75
1717 1816 9.339492 GAAGATCAATTCTTTCTGTAAAGCTTG 57.661 33.333 0.00 0.00 44.88 4.01
1736 1836 7.442364 CCTCAACAACAACTAAAGAGAAGATCA 59.558 37.037 0.00 0.00 0.00 2.92
1745 1845 5.828299 TTCACCCTCAACAACAACTAAAG 57.172 39.130 0.00 0.00 0.00 1.85
1746 1846 5.126384 CCTTTCACCCTCAACAACAACTAAA 59.874 40.000 0.00 0.00 0.00 1.85
1749 1849 3.023832 CCTTTCACCCTCAACAACAACT 58.976 45.455 0.00 0.00 0.00 3.16
1750 1850 3.020984 TCCTTTCACCCTCAACAACAAC 58.979 45.455 0.00 0.00 0.00 3.32
1770 1933 6.681777 ACTAGGTTTGCACAGAAATTCAATC 58.318 36.000 0.00 0.00 0.00 2.67
1778 1941 6.659745 TCTACTTACTAGGTTTGCACAGAA 57.340 37.500 0.00 0.00 0.00 3.02
1790 1953 7.891183 ATGCACAGTGTTTTCTACTTACTAG 57.109 36.000 1.61 0.00 0.00 2.57
1791 1954 8.671384 AAATGCACAGTGTTTTCTACTTACTA 57.329 30.769 1.61 0.00 0.00 1.82
1792 1955 7.568199 AAATGCACAGTGTTTTCTACTTACT 57.432 32.000 1.61 0.00 0.00 2.24
1793 1956 8.531530 CAAAAATGCACAGTGTTTTCTACTTAC 58.468 33.333 1.61 0.00 0.00 2.34
1794 1957 8.247562 ACAAAAATGCACAGTGTTTTCTACTTA 58.752 29.630 1.61 0.00 0.00 2.24
1795 1958 7.096551 ACAAAAATGCACAGTGTTTTCTACTT 58.903 30.769 1.61 0.00 0.00 2.24
1796 1959 6.630071 ACAAAAATGCACAGTGTTTTCTACT 58.370 32.000 1.61 0.00 0.00 2.57
1805 2129 4.183101 ACAAGGAACAAAAATGCACAGTG 58.817 39.130 0.00 0.00 0.00 3.66
1808 2132 7.099764 TCTAAAACAAGGAACAAAAATGCACA 58.900 30.769 0.00 0.00 0.00 4.57
1924 2249 1.539869 ACCTCTCCTGCACCCATGT 60.540 57.895 0.00 0.00 0.00 3.21
1925 2250 1.077930 CACCTCTCCTGCACCCATG 60.078 63.158 0.00 0.00 0.00 3.66
1926 2251 2.304056 CCACCTCTCCTGCACCCAT 61.304 63.158 0.00 0.00 0.00 4.00
1927 2252 2.930019 CCACCTCTCCTGCACCCA 60.930 66.667 0.00 0.00 0.00 4.51
1928 2253 4.416738 GCCACCTCTCCTGCACCC 62.417 72.222 0.00 0.00 0.00 4.61
1929 2254 3.618780 CTGCCACCTCTCCTGCACC 62.619 68.421 0.00 0.00 0.00 5.01
1930 2255 2.046507 CTGCCACCTCTCCTGCAC 60.047 66.667 0.00 0.00 0.00 4.57
1931 2256 3.324930 CCTGCCACCTCTCCTGCA 61.325 66.667 0.00 0.00 0.00 4.41
1932 2257 4.792804 GCCTGCCACCTCTCCTGC 62.793 72.222 0.00 0.00 0.00 4.85
1963 2295 0.099968 GGCGGGAATTTAAAGCGGAC 59.900 55.000 0.00 0.00 0.00 4.79
1964 2296 1.033202 GGGCGGGAATTTAAAGCGGA 61.033 55.000 0.00 0.00 0.00 5.54
1981 2313 0.036294 GGGAGTTTGACGAGGAAGGG 60.036 60.000 0.00 0.00 0.00 3.95
2059 2395 0.175760 TGAACATGAGCCTAGGACGC 59.824 55.000 14.75 6.48 0.00 5.19
2144 2486 1.220749 GCTTGGACCATACTCGCCA 59.779 57.895 0.00 0.00 0.00 5.69
2147 2489 3.258225 CGAGCTTGGACCATACTCG 57.742 57.895 24.09 24.09 43.46 4.18
2150 2492 1.523938 GGCCGAGCTTGGACCATAC 60.524 63.158 25.25 4.25 0.00 2.39
2214 2568 4.466370 GCTTTGCCCCCTTTAAATAACTCT 59.534 41.667 0.00 0.00 0.00 3.24
2291 2645 3.434940 AGAAAGAAGCCACCGGTTTAT 57.565 42.857 2.97 0.00 0.00 1.40
2292 2646 2.943036 AGAAAGAAGCCACCGGTTTA 57.057 45.000 2.97 0.00 0.00 2.01
2296 2650 1.897560 AGAAAGAAAGAAGCCACCGG 58.102 50.000 0.00 0.00 0.00 5.28
2297 2651 3.565902 AGAAAGAAAGAAAGAAGCCACCG 59.434 43.478 0.00 0.00 0.00 4.94
2298 2652 5.521906 AAGAAAGAAAGAAAGAAGCCACC 57.478 39.130 0.00 0.00 0.00 4.61
2299 2653 5.980116 GGAAAGAAAGAAAGAAAGAAGCCAC 59.020 40.000 0.00 0.00 0.00 5.01
2300 2654 5.221048 CGGAAAGAAAGAAAGAAAGAAGCCA 60.221 40.000 0.00 0.00 0.00 4.75
2301 2655 5.008712 TCGGAAAGAAAGAAAGAAAGAAGCC 59.991 40.000 0.00 0.00 0.00 4.35
2302 2656 6.061231 TCGGAAAGAAAGAAAGAAAGAAGC 57.939 37.500 0.00 0.00 0.00 3.86
2303 2657 6.017523 AGCTCGGAAAGAAAGAAAGAAAGAAG 60.018 38.462 0.00 0.00 0.00 2.85
2304 2658 5.823045 AGCTCGGAAAGAAAGAAAGAAAGAA 59.177 36.000 0.00 0.00 0.00 2.52
2305 2659 5.368989 AGCTCGGAAAGAAAGAAAGAAAGA 58.631 37.500 0.00 0.00 0.00 2.52
2306 2660 5.681337 AGCTCGGAAAGAAAGAAAGAAAG 57.319 39.130 0.00 0.00 0.00 2.62
2307 2661 6.053005 TGTAGCTCGGAAAGAAAGAAAGAAA 58.947 36.000 0.00 0.00 0.00 2.52
2355 2722 1.009675 GCCACACGTGCTGTCTTTG 60.010 57.895 17.22 4.12 0.00 2.77
2380 2747 3.006752 GGCATTCTGGAAAACATGGTCAA 59.993 43.478 0.00 0.00 0.00 3.18
2401 2768 0.811616 GACAATGCCTCGGTGCTAGG 60.812 60.000 0.00 0.00 37.17 3.02
2433 2801 1.005394 GCGACGAGTTTCCTGGGAA 60.005 57.895 0.00 0.00 0.00 3.97
2456 2824 4.832248 TCGTCTCTTCATATGCCTGTTTT 58.168 39.130 0.00 0.00 0.00 2.43
2462 2830 5.991328 TCATTTTCGTCTCTTCATATGCC 57.009 39.130 0.00 0.00 0.00 4.40
2467 2835 3.372206 CCGCTTCATTTTCGTCTCTTCAT 59.628 43.478 0.00 0.00 0.00 2.57
2468 2836 2.736721 CCGCTTCATTTTCGTCTCTTCA 59.263 45.455 0.00 0.00 0.00 3.02
2469 2837 2.993899 TCCGCTTCATTTTCGTCTCTTC 59.006 45.455 0.00 0.00 0.00 2.87
2470 2838 3.040147 TCCGCTTCATTTTCGTCTCTT 57.960 42.857 0.00 0.00 0.00 2.85
2471 2839 2.743636 TCCGCTTCATTTTCGTCTCT 57.256 45.000 0.00 0.00 0.00 3.10
2472 2840 3.186613 AGTTTCCGCTTCATTTTCGTCTC 59.813 43.478 0.00 0.00 0.00 3.36
2473 2841 3.139077 AGTTTCCGCTTCATTTTCGTCT 58.861 40.909 0.00 0.00 0.00 4.18
2474 2842 3.537793 AGTTTCCGCTTCATTTTCGTC 57.462 42.857 0.00 0.00 0.00 4.20
2475 2843 3.982576 AAGTTTCCGCTTCATTTTCGT 57.017 38.095 0.00 0.00 0.00 3.85
2476 2844 3.668656 GGAAAGTTTCCGCTTCATTTTCG 59.331 43.478 18.70 0.00 40.59 3.46
2504 2872 6.947733 TCTCCATTTCTATTTTCCTGCTGAAA 59.052 34.615 0.00 0.00 41.18 2.69
2505 2873 6.484288 TCTCCATTTCTATTTTCCTGCTGAA 58.516 36.000 0.00 0.00 0.00 3.02
2506 2874 6.065976 TCTCCATTTCTATTTTCCTGCTGA 57.934 37.500 0.00 0.00 0.00 4.26
2507 2875 5.298777 CCTCTCCATTTCTATTTTCCTGCTG 59.701 44.000 0.00 0.00 0.00 4.41
2508 2876 5.192522 TCCTCTCCATTTCTATTTTCCTGCT 59.807 40.000 0.00 0.00 0.00 4.24
2509 2877 5.440610 TCCTCTCCATTTCTATTTTCCTGC 58.559 41.667 0.00 0.00 0.00 4.85
2510 2878 7.944729 TTTCCTCTCCATTTCTATTTTCCTG 57.055 36.000 0.00 0.00 0.00 3.86
2537 2905 3.989817 GTGAATTGCGCTTTCATTTTCCT 59.010 39.130 22.89 0.00 35.68 3.36
2538 2906 3.740321 TGTGAATTGCGCTTTCATTTTCC 59.260 39.130 22.89 13.59 35.68 3.13
2543 2911 4.118410 TGTTTTGTGAATTGCGCTTTCAT 58.882 34.783 22.89 3.42 35.68 2.57
2550 2918 3.061271 CCGTTTCTGTTTTGTGAATTGCG 60.061 43.478 0.00 0.00 0.00 4.85
2554 2922 5.752955 CCATTTCCGTTTCTGTTTTGTGAAT 59.247 36.000 0.00 0.00 0.00 2.57
2559 2927 6.843069 AAATCCATTTCCGTTTCTGTTTTG 57.157 33.333 0.00 0.00 0.00 2.44
2587 2955 2.539338 GCTGTTCCGTTTCCGCACA 61.539 57.895 0.00 0.00 0.00 4.57
2588 2956 2.251371 GCTGTTCCGTTTCCGCAC 59.749 61.111 0.00 0.00 0.00 5.34
2589 2957 2.951475 AAGGCTGTTCCGTTTCCGCA 62.951 55.000 0.00 0.00 40.77 5.69
2590 2958 1.792118 AAAGGCTGTTCCGTTTCCGC 61.792 55.000 0.00 0.00 40.77 5.54
2591 2959 0.666374 AAAAGGCTGTTCCGTTTCCG 59.334 50.000 0.00 0.00 41.70 4.30
2594 2962 1.681264 CCAGAAAAGGCTGTTCCGTTT 59.319 47.619 13.84 0.00 46.81 3.60
2595 2963 1.318576 CCAGAAAAGGCTGTTCCGTT 58.681 50.000 13.84 0.00 40.77 4.44
2596 2964 0.182775 ACCAGAAAAGGCTGTTCCGT 59.817 50.000 13.84 7.76 40.77 4.69
2597 2965 0.593128 CACCAGAAAAGGCTGTTCCG 59.407 55.000 13.84 3.63 40.77 4.30
2598 2966 0.961753 CCACCAGAAAAGGCTGTTCC 59.038 55.000 13.84 0.00 34.06 3.62
2599 2967 1.981256 TCCACCAGAAAAGGCTGTTC 58.019 50.000 9.51 9.51 34.06 3.18
2600 2968 2.031870 GTTCCACCAGAAAAGGCTGTT 58.968 47.619 0.00 0.00 35.85 3.16
2601 2969 1.692411 GTTCCACCAGAAAAGGCTGT 58.308 50.000 0.00 0.00 35.85 4.40
2602 2970 0.593128 CGTTCCACCAGAAAAGGCTG 59.407 55.000 0.00 0.00 35.85 4.85
2603 2971 0.537371 CCGTTCCACCAGAAAAGGCT 60.537 55.000 0.00 0.00 35.85 4.58
2604 2972 0.536460 TCCGTTCCACCAGAAAAGGC 60.536 55.000 0.00 0.00 35.85 4.35
2605 2973 1.235724 GTCCGTTCCACCAGAAAAGG 58.764 55.000 0.00 0.00 35.85 3.11
2606 2974 0.865769 CGTCCGTTCCACCAGAAAAG 59.134 55.000 0.00 0.00 35.85 2.27
2607 2975 1.161563 GCGTCCGTTCCACCAGAAAA 61.162 55.000 0.00 0.00 35.85 2.29
2608 2976 1.595929 GCGTCCGTTCCACCAGAAA 60.596 57.895 0.00 0.00 35.85 2.52
2609 2977 2.029964 GCGTCCGTTCCACCAGAA 59.970 61.111 0.00 0.00 0.00 3.02
2610 2978 3.220999 CTGCGTCCGTTCCACCAGA 62.221 63.158 0.00 0.00 0.00 3.86
2611 2979 2.709125 TTCTGCGTCCGTTCCACCAG 62.709 60.000 0.00 0.00 0.00 4.00
2612 2980 2.313051 TTTCTGCGTCCGTTCCACCA 62.313 55.000 0.00 0.00 0.00 4.17
2613 2981 1.595929 TTTCTGCGTCCGTTCCACC 60.596 57.895 0.00 0.00 0.00 4.61
2614 2982 1.568025 GTTTCTGCGTCCGTTCCAC 59.432 57.895 0.00 0.00 0.00 4.02
2615 2983 1.952133 CGTTTCTGCGTCCGTTCCA 60.952 57.895 0.00 0.00 0.00 3.53
2616 2984 2.664436 CCGTTTCTGCGTCCGTTCC 61.664 63.158 0.00 0.00 0.00 3.62
2617 2985 1.216941 TTCCGTTTCTGCGTCCGTTC 61.217 55.000 0.00 0.00 0.00 3.95
2618 2986 0.601841 ATTCCGTTTCTGCGTCCGTT 60.602 50.000 0.00 0.00 0.00 4.44
2619 2987 0.601841 AATTCCGTTTCTGCGTCCGT 60.602 50.000 0.00 0.00 0.00 4.69
2620 2988 2.159181 AATTCCGTTTCTGCGTCCG 58.841 52.632 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.