Multiple sequence alignment - TraesCS2B01G145300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G145300 chr2B 100.000 3851 0 0 1 3851 111083038 111079188 0.000000e+00 7112.0
1 TraesCS2B01G145300 chr2B 82.268 1517 235 21 1165 2670 111359647 111361140 0.000000e+00 1280.0
2 TraesCS2B01G145300 chr2B 94.495 109 6 0 254 362 111082646 111082538 6.620000e-38 169.0
3 TraesCS2B01G145300 chr2B 94.495 109 6 0 393 501 111082785 111082677 6.620000e-38 169.0
4 TraesCS2B01G145300 chr2A 90.934 2217 158 21 689 2874 72814585 72812381 0.000000e+00 2940.0
5 TraesCS2B01G145300 chr2A 81.518 1515 242 25 1165 2666 72932865 72931376 0.000000e+00 1212.0
6 TraesCS2B01G145300 chr2A 81.564 716 65 24 3097 3794 72758666 72758000 2.630000e-146 529.0
7 TraesCS2B01G145300 chr2A 86.818 220 12 3 393 611 72815082 72814879 2.990000e-56 230.0
8 TraesCS2B01G145300 chr2A 93.846 130 7 1 234 362 72815102 72814973 1.090000e-45 195.0
9 TraesCS2B01G145300 chr2A 83.486 109 6 5 601 697 72814712 72814604 1.470000e-14 91.6
10 TraesCS2B01G145300 chr2D 91.640 1878 132 12 1061 2914 73417517 73415641 0.000000e+00 2575.0
11 TraesCS2B01G145300 chr2D 82.232 1514 233 23 1165 2666 73454324 73452835 0.000000e+00 1273.0
12 TraesCS2B01G145300 chr2D 79.770 781 86 31 2988 3728 73414950 73414202 5.740000e-138 501.0
13 TraesCS2B01G145300 chr2D 90.909 253 17 4 780 1032 73417763 73417517 6.160000e-88 335.0
14 TraesCS2B01G145300 chr2D 95.312 64 3 0 48 111 579550694 579550757 6.810000e-18 102.0
15 TraesCS2B01G145300 chr7A 82.093 1491 235 22 1169 2655 81548322 81549784 0.000000e+00 1245.0
16 TraesCS2B01G145300 chr7A 80.892 1502 237 26 1163 2661 518658738 518657284 0.000000e+00 1138.0
17 TraesCS2B01G145300 chr7D 81.007 1490 253 21 1169 2655 78115570 78117032 0.000000e+00 1157.0
18 TraesCS2B01G145300 chr7D 80.905 1503 254 20 1163 2662 477641723 477643195 0.000000e+00 1155.0
19 TraesCS2B01G145300 chr7B 81.070 1495 242 26 1168 2655 501965747 501967207 0.000000e+00 1155.0
20 TraesCS2B01G145300 chr7B 81.553 721 113 11 1169 1888 25339246 25339947 9.280000e-161 577.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G145300 chr2B 111079188 111083038 3850 True 2483.333333 7112 96.330000 1 3851 3 chr2B.!!$R1 3850
1 TraesCS2B01G145300 chr2B 111359647 111361140 1493 False 1280.000000 1280 82.268000 1165 2670 1 chr2B.!!$F1 1505
2 TraesCS2B01G145300 chr2A 72931376 72932865 1489 True 1212.000000 1212 81.518000 1165 2666 1 chr2A.!!$R2 1501
3 TraesCS2B01G145300 chr2A 72812381 72815102 2721 True 864.150000 2940 88.771000 234 2874 4 chr2A.!!$R3 2640
4 TraesCS2B01G145300 chr2A 72758000 72758666 666 True 529.000000 529 81.564000 3097 3794 1 chr2A.!!$R1 697
5 TraesCS2B01G145300 chr2D 73452835 73454324 1489 True 1273.000000 1273 82.232000 1165 2666 1 chr2D.!!$R1 1501
6 TraesCS2B01G145300 chr2D 73414202 73417763 3561 True 1137.000000 2575 87.439667 780 3728 3 chr2D.!!$R2 2948
7 TraesCS2B01G145300 chr7A 81548322 81549784 1462 False 1245.000000 1245 82.093000 1169 2655 1 chr7A.!!$F1 1486
8 TraesCS2B01G145300 chr7A 518657284 518658738 1454 True 1138.000000 1138 80.892000 1163 2661 1 chr7A.!!$R1 1498
9 TraesCS2B01G145300 chr7D 78115570 78117032 1462 False 1157.000000 1157 81.007000 1169 2655 1 chr7D.!!$F1 1486
10 TraesCS2B01G145300 chr7D 477641723 477643195 1472 False 1155.000000 1155 80.905000 1163 2662 1 chr7D.!!$F2 1499
11 TraesCS2B01G145300 chr7B 501965747 501967207 1460 False 1155.000000 1155 81.070000 1168 2655 1 chr7B.!!$F2 1487
12 TraesCS2B01G145300 chr7B 25339246 25339947 701 False 577.000000 577 81.553000 1169 1888 1 chr7B.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.106708 TGATCCAATCCACGCCTAGC 59.893 55.0 0.00 0.0 0.00 3.42 F
441 443 0.451628 CAGTGATGTGAAGTTGCGCG 60.452 55.0 0.00 0.0 0.00 6.86 F
1054 1296 0.251916 ATGCGCCAAACCTAGTAGCA 59.748 50.0 4.18 0.0 37.54 3.49 F
1159 1401 1.014564 GGTCTCCCGCTTGTTCTTCG 61.015 60.0 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1294 0.659957 GGCCAGTGATCGATCTTTGC 59.340 55.0 25.02 19.95 0.00 3.68 R
2137 2379 0.246635 CGGTTCAAGATGTCCTCCGT 59.753 55.0 0.00 0.00 33.20 4.69 R
2138 2380 0.460284 CCGGTTCAAGATGTCCTCCG 60.460 60.0 0.00 0.00 36.85 4.63 R
2985 3355 0.738762 CCGCAGTGTCCATGTCTGAG 60.739 60.0 8.07 5.42 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.772118 AACCCAGAAGGAGGTGGT 57.228 55.556 0.00 0.00 39.89 4.16
18 19 2.464582 AACCCAGAAGGAGGTGGTC 58.535 57.895 0.00 0.00 39.89 4.02
19 20 0.401395 AACCCAGAAGGAGGTGGTCA 60.401 55.000 0.00 0.00 39.89 4.02
20 21 0.401395 ACCCAGAAGGAGGTGGTCAA 60.401 55.000 0.00 0.00 39.89 3.18
21 22 0.995024 CCCAGAAGGAGGTGGTCAAT 59.005 55.000 0.00 0.00 38.24 2.57
22 23 1.340405 CCCAGAAGGAGGTGGTCAATG 60.340 57.143 0.00 0.00 38.24 2.82
23 24 1.340405 CCAGAAGGAGGTGGTCAATGG 60.340 57.143 0.00 0.00 36.89 3.16
24 25 1.352352 CAGAAGGAGGTGGTCAATGGT 59.648 52.381 0.00 0.00 0.00 3.55
25 26 1.630878 AGAAGGAGGTGGTCAATGGTC 59.369 52.381 0.00 0.00 0.00 4.02
26 27 1.630878 GAAGGAGGTGGTCAATGGTCT 59.369 52.381 0.00 0.00 0.00 3.85
27 28 1.280457 AGGAGGTGGTCAATGGTCTC 58.720 55.000 0.00 0.00 0.00 3.36
28 29 0.253327 GGAGGTGGTCAATGGTCTCC 59.747 60.000 0.00 0.00 34.78 3.71
29 30 1.280457 GAGGTGGTCAATGGTCTCCT 58.720 55.000 0.00 0.00 0.00 3.69
30 31 1.208293 GAGGTGGTCAATGGTCTCCTC 59.792 57.143 8.27 8.27 34.30 3.71
31 32 0.984230 GGTGGTCAATGGTCTCCTCA 59.016 55.000 0.00 0.00 0.00 3.86
32 33 1.561542 GGTGGTCAATGGTCTCCTCAT 59.438 52.381 0.00 0.00 0.00 2.90
33 34 2.636830 GTGGTCAATGGTCTCCTCATG 58.363 52.381 0.00 0.00 0.00 3.07
34 35 2.026822 GTGGTCAATGGTCTCCTCATGT 60.027 50.000 0.00 0.00 0.00 3.21
35 36 2.644299 TGGTCAATGGTCTCCTCATGTT 59.356 45.455 0.00 0.00 0.00 2.71
36 37 3.012518 GGTCAATGGTCTCCTCATGTTG 58.987 50.000 0.00 0.00 0.00 3.33
37 38 3.560025 GGTCAATGGTCTCCTCATGTTGT 60.560 47.826 0.00 0.00 0.00 3.32
38 39 3.438087 GTCAATGGTCTCCTCATGTTGTG 59.562 47.826 0.00 0.00 0.00 3.33
39 40 2.119801 ATGGTCTCCTCATGTTGTGC 57.880 50.000 0.00 0.00 0.00 4.57
40 41 0.320683 TGGTCTCCTCATGTTGTGCG 60.321 55.000 0.00 0.00 0.00 5.34
41 42 1.639298 GGTCTCCTCATGTTGTGCGC 61.639 60.000 0.00 0.00 0.00 6.09
42 43 0.950555 GTCTCCTCATGTTGTGCGCA 60.951 55.000 5.66 5.66 0.00 6.09
43 44 0.671472 TCTCCTCATGTTGTGCGCAG 60.671 55.000 12.22 0.00 0.00 5.18
44 45 0.671472 CTCCTCATGTTGTGCGCAGA 60.671 55.000 12.22 6.80 0.00 4.26
45 46 0.250252 TCCTCATGTTGTGCGCAGAA 60.250 50.000 16.95 16.95 0.00 3.02
46 47 0.167470 CCTCATGTTGTGCGCAGAAG 59.833 55.000 21.49 9.46 0.00 2.85
47 48 0.167470 CTCATGTTGTGCGCAGAAGG 59.833 55.000 21.49 13.12 0.00 3.46
48 49 1.210931 CATGTTGTGCGCAGAAGGG 59.789 57.895 21.49 9.18 0.00 3.95
49 50 1.973281 ATGTTGTGCGCAGAAGGGG 60.973 57.895 21.49 0.00 0.00 4.79
56 57 4.988598 CGCAGAAGGGGCACGTGT 62.989 66.667 18.38 0.00 0.00 4.49
57 58 3.050275 GCAGAAGGGGCACGTGTC 61.050 66.667 18.38 15.79 0.00 3.67
58 59 2.738521 CAGAAGGGGCACGTGTCG 60.739 66.667 18.38 0.00 0.00 4.35
59 60 3.231736 AGAAGGGGCACGTGTCGT 61.232 61.111 18.38 8.77 42.36 4.34
70 71 2.672961 ACGTGTCGTGATGATCCAAT 57.327 45.000 0.00 0.00 39.18 3.16
71 72 2.540515 ACGTGTCGTGATGATCCAATC 58.459 47.619 0.00 0.00 39.18 2.67
72 73 1.860950 CGTGTCGTGATGATCCAATCC 59.139 52.381 0.00 0.00 0.00 3.01
73 74 2.738321 CGTGTCGTGATGATCCAATCCA 60.738 50.000 0.00 0.00 0.00 3.41
74 75 2.609459 GTGTCGTGATGATCCAATCCAC 59.391 50.000 0.00 0.00 0.00 4.02
75 76 1.860950 GTCGTGATGATCCAATCCACG 59.139 52.381 0.00 0.00 34.89 4.94
76 77 0.583438 CGTGATGATCCAATCCACGC 59.417 55.000 0.00 0.00 30.37 5.34
77 78 0.947244 GTGATGATCCAATCCACGCC 59.053 55.000 0.00 0.00 0.00 5.68
78 79 0.839277 TGATGATCCAATCCACGCCT 59.161 50.000 0.00 0.00 0.00 5.52
79 80 2.046292 TGATGATCCAATCCACGCCTA 58.954 47.619 0.00 0.00 0.00 3.93
80 81 2.037641 TGATGATCCAATCCACGCCTAG 59.962 50.000 0.00 0.00 0.00 3.02
81 82 0.106708 TGATCCAATCCACGCCTAGC 59.893 55.000 0.00 0.00 0.00 3.42
93 94 2.483441 GCCTAGCGAGTCTGTCAGA 58.517 57.895 0.00 0.00 0.00 3.27
94 95 0.811915 GCCTAGCGAGTCTGTCAGAA 59.188 55.000 3.51 0.00 0.00 3.02
95 96 1.202245 GCCTAGCGAGTCTGTCAGAAG 60.202 57.143 3.51 0.61 0.00 2.85
96 97 2.088423 CCTAGCGAGTCTGTCAGAAGT 58.912 52.381 3.51 0.00 0.00 3.01
97 98 2.096819 CCTAGCGAGTCTGTCAGAAGTC 59.903 54.545 3.51 3.87 0.00 3.01
98 99 1.904287 AGCGAGTCTGTCAGAAGTCT 58.096 50.000 3.51 0.00 0.00 3.24
99 100 3.060736 AGCGAGTCTGTCAGAAGTCTA 57.939 47.619 3.51 0.00 0.00 2.59
100 101 3.413327 AGCGAGTCTGTCAGAAGTCTAA 58.587 45.455 3.51 0.00 0.00 2.10
101 102 3.189702 AGCGAGTCTGTCAGAAGTCTAAC 59.810 47.826 3.51 0.00 0.00 2.34
102 103 3.058155 GCGAGTCTGTCAGAAGTCTAACA 60.058 47.826 3.51 0.00 0.00 2.41
103 104 4.380023 GCGAGTCTGTCAGAAGTCTAACAT 60.380 45.833 3.51 0.00 0.00 2.71
104 105 5.328691 CGAGTCTGTCAGAAGTCTAACATC 58.671 45.833 3.51 0.00 0.00 3.06
105 106 5.123186 CGAGTCTGTCAGAAGTCTAACATCT 59.877 44.000 3.51 0.00 0.00 2.90
106 107 6.314152 CGAGTCTGTCAGAAGTCTAACATCTA 59.686 42.308 3.51 0.00 0.00 1.98
107 108 7.011950 CGAGTCTGTCAGAAGTCTAACATCTAT 59.988 40.741 3.51 0.00 0.00 1.98
108 109 8.588290 AGTCTGTCAGAAGTCTAACATCTATT 57.412 34.615 3.51 0.00 0.00 1.73
109 110 8.465999 AGTCTGTCAGAAGTCTAACATCTATTG 58.534 37.037 3.51 0.00 0.00 1.90
110 111 8.247562 GTCTGTCAGAAGTCTAACATCTATTGT 58.752 37.037 3.51 0.00 41.53 2.71
111 112 9.462606 TCTGTCAGAAGTCTAACATCTATTGTA 57.537 33.333 0.00 0.00 37.68 2.41
112 113 9.729023 CTGTCAGAAGTCTAACATCTATTGTAG 57.271 37.037 0.00 0.00 37.68 2.74
113 114 8.687242 TGTCAGAAGTCTAACATCTATTGTAGG 58.313 37.037 0.00 0.00 37.68 3.18
114 115 8.138712 GTCAGAAGTCTAACATCTATTGTAGGG 58.861 40.741 0.00 0.00 37.68 3.53
115 116 7.839705 TCAGAAGTCTAACATCTATTGTAGGGT 59.160 37.037 0.00 0.00 37.68 4.34
116 117 7.923344 CAGAAGTCTAACATCTATTGTAGGGTG 59.077 40.741 0.00 0.00 37.68 4.61
117 118 7.839705 AGAAGTCTAACATCTATTGTAGGGTGA 59.160 37.037 0.00 0.00 37.68 4.02
118 119 8.554490 AAGTCTAACATCTATTGTAGGGTGAT 57.446 34.615 0.00 0.00 37.68 3.06
119 120 8.554490 AGTCTAACATCTATTGTAGGGTGATT 57.446 34.615 0.00 0.00 37.68 2.57
120 121 8.993424 AGTCTAACATCTATTGTAGGGTGATTT 58.007 33.333 0.00 0.00 37.68 2.17
125 126 9.920946 AACATCTATTGTAGGGTGATTTATGTT 57.079 29.630 0.00 0.00 37.68 2.71
126 127 9.920946 ACATCTATTGTAGGGTGATTTATGTTT 57.079 29.630 0.00 0.00 36.57 2.83
165 166 8.575649 AGGTGTAATATGTTCTAAAAGTTGGG 57.424 34.615 0.00 0.00 0.00 4.12
166 167 8.168058 AGGTGTAATATGTTCTAAAAGTTGGGT 58.832 33.333 0.00 0.00 0.00 4.51
167 168 9.452287 GGTGTAATATGTTCTAAAAGTTGGGTA 57.548 33.333 0.00 0.00 0.00 3.69
172 173 9.975218 AATATGTTCTAAAAGTTGGGTACTCAT 57.025 29.630 0.00 0.00 35.54 2.90
173 174 7.687941 ATGTTCTAAAAGTTGGGTACTCATG 57.312 36.000 0.00 0.00 35.54 3.07
174 175 6.597562 TGTTCTAAAAGTTGGGTACTCATGT 58.402 36.000 0.00 0.00 35.54 3.21
175 176 6.708949 TGTTCTAAAAGTTGGGTACTCATGTC 59.291 38.462 0.00 0.00 35.54 3.06
176 177 6.428083 TCTAAAAGTTGGGTACTCATGTCA 57.572 37.500 0.00 0.00 35.54 3.58
177 178 6.833041 TCTAAAAGTTGGGTACTCATGTCAA 58.167 36.000 0.00 0.00 35.54 3.18
178 179 7.284074 TCTAAAAGTTGGGTACTCATGTCAAA 58.716 34.615 0.00 0.00 35.54 2.69
179 180 6.783708 AAAAGTTGGGTACTCATGTCAAAA 57.216 33.333 0.00 0.00 35.54 2.44
180 181 6.976934 AAAGTTGGGTACTCATGTCAAAAT 57.023 33.333 0.00 0.00 35.54 1.82
181 182 6.976934 AAGTTGGGTACTCATGTCAAAATT 57.023 33.333 0.00 0.00 35.54 1.82
182 183 6.976934 AGTTGGGTACTCATGTCAAAATTT 57.023 33.333 0.00 0.00 28.23 1.82
183 184 8.472007 AAGTTGGGTACTCATGTCAAAATTTA 57.528 30.769 0.00 0.00 35.54 1.40
184 185 8.472007 AGTTGGGTACTCATGTCAAAATTTAA 57.528 30.769 0.00 0.00 28.23 1.52
185 186 8.919145 AGTTGGGTACTCATGTCAAAATTTAAA 58.081 29.630 0.00 0.00 28.23 1.52
186 187 9.535878 GTTGGGTACTCATGTCAAAATTTAAAA 57.464 29.630 0.00 0.00 0.00 1.52
196 197 9.956797 CATGTCAAAATTTAAAAATTCTAGCCG 57.043 29.630 1.36 0.00 37.62 5.52
197 198 8.013236 TGTCAAAATTTAAAAATTCTAGCCGC 57.987 30.769 1.36 0.00 37.62 6.53
198 199 7.653713 TGTCAAAATTTAAAAATTCTAGCCGCA 59.346 29.630 1.36 0.00 37.62 5.69
199 200 8.655970 GTCAAAATTTAAAAATTCTAGCCGCAT 58.344 29.630 1.36 0.00 37.62 4.73
200 201 9.862371 TCAAAATTTAAAAATTCTAGCCGCATA 57.138 25.926 1.36 0.00 37.62 3.14
206 207 8.905103 TTAAAAATTCTAGCCGCATAAAAGAC 57.095 30.769 0.00 0.00 0.00 3.01
207 208 4.795970 AATTCTAGCCGCATAAAAGACG 57.204 40.909 0.00 0.00 0.00 4.18
217 218 6.332504 CCGCATAAAAGACGGTATCATATC 57.667 41.667 0.00 0.00 42.01 1.63
218 219 5.867174 CCGCATAAAAGACGGTATCATATCA 59.133 40.000 0.00 0.00 42.01 2.15
219 220 6.535150 CCGCATAAAAGACGGTATCATATCAT 59.465 38.462 0.00 0.00 42.01 2.45
220 221 7.254117 CCGCATAAAAGACGGTATCATATCATC 60.254 40.741 0.00 0.00 42.01 2.92
221 222 7.489435 CGCATAAAAGACGGTATCATATCATCT 59.511 37.037 0.00 0.00 0.00 2.90
222 223 9.155975 GCATAAAAGACGGTATCATATCATCTT 57.844 33.333 0.00 0.00 0.00 2.40
269 270 4.157289 GCGTGTCGATATATTAGAAGGGGA 59.843 45.833 0.00 0.00 0.00 4.81
275 277 7.654520 TGTCGATATATTAGAAGGGGAAAAACG 59.345 37.037 0.00 0.00 0.00 3.60
316 318 2.652813 CGCGCGCCGACATAACTA 60.653 61.111 27.72 0.00 40.02 2.24
317 319 2.913265 CGCGCGCCGACATAACTAC 61.913 63.158 27.72 0.00 40.02 2.73
318 320 2.583164 GCGCGCCGACATAACTACC 61.583 63.158 23.24 0.00 0.00 3.18
319 321 1.947642 CGCGCCGACATAACTACCC 60.948 63.158 0.00 0.00 0.00 3.69
320 322 1.947642 GCGCCGACATAACTACCCG 60.948 63.158 0.00 0.00 0.00 5.28
321 323 1.434696 CGCCGACATAACTACCCGT 59.565 57.895 0.00 0.00 0.00 5.28
322 324 0.662619 CGCCGACATAACTACCCGTA 59.337 55.000 0.00 0.00 0.00 4.02
323 325 1.597937 CGCCGACATAACTACCCGTAC 60.598 57.143 0.00 0.00 0.00 3.67
324 326 1.405105 GCCGACATAACTACCCGTACA 59.595 52.381 0.00 0.00 0.00 2.90
325 327 2.159254 GCCGACATAACTACCCGTACAA 60.159 50.000 0.00 0.00 0.00 2.41
326 328 3.438360 CCGACATAACTACCCGTACAAC 58.562 50.000 0.00 0.00 0.00 3.32
327 329 3.100817 CGACATAACTACCCGTACAACG 58.899 50.000 0.00 0.00 42.11 4.10
355 357 4.351054 CAAAGGCCGGACCCAGCT 62.351 66.667 1.76 0.00 40.58 4.24
356 358 4.035102 AAAGGCCGGACCCAGCTC 62.035 66.667 1.76 0.00 40.58 4.09
359 361 4.554036 GGCCGGACCCAGCTCATC 62.554 72.222 5.05 0.00 0.00 2.92
360 362 3.474570 GCCGGACCCAGCTCATCT 61.475 66.667 5.05 0.00 0.00 2.90
361 363 2.134287 GCCGGACCCAGCTCATCTA 61.134 63.158 5.05 0.00 0.00 1.98
362 364 2.045280 CCGGACCCAGCTCATCTAG 58.955 63.158 0.00 0.00 0.00 2.43
363 365 0.757188 CCGGACCCAGCTCATCTAGT 60.757 60.000 0.00 0.00 0.00 2.57
364 366 1.478837 CCGGACCCAGCTCATCTAGTA 60.479 57.143 0.00 0.00 0.00 1.82
365 367 2.520069 CGGACCCAGCTCATCTAGTAT 58.480 52.381 0.00 0.00 0.00 2.12
366 368 2.490115 CGGACCCAGCTCATCTAGTATC 59.510 54.545 0.00 0.00 0.00 2.24
367 369 3.501349 GGACCCAGCTCATCTAGTATCA 58.499 50.000 0.00 0.00 0.00 2.15
368 370 4.093011 GGACCCAGCTCATCTAGTATCAT 58.907 47.826 0.00 0.00 0.00 2.45
369 371 5.265191 GGACCCAGCTCATCTAGTATCATA 58.735 45.833 0.00 0.00 0.00 2.15
370 372 5.896678 GGACCCAGCTCATCTAGTATCATAT 59.103 44.000 0.00 0.00 0.00 1.78
371 373 6.040391 GGACCCAGCTCATCTAGTATCATATC 59.960 46.154 0.00 0.00 0.00 1.63
372 374 6.497640 ACCCAGCTCATCTAGTATCATATCA 58.502 40.000 0.00 0.00 0.00 2.15
373 375 6.606796 ACCCAGCTCATCTAGTATCATATCAG 59.393 42.308 0.00 0.00 0.00 2.90
374 376 6.606796 CCCAGCTCATCTAGTATCATATCAGT 59.393 42.308 0.00 0.00 0.00 3.41
375 377 7.123997 CCCAGCTCATCTAGTATCATATCAGTT 59.876 40.741 0.00 0.00 0.00 3.16
376 378 8.530311 CCAGCTCATCTAGTATCATATCAGTTT 58.470 37.037 0.00 0.00 0.00 2.66
377 379 9.926158 CAGCTCATCTAGTATCATATCAGTTTT 57.074 33.333 0.00 0.00 0.00 2.43
405 407 9.542462 TTTCCGAACACTTGATATATTAGAAGG 57.458 33.333 3.57 0.00 0.00 3.46
406 408 7.667557 TCCGAACACTTGATATATTAGAAGGG 58.332 38.462 3.57 2.95 0.00 3.95
407 409 6.874134 CCGAACACTTGATATATTAGAAGGGG 59.126 42.308 7.07 2.31 0.00 4.79
408 410 7.256190 CCGAACACTTGATATATTAGAAGGGGA 60.256 40.741 7.07 0.00 0.00 4.81
409 411 8.148351 CGAACACTTGATATATTAGAAGGGGAA 58.852 37.037 7.07 0.00 0.00 3.97
410 412 9.847224 GAACACTTGATATATTAGAAGGGGAAA 57.153 33.333 7.07 0.00 0.00 3.13
412 414 9.853177 ACACTTGATATATTAGAAGGGGAAAAG 57.147 33.333 7.07 0.00 0.00 2.27
413 415 8.787852 CACTTGATATATTAGAAGGGGAAAAGC 58.212 37.037 3.57 0.00 0.00 3.51
414 416 7.661847 ACTTGATATATTAGAAGGGGAAAAGCG 59.338 37.037 3.57 0.00 0.00 4.68
415 417 7.311092 TGATATATTAGAAGGGGAAAAGCGA 57.689 36.000 0.00 0.00 0.00 4.93
416 418 7.741785 TGATATATTAGAAGGGGAAAAGCGAA 58.258 34.615 0.00 0.00 0.00 4.70
417 419 8.215050 TGATATATTAGAAGGGGAAAAGCGAAA 58.785 33.333 0.00 0.00 0.00 3.46
418 420 9.232473 GATATATTAGAAGGGGAAAAGCGAAAT 57.768 33.333 0.00 0.00 0.00 2.17
420 422 6.694877 ATTAGAAGGGGAAAAGCGAAATAC 57.305 37.500 0.00 0.00 0.00 1.89
421 423 4.028993 AGAAGGGGAAAAGCGAAATACA 57.971 40.909 0.00 0.00 0.00 2.29
422 424 3.756963 AGAAGGGGAAAAGCGAAATACAC 59.243 43.478 0.00 0.00 0.00 2.90
423 425 3.149005 AGGGGAAAAGCGAAATACACA 57.851 42.857 0.00 0.00 0.00 3.72
424 426 3.081804 AGGGGAAAAGCGAAATACACAG 58.918 45.455 0.00 0.00 0.00 3.66
425 427 2.817844 GGGGAAAAGCGAAATACACAGT 59.182 45.455 0.00 0.00 0.00 3.55
426 428 3.365969 GGGGAAAAGCGAAATACACAGTG 60.366 47.826 0.00 0.00 0.00 3.66
427 429 3.500680 GGGAAAAGCGAAATACACAGTGA 59.499 43.478 7.81 0.00 0.00 3.41
428 430 4.156008 GGGAAAAGCGAAATACACAGTGAT 59.844 41.667 7.81 0.00 0.00 3.06
429 431 5.088739 GGAAAAGCGAAATACACAGTGATG 58.911 41.667 7.81 0.00 0.00 3.07
430 432 5.334879 GGAAAAGCGAAATACACAGTGATGT 60.335 40.000 7.81 0.05 36.56 3.06
431 433 4.668576 AAGCGAAATACACAGTGATGTG 57.331 40.909 7.81 6.83 44.74 3.21
432 434 3.925379 AGCGAAATACACAGTGATGTGA 58.075 40.909 14.85 0.04 42.02 3.58
433 435 4.314961 AGCGAAATACACAGTGATGTGAA 58.685 39.130 14.85 0.00 42.02 3.18
434 436 4.389992 AGCGAAATACACAGTGATGTGAAG 59.610 41.667 14.85 0.00 42.02 3.02
435 437 4.152402 GCGAAATACACAGTGATGTGAAGT 59.848 41.667 14.85 0.00 42.02 3.01
436 438 5.334105 GCGAAATACACAGTGATGTGAAGTT 60.334 40.000 14.85 5.41 42.02 2.66
437 439 6.073369 CGAAATACACAGTGATGTGAAGTTG 58.927 40.000 14.85 0.00 42.02 3.16
438 440 5.362556 AATACACAGTGATGTGAAGTTGC 57.637 39.130 14.85 0.00 42.02 4.17
439 441 1.599071 ACACAGTGATGTGAAGTTGCG 59.401 47.619 14.85 0.00 42.02 4.85
440 442 0.588252 ACAGTGATGTGAAGTTGCGC 59.412 50.000 0.00 0.00 0.00 6.09
441 443 0.451628 CAGTGATGTGAAGTTGCGCG 60.452 55.000 0.00 0.00 0.00 6.86
442 444 1.793613 GTGATGTGAAGTTGCGCGC 60.794 57.895 27.26 27.26 0.00 6.86
443 445 2.250237 TGATGTGAAGTTGCGCGCA 61.250 52.632 33.09 33.09 0.00 6.09
444 446 1.793613 GATGTGAAGTTGCGCGCAC 60.794 57.895 36.72 27.30 0.00 5.34
445 447 3.254014 ATGTGAAGTTGCGCGCACC 62.254 57.895 36.72 29.28 0.00 5.01
448 450 4.719616 GAAGTTGCGCGCACCGAC 62.720 66.667 36.72 29.01 40.02 4.79
451 453 3.483665 GTTGCGCGCACCGACATA 61.484 61.111 36.72 15.39 40.02 2.29
498 500 4.554036 GGCCGGACCCAGCTCATC 62.554 72.222 5.05 0.00 0.00 2.92
532 534 4.142708 CGACTATCTCTAGATCGCTTGCAT 60.143 45.833 0.00 0.00 36.05 3.96
533 535 5.064071 CGACTATCTCTAGATCGCTTGCATA 59.936 44.000 0.00 0.00 36.05 3.14
534 536 6.402658 CGACTATCTCTAGATCGCTTGCATAA 60.403 42.308 0.00 0.00 36.05 1.90
535 537 6.851609 ACTATCTCTAGATCGCTTGCATAAG 58.148 40.000 0.00 0.00 36.05 1.73
536 538 5.720371 ATCTCTAGATCGCTTGCATAAGT 57.280 39.130 0.00 0.00 36.27 2.24
537 539 5.114785 TCTCTAGATCGCTTGCATAAGTC 57.885 43.478 0.00 0.00 36.27 3.01
538 540 4.824537 TCTCTAGATCGCTTGCATAAGTCT 59.175 41.667 0.00 0.00 36.27 3.24
539 541 5.049060 TCTCTAGATCGCTTGCATAAGTCTC 60.049 44.000 0.00 0.00 36.27 3.36
540 542 3.104843 AGATCGCTTGCATAAGTCTCC 57.895 47.619 0.00 0.00 36.27 3.71
541 543 2.139118 GATCGCTTGCATAAGTCTCCC 58.861 52.381 0.00 0.00 36.27 4.30
611 613 0.625849 CTAGGGGTGCCATTGAAGGT 59.374 55.000 0.00 0.00 0.00 3.50
613 615 2.046285 GGGGTGCCATTGAAGGTCG 61.046 63.158 0.00 0.00 0.00 4.79
629 809 4.214383 CGTGGCATTGCGCTCGAG 62.214 66.667 9.73 8.45 41.91 4.04
633 813 4.233635 GCATTGCGCTCGAGCCAG 62.234 66.667 30.66 19.04 37.91 4.85
645 825 1.066143 TCGAGCCAGATCTTCCAAACC 60.066 52.381 0.00 0.00 0.00 3.27
745 962 2.964174 CAAGATTGCAGCGGCCAA 59.036 55.556 6.32 1.14 40.13 4.52
769 990 2.912771 TGGTTGACCATATTGCGGTAG 58.087 47.619 0.00 0.00 42.01 3.18
770 991 2.237643 TGGTTGACCATATTGCGGTAGT 59.762 45.455 0.00 0.00 42.01 2.73
771 992 3.451540 TGGTTGACCATATTGCGGTAGTA 59.548 43.478 0.00 0.00 42.01 1.82
772 993 3.805971 GGTTGACCATATTGCGGTAGTAC 59.194 47.826 0.00 0.00 36.69 2.73
790 1011 5.474578 AGTACCATATCATCTGTTCGCAT 57.525 39.130 0.00 0.00 0.00 4.73
956 1191 1.594397 GCAAGACCTTTTGTTTGCAGC 59.406 47.619 3.43 0.00 43.93 5.25
962 1197 2.266554 CCTTTTGTTTGCAGCGAACAA 58.733 42.857 29.86 29.86 43.40 2.83
980 1222 4.974103 ACAAGATTTTCGAGTTCAGACG 57.026 40.909 0.00 0.00 0.00 4.18
1050 1292 0.460284 CTCGATGCGCCAAACCTAGT 60.460 55.000 4.18 0.00 0.00 2.57
1051 1293 0.818938 TCGATGCGCCAAACCTAGTA 59.181 50.000 4.18 0.00 0.00 1.82
1052 1294 1.202371 TCGATGCGCCAAACCTAGTAG 60.202 52.381 4.18 0.00 0.00 2.57
1053 1295 0.938008 GATGCGCCAAACCTAGTAGC 59.062 55.000 4.18 0.00 0.00 3.58
1054 1296 0.251916 ATGCGCCAAACCTAGTAGCA 59.748 50.000 4.18 0.00 37.54 3.49
1081 1323 2.292267 GATCACTGGCCATTCGTTCAT 58.708 47.619 5.51 0.00 0.00 2.57
1090 1332 2.159338 GCCATTCGTTCATGAAGCATGT 60.159 45.455 8.80 0.00 41.98 3.21
1091 1333 3.674138 GCCATTCGTTCATGAAGCATGTT 60.674 43.478 8.80 0.00 41.98 2.71
1123 1365 2.967076 CGTCCCGAATCATGGCGG 60.967 66.667 13.36 13.36 46.80 6.13
1159 1401 1.014564 GGTCTCCCGCTTGTTCTTCG 61.015 60.000 0.00 0.00 0.00 3.79
1353 1595 4.681978 GCGTCCCACGTTCAGGCT 62.682 66.667 0.00 0.00 44.73 4.58
1722 1964 1.666553 CGTGGACGCCAAGCTTGTA 60.667 57.895 24.35 1.69 34.18 2.41
1893 2135 2.342279 CCCAAGTCCGTCGAGCAA 59.658 61.111 0.00 0.00 0.00 3.91
1980 2222 1.593209 GGTGCTCGTCCAACGACAA 60.593 57.895 0.00 0.00 46.73 3.18
2292 2537 1.722034 GCCTCATGATCCTAGACCCA 58.278 55.000 0.00 0.00 0.00 4.51
2319 2564 3.961838 GAACATGGCCCGCGTACCA 62.962 63.158 18.30 18.30 41.06 3.25
2370 2615 0.871722 GCGTGCTGTACAACATCCAA 59.128 50.000 1.65 0.00 0.00 3.53
2386 2631 6.065976 ACATCCAATACATGAACTTCTGGA 57.934 37.500 0.00 3.06 36.02 3.86
2588 2842 7.362747 CGAGAAGTACTACAAGGGTAACTTCAT 60.363 40.741 15.96 6.64 43.47 2.57
2590 2844 5.731591 AGTACTACAAGGGTAACTTCATGC 58.268 41.667 0.00 0.00 37.29 4.06
2616 2870 1.481871 CCATGGCCAAGCTTCAGATT 58.518 50.000 10.96 0.00 0.00 2.40
2643 2897 3.119602 CCGACGACTACTTCAGGAATGAA 60.120 47.826 0.00 0.00 0.00 2.57
2673 2927 1.708193 CGCCGCTTGATGCTGATGAA 61.708 55.000 0.00 0.00 40.11 2.57
2678 2932 2.512885 GCTTGATGCTGATGAACAACG 58.487 47.619 0.00 0.00 38.95 4.10
2687 2941 3.181526 GCTGATGAACAACGACTGATCAC 60.182 47.826 0.00 0.00 39.41 3.06
2692 2946 1.244816 ACAACGACTGATCACGAGGA 58.755 50.000 12.18 0.00 0.00 3.71
2705 2959 1.592669 CGAGGAATGTGGCGCCTAG 60.593 63.158 29.70 1.00 30.70 3.02
2712 2966 1.060163 ATGTGGCGCCTAGGGGTTAT 61.060 55.000 29.70 12.55 34.45 1.89
2716 2970 1.598130 GCGCCTAGGGGTTATGCTG 60.598 63.158 25.32 1.05 34.45 4.41
2729 2983 5.063880 GGGTTATGCTGATCCTATTTCGTT 58.936 41.667 0.00 0.00 0.00 3.85
2730 2984 6.228258 GGGTTATGCTGATCCTATTTCGTTA 58.772 40.000 0.00 0.00 0.00 3.18
2733 2987 8.068380 GGTTATGCTGATCCTATTTCGTTAAAC 58.932 37.037 0.00 0.00 0.00 2.01
2791 3048 5.564213 TGTGTATATTCGGCGAAAATACG 57.436 39.130 27.40 0.00 0.00 3.06
2804 3061 6.247176 GGCGAAAATACGGTTTAAAATCGTA 58.753 36.000 20.06 20.06 42.34 3.43
2820 3077 5.907197 AATCGTAATTTAGCGGATGACAG 57.093 39.130 0.00 0.00 0.00 3.51
2821 3078 4.642445 TCGTAATTTAGCGGATGACAGA 57.358 40.909 0.00 0.00 0.00 3.41
2822 3079 4.357142 TCGTAATTTAGCGGATGACAGAC 58.643 43.478 0.00 0.00 0.00 3.51
2852 3109 8.618677 CAGAATATATGCATCCGATTTTATGCT 58.381 33.333 0.19 0.00 46.87 3.79
2854 3111 8.743085 AATATATGCATCCGATTTTATGCTCT 57.257 30.769 0.19 0.00 46.87 4.09
2858 3116 4.751600 TGCATCCGATTTTATGCTCTAGTG 59.248 41.667 8.57 0.00 46.87 2.74
2891 3162 4.097135 TGGTGTCATGTAGTTTGTTGGTTG 59.903 41.667 0.00 0.00 0.00 3.77
2893 3164 5.297278 GGTGTCATGTAGTTTGTTGGTTGTA 59.703 40.000 0.00 0.00 0.00 2.41
2900 3171 7.392494 TGTAGTTTGTTGGTTGTATGTCAAA 57.608 32.000 0.00 0.00 37.81 2.69
2906 3177 9.141400 GTTTGTTGGTTGTATGTCAAACTTAAA 57.859 29.630 10.10 0.00 43.52 1.52
2935 3295 7.360575 ACTACATCAGTTTAAAATCCGTGTC 57.639 36.000 0.00 0.00 31.59 3.67
2943 3303 7.820386 TCAGTTTAAAATCCGTGTCTGCTAATA 59.180 33.333 0.00 0.00 0.00 0.98
2985 3355 0.458669 CCATTCATTGCAGAGCACCC 59.541 55.000 0.00 0.00 38.71 4.61
2986 3356 1.471119 CATTCATTGCAGAGCACCCT 58.529 50.000 0.00 0.00 38.71 4.34
2990 3878 0.035725 CATTGCAGAGCACCCTCAGA 60.036 55.000 0.00 0.00 38.71 3.27
2993 3881 1.196766 TGCAGAGCACCCTCAGACAT 61.197 55.000 0.00 0.00 40.68 3.06
2998 3886 0.837691 AGCACCCTCAGACATGGACA 60.838 55.000 0.00 0.00 0.00 4.02
3045 3933 2.054453 GGCCATCAGGGAACAAGCC 61.054 63.158 0.00 0.00 40.01 4.35
3068 3964 2.600769 ACGAAGCCGAGGGTGACT 60.601 61.111 0.00 0.00 39.50 3.41
3069 3965 2.125912 CGAAGCCGAGGGTGACTG 60.126 66.667 0.00 0.00 38.22 3.51
3075 3971 1.087501 GCCGAGGGTGACTGAAAATC 58.912 55.000 0.00 0.00 0.00 2.17
3083 3979 6.371548 CGAGGGTGACTGAAAATCATCTTTTA 59.628 38.462 0.00 0.00 0.00 1.52
3151 4053 4.694509 CCTGCTTTGCCTGATAGACATATC 59.305 45.833 0.00 0.00 38.66 1.63
3160 4062 5.694006 GCCTGATAGACATATCTGTTGTCAC 59.306 44.000 6.59 0.00 44.73 3.67
3163 4065 8.579863 CCTGATAGACATATCTGTTGTCACATA 58.420 37.037 6.59 0.00 44.73 2.29
3192 4094 6.038714 ACAAAGAACACTCTGAGAATGGTTTC 59.961 38.462 12.44 1.78 30.03 2.78
3213 4115 3.263170 TCCCGATTTCAGAAATGGACTGA 59.737 43.478 17.14 9.12 41.70 3.41
3236 4138 3.327757 AGTGTGTAAAGATGGAGCCAGAA 59.672 43.478 0.00 0.00 0.00 3.02
3237 4139 3.437049 GTGTGTAAAGATGGAGCCAGAAC 59.563 47.826 0.00 0.00 0.00 3.01
3238 4140 3.010420 GTGTAAAGATGGAGCCAGAACC 58.990 50.000 0.00 0.00 0.00 3.62
3239 4141 2.026262 TGTAAAGATGGAGCCAGAACCC 60.026 50.000 0.00 0.00 0.00 4.11
3240 4142 1.075601 AAAGATGGAGCCAGAACCCA 58.924 50.000 0.00 0.00 0.00 4.51
3241 4143 0.622665 AAGATGGAGCCAGAACCCAG 59.377 55.000 0.00 0.00 32.90 4.45
3242 4144 1.225704 GATGGAGCCAGAACCCAGG 59.774 63.158 0.00 0.00 32.90 4.45
3311 4213 3.144506 AGCCATGATTTGAGATTAGCCG 58.855 45.455 0.00 0.00 0.00 5.52
3312 4214 2.227388 GCCATGATTTGAGATTAGCCGG 59.773 50.000 0.00 0.00 0.00 6.13
3313 4215 3.743521 CCATGATTTGAGATTAGCCGGA 58.256 45.455 5.05 0.00 0.00 5.14
3314 4216 4.136796 CCATGATTTGAGATTAGCCGGAA 58.863 43.478 5.05 0.00 0.00 4.30
3337 4262 9.260002 GGAATGATCGGTTTTATATTTTGCATT 57.740 29.630 0.00 0.00 0.00 3.56
3339 4264 7.462109 TGATCGGTTTTATATTTTGCATTGC 57.538 32.000 0.46 0.46 0.00 3.56
3340 4265 6.478344 TGATCGGTTTTATATTTTGCATTGCC 59.522 34.615 6.12 0.00 0.00 4.52
3341 4266 4.800993 TCGGTTTTATATTTTGCATTGCCG 59.199 37.500 6.12 0.00 36.14 5.69
3342 4267 4.026145 CGGTTTTATATTTTGCATTGCCGG 60.026 41.667 6.12 0.00 0.00 6.13
3343 4268 5.112686 GGTTTTATATTTTGCATTGCCGGA 58.887 37.500 5.05 0.00 0.00 5.14
3344 4269 5.582665 GGTTTTATATTTTGCATTGCCGGAA 59.417 36.000 5.05 0.00 0.00 4.30
3345 4270 6.092807 GGTTTTATATTTTGCATTGCCGGAAA 59.907 34.615 5.05 0.00 0.00 3.13
3346 4271 6.900568 TTTATATTTTGCATTGCCGGAAAG 57.099 33.333 5.05 0.00 0.00 2.62
3347 4272 4.734398 ATATTTTGCATTGCCGGAAAGA 57.266 36.364 5.05 3.01 0.00 2.52
3348 4273 3.615224 ATTTTGCATTGCCGGAAAGAT 57.385 38.095 5.05 0.00 0.00 2.40
3349 4274 2.652941 TTTGCATTGCCGGAAAGATC 57.347 45.000 5.05 0.00 0.00 2.75
3350 4275 1.543607 TTGCATTGCCGGAAAGATCA 58.456 45.000 5.05 0.00 0.00 2.92
3351 4276 1.766494 TGCATTGCCGGAAAGATCAT 58.234 45.000 5.05 0.00 0.00 2.45
3352 4277 1.677576 TGCATTGCCGGAAAGATCATC 59.322 47.619 5.05 0.00 0.00 2.92
3353 4278 1.952296 GCATTGCCGGAAAGATCATCT 59.048 47.619 5.05 0.00 0.00 2.90
3405 4346 1.298667 GTGCATACACGGGGTCCTT 59.701 57.895 0.00 0.00 36.98 3.36
3414 4355 0.617820 ACGGGGTCCTTGTGAGCTAT 60.618 55.000 0.00 0.00 41.34 2.97
3427 4368 7.065324 TCCTTGTGAGCTATTTTGTAATTACGG 59.935 37.037 10.92 0.76 0.00 4.02
3455 4396 3.871006 GCTTTGGTGGGACAAAAAGAAAG 59.129 43.478 8.86 0.00 43.04 2.62
3481 4422 2.577606 ACCCAATGTCCGATTCAACA 57.422 45.000 0.00 0.00 0.00 3.33
3539 4480 7.521748 GCTTTAAAAGTACTCCCAAAGAACTCC 60.522 40.741 19.44 5.30 0.00 3.85
3542 4483 6.758806 AAAGTACTCCCAAAGAACTCCTAA 57.241 37.500 0.00 0.00 0.00 2.69
3599 4571 2.742053 GTGTCTCCTTTCTTTGCGCATA 59.258 45.455 12.75 5.38 0.00 3.14
3656 4628 3.782523 ACACAGTCCAACCATATCCATCT 59.217 43.478 0.00 0.00 0.00 2.90
3659 4631 5.305386 CACAGTCCAACCATATCCATCTCTA 59.695 44.000 0.00 0.00 0.00 2.43
3664 4636 8.506083 AGTCCAACCATATCCATCTCTAATTTT 58.494 33.333 0.00 0.00 0.00 1.82
3710 4688 8.723942 AATCATATGTAGGTTCAAAGTCTGAC 57.276 34.615 1.90 0.00 32.21 3.51
3712 4690 7.676004 TCATATGTAGGTTCAAAGTCTGACAA 58.324 34.615 10.88 0.00 32.21 3.18
3714 4692 5.607939 TGTAGGTTCAAAGTCTGACAAGA 57.392 39.130 10.88 1.83 32.21 3.02
3720 4698 5.278660 GGTTCAAAGTCTGACAAGATGCATT 60.279 40.000 10.88 0.00 34.13 3.56
3728 4706 3.256558 TGACAAGATGCATTCGAGTGAG 58.743 45.455 12.67 0.00 0.00 3.51
3732 4710 0.807667 GATGCATTCGAGTGAGGCGT 60.808 55.000 12.67 0.00 0.00 5.68
3736 4714 3.989698 ATTCGAGTGAGGCGTGCCG 62.990 63.158 5.02 0.00 41.95 5.69
3750 4728 0.673644 GTGCCGCACACTATGGTCTT 60.674 55.000 18.79 0.00 46.41 3.01
3752 4730 1.165270 GCCGCACACTATGGTCTTTT 58.835 50.000 0.00 0.00 0.00 2.27
3788 4767 5.870978 GCAAAAGGCTTGTGTATCATTTCAT 59.129 36.000 18.33 0.00 40.25 2.57
3789 4768 6.369615 GCAAAAGGCTTGTGTATCATTTCATT 59.630 34.615 18.33 0.00 40.25 2.57
3795 4774 9.851686 AGGCTTGTGTATCATTTCATTAATAGA 57.148 29.630 0.00 0.00 0.00 1.98
3818 4797 8.139521 AGAAAGAGTTTAGAAAAAGTACGTGG 57.860 34.615 0.00 0.00 0.00 4.94
3819 4798 6.856135 AAGAGTTTAGAAAAAGTACGTGGG 57.144 37.500 0.00 0.00 0.00 4.61
3820 4799 4.753610 AGAGTTTAGAAAAAGTACGTGGGC 59.246 41.667 0.00 0.00 0.00 5.36
3821 4800 4.453751 AGTTTAGAAAAAGTACGTGGGCA 58.546 39.130 0.00 0.00 0.00 5.36
3822 4801 4.883006 AGTTTAGAAAAAGTACGTGGGCAA 59.117 37.500 0.00 0.00 0.00 4.52
3823 4802 5.008316 AGTTTAGAAAAAGTACGTGGGCAAG 59.992 40.000 0.00 0.00 0.00 4.01
3824 4803 2.227194 AGAAAAAGTACGTGGGCAAGG 58.773 47.619 0.00 0.00 0.00 3.61
3825 4804 1.268625 GAAAAAGTACGTGGGCAAGGG 59.731 52.381 0.00 0.00 0.00 3.95
3826 4805 0.538746 AAAAGTACGTGGGCAAGGGG 60.539 55.000 0.00 0.00 0.00 4.79
3827 4806 2.420466 AAAGTACGTGGGCAAGGGGG 62.420 60.000 0.00 0.00 0.00 5.40
3828 4807 3.324108 GTACGTGGGCAAGGGGGA 61.324 66.667 0.00 0.00 0.00 4.81
3829 4808 3.006728 TACGTGGGCAAGGGGGAG 61.007 66.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.401395 TGACCACCTCCTTCTGGGTT 60.401 55.000 0.00 0.00 32.95 4.11
1 2 0.401395 TTGACCACCTCCTTCTGGGT 60.401 55.000 0.00 0.00 36.07 4.51
2 3 0.995024 ATTGACCACCTCCTTCTGGG 59.005 55.000 0.00 0.00 0.00 4.45
3 4 1.340405 CCATTGACCACCTCCTTCTGG 60.340 57.143 0.00 0.00 0.00 3.86
4 5 1.352352 ACCATTGACCACCTCCTTCTG 59.648 52.381 0.00 0.00 0.00 3.02
5 6 1.630878 GACCATTGACCACCTCCTTCT 59.369 52.381 0.00 0.00 0.00 2.85
6 7 1.630878 AGACCATTGACCACCTCCTTC 59.369 52.381 0.00 0.00 0.00 3.46
7 8 1.630878 GAGACCATTGACCACCTCCTT 59.369 52.381 0.00 0.00 0.00 3.36
8 9 1.280457 GAGACCATTGACCACCTCCT 58.720 55.000 0.00 0.00 0.00 3.69
9 10 0.253327 GGAGACCATTGACCACCTCC 59.747 60.000 0.00 0.00 34.21 4.30
10 11 1.208293 GAGGAGACCATTGACCACCTC 59.792 57.143 0.00 0.00 36.23 3.85
11 12 1.280457 GAGGAGACCATTGACCACCT 58.720 55.000 0.00 0.00 0.00 4.00
12 13 0.984230 TGAGGAGACCATTGACCACC 59.016 55.000 0.00 0.00 0.00 4.61
13 14 2.026822 ACATGAGGAGACCATTGACCAC 60.027 50.000 0.00 0.00 0.00 4.16
14 15 2.269023 ACATGAGGAGACCATTGACCA 58.731 47.619 0.00 0.00 0.00 4.02
15 16 3.012518 CAACATGAGGAGACCATTGACC 58.987 50.000 0.00 0.00 0.00 4.02
16 17 3.438087 CACAACATGAGGAGACCATTGAC 59.562 47.826 0.00 0.00 0.00 3.18
17 18 3.678289 CACAACATGAGGAGACCATTGA 58.322 45.455 0.00 0.00 0.00 2.57
18 19 2.163010 GCACAACATGAGGAGACCATTG 59.837 50.000 0.00 0.00 0.00 2.82
19 20 2.440409 GCACAACATGAGGAGACCATT 58.560 47.619 0.00 0.00 0.00 3.16
20 21 1.676916 CGCACAACATGAGGAGACCAT 60.677 52.381 0.00 0.00 0.00 3.55
21 22 0.320683 CGCACAACATGAGGAGACCA 60.321 55.000 0.00 0.00 0.00 4.02
22 23 1.639298 GCGCACAACATGAGGAGACC 61.639 60.000 0.30 0.00 0.00 3.85
23 24 0.950555 TGCGCACAACATGAGGAGAC 60.951 55.000 5.66 0.00 0.00 3.36
24 25 1.370810 TGCGCACAACATGAGGAGA 59.629 52.632 5.66 0.00 0.00 3.71
25 26 0.671472 TCTGCGCACAACATGAGGAG 60.671 55.000 5.66 0.00 46.03 3.69
26 27 0.250252 TTCTGCGCACAACATGAGGA 60.250 50.000 5.66 0.00 0.00 3.71
27 28 0.167470 CTTCTGCGCACAACATGAGG 59.833 55.000 5.66 0.00 0.00 3.86
28 29 0.167470 CCTTCTGCGCACAACATGAG 59.833 55.000 5.66 0.00 0.00 2.90
29 30 1.236616 CCCTTCTGCGCACAACATGA 61.237 55.000 5.66 0.00 0.00 3.07
30 31 1.210931 CCCTTCTGCGCACAACATG 59.789 57.895 5.66 0.00 0.00 3.21
31 32 1.973281 CCCCTTCTGCGCACAACAT 60.973 57.895 5.66 0.00 0.00 2.71
32 33 2.594303 CCCCTTCTGCGCACAACA 60.594 61.111 5.66 0.00 0.00 3.33
33 34 4.043200 GCCCCTTCTGCGCACAAC 62.043 66.667 5.66 0.00 0.00 3.32
34 35 4.577677 TGCCCCTTCTGCGCACAA 62.578 61.111 5.66 0.42 0.00 3.33
39 40 4.988598 ACACGTGCCCCTTCTGCG 62.989 66.667 17.22 0.00 0.00 5.18
40 41 3.050275 GACACGTGCCCCTTCTGC 61.050 66.667 17.22 0.00 0.00 4.26
41 42 2.738521 CGACACGTGCCCCTTCTG 60.739 66.667 17.22 0.00 0.00 3.02
42 43 3.231736 ACGACACGTGCCCCTTCT 61.232 61.111 17.22 0.00 39.18 2.85
51 52 2.540515 GATTGGATCATCACGACACGT 58.459 47.619 0.00 0.00 42.36 4.49
52 53 1.860950 GGATTGGATCATCACGACACG 59.139 52.381 0.00 0.00 0.00 4.49
53 54 2.609459 GTGGATTGGATCATCACGACAC 59.391 50.000 0.00 0.00 0.00 3.67
54 55 2.905075 GTGGATTGGATCATCACGACA 58.095 47.619 0.00 0.00 0.00 4.35
58 59 0.947244 GGCGTGGATTGGATCATCAC 59.053 55.000 0.00 0.00 0.00 3.06
59 60 0.839277 AGGCGTGGATTGGATCATCA 59.161 50.000 0.00 0.00 0.00 3.07
60 61 2.693069 CTAGGCGTGGATTGGATCATC 58.307 52.381 0.00 0.00 0.00 2.92
61 62 1.271054 GCTAGGCGTGGATTGGATCAT 60.271 52.381 0.00 0.00 0.00 2.45
62 63 0.106708 GCTAGGCGTGGATTGGATCA 59.893 55.000 0.00 0.00 0.00 2.92
63 64 2.919971 GCTAGGCGTGGATTGGATC 58.080 57.895 0.00 0.00 0.00 3.36
75 76 0.811915 TTCTGACAGACTCGCTAGGC 59.188 55.000 4.15 0.00 0.00 3.93
76 77 2.088423 ACTTCTGACAGACTCGCTAGG 58.912 52.381 4.15 0.00 0.00 3.02
77 78 3.006940 AGACTTCTGACAGACTCGCTAG 58.993 50.000 4.15 1.20 0.00 3.42
78 79 3.060736 AGACTTCTGACAGACTCGCTA 57.939 47.619 4.15 0.00 0.00 4.26
79 80 1.904287 AGACTTCTGACAGACTCGCT 58.096 50.000 4.15 0.00 0.00 4.93
80 81 3.058155 TGTTAGACTTCTGACAGACTCGC 60.058 47.826 4.15 0.00 37.52 5.03
81 82 4.750952 TGTTAGACTTCTGACAGACTCG 57.249 45.455 4.15 0.00 37.52 4.18
82 83 6.509418 AGATGTTAGACTTCTGACAGACTC 57.491 41.667 4.15 2.99 44.05 3.36
83 84 8.465999 CAATAGATGTTAGACTTCTGACAGACT 58.534 37.037 4.15 11.99 44.05 3.24
84 85 8.247562 ACAATAGATGTTAGACTTCTGACAGAC 58.752 37.037 4.15 6.54 44.05 3.51
85 86 8.354711 ACAATAGATGTTAGACTTCTGACAGA 57.645 34.615 0.00 0.00 44.05 3.41
86 87 9.729023 CTACAATAGATGTTAGACTTCTGACAG 57.271 37.037 9.44 0.00 44.05 3.51
87 88 8.687242 CCTACAATAGATGTTAGACTTCTGACA 58.313 37.037 6.34 6.34 44.75 3.58
88 89 8.138712 CCCTACAATAGATGTTAGACTTCTGAC 58.861 40.741 6.71 0.00 43.63 3.51
89 90 7.839705 ACCCTACAATAGATGTTAGACTTCTGA 59.160 37.037 6.71 0.00 43.63 3.27
90 91 7.923344 CACCCTACAATAGATGTTAGACTTCTG 59.077 40.741 6.71 0.00 43.63 3.02
91 92 7.839705 TCACCCTACAATAGATGTTAGACTTCT 59.160 37.037 2.66 2.66 43.63 2.85
92 93 8.008513 TCACCCTACAATAGATGTTAGACTTC 57.991 38.462 0.00 0.00 43.63 3.01
93 94 7.973048 TCACCCTACAATAGATGTTAGACTT 57.027 36.000 0.00 0.00 43.63 3.01
94 95 8.554490 AATCACCCTACAATAGATGTTAGACT 57.446 34.615 0.00 0.00 43.63 3.24
99 100 9.920946 AACATAAATCACCCTACAATAGATGTT 57.079 29.630 0.00 0.00 43.63 2.71
100 101 9.920946 AAACATAAATCACCCTACAATAGATGT 57.079 29.630 0.00 0.00 46.36 3.06
139 140 9.675464 CCCAACTTTTAGAACATATTACACCTA 57.325 33.333 0.00 0.00 0.00 3.08
140 141 8.168058 ACCCAACTTTTAGAACATATTACACCT 58.832 33.333 0.00 0.00 0.00 4.00
141 142 8.344446 ACCCAACTTTTAGAACATATTACACC 57.656 34.615 0.00 0.00 0.00 4.16
146 147 9.975218 ATGAGTACCCAACTTTTAGAACATATT 57.025 29.630 0.00 0.00 39.07 1.28
147 148 9.396022 CATGAGTACCCAACTTTTAGAACATAT 57.604 33.333 0.00 0.00 39.07 1.78
148 149 8.380099 ACATGAGTACCCAACTTTTAGAACATA 58.620 33.333 0.00 0.00 39.07 2.29
149 150 7.231467 ACATGAGTACCCAACTTTTAGAACAT 58.769 34.615 0.00 0.00 39.07 2.71
150 151 6.597562 ACATGAGTACCCAACTTTTAGAACA 58.402 36.000 0.00 0.00 39.07 3.18
151 152 6.708949 TGACATGAGTACCCAACTTTTAGAAC 59.291 38.462 0.00 0.00 39.07 3.01
152 153 6.833041 TGACATGAGTACCCAACTTTTAGAA 58.167 36.000 0.00 0.00 39.07 2.10
153 154 6.428083 TGACATGAGTACCCAACTTTTAGA 57.572 37.500 0.00 0.00 39.07 2.10
154 155 7.504924 TTTGACATGAGTACCCAACTTTTAG 57.495 36.000 0.00 0.00 39.07 1.85
155 156 7.883391 TTTTGACATGAGTACCCAACTTTTA 57.117 32.000 0.00 0.00 39.07 1.52
156 157 6.783708 TTTTGACATGAGTACCCAACTTTT 57.216 33.333 0.00 0.00 39.07 2.27
157 158 6.976934 ATTTTGACATGAGTACCCAACTTT 57.023 33.333 0.00 0.00 39.07 2.66
158 159 6.976934 AATTTTGACATGAGTACCCAACTT 57.023 33.333 0.00 0.00 39.07 2.66
159 160 6.976934 AAATTTTGACATGAGTACCCAACT 57.023 33.333 0.00 0.00 42.80 3.16
160 161 9.535878 TTTTAAATTTTGACATGAGTACCCAAC 57.464 29.630 0.00 0.00 0.00 3.77
170 171 9.956797 CGGCTAGAATTTTTAAATTTTGACATG 57.043 29.630 0.00 0.00 38.64 3.21
171 172 8.655970 GCGGCTAGAATTTTTAAATTTTGACAT 58.344 29.630 0.00 0.00 38.64 3.06
172 173 7.653713 TGCGGCTAGAATTTTTAAATTTTGACA 59.346 29.630 0.00 0.00 38.64 3.58
173 174 8.013236 TGCGGCTAGAATTTTTAAATTTTGAC 57.987 30.769 0.00 0.00 38.64 3.18
174 175 8.770438 ATGCGGCTAGAATTTTTAAATTTTGA 57.230 26.923 0.00 0.00 38.64 2.69
180 181 9.349145 GTCTTTTATGCGGCTAGAATTTTTAAA 57.651 29.630 0.00 0.00 0.00 1.52
181 182 7.694784 CGTCTTTTATGCGGCTAGAATTTTTAA 59.305 33.333 0.00 0.00 0.00 1.52
182 183 7.184106 CGTCTTTTATGCGGCTAGAATTTTTA 58.816 34.615 0.00 0.00 0.00 1.52
183 184 6.027749 CGTCTTTTATGCGGCTAGAATTTTT 58.972 36.000 0.00 0.00 0.00 1.94
184 185 5.448632 CCGTCTTTTATGCGGCTAGAATTTT 60.449 40.000 0.00 0.00 38.99 1.82
185 186 4.035208 CCGTCTTTTATGCGGCTAGAATTT 59.965 41.667 0.00 0.00 38.99 1.82
186 187 3.560068 CCGTCTTTTATGCGGCTAGAATT 59.440 43.478 0.00 0.00 38.99 2.17
187 188 3.131396 CCGTCTTTTATGCGGCTAGAAT 58.869 45.455 0.00 0.00 38.99 2.40
188 189 2.546778 CCGTCTTTTATGCGGCTAGAA 58.453 47.619 0.00 0.00 38.99 2.10
189 190 2.218953 CCGTCTTTTATGCGGCTAGA 57.781 50.000 0.00 0.00 38.99 2.43
195 196 6.944557 TGATATGATACCGTCTTTTATGCG 57.055 37.500 0.00 0.00 0.00 4.73
196 197 8.709386 AGATGATATGATACCGTCTTTTATGC 57.291 34.615 0.00 0.00 0.00 3.14
224 225 1.671845 AGCCTTTTGCGTGTTCGTAAA 59.328 42.857 0.49 0.49 46.18 2.01
225 226 3.829754 GCCTTTTGCGTGTTCGTAA 57.170 47.368 0.00 0.00 39.59 3.18
237 238 1.803334 TATCGACACGCAAGCCTTTT 58.197 45.000 0.00 0.00 45.62 2.27
242 243 5.061064 CCTTCTAATATATCGACACGCAAGC 59.939 44.000 0.00 0.00 45.62 4.01
269 270 3.243267 GCACCACTGTGTATTCCGTTTTT 60.243 43.478 7.08 0.00 44.65 1.94
275 277 1.732259 CTTCGCACCACTGTGTATTCC 59.268 52.381 7.08 0.00 44.65 3.01
344 346 0.757188 ACTAGATGAGCTGGGTCCGG 60.757 60.000 0.00 0.00 0.00 5.14
345 347 1.982660 TACTAGATGAGCTGGGTCCG 58.017 55.000 0.00 0.00 0.00 4.79
346 348 3.501349 TGATACTAGATGAGCTGGGTCC 58.499 50.000 0.00 0.00 0.00 4.46
347 349 6.605194 TGATATGATACTAGATGAGCTGGGTC 59.395 42.308 0.00 0.00 0.00 4.46
348 350 6.497640 TGATATGATACTAGATGAGCTGGGT 58.502 40.000 0.00 0.00 0.00 4.51
349 351 6.606796 ACTGATATGATACTAGATGAGCTGGG 59.393 42.308 0.00 0.00 0.00 4.45
350 352 7.643569 ACTGATATGATACTAGATGAGCTGG 57.356 40.000 0.00 0.00 0.00 4.85
351 353 9.926158 AAAACTGATATGATACTAGATGAGCTG 57.074 33.333 0.00 0.00 0.00 4.24
379 381 9.542462 CCTTCTAATATATCAAGTGTTCGGAAA 57.458 33.333 0.00 0.00 0.00 3.13
380 382 8.148351 CCCTTCTAATATATCAAGTGTTCGGAA 58.852 37.037 0.00 0.00 0.00 4.30
381 383 7.256190 CCCCTTCTAATATATCAAGTGTTCGGA 60.256 40.741 0.00 0.00 0.00 4.55
382 384 6.874134 CCCCTTCTAATATATCAAGTGTTCGG 59.126 42.308 0.00 0.00 0.00 4.30
383 385 7.667557 TCCCCTTCTAATATATCAAGTGTTCG 58.332 38.462 0.00 0.00 0.00 3.95
384 386 9.847224 TTTCCCCTTCTAATATATCAAGTGTTC 57.153 33.333 0.00 0.00 0.00 3.18
386 388 9.853177 CTTTTCCCCTTCTAATATATCAAGTGT 57.147 33.333 0.00 0.00 0.00 3.55
387 389 8.787852 GCTTTTCCCCTTCTAATATATCAAGTG 58.212 37.037 0.00 0.00 0.00 3.16
388 390 7.661847 CGCTTTTCCCCTTCTAATATATCAAGT 59.338 37.037 0.00 0.00 0.00 3.16
389 391 7.878127 TCGCTTTTCCCCTTCTAATATATCAAG 59.122 37.037 0.00 0.00 0.00 3.02
390 392 7.741785 TCGCTTTTCCCCTTCTAATATATCAA 58.258 34.615 0.00 0.00 0.00 2.57
391 393 7.311092 TCGCTTTTCCCCTTCTAATATATCA 57.689 36.000 0.00 0.00 0.00 2.15
392 394 8.617290 TTTCGCTTTTCCCCTTCTAATATATC 57.383 34.615 0.00 0.00 0.00 1.63
394 396 9.498176 GTATTTCGCTTTTCCCCTTCTAATATA 57.502 33.333 0.00 0.00 0.00 0.86
395 397 7.996644 TGTATTTCGCTTTTCCCCTTCTAATAT 59.003 33.333 0.00 0.00 0.00 1.28
396 398 7.281549 GTGTATTTCGCTTTTCCCCTTCTAATA 59.718 37.037 0.00 0.00 0.00 0.98
397 399 6.095021 GTGTATTTCGCTTTTCCCCTTCTAAT 59.905 38.462 0.00 0.00 0.00 1.73
398 400 5.413523 GTGTATTTCGCTTTTCCCCTTCTAA 59.586 40.000 0.00 0.00 0.00 2.10
399 401 4.939439 GTGTATTTCGCTTTTCCCCTTCTA 59.061 41.667 0.00 0.00 0.00 2.10
400 402 3.756963 GTGTATTTCGCTTTTCCCCTTCT 59.243 43.478 0.00 0.00 0.00 2.85
401 403 3.504520 TGTGTATTTCGCTTTTCCCCTTC 59.495 43.478 0.00 0.00 0.00 3.46
402 404 3.492337 TGTGTATTTCGCTTTTCCCCTT 58.508 40.909 0.00 0.00 0.00 3.95
403 405 3.081804 CTGTGTATTTCGCTTTTCCCCT 58.918 45.455 0.00 0.00 0.00 4.79
404 406 2.817844 ACTGTGTATTTCGCTTTTCCCC 59.182 45.455 0.00 0.00 0.00 4.81
405 407 3.500680 TCACTGTGTATTTCGCTTTTCCC 59.499 43.478 7.79 0.00 0.00 3.97
406 408 4.742438 TCACTGTGTATTTCGCTTTTCC 57.258 40.909 7.79 0.00 0.00 3.13
407 409 5.565259 CACATCACTGTGTATTTCGCTTTTC 59.435 40.000 7.79 0.00 46.33 2.29
408 410 5.451908 CACATCACTGTGTATTTCGCTTTT 58.548 37.500 7.79 0.00 46.33 2.27
409 411 5.034554 CACATCACTGTGTATTTCGCTTT 57.965 39.130 7.79 0.00 46.33 3.51
410 412 4.668576 CACATCACTGTGTATTTCGCTT 57.331 40.909 7.79 0.00 46.33 4.68
421 423 0.588252 GCGCAACTTCACATCACTGT 59.412 50.000 0.30 0.00 35.44 3.55
422 424 0.451628 CGCGCAACTTCACATCACTG 60.452 55.000 8.75 0.00 0.00 3.66
423 425 1.862123 CGCGCAACTTCACATCACT 59.138 52.632 8.75 0.00 0.00 3.41
424 426 1.793613 GCGCGCAACTTCACATCAC 60.794 57.895 29.10 0.00 0.00 3.06
425 427 2.250237 TGCGCGCAACTTCACATCA 61.250 52.632 34.66 2.51 0.00 3.07
426 428 1.793613 GTGCGCGCAACTTCACATC 60.794 57.895 38.24 16.59 0.00 3.06
427 429 2.252260 GTGCGCGCAACTTCACAT 59.748 55.556 38.24 0.00 0.00 3.21
428 430 3.947841 GGTGCGCGCAACTTCACA 61.948 61.111 40.04 11.13 0.00 3.58
431 433 4.719616 GTCGGTGCGCGCAACTTC 62.720 66.667 42.04 30.62 0.00 3.01
433 435 3.925362 TATGTCGGTGCGCGCAACT 62.925 57.895 42.04 28.22 0.00 3.16
434 436 3.017656 TTATGTCGGTGCGCGCAAC 62.018 57.895 38.15 38.15 0.00 4.17
435 437 2.738904 TTATGTCGGTGCGCGCAA 60.739 55.556 38.24 21.42 0.00 4.85
436 438 2.545165 TAGTTATGTCGGTGCGCGCA 62.545 55.000 33.09 33.09 0.00 6.09
437 439 1.874915 TAGTTATGTCGGTGCGCGC 60.875 57.895 27.26 27.26 0.00 6.86
438 440 1.477030 GGTAGTTATGTCGGTGCGCG 61.477 60.000 0.00 0.00 0.00 6.86
439 441 1.149964 GGGTAGTTATGTCGGTGCGC 61.150 60.000 0.00 0.00 0.00 6.09
440 442 0.868602 CGGGTAGTTATGTCGGTGCG 60.869 60.000 0.00 0.00 0.00 5.34
441 443 0.174162 ACGGGTAGTTATGTCGGTGC 59.826 55.000 0.00 0.00 0.00 5.01
442 444 2.423185 TGTACGGGTAGTTATGTCGGTG 59.577 50.000 0.00 0.00 0.00 4.94
443 445 2.722094 TGTACGGGTAGTTATGTCGGT 58.278 47.619 0.00 0.00 0.00 4.69
444 446 3.438360 GTTGTACGGGTAGTTATGTCGG 58.562 50.000 0.00 0.00 0.00 4.79
445 447 3.100817 CGTTGTACGGGTAGTTATGTCG 58.899 50.000 0.00 0.00 38.08 4.35
519 521 3.005897 GGGAGACTTATGCAAGCGATCTA 59.994 47.826 0.00 0.00 34.94 1.98
532 534 4.387664 GGGAGACTTATGGAGGGAGACTTA 60.388 50.000 0.00 0.00 0.00 2.24
533 535 3.631346 GGGAGACTTATGGAGGGAGACTT 60.631 52.174 0.00 0.00 0.00 3.01
534 536 2.090999 GGGAGACTTATGGAGGGAGACT 60.091 54.545 0.00 0.00 0.00 3.24
535 537 2.090999 AGGGAGACTTATGGAGGGAGAC 60.091 54.545 0.00 0.00 0.00 3.36
536 538 2.178106 GAGGGAGACTTATGGAGGGAGA 59.822 54.545 0.00 0.00 0.00 3.71
537 539 2.604139 GAGGGAGACTTATGGAGGGAG 58.396 57.143 0.00 0.00 0.00 4.30
538 540 1.220750 GGAGGGAGACTTATGGAGGGA 59.779 57.143 0.00 0.00 0.00 4.20
539 541 1.062121 TGGAGGGAGACTTATGGAGGG 60.062 57.143 0.00 0.00 0.00 4.30
540 542 2.478872 TGGAGGGAGACTTATGGAGG 57.521 55.000 0.00 0.00 0.00 4.30
541 543 2.636893 CCATGGAGGGAGACTTATGGAG 59.363 54.545 5.56 0.00 42.36 3.86
593 595 0.623723 GACCTTCAATGGCACCCCTA 59.376 55.000 0.00 0.00 0.00 3.53
629 809 0.804989 CACGGTTTGGAAGATCTGGC 59.195 55.000 0.00 0.00 0.00 4.85
633 813 2.100605 AGCTCACGGTTTGGAAGATC 57.899 50.000 0.00 0.00 0.00 2.75
645 825 1.929836 GATTTGACAGCCTAGCTCACG 59.070 52.381 0.00 0.00 36.40 4.35
711 928 4.767255 GCCCACCTCACGCCAGAG 62.767 72.222 0.00 0.00 35.39 3.35
762 983 4.149598 ACAGATGATATGGTACTACCGCA 58.850 43.478 0.62 0.00 42.58 5.69
769 990 4.389992 CCATGCGAACAGATGATATGGTAC 59.610 45.833 0.00 0.00 31.33 3.34
770 991 4.563374 CCCATGCGAACAGATGATATGGTA 60.563 45.833 0.00 0.00 33.47 3.25
771 992 3.405831 CCATGCGAACAGATGATATGGT 58.594 45.455 0.00 0.00 31.33 3.55
772 993 2.745821 CCCATGCGAACAGATGATATGG 59.254 50.000 0.00 0.00 34.75 2.74
858 1079 1.225745 GTGCATGCAACGCGTAGTC 60.226 57.895 24.58 5.15 0.00 2.59
962 1197 3.256136 ACTCCGTCTGAACTCGAAAATCT 59.744 43.478 0.00 0.00 0.00 2.40
980 1222 2.402787 GACGACGGCGAGTACTCC 59.597 66.667 22.49 9.71 41.64 3.85
1027 1269 1.022451 GGTTTGGCGCATCGAGGTAA 61.022 55.000 10.83 0.00 0.00 2.85
1050 1292 2.483714 GGCCAGTGATCGATCTTTGCTA 60.484 50.000 25.02 1.75 0.00 3.49
1051 1293 1.661341 GCCAGTGATCGATCTTTGCT 58.339 50.000 25.02 14.69 0.00 3.91
1052 1294 0.659957 GGCCAGTGATCGATCTTTGC 59.340 55.000 25.02 19.95 0.00 3.68
1053 1295 2.028420 TGGCCAGTGATCGATCTTTG 57.972 50.000 25.02 20.69 0.00 2.77
1054 1296 3.209410 GAATGGCCAGTGATCGATCTTT 58.791 45.455 25.02 11.17 0.00 2.52
1081 1323 2.004733 CATCGAGCTCAACATGCTTCA 58.995 47.619 15.40 0.00 41.30 3.02
1090 1332 4.161295 CGGGGCCATCGAGCTCAA 62.161 66.667 15.40 0.00 33.67 3.02
1123 1365 1.399791 GACCAAGAGCATTGCTAGCAC 59.600 52.381 19.17 6.28 39.88 4.40
1251 1493 2.997897 GAGGACACCAGGACCGCT 60.998 66.667 0.00 0.00 0.00 5.52
1252 1494 4.083862 GGAGGACACCAGGACCGC 62.084 72.222 0.00 0.00 0.00 5.68
1347 1589 4.662961 CACACGACGGCAGCCTGA 62.663 66.667 10.54 0.00 0.00 3.86
1715 1957 2.711922 CCCTCGGCGTCTACAAGCT 61.712 63.158 6.85 0.00 0.00 3.74
1722 1964 4.144727 ATCCTCCCCTCGGCGTCT 62.145 66.667 6.85 0.00 0.00 4.18
1812 2054 3.112075 CGCCACGACAGCACGATT 61.112 61.111 5.12 0.00 37.03 3.34
1980 2222 4.118584 GCCTGGAATTTGGCCACT 57.881 55.556 3.88 0.00 43.11 4.00
2110 2352 2.202623 GCTGCCGAGGTAGACGTG 60.203 66.667 11.44 0.00 0.00 4.49
2137 2379 0.246635 CGGTTCAAGATGTCCTCCGT 59.753 55.000 0.00 0.00 33.20 4.69
2138 2380 0.460284 CCGGTTCAAGATGTCCTCCG 60.460 60.000 0.00 0.00 36.85 4.63
2220 2462 1.913762 CTCCTCCCACACGTCCCTT 60.914 63.158 0.00 0.00 0.00 3.95
2292 2537 2.203153 GCCATGTTCCCGCCGTAT 60.203 61.111 0.00 0.00 0.00 3.06
2370 2615 2.420129 GGCCGTCCAGAAGTTCATGTAT 60.420 50.000 5.50 0.00 0.00 2.29
2609 2863 2.100197 AGTCGTCGGGATCAATCTGAA 58.900 47.619 0.00 0.00 0.00 3.02
2616 2870 2.014857 CTGAAGTAGTCGTCGGGATCA 58.985 52.381 0.00 0.00 0.00 2.92
2673 2927 1.244816 TCCTCGTGATCAGTCGTTGT 58.755 50.000 0.00 0.00 0.00 3.32
2678 2932 2.544685 CCACATTCCTCGTGATCAGTC 58.455 52.381 0.00 0.00 36.43 3.51
2687 2941 1.592669 CTAGGCGCCACATTCCTCG 60.593 63.158 31.54 0.00 0.00 4.63
2692 2946 1.276140 TAACCCCTAGGCGCCACATT 61.276 55.000 31.54 15.60 36.11 2.71
2705 2959 4.003648 CGAAATAGGATCAGCATAACCCC 58.996 47.826 0.00 0.00 0.00 4.95
2712 2966 5.492895 TGGTTTAACGAAATAGGATCAGCA 58.507 37.500 0.00 0.00 0.00 4.41
2733 2987 7.978975 CCCACACTACCAAATATGTAAAAATGG 59.021 37.037 0.00 0.00 0.00 3.16
2752 3006 2.972713 ACACAAGACAGATACCCACACT 59.027 45.455 0.00 0.00 0.00 3.55
2791 3048 8.124199 TCATCCGCTAAATTACGATTTTAAACC 58.876 33.333 0.00 0.00 36.82 3.27
2804 3061 4.759693 TGTTTGTCTGTCATCCGCTAAATT 59.240 37.500 0.00 0.00 0.00 1.82
2809 3066 1.344438 TCTGTTTGTCTGTCATCCGCT 59.656 47.619 0.00 0.00 0.00 5.52
2820 3077 6.785488 TCGGATGCATATATTCTGTTTGTC 57.215 37.500 0.00 0.00 0.00 3.18
2821 3078 7.750229 AATCGGATGCATATATTCTGTTTGT 57.250 32.000 0.00 0.00 0.00 2.83
2852 3109 7.068103 ACATGACACCAAAATGAAAACACTAGA 59.932 33.333 0.00 0.00 0.00 2.43
2854 3111 7.106439 ACATGACACCAAAATGAAAACACTA 57.894 32.000 0.00 0.00 0.00 2.74
2858 3116 8.327429 CAAACTACATGACACCAAAATGAAAAC 58.673 33.333 0.00 0.00 0.00 2.43
2906 3177 9.444600 ACGGATTTTAAACTGATGTAGTATGTT 57.555 29.630 0.00 0.00 39.18 2.71
2914 3185 5.334879 GCAGACACGGATTTTAAACTGATGT 60.335 40.000 0.00 0.00 0.00 3.06
2916 3187 5.003804 AGCAGACACGGATTTTAAACTGAT 58.996 37.500 0.00 0.00 0.00 2.90
2919 3190 8.556213 TTATTAGCAGACACGGATTTTAAACT 57.444 30.769 0.00 0.00 0.00 2.66
2961 3321 1.956636 GCTCTGCAATGAATGGACCCA 60.957 52.381 0.00 0.00 0.00 4.51
2962 3322 0.743097 GCTCTGCAATGAATGGACCC 59.257 55.000 0.00 0.00 0.00 4.46
2963 3323 1.133790 GTGCTCTGCAATGAATGGACC 59.866 52.381 0.00 0.00 41.47 4.46
2985 3355 0.738762 CCGCAGTGTCCATGTCTGAG 60.739 60.000 8.07 5.42 0.00 3.35
2986 3356 1.293179 CCGCAGTGTCCATGTCTGA 59.707 57.895 8.07 0.00 0.00 3.27
2990 3878 2.359107 CAGCCGCAGTGTCCATGT 60.359 61.111 0.00 0.00 0.00 3.21
2998 3886 4.873129 CGATACGCCAGCCGCAGT 62.873 66.667 0.00 0.00 41.76 4.40
3010 3898 4.977126 CCTCGCCGCCGACGATAC 62.977 72.222 0.00 0.00 43.93 2.24
3030 3918 0.745845 CTCCGGCTTGTTCCCTGATG 60.746 60.000 0.00 0.00 0.00 3.07
3032 3920 2.592993 CCTCCGGCTTGTTCCCTGA 61.593 63.158 0.00 0.00 0.00 3.86
3034 3922 2.203938 TCCTCCGGCTTGTTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
3036 3924 2.434359 CGTCCTCCGGCTTGTTCC 60.434 66.667 0.00 0.00 0.00 3.62
3045 3933 4.194720 CCTCGGCTTCGTCCTCCG 62.195 72.222 0.00 0.00 44.16 4.63
3059 3955 6.581171 AAAAGATGATTTTCAGTCACCCTC 57.419 37.500 0.00 0.00 0.00 4.30
3092 3988 5.360591 CCGCCTAATCTTCAGTTAATCAGT 58.639 41.667 0.00 0.00 0.00 3.41
3093 3989 4.752101 CCCGCCTAATCTTCAGTTAATCAG 59.248 45.833 0.00 0.00 0.00 2.90
3094 3990 4.703897 CCCGCCTAATCTTCAGTTAATCA 58.296 43.478 0.00 0.00 0.00 2.57
3095 3991 3.498777 GCCCGCCTAATCTTCAGTTAATC 59.501 47.826 0.00 0.00 0.00 1.75
3151 4053 9.169468 GTGTTCTTTGTTTATATGTGACAACAG 57.831 33.333 0.00 0.00 40.39 3.16
3163 4065 7.721399 ACCATTCTCAGAGTGTTCTTTGTTTAT 59.279 33.333 0.00 0.00 0.00 1.40
3168 4070 6.382869 AAACCATTCTCAGAGTGTTCTTTG 57.617 37.500 0.00 0.00 0.00 2.77
3192 4094 3.609853 TCAGTCCATTTCTGAAATCGGG 58.390 45.455 21.04 16.80 38.71 5.14
3213 4115 3.327757 TCTGGCTCCATCTTTACACACTT 59.672 43.478 0.00 0.00 0.00 3.16
3237 4139 1.064463 TGATGCTTAAAGCCTCCTGGG 60.064 52.381 0.00 0.00 41.51 4.45
3238 4140 2.295885 CTGATGCTTAAAGCCTCCTGG 58.704 52.381 0.00 0.00 41.51 4.45
3239 4141 1.674962 GCTGATGCTTAAAGCCTCCTG 59.325 52.381 0.00 0.00 41.51 3.86
3240 4142 1.283029 TGCTGATGCTTAAAGCCTCCT 59.717 47.619 0.00 0.00 41.51 3.69
3241 4143 1.674962 CTGCTGATGCTTAAAGCCTCC 59.325 52.381 0.00 0.00 41.51 4.30
3242 4144 2.636830 TCTGCTGATGCTTAAAGCCTC 58.363 47.619 0.00 0.00 41.51 4.70
3258 4160 3.367395 CCGATCCCCTTTTCTTTTTCTGC 60.367 47.826 0.00 0.00 0.00 4.26
3311 4213 8.816640 ATGCAAAATATAAAACCGATCATTCC 57.183 30.769 0.00 0.00 0.00 3.01
3313 4215 8.550376 GCAATGCAAAATATAAAACCGATCATT 58.450 29.630 0.00 0.00 0.00 2.57
3314 4216 7.171337 GGCAATGCAAAATATAAAACCGATCAT 59.829 33.333 7.79 0.00 0.00 2.45
3341 4266 4.116238 GAGAACACGGAGATGATCTTTCC 58.884 47.826 0.00 0.00 32.35 3.13
3342 4267 5.004922 AGAGAACACGGAGATGATCTTTC 57.995 43.478 0.00 0.00 32.35 2.62
3343 4268 4.464244 TGAGAGAACACGGAGATGATCTTT 59.536 41.667 0.00 0.00 32.35 2.52
3344 4269 4.019858 TGAGAGAACACGGAGATGATCTT 58.980 43.478 0.00 0.00 32.35 2.40
3345 4270 3.625853 TGAGAGAACACGGAGATGATCT 58.374 45.455 0.00 0.00 34.68 2.75
3346 4271 4.377839 TTGAGAGAACACGGAGATGATC 57.622 45.455 0.00 0.00 0.00 2.92
3347 4272 4.808414 TTTGAGAGAACACGGAGATGAT 57.192 40.909 0.00 0.00 0.00 2.45
3348 4273 4.600692 TTTTGAGAGAACACGGAGATGA 57.399 40.909 0.00 0.00 0.00 2.92
3349 4274 6.036517 CCTTATTTTGAGAGAACACGGAGATG 59.963 42.308 0.00 0.00 0.00 2.90
3350 4275 6.070767 TCCTTATTTTGAGAGAACACGGAGAT 60.071 38.462 0.00 0.00 0.00 2.75
3351 4276 5.245301 TCCTTATTTTGAGAGAACACGGAGA 59.755 40.000 0.00 0.00 0.00 3.71
3352 4277 5.479306 TCCTTATTTTGAGAGAACACGGAG 58.521 41.667 0.00 0.00 0.00 4.63
3353 4278 5.477607 TCCTTATTTTGAGAGAACACGGA 57.522 39.130 0.00 0.00 0.00 4.69
3405 4346 5.878116 AGCCGTAATTACAAAATAGCTCACA 59.122 36.000 15.67 0.00 0.00 3.58
3414 4355 5.637006 AAGCATGAGCCGTAATTACAAAA 57.363 34.783 15.67 0.00 43.56 2.44
3427 4368 0.895100 TGTCCCACCAAAGCATGAGC 60.895 55.000 0.00 0.00 42.56 4.26
3514 4455 7.720074 AGGAGTTCTTTGGGAGTACTTTTAAAG 59.280 37.037 15.14 15.14 36.29 1.85
3585 4557 8.531530 GGTTATTTATGTTATGCGCAAAGAAAG 58.468 33.333 17.11 0.00 0.00 2.62
3689 4667 7.907389 TCTTGTCAGACTTTGAACCTACATAT 58.093 34.615 1.31 0.00 37.61 1.78
3710 4688 1.329906 GCCTCACTCGAATGCATCTTG 59.670 52.381 0.00 0.00 0.00 3.02
3712 4690 0.529337 CGCCTCACTCGAATGCATCT 60.529 55.000 0.00 0.00 0.00 2.90
3714 4692 1.086067 CACGCCTCACTCGAATGCAT 61.086 55.000 0.00 0.00 0.00 3.96
3732 4710 0.036164 AAAGACCATAGTGTGCGGCA 59.964 50.000 0.00 0.00 0.00 5.69
3750 4728 4.064388 GCCTTTTGCTTATCTGCCAAAAA 58.936 39.130 0.00 0.00 36.87 1.94
3752 4730 3.317603 GCCTTTTGCTTATCTGCCAAA 57.682 42.857 0.00 0.00 36.87 3.28
3794 4773 7.350467 CCCACGTACTTTTTCTAAACTCTTTC 58.650 38.462 0.00 0.00 0.00 2.62
3795 4774 6.238566 GCCCACGTACTTTTTCTAAACTCTTT 60.239 38.462 0.00 0.00 0.00 2.52
3796 4775 5.237996 GCCCACGTACTTTTTCTAAACTCTT 59.762 40.000 0.00 0.00 0.00 2.85
3797 4776 4.753610 GCCCACGTACTTTTTCTAAACTCT 59.246 41.667 0.00 0.00 0.00 3.24
3798 4777 4.512571 TGCCCACGTACTTTTTCTAAACTC 59.487 41.667 0.00 0.00 0.00 3.01
3799 4778 4.453751 TGCCCACGTACTTTTTCTAAACT 58.546 39.130 0.00 0.00 0.00 2.66
3800 4779 4.816786 TGCCCACGTACTTTTTCTAAAC 57.183 40.909 0.00 0.00 0.00 2.01
3801 4780 4.276431 CCTTGCCCACGTACTTTTTCTAAA 59.724 41.667 0.00 0.00 0.00 1.85
3802 4781 3.816523 CCTTGCCCACGTACTTTTTCTAA 59.183 43.478 0.00 0.00 0.00 2.10
3803 4782 3.404899 CCTTGCCCACGTACTTTTTCTA 58.595 45.455 0.00 0.00 0.00 2.10
3804 4783 2.227194 CCTTGCCCACGTACTTTTTCT 58.773 47.619 0.00 0.00 0.00 2.52
3805 4784 1.268625 CCCTTGCCCACGTACTTTTTC 59.731 52.381 0.00 0.00 0.00 2.29
3806 4785 1.324383 CCCTTGCCCACGTACTTTTT 58.676 50.000 0.00 0.00 0.00 1.94
3807 4786 0.538746 CCCCTTGCCCACGTACTTTT 60.539 55.000 0.00 0.00 0.00 2.27
3808 4787 1.074248 CCCCTTGCCCACGTACTTT 59.926 57.895 0.00 0.00 0.00 2.66
3809 4788 2.754375 CCCCTTGCCCACGTACTT 59.246 61.111 0.00 0.00 0.00 2.24
3810 4789 3.327404 CCCCCTTGCCCACGTACT 61.327 66.667 0.00 0.00 0.00 2.73
3811 4790 3.324108 TCCCCCTTGCCCACGTAC 61.324 66.667 0.00 0.00 0.00 3.67
3812 4791 3.006728 CTCCCCCTTGCCCACGTA 61.007 66.667 0.00 0.00 0.00 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.