AutoCloner

Multiple sequence alignment - TraesCS2B01G145100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G145100	chr2B	100.000	3018	0	0	1	3018	111042786	111039769	0.000000e+00	5574
1	TraesCS2B01G145100	chr2B	98.496	931	14	0	1	931	111051876	111050946	0.000000e+00	1642
2	TraesCS2B01G145100	chr2B	97.530	931	21	2	1	931	417313977	417314905	0.000000e+00	1591
3	TraesCS2B01G145100	chr2B	95.591	930	39	2	1	929	704251810	704250882	0.000000e+00	1489
4	TraesCS2B01G145100	chr2B	85.767	808	105	8	1207	2009	111035652	111034850	0.000000e+00	846
5	TraesCS2B01G145100	chr2B	86.447	760	97	5	1260	2016	111060473	111059717	0.000000e+00	828
6	TraesCS2B01G145100	chr2B	81.250	560	93	9	1212	1762	110417357	110416801	2.760000e-120	442
7	TraesCS2B01G145100	chr2D	91.109	2047	137	22	930	2971	73311988	73313994	0.000000e+00	2730
8	TraesCS2B01G145100	chr2D	87.407	810	96	5	1212	2018	73288619	73289425	0.000000e+00	926
9	TraesCS2B01G145100	chr2D	87.065	804	102	2	1207	2009	73316899	73317701	0.000000e+00	907
10	TraesCS2B01G145100	chr2D	78.200	789	151	19	1212	1991	136438357	136437581	4.520000e-133	484
11	TraesCS2B01G145100	chr2A	94.312	1090	54	5	930	2019	72736374	72735293	0.000000e+00	1663
12	TraesCS2B01G145100	chr2A	87.763	809	95	3	1212	2018	72741396	72740590	0.000000e+00	942
13	TraesCS2B01G145100	chr2A	85.626	807	108	8	1207	2009	72697323	72696521	0.000000e+00	841
14	TraesCS2B01G145100	chr2A	87.483	735	63	12	2089	2813	72734924	72734209	0.000000e+00	821
15	TraesCS2B01G145100	chr2A	88.298	376	38	3	2595	2969	72708372	72708002	2.130000e-121	446
16	TraesCS2B01G145100	chr2A	93.939	99	6	0	2873	2971	72734210	72734112	1.870000e-32	150
17	TraesCS2B01G145100	chr1B	97.744	931	21	0	1	931	375686454	375685524	0.000000e+00	1604
18	TraesCS2B01G145100	chr4B	97.422	931	24	0	1	931	266852116	266851186	0.000000e+00	1587
19	TraesCS2B01G145100	chr4B	97.318	932	24	1	1	931	33036294	33037225	0.000000e+00	1581
20	TraesCS2B01G145100	chr4B	96.459	932	29	3	1	931	33034320	33035248	0.000000e+00	1535
21	TraesCS2B01G145100	chr4B	95.494	932	41	1	1	931	283059452	283058521	0.000000e+00	1487
22	TraesCS2B01G145100	chr6B	95.503	934	37	5	1	931	559454458	559453527	0.000000e+00	1487
23	TraesCS2B01G145100	chr7A	76.570	828	150	37	1212	2005	69568450	69569267	6.020000e-112	414
24	TraesCS2B01G145100	chr7B	76.377	817	153	31	1212	1996	7038191	7037383	1.300000e-108	403

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G145100	chr2B	111039769	111042786	3017	True	5574.0	5574	100.000000	1	3018	1	chr2B.!!$R3	3017
1	TraesCS2B01G145100	chr2B	111050946	111051876	930	True	1642.0	1642	98.496000	1	931	1	chr2B.!!$R4	930
2	TraesCS2B01G145100	chr2B	417313977	417314905	928	False	1591.0	1591	97.530000	1	931	1	chr2B.!!$F1	930
3	TraesCS2B01G145100	chr2B	704250882	704251810	928	True	1489.0	1489	95.591000	1	929	1	chr2B.!!$R6	928
4	TraesCS2B01G145100	chr2B	111034850	111035652	802	True	846.0	846	85.767000	1207	2009	1	chr2B.!!$R2	802
5	TraesCS2B01G145100	chr2B	111059717	111060473	756	True	828.0	828	86.447000	1260	2016	1	chr2B.!!$R5	756
6	TraesCS2B01G145100	chr2B	110416801	110417357	556	True	442.0	442	81.250000	1212	1762	1	chr2B.!!$R1	550
7	TraesCS2B01G145100	chr2D	73311988	73317701	5713	False	1818.5	2730	89.087000	930	2971	2	chr2D.!!$F2	2041
8	TraesCS2B01G145100	chr2D	73288619	73289425	806	False	926.0	926	87.407000	1212	2018	1	chr2D.!!$F1	806
9	TraesCS2B01G145100	chr2D	136437581	136438357	776	True	484.0	484	78.200000	1212	1991	1	chr2D.!!$R1	779
10	TraesCS2B01G145100	chr2A	72740590	72741396	806	True	942.0	942	87.763000	1212	2018	1	chr2A.!!$R3	806
11	TraesCS2B01G145100	chr2A	72734112	72736374	2262	True	878.0	1663	91.911333	930	2971	3	chr2A.!!$R4	2041
12	TraesCS2B01G145100	chr2A	72696521	72697323	802	True	841.0	841	85.626000	1207	2009	1	chr2A.!!$R1	802
13	TraesCS2B01G145100	chr1B	375685524	375686454	930	True	1604.0	1604	97.744000	1	931	1	chr1B.!!$R1	930
14	TraesCS2B01G145100	chr4B	266851186	266852116	930	True	1587.0	1587	97.422000	1	931	1	chr4B.!!$R1	930
15	TraesCS2B01G145100	chr4B	33034320	33037225	2905	False	1558.0	1581	96.888500	1	931	2	chr4B.!!$F1	930
16	TraesCS2B01G145100	chr4B	283058521	283059452	931	True	1487.0	1487	95.494000	1	931	1	chr4B.!!$R2	930
17	TraesCS2B01G145100	chr6B	559453527	559454458	931	True	1487.0	1487	95.503000	1	931	1	chr6B.!!$R1	930
18	TraesCS2B01G145100	chr7A	69568450	69569267	817	False	414.0	414	76.570000	1212	2005	1	chr7A.!!$F1	793
19	TraesCS2B01G145100	chr7B	7037383	7038191	808	True	403.0	403	76.377000	1212	1996	1	chr7B.!!$R1	784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
993	2975	0.251354	GATCAAGCAGCACCAGAGGA	59.749	55.0	0.0	0.0	0.0	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2973	5285	0.322546	GGGGGACACTGGACACAATC	60.323	60.0	0.0	0.0	0.0	2.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
530	2512	7.307396	CGTTGACAGAGTTCATGTTAGAAATGT	60.307	37.037	0.00	0.00	0.00	2.71
780	2762	3.769844	CTGGAAGGTCCTGCTAGTCTTTA	59.230	47.826	1.80	0.00	37.46	1.85
845	2827	4.934797	ACTTGGAGGGATTTCATTGAGA	57.065	40.909	0.00	0.00	0.00	3.27
934	2916	1.765314	CAGGGTAAGATGGCTGTAGCT	59.235	52.381	3.63	0.00	41.70	3.32
990	2972	0.671472	CACGATCAAGCAGCACCAGA	60.671	55.000	0.00	0.00	0.00	3.86
993	2975	0.251354	GATCAAGCAGCACCAGAGGA	59.749	55.000	0.00	0.00	0.00	3.71
996	2978	3.265272	AAGCAGCACCAGAGGAGGC	62.265	63.158	0.00	0.00	0.00	4.70
1012	2994	2.109126	GGCAGGATGTTCCGAGCAC	61.109	63.158	13.42	3.14	42.75	4.40
1078	3060	2.281070	CAGTGCCAGCCTTGTCGT	60.281	61.111	0.00	0.00	0.00	4.34
1146	3128	2.052690	CCCTCCCGTCACACTCGAT	61.053	63.158	0.00	0.00	0.00	3.59
1172	3154	1.068127	CTTGCCTTGTGCTTGCTTTCT	59.932	47.619	0.00	0.00	42.00	2.52
1307	3289	4.657824	ACGGTGCCAAGGTCGTCG	62.658	66.667	0.00	0.00	0.00	5.12
1513	3495	2.776913	CGTCCCTCTCGGCTTCCTC	61.777	68.421	0.00	0.00	0.00	3.71
1522	3504	4.516195	GGCTTCCTCGACCTCGCC	62.516	72.222	0.00	0.00	39.60	5.54
1948	3930	2.674084	GGCCAAGTACGTGAACGGC	61.674	63.158	10.61	11.21	44.95	5.68
1960	3942	1.890510	GAACGGCCACAACCTCGTT	60.891	57.895	2.24	0.00	46.45	3.85
2027	4321	0.100682	GGCGCAGTAAGAGTCGATCA	59.899	55.000	10.83	0.00	0.00	2.92
2035	4329	1.994507	AAGAGTCGATCAGCGGACGG	61.995	60.000	8.39	0.00	41.33	4.79
2068	4362	9.503427	GTCTATTAATTCGGGAGTTCAAAAATG	57.497	33.333	0.00	0.00	0.00	2.32
2081	4375	6.262601	AGTTCAAAAATGAAGTTACGGTGTG	58.737	36.000	0.00	0.00	0.00	3.82
2116	4410	4.391140	ACAATCGAGCGTTTTTCTCTTC	57.609	40.909	0.00	0.00	0.00	2.87
2128	4422	6.188175	CGTTTTTCTCTTCAGAAGTGAACTG	58.812	40.000	21.94	11.50	39.90	3.16
2129	4423	6.490534	GTTTTTCTCTTCAGAAGTGAACTGG	58.509	40.000	21.94	2.90	39.90	4.00
2130	4424	4.342862	TTCTCTTCAGAAGTGAACTGGG	57.657	45.455	19.39	0.00	37.79	4.45
2161	4455	4.911390	TCTTCCTCAAGAAATGAACTCCC	58.089	43.478	0.00	0.00	37.67	4.30
2175	4472	0.916358	ACTCCCATCTTCCACCAGGG	60.916	60.000	0.00	0.00	40.98	4.45
2187	4484	1.843376	ACCAGGGTCCCTCACACAG	60.843	63.158	7.76	0.00	0.00	3.66
2188	4485	1.536418	CCAGGGTCCCTCACACAGA	60.536	63.158	7.76	0.00	0.00	3.41
2189	4486	1.674057	CAGGGTCCCTCACACAGAC	59.326	63.158	7.76	0.00	0.00	3.51
2190	4487	1.908793	AGGGTCCCTCACACAGACG	60.909	63.158	3.85	0.00	0.00	4.18
2193	4490	1.183549	GGTCCCTCACACAGACGTAT	58.816	55.000	0.00	0.00	0.00	3.06
2213	4514	9.900710	GACGTATATGTCTGAACTCTGAATTAT	57.099	33.333	16.42	0.00	35.95	1.28
2250	4551	3.799366	TCTTCTTTCCGTGTTGCTTGTA	58.201	40.909	0.00	0.00	0.00	2.41
2271	4572	9.553064	CTTGTATCTGTAGGAGCTTGATATTTT	57.447	33.333	0.00	0.00	0.00	1.82
2329	4631	6.041296	GGGTTCTACCACTCGATTAAGGAATA	59.959	42.308	0.00	0.00	41.02	1.75
2383	4685	5.964958	TCAGAATGGATGTTCAAGTTTCC	57.035	39.130	0.00	0.00	36.16	3.13
2395	4697	3.674997	TCAAGTTTCCGATGCTTAGCTT	58.325	40.909	5.60	0.00	0.00	3.74
2396	4698	3.684788	TCAAGTTTCCGATGCTTAGCTTC	59.315	43.478	5.60	7.94	0.00	3.86
2397	4699	3.618690	AGTTTCCGATGCTTAGCTTCT	57.381	42.857	16.22	0.00	31.76	2.85
2398	4700	4.737855	AGTTTCCGATGCTTAGCTTCTA	57.262	40.909	16.22	3.84	31.76	2.10
2399	4701	4.434520	AGTTTCCGATGCTTAGCTTCTAC	58.565	43.478	16.22	9.69	31.76	2.59
2400	4702	4.081642	AGTTTCCGATGCTTAGCTTCTACA	60.082	41.667	16.22	0.00	31.76	2.74
2401	4703	3.717400	TCCGATGCTTAGCTTCTACAG	57.283	47.619	16.22	2.97	31.76	2.74
2483	4785	3.181540	CGATTGTATATGTACGCTGCTGC	60.182	47.826	5.34	5.34	33.36	5.25
2534	4839	0.612174	GGAAGCAAGAGGGGGTTTCC	60.612	60.000	0.00	0.00	37.26	3.13
2548	4853	2.026262	GGGTTTCCAGACATAGAGCCAA	60.026	50.000	0.00	0.00	0.00	4.52
2569	4874	4.323569	AGAGGAGTCAGGATGTAAGTCA	57.676	45.455	0.00	0.00	37.40	3.41
2662	4974	1.410153	AGTTTACGTCGTGAGGTTGGT	59.590	47.619	8.47	0.00	0.00	3.67
2680	4992	0.575390	GTCAAACCAGACGTGACGTG	59.425	55.000	18.09	3.42	41.37	4.49
2692	5004	1.870580	CGTGACGTGCCTGTCCTAAAA	60.871	52.381	0.00	0.00	38.11	1.52
2694	5006	2.812011	GTGACGTGCCTGTCCTAAAAAT	59.188	45.455	0.00	0.00	38.11	1.82
2703	5015	4.816925	GCCTGTCCTAAAAATAGCGAGAAT	59.183	41.667	0.00	0.00	0.00	2.40
2707	5019	7.065803	CCTGTCCTAAAAATAGCGAGAATTTGA	59.934	37.037	0.00	0.00	0.00	2.69
2717	5029	9.817809	AAATAGCGAGAATTTGACTAGATTGTA	57.182	29.630	0.00	0.00	0.00	2.41
2739	5051	1.069227	GCCTCAAAGTTAACAGCACGG	60.069	52.381	8.61	3.85	0.00	4.94
2756	5068	3.182372	GCACGGCTCTCAAAAACAAAATC	59.818	43.478	0.00	0.00	0.00	2.17
2763	5075	5.232838	GCTCTCAAAAACAAAATCACACTGG	59.767	40.000	0.00	0.00	0.00	4.00
2799	5111	7.201617	GCTTTAAACTTTATCTCACTATGCCGT	60.202	37.037	0.00	0.00	0.00	5.68
2813	5125	3.926058	ATGCCGTCCACTAACCTAAAT	57.074	42.857	0.00	0.00	0.00	1.40
2853	5165	7.323656	GTCCACTTAAACACATTGAAATTCTCG	59.676	37.037	0.00	0.00	0.00	4.04
2854	5166	7.227711	TCCACTTAAACACATTGAAATTCTCGA	59.772	33.333	0.00	0.00	0.00	4.04
2883	5195	2.588620	AGTAAATGGAAACGTGGCCAA	58.411	42.857	7.24	0.00	37.78	4.52
2929	5241	1.080839	CCGGCACAAACAAATCCCG	60.081	57.895	0.00	0.00	35.74	5.14
2934	5246	1.399727	GCACAAACAAATCCCGTCTCG	60.400	52.381	0.00	0.00	0.00	4.04
2971	5283	3.787001	GCCCTAGGCCTCGCAACT	61.787	66.667	9.68	0.00	44.06	3.16
2972	5284	2.432300	GCCCTAGGCCTCGCAACTA	61.432	63.158	9.68	0.00	44.06	2.24
2973	5285	1.742768	CCCTAGGCCTCGCAACTAG	59.257	63.158	9.68	0.00	35.19	2.57
2974	5286	0.755698	CCCTAGGCCTCGCAACTAGA	60.756	60.000	9.68	0.00	37.06	2.43
2975	5287	1.333177	CCTAGGCCTCGCAACTAGAT	58.667	55.000	9.68	0.00	37.06	1.98
2977	5289	2.546795	CCTAGGCCTCGCAACTAGATTG	60.547	54.545	9.68	0.00	41.69	2.67
2980	5292	1.676014	GGCCTCGCAACTAGATTGTGT	60.676	52.381	14.22	0.00	46.93	3.72
2983	5322	2.353704	CCTCGCAACTAGATTGTGTCCA	60.354	50.000	14.22	1.15	46.93	4.02
2993	5332	1.065410	ATTGTGTCCAGTGTCCCCCA	61.065	55.000	0.00	0.00	0.00	4.96
2994	5333	1.282653	TTGTGTCCAGTGTCCCCCAA	61.283	55.000	0.00	0.00	0.00	4.12
2995	5334	1.228154	GTGTCCAGTGTCCCCCAAC	60.228	63.158	0.00	0.00	0.00	3.77
2997	5336	2.122769	TCCAGTGTCCCCCAACGA	60.123	61.111	0.00	0.00	0.00	3.85
3002	5341	2.203182	TGTCCCCCAACGAGGTCT	59.797	61.111	0.00	0.00	34.66	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
530	2512	2.515854	AGACTCACGCTTGTTCCTCTA	58.484	47.619	0.00	0.00	0.00	2.43
780	2762	1.577736	AGCCTCATAGTTCTGCCACT	58.422	50.000	0.00	0.00	0.00	4.00
845	2827	1.442769	ATGTGATGCTCGCGAAAAGT	58.557	45.000	11.33	0.00	0.00	2.66
891	2873	5.588648	TGGGTGAAACTACAGAACTCTTTTG	59.411	40.000	0.00	0.00	36.74	2.44
893	2875	5.367945	TGGGTGAAACTACAGAACTCTTT	57.632	39.130	0.00	0.00	36.74	2.52
934	2916	1.377987	GCGTGTGGCTTGGGGATAA	60.378	57.895	0.00	0.00	39.11	1.75
990	2972	1.306141	TCGGAACATCCTGCCTCCT	60.306	57.895	0.00	0.00	33.30	3.69
993	2975	2.293318	TGCTCGGAACATCCTGCCT	61.293	57.895	8.17	0.00	34.36	4.75
996	2978	0.247460	TCAGTGCTCGGAACATCCTG	59.753	55.000	0.00	0.00	33.30	3.86
1012	2994	0.729478	ACGACGACGACATGCTTCAG	60.729	55.000	15.32	0.00	42.66	3.02
1064	3046	2.731691	GAAGGACGACAAGGCTGGCA	62.732	60.000	3.38	0.00	0.00	4.92
1078	3060	2.214181	GAGAAGTGGCTCGCGAAGGA	62.214	60.000	11.33	0.00	0.00	3.36
1172	3154	2.100418	CCTCTGTGATTCATGAGCTCGA	59.900	50.000	9.64	0.00	0.00	4.04
1307	3289	4.773117	GTCCTGGACGTCGGCGAC	62.773	72.222	29.06	29.06	42.00	5.19
1446	3428	1.067974	TGTTGAACATGACGTCGAGGT	59.932	47.619	11.12	11.12	0.00	3.85
1506	3488	4.856607	CGGCGAGGTCGAGGAAGC	62.857	72.222	0.00	0.00	43.02	3.86
1509	3491	3.914579	AAGTCGGCGAGGTCGAGGA	62.915	63.158	11.20	0.00	41.35	3.71
1513	3495	3.796443	TCGAAGTCGGCGAGGTCG	61.796	66.667	27.10	27.10	40.29	4.79
1522	3504	2.202440	ATGACGCGGTCGAAGTCG	60.202	61.111	12.47	0.00	37.69	4.18
1603	3585	1.227468	GATGATGCTGCCTCTGCGA	60.227	57.895	6.49	0.00	41.78	5.10
1924	3906	1.445582	CACGTACTTGGCCTCGTCC	60.446	63.158	3.32	0.00	34.30	4.79
1960	3942	4.041917	GTGTACCCGCCGTCGACA	62.042	66.667	17.16	0.00	38.10	4.35
2005	3987	2.572284	GACTCTTACTGCGCCGGT	59.428	61.111	4.18	6.65	0.00	5.28
2027	4321	2.803155	TAGACCGTGTACCGTCCGCT	62.803	60.000	0.00	0.00	33.66	5.52
2035	4329	5.186996	TCCCGAATTAATAGACCGTGTAC	57.813	43.478	0.00	0.00	0.00	2.90
2068	4362	1.333791	GCAGCAACACACCGTAACTTC	60.334	52.381	0.00	0.00	0.00	3.01
2081	4375	1.664016	CGATTGTTCAGGTGCAGCAAC	60.664	52.381	19.63	14.76	0.00	4.17
2116	4410	3.475566	TGTTCTCCCAGTTCACTTCTG	57.524	47.619	0.00	0.00	0.00	3.02
2128	4422	4.911390	TCTTGAGGAAGAATTGTTCTCCC	58.089	43.478	14.34	0.00	39.61	4.30
2129	4423	6.884280	TTTCTTGAGGAAGAATTGTTCTCC	57.116	37.500	14.34	7.65	45.60	3.71
2130	4424	8.103948	TCATTTCTTGAGGAAGAATTGTTCTC	57.896	34.615	14.34	10.38	45.60	2.87
2161	4455	0.916358	AGGGACCCTGGTGGAAGATG	60.916	60.000	13.95	0.00	38.00	2.90
2175	4472	3.380637	ACATATACGTCTGTGTGAGGGAC	59.619	47.826	2.53	0.00	35.08	4.46
2187	4484	9.900710	ATAATTCAGAGTTCAGACATATACGTC	57.099	33.333	0.00	0.00	36.08	4.34
2193	4490	9.121658	ACGACTATAATTCAGAGTTCAGACATA	57.878	33.333	0.00	0.00	0.00	2.29
2213	4514	8.127327	CGGAAAGAAGAATAACATCTACGACTA	58.873	37.037	0.00	0.00	0.00	2.59
2271	4572	3.301274	ACCATCCCGTCAAAAGGAAAAA	58.699	40.909	0.00	0.00	35.30	1.94
2276	4577	1.557832	TCCTACCATCCCGTCAAAAGG	59.442	52.381	0.00	0.00	0.00	3.11
2329	4631	3.897239	TGAAGCCGGATAATCAAACCAT	58.103	40.909	5.05	0.00	0.00	3.55
2368	4670	2.749621	AGCATCGGAAACTTGAACATCC	59.250	45.455	0.00	0.00	0.00	3.51
2395	4697	3.007290	ACAGTTCTCATTGCTGCTGTAGA	59.993	43.478	0.00	0.00	35.71	2.59
2396	4698	3.332919	ACAGTTCTCATTGCTGCTGTAG	58.667	45.455	0.00	0.00	35.71	2.74
2397	4699	3.007290	AGACAGTTCTCATTGCTGCTGTA	59.993	43.478	0.00	0.00	37.32	2.74
2398	4700	2.149578	GACAGTTCTCATTGCTGCTGT	58.850	47.619	0.00	0.00	39.51	4.40
2399	4701	2.415857	GAGACAGTTCTCATTGCTGCTG	59.584	50.000	0.00	0.00	46.84	4.41
2400	4702	2.697654	GAGACAGTTCTCATTGCTGCT	58.302	47.619	0.00	0.00	46.84	4.24
2439	4741	1.468565	GCATTGCAGCACAGTACCATG	60.469	52.381	3.15	0.00	0.00	3.66
2483	4785	9.476202	TGTACAACGGATATTTCATTGATCTAG	57.524	33.333	0.00	0.00	0.00	2.43
2515	4818	0.612174	GGAAACCCCCTCTTGCTTCC	60.612	60.000	0.00	0.00	0.00	3.46
2534	4839	3.030291	ACTCCTCTTGGCTCTATGTCTG	58.970	50.000	0.00	0.00	0.00	3.51
2548	4853	4.020543	GTGACTTACATCCTGACTCCTCT	58.979	47.826	0.00	0.00	0.00	3.69
2592	4897	9.192642	GATAAATAAACTTGGCTTTTACCCCTA	57.807	33.333	0.00	0.00	0.00	3.53
2593	4898	7.676468	TGATAAATAAACTTGGCTTTTACCCCT	59.324	33.333	0.00	0.00	0.00	4.79
2662	4974	1.149361	GCACGTCACGTCTGGTTTGA	61.149	55.000	0.00	0.00	38.32	2.69
2680	4992	3.793559	TCTCGCTATTTTTAGGACAGGC	58.206	45.455	0.00	0.00	0.00	4.85
2692	5004	9.988815	ATACAATCTAGTCAAATTCTCGCTATT	57.011	29.630	0.00	0.00	0.00	1.73
2694	5006	7.382488	GCATACAATCTAGTCAAATTCTCGCTA	59.618	37.037	0.00	0.00	0.00	4.26
2703	5015	7.168219	ACTTTGAGGCATACAATCTAGTCAAA	58.832	34.615	0.00	0.00	33.05	2.69
2707	5019	8.100791	TGTTAACTTTGAGGCATACAATCTAGT	58.899	33.333	7.22	0.00	0.00	2.57
2713	5025	4.824537	TGCTGTTAACTTTGAGGCATACAA	59.175	37.500	7.22	0.00	0.00	2.41
2717	5029	2.226437	CGTGCTGTTAACTTTGAGGCAT	59.774	45.455	7.22	0.00	0.00	4.40
2739	5051	5.232838	CCAGTGTGATTTTGTTTTTGAGAGC	59.767	40.000	0.00	0.00	0.00	4.09
2756	5068	1.959042	AGCAGTTCAGTTCCAGTGTG	58.041	50.000	0.00	0.00	0.00	3.82
2763	5075	9.600646	GAGATAAAGTTTAAAGCAGTTCAGTTC	57.399	33.333	0.00	0.00	0.00	3.01
2877	5189	2.439104	GGCTTTGGTTGGTTGGCCA	61.439	57.895	0.00	0.00	44.38	5.36
2878	5190	2.425592	GGCTTTGGTTGGTTGGCC	59.574	61.111	0.00	0.00	0.00	5.36
2883	5195	1.065782	GTTTTGTGGGCTTTGGTTGGT	60.066	47.619	0.00	0.00	0.00	3.67
2910	5222	1.291906	GGGATTTGTTTGTGCCGGG	59.708	57.895	2.18	0.00	0.00	5.73
2934	5246	4.156622	GGCGGCGGCGTTAGAAAC	62.157	66.667	32.35	13.66	41.24	2.78
2971	5283	1.906574	GGGGACACTGGACACAATCTA	59.093	52.381	0.00	0.00	0.00	1.98
2972	5284	0.693049	GGGGACACTGGACACAATCT	59.307	55.000	0.00	0.00	0.00	2.40
2973	5285	0.322546	GGGGGACACTGGACACAATC	60.323	60.000	0.00	0.00	0.00	2.67
2974	5286	1.065410	TGGGGGACACTGGACACAAT	61.065	55.000	0.00	0.00	0.00	2.71
2975	5287	1.282653	TTGGGGGACACTGGACACAA	61.283	55.000	0.00	0.00	0.00	3.33
2977	5289	1.228154	GTTGGGGGACACTGGACAC	60.228	63.158	0.00	0.00	0.00	3.67
2979	5291	2.032071	CGTTGGGGGACACTGGAC	59.968	66.667	0.00	0.00	0.00	4.02
2980	5292	2.122769	TCGTTGGGGGACACTGGA	60.123	61.111	0.00	0.00	0.00	3.86
2983	5322	2.122547	ACCTCGTTGGGGGACACT	60.123	61.111	2.69	0.00	41.11	3.55
2993	5332	0.462789	ACCGACAAACAGACCTCGTT	59.537	50.000	0.00	0.00	0.00	3.85
2994	5333	0.249322	CACCGACAAACAGACCTCGT	60.249	55.000	0.00	0.00	0.00	4.18
2995	5334	0.249322	ACACCGACAAACAGACCTCG	60.249	55.000	0.00	0.00	0.00	4.63
2997	5336	0.249322	CGACACCGACAAACAGACCT	60.249	55.000	0.00	0.00	38.22	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.