Multiple sequence alignment - TraesCS2B01G144600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G144600 chr2B 100.000 2999 0 0 1 2999 110580544 110583542 0.000000e+00 5539.0
1 TraesCS2B01G144600 chr2B 92.365 537 35 6 1 536 25793342 25793873 0.000000e+00 760.0
2 TraesCS2B01G144600 chr2B 97.483 437 11 0 100 536 110575141 110575577 0.000000e+00 747.0
3 TraesCS2B01G144600 chr2B 91.991 437 33 2 100 536 25787939 25788373 1.980000e-171 612.0
4 TraesCS2B01G144600 chr2B 86.667 165 14 8 1 159 720932814 720932976 3.070000e-40 176.0
5 TraesCS2B01G144600 chr2A 89.601 1327 89 23 773 2061 71798852 71797537 0.000000e+00 1640.0
6 TraesCS2B01G144600 chr2A 91.950 882 55 11 1182 2061 71694136 71695003 0.000000e+00 1221.0
7 TraesCS2B01G144600 chr2A 86.705 346 39 4 2063 2407 71695197 71695536 7.850000e-101 377.0
8 TraesCS2B01G144600 chr2A 89.427 227 20 3 2664 2889 575679082 575678859 1.760000e-72 283.0
9 TraesCS2B01G144600 chr2A 88.987 227 21 3 2664 2889 650614311 650614534 8.190000e-71 278.0
10 TraesCS2B01G144600 chr2A 89.881 168 12 3 2406 2569 71695630 71695796 8.420000e-51 211.0
11 TraesCS2B01G144600 chr2A 90.780 141 8 3 732 867 71692148 71692288 1.840000e-42 183.0
12 TraesCS2B01G144600 chr5B 93.110 537 32 5 1 536 603429663 603429131 0.000000e+00 782.0
13 TraesCS2B01G144600 chr5B 91.762 437 33 3 100 536 603436792 603436359 3.310000e-169 604.0
14 TraesCS2B01G144600 chr4B 92.727 440 29 3 98 536 279975561 279975124 1.520000e-177 632.0
15 TraesCS2B01G144600 chr6A 91.991 437 32 3 100 536 201638499 201638066 7.110000e-171 610.0
16 TraesCS2B01G144600 chr6A 91.762 437 33 3 100 536 201633127 201632694 3.310000e-169 604.0
17 TraesCS2B01G144600 chr6A 100.000 29 0 0 686 714 17591416 17591444 2.000000e-03 54.7
18 TraesCS2B01G144600 chr5D 86.852 540 61 10 1 536 406963199 406962666 1.990000e-166 595.0
19 TraesCS2B01G144600 chr5D 89.868 227 19 3 2664 2889 445093570 445093347 3.780000e-74 289.0
20 TraesCS2B01G144600 chr5D 94.054 185 11 0 549 733 310265007 310265191 6.330000e-72 281.0
21 TraesCS2B01G144600 chr2D 85.635 543 50 8 736 1265 73128293 73128820 2.030000e-151 545.0
22 TraesCS2B01G144600 chr2D 95.533 291 9 3 2664 2953 73128850 73129137 2.110000e-126 462.0
23 TraesCS2B01G144600 chr3B 90.749 227 17 3 2664 2889 61990980 61990757 1.750000e-77 300.0
24 TraesCS2B01G144600 chr7D 90.308 227 18 3 2664 2889 202030197 202030420 8.130000e-76 294.0
25 TraesCS2B01G144600 chr7A 89.868 227 19 3 2664 2889 671522183 671521960 3.780000e-74 289.0
26 TraesCS2B01G144600 chr6D 89.427 227 20 3 2664 2889 104065897 104066120 1.760000e-72 283.0
27 TraesCS2B01G144600 chr1D 92.268 194 14 1 541 733 389557338 389557531 1.060000e-69 274.0
28 TraesCS2B01G144600 chr4A 83.645 214 15 9 2664 2875 359179878 359180073 1.840000e-42 183.0
29 TraesCS2B01G144600 chr1A 85.816 141 8 8 20 152 97964591 97964455 4.030000e-29 139.0
30 TraesCS2B01G144600 chr4D 92.754 69 5 0 668 736 440265064 440265132 1.900000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G144600 chr2B 110580544 110583542 2998 False 5539.0 5539 100.000 1 2999 1 chr2B.!!$F4 2998
1 TraesCS2B01G144600 chr2B 25793342 25793873 531 False 760.0 760 92.365 1 536 1 chr2B.!!$F2 535
2 TraesCS2B01G144600 chr2A 71797537 71798852 1315 True 1640.0 1640 89.601 773 2061 1 chr2A.!!$R1 1288
3 TraesCS2B01G144600 chr2A 71692148 71695796 3648 False 498.0 1221 89.829 732 2569 4 chr2A.!!$F2 1837
4 TraesCS2B01G144600 chr5B 603429131 603429663 532 True 782.0 782 93.110 1 536 1 chr5B.!!$R1 535
5 TraesCS2B01G144600 chr5D 406962666 406963199 533 True 595.0 595 86.852 1 536 1 chr5D.!!$R1 535
6 TraesCS2B01G144600 chr2D 73128293 73129137 844 False 503.5 545 90.584 736 2953 2 chr2D.!!$F1 2217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 632 0.036388 TTGCGATGTGAGAAGGACCC 60.036 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 4471 0.036732 TGCCCAAGAGCAACCTAGTG 59.963 55.0 0.0 0.0 40.56 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 22 1.591504 CCCGACACCGAAATTTGGGG 61.592 60.000 21.59 14.09 38.22 4.96
21 23 1.591504 CCGACACCGAAATTTGGGGG 61.592 60.000 18.99 18.99 38.22 5.40
62 64 0.608130 CCAGTTCGTGGTCAGATCCA 59.392 55.000 0.00 0.00 42.17 3.41
124 127 2.439507 AGGACCTCAACACATCACAACT 59.560 45.455 0.00 0.00 0.00 3.16
152 155 0.682209 ACTCGAACTAGCCCCGCTTA 60.682 55.000 0.00 0.00 40.44 3.09
197 200 3.724478 ACAGATACAGGGGTTCAGATCA 58.276 45.455 0.00 0.00 0.00 2.92
226 229 5.486063 TCTGCCCAATTTCTACCAAGTACTA 59.514 40.000 0.00 0.00 0.00 1.82
237 240 7.037342 TCTACCAAGTACTACTAGGGTTCTT 57.963 40.000 14.54 0.00 37.28 2.52
252 255 4.078747 AGGGTTCTTAGGGTAGCTAGCTAA 60.079 45.833 25.74 11.16 0.00 3.09
259 262 6.715718 TCTTAGGGTAGCTAGCTAATACACTG 59.284 42.308 24.90 13.12 34.16 3.66
268 271 5.755861 GCTAGCTAATACACTGGGAGAAAAG 59.244 44.000 7.70 0.00 0.00 2.27
272 275 2.426431 TACACTGGGAGAAAAGGGGA 57.574 50.000 0.00 0.00 0.00 4.81
284 287 5.359292 GGAGAAAAGGGGAAAAGATGATCTG 59.641 44.000 0.00 0.00 0.00 2.90
310 313 1.744014 GCGAGCGGGTCCCTTATAA 59.256 57.895 6.29 0.00 0.00 0.98
312 315 0.748450 CGAGCGGGTCCCTTATAACA 59.252 55.000 6.29 0.00 0.00 2.41
314 317 2.037144 GAGCGGGTCCCTTATAACAGA 58.963 52.381 6.29 0.00 0.00 3.41
365 368 0.319083 TCCGTTGCCGTCACTGTTAT 59.681 50.000 0.00 0.00 0.00 1.89
408 411 0.104304 GTGACGGTGAACAGGACACT 59.896 55.000 0.00 0.00 38.20 3.55
436 440 2.422479 CCGTCGATCTTCACTTACTGGA 59.578 50.000 0.00 0.00 0.00 3.86
461 465 1.003112 CCAACCGTCCGATTCCCAA 60.003 57.895 0.00 0.00 0.00 4.12
475 479 0.250901 TCCCAAAGGCTGAACTCTGC 60.251 55.000 0.00 0.26 39.66 4.26
479 483 1.196354 CAAAGGCTGAACTCTGCTTCG 59.804 52.381 8.27 0.00 40.16 3.79
519 523 6.679327 GTTCTTCAGTTAACCAGAACAAGT 57.321 37.500 24.61 0.00 43.13 3.16
539 543 4.874521 TCAGGGTCCTGACAGAGG 57.125 61.111 15.14 0.00 46.80 3.69
540 544 1.079256 TCAGGGTCCTGACAGAGGG 59.921 63.158 15.14 0.00 46.80 4.30
541 545 1.992277 CAGGGTCCTGACAGAGGGG 60.992 68.421 11.39 0.00 46.30 4.79
542 546 2.689034 GGGTCCTGACAGAGGGGG 60.689 72.222 3.32 0.00 43.06 5.40
574 578 4.511443 GCTGCGAGCATGCGACAC 62.511 66.667 13.01 5.56 41.89 3.67
575 579 2.812609 CTGCGAGCATGCGACACT 60.813 61.111 13.01 0.00 37.81 3.55
576 580 3.079941 CTGCGAGCATGCGACACTG 62.080 63.158 13.01 5.38 37.81 3.66
577 581 4.511443 GCGAGCATGCGACACTGC 62.511 66.667 13.01 7.52 38.69 4.40
580 584 3.571119 AGCATGCGACACTGCTTC 58.429 55.556 13.01 0.00 46.22 3.86
581 585 2.037136 AGCATGCGACACTGCTTCC 61.037 57.895 13.01 0.00 46.22 3.46
582 586 3.044059 GCATGCGACACTGCTTCCC 62.044 63.158 0.00 0.00 35.49 3.97
583 587 2.045926 ATGCGACACTGCTTCCCC 60.046 61.111 0.00 0.00 35.36 4.81
584 588 2.894257 ATGCGACACTGCTTCCCCA 61.894 57.895 0.00 0.00 35.36 4.96
585 589 2.045926 GCGACACTGCTTCCCCAT 60.046 61.111 0.00 0.00 0.00 4.00
586 590 2.401766 GCGACACTGCTTCCCCATG 61.402 63.158 0.00 0.00 0.00 3.66
587 591 1.746615 CGACACTGCTTCCCCATGG 60.747 63.158 4.14 4.14 0.00 3.66
588 592 2.036256 ACACTGCTTCCCCATGGC 59.964 61.111 6.09 0.00 0.00 4.40
589 593 3.136123 CACTGCTTCCCCATGGCG 61.136 66.667 6.09 0.00 0.00 5.69
590 594 3.329889 ACTGCTTCCCCATGGCGA 61.330 61.111 6.09 0.00 0.00 5.54
591 595 2.825836 CTGCTTCCCCATGGCGAC 60.826 66.667 6.09 0.00 0.00 5.19
606 610 3.712881 GACACGGTCGTTGGCTGC 61.713 66.667 0.00 0.00 0.00 5.25
607 611 4.539083 ACACGGTCGTTGGCTGCA 62.539 61.111 0.50 0.00 0.00 4.41
608 612 3.716006 CACGGTCGTTGGCTGCAG 61.716 66.667 10.11 10.11 0.00 4.41
609 613 4.235762 ACGGTCGTTGGCTGCAGT 62.236 61.111 16.64 0.00 0.00 4.40
610 614 2.972505 CGGTCGTTGGCTGCAGTT 60.973 61.111 16.64 0.00 0.00 3.16
611 615 2.639286 GGTCGTTGGCTGCAGTTG 59.361 61.111 16.64 1.08 0.00 3.16
612 616 2.050985 GTCGTTGGCTGCAGTTGC 60.051 61.111 16.64 0.91 42.50 4.17
613 617 3.648982 TCGTTGGCTGCAGTTGCG 61.649 61.111 16.64 14.49 45.83 4.85
614 618 3.648982 CGTTGGCTGCAGTTGCGA 61.649 61.111 16.64 0.00 45.83 5.10
615 619 2.956987 GTTGGCTGCAGTTGCGAT 59.043 55.556 16.64 0.00 45.83 4.58
616 620 1.443194 GTTGGCTGCAGTTGCGATG 60.443 57.895 16.64 0.00 45.83 3.84
617 621 1.898094 TTGGCTGCAGTTGCGATGT 60.898 52.632 16.64 0.00 45.83 3.06
618 622 2.132517 TTGGCTGCAGTTGCGATGTG 62.133 55.000 16.64 0.00 45.83 3.21
619 623 2.327343 GGCTGCAGTTGCGATGTGA 61.327 57.895 16.64 0.00 45.83 3.58
620 624 1.134075 GCTGCAGTTGCGATGTGAG 59.866 57.895 16.64 0.00 45.83 3.51
621 625 1.293963 GCTGCAGTTGCGATGTGAGA 61.294 55.000 16.64 0.00 45.83 3.27
622 626 1.150827 CTGCAGTTGCGATGTGAGAA 58.849 50.000 5.25 0.00 45.83 2.87
623 627 1.128136 CTGCAGTTGCGATGTGAGAAG 59.872 52.381 5.25 0.00 45.83 2.85
624 628 0.445436 GCAGTTGCGATGTGAGAAGG 59.555 55.000 0.00 0.00 0.00 3.46
625 629 1.941209 GCAGTTGCGATGTGAGAAGGA 60.941 52.381 0.00 0.00 0.00 3.36
626 630 1.728971 CAGTTGCGATGTGAGAAGGAC 59.271 52.381 0.00 0.00 0.00 3.85
627 631 1.079503 GTTGCGATGTGAGAAGGACC 58.920 55.000 0.00 0.00 0.00 4.46
628 632 0.036388 TTGCGATGTGAGAAGGACCC 60.036 55.000 0.00 0.00 0.00 4.46
629 633 1.519455 GCGATGTGAGAAGGACCCG 60.519 63.158 0.00 0.00 0.00 5.28
630 634 1.890894 CGATGTGAGAAGGACCCGT 59.109 57.895 0.00 0.00 0.00 5.28
631 635 0.179134 CGATGTGAGAAGGACCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
632 636 1.187087 GATGTGAGAAGGACCCGTCT 58.813 55.000 4.18 4.18 37.48 4.18
633 637 1.550976 GATGTGAGAAGGACCCGTCTT 59.449 52.381 5.99 0.00 35.07 3.01
634 638 2.297698 TGTGAGAAGGACCCGTCTTA 57.702 50.000 5.99 0.00 35.07 2.10
635 639 2.168496 TGTGAGAAGGACCCGTCTTAG 58.832 52.381 5.99 0.00 35.07 2.18
636 640 1.135053 GTGAGAAGGACCCGTCTTAGC 60.135 57.143 5.99 0.00 35.07 3.09
637 641 0.100861 GAGAAGGACCCGTCTTAGCG 59.899 60.000 5.99 0.00 35.07 4.26
638 642 0.611340 AGAAGGACCCGTCTTAGCGT 60.611 55.000 0.00 0.00 31.00 5.07
639 643 0.245813 GAAGGACCCGTCTTAGCGTT 59.754 55.000 0.00 0.00 0.00 4.84
640 644 0.037605 AAGGACCCGTCTTAGCGTTG 60.038 55.000 0.00 0.00 0.00 4.10
641 645 0.896940 AGGACCCGTCTTAGCGTTGA 60.897 55.000 0.00 0.00 0.00 3.18
642 646 0.735287 GGACCCGTCTTAGCGTTGAC 60.735 60.000 0.00 0.00 0.00 3.18
643 647 0.735287 GACCCGTCTTAGCGTTGACC 60.735 60.000 0.00 0.00 0.00 4.02
644 648 1.804326 CCCGTCTTAGCGTTGACCG 60.804 63.158 0.00 0.00 40.40 4.79
645 649 1.210931 CCGTCTTAGCGTTGACCGA 59.789 57.895 0.00 0.00 39.56 4.69
646 650 0.179145 CCGTCTTAGCGTTGACCGAT 60.179 55.000 0.00 0.00 39.56 4.18
647 651 1.189403 CGTCTTAGCGTTGACCGATC 58.811 55.000 0.00 0.00 39.56 3.69
648 652 1.557651 GTCTTAGCGTTGACCGATCC 58.442 55.000 0.00 0.00 39.56 3.36
649 653 1.135199 GTCTTAGCGTTGACCGATCCA 60.135 52.381 0.00 0.00 39.56 3.41
650 654 1.546923 TCTTAGCGTTGACCGATCCAA 59.453 47.619 0.00 0.00 39.56 3.53
651 655 1.659098 CTTAGCGTTGACCGATCCAAC 59.341 52.381 3.90 3.90 40.19 3.77
652 656 0.604073 TAGCGTTGACCGATCCAACA 59.396 50.000 12.07 0.00 42.83 3.33
653 657 0.670546 AGCGTTGACCGATCCAACAG 60.671 55.000 12.07 7.19 42.83 3.16
654 658 1.787847 CGTTGACCGATCCAACAGC 59.212 57.895 12.07 0.98 42.83 4.40
655 659 0.670546 CGTTGACCGATCCAACAGCT 60.671 55.000 12.07 0.00 42.83 4.24
656 660 1.079503 GTTGACCGATCCAACAGCTC 58.920 55.000 8.05 0.00 42.40 4.09
657 661 0.976641 TTGACCGATCCAACAGCTCT 59.023 50.000 0.00 0.00 0.00 4.09
658 662 1.847328 TGACCGATCCAACAGCTCTA 58.153 50.000 0.00 0.00 0.00 2.43
659 663 2.176045 TGACCGATCCAACAGCTCTAA 58.824 47.619 0.00 0.00 0.00 2.10
660 664 2.166459 TGACCGATCCAACAGCTCTAAG 59.834 50.000 0.00 0.00 0.00 2.18
661 665 1.482593 ACCGATCCAACAGCTCTAAGG 59.517 52.381 0.00 0.00 0.00 2.69
662 666 1.202580 CCGATCCAACAGCTCTAAGGG 60.203 57.143 0.00 0.00 0.00 3.95
663 667 1.202580 CGATCCAACAGCTCTAAGGGG 60.203 57.143 0.00 0.00 0.00 4.79
664 668 2.119495 GATCCAACAGCTCTAAGGGGA 58.881 52.381 0.00 0.00 0.00 4.81
665 669 2.270434 TCCAACAGCTCTAAGGGGAT 57.730 50.000 0.00 0.00 0.00 3.85
666 670 1.839994 TCCAACAGCTCTAAGGGGATG 59.160 52.381 0.00 0.00 0.00 3.51
667 671 1.133976 CCAACAGCTCTAAGGGGATGG 60.134 57.143 0.00 0.00 0.00 3.51
668 672 1.839994 CAACAGCTCTAAGGGGATGGA 59.160 52.381 0.00 0.00 0.00 3.41
669 673 2.441001 CAACAGCTCTAAGGGGATGGAT 59.559 50.000 0.00 0.00 0.00 3.41
670 674 2.334023 ACAGCTCTAAGGGGATGGATC 58.666 52.381 0.00 0.00 0.00 3.36
671 675 1.627834 CAGCTCTAAGGGGATGGATCC 59.372 57.143 4.20 4.20 46.41 3.36
679 683 2.919043 GGATGGATCCAACGGCCT 59.081 61.111 20.67 0.00 46.38 5.19
680 684 1.526917 GGATGGATCCAACGGCCTG 60.527 63.158 20.67 0.00 46.38 4.85
681 685 2.124151 ATGGATCCAACGGCCTGC 60.124 61.111 20.67 0.00 0.00 4.85
682 686 4.776322 TGGATCCAACGGCCTGCG 62.776 66.667 13.46 0.00 0.00 5.18
683 687 4.467084 GGATCCAACGGCCTGCGA 62.467 66.667 6.95 0.00 0.00 5.10
684 688 3.195698 GATCCAACGGCCTGCGAC 61.196 66.667 0.00 0.00 0.00 5.19
685 689 4.778143 ATCCAACGGCCTGCGACC 62.778 66.667 0.00 0.00 0.00 4.79
693 697 4.148825 GCCTGCGACCCGACTGAT 62.149 66.667 0.00 0.00 0.00 2.90
694 698 2.579201 CCTGCGACCCGACTGATT 59.421 61.111 0.00 0.00 0.00 2.57
695 699 1.079127 CCTGCGACCCGACTGATTT 60.079 57.895 0.00 0.00 0.00 2.17
696 700 1.084370 CCTGCGACCCGACTGATTTC 61.084 60.000 0.00 0.00 0.00 2.17
697 701 1.079405 TGCGACCCGACTGATTTCC 60.079 57.895 0.00 0.00 0.00 3.13
698 702 1.218316 GCGACCCGACTGATTTCCT 59.782 57.895 0.00 0.00 0.00 3.36
699 703 0.806492 GCGACCCGACTGATTTCCTC 60.806 60.000 0.00 0.00 0.00 3.71
700 704 0.525668 CGACCCGACTGATTTCCTCG 60.526 60.000 0.00 0.00 0.00 4.63
701 705 0.815734 GACCCGACTGATTTCCTCGA 59.184 55.000 0.00 0.00 0.00 4.04
702 706 0.818296 ACCCGACTGATTTCCTCGAG 59.182 55.000 5.13 5.13 0.00 4.04
703 707 1.103803 CCCGACTGATTTCCTCGAGA 58.896 55.000 15.71 0.00 0.00 4.04
704 708 1.476891 CCCGACTGATTTCCTCGAGAA 59.523 52.381 15.71 0.65 0.00 2.87
713 717 2.941453 TTCCTCGAGAAATCAGTCGG 57.059 50.000 15.71 0.00 36.81 4.79
714 718 1.835494 TCCTCGAGAAATCAGTCGGT 58.165 50.000 15.71 0.00 36.81 4.69
715 719 2.168496 TCCTCGAGAAATCAGTCGGTT 58.832 47.619 15.71 0.00 36.81 4.44
716 720 2.094700 TCCTCGAGAAATCAGTCGGTTG 60.095 50.000 15.71 0.00 36.81 3.77
717 721 2.094700 CCTCGAGAAATCAGTCGGTTGA 60.095 50.000 15.71 0.00 36.81 3.18
718 722 3.429547 CCTCGAGAAATCAGTCGGTTGAT 60.430 47.826 15.71 0.00 39.42 2.57
719 723 4.177026 CTCGAGAAATCAGTCGGTTGATT 58.823 43.478 6.58 8.80 46.81 2.57
720 724 4.174009 TCGAGAAATCAGTCGGTTGATTC 58.826 43.478 13.28 8.75 44.74 2.52
721 725 3.000674 CGAGAAATCAGTCGGTTGATTCG 60.001 47.826 13.28 10.26 44.74 3.34
722 726 3.926616 AGAAATCAGTCGGTTGATTCGT 58.073 40.909 13.28 2.58 44.74 3.85
723 727 5.068234 AGAAATCAGTCGGTTGATTCGTA 57.932 39.130 13.28 0.00 44.74 3.43
724 728 5.103000 AGAAATCAGTCGGTTGATTCGTAG 58.897 41.667 13.28 0.00 44.74 3.51
725 729 2.273370 TCAGTCGGTTGATTCGTAGC 57.727 50.000 0.00 0.00 0.00 3.58
726 730 1.542472 TCAGTCGGTTGATTCGTAGCA 59.458 47.619 0.00 0.00 0.00 3.49
727 731 1.920574 CAGTCGGTTGATTCGTAGCAG 59.079 52.381 0.00 0.00 0.00 4.24
728 732 0.645868 GTCGGTTGATTCGTAGCAGC 59.354 55.000 0.00 0.00 0.00 5.25
729 733 0.459585 TCGGTTGATTCGTAGCAGCC 60.460 55.000 3.08 3.08 37.65 4.85
730 734 2.006772 GGTTGATTCGTAGCAGCCG 58.993 57.895 0.00 0.00 31.31 5.52
731 735 1.348594 GTTGATTCGTAGCAGCCGC 59.651 57.895 0.00 0.00 38.99 6.53
732 736 1.813753 TTGATTCGTAGCAGCCGCC 60.814 57.895 0.00 0.00 39.83 6.13
733 737 2.202878 GATTCGTAGCAGCCGCCA 60.203 61.111 0.00 0.00 39.83 5.69
738 742 0.108089 TCGTAGCAGCCGCCATAAAA 60.108 50.000 0.00 0.00 39.83 1.52
808 816 4.504858 ACCGAGAAATATTCGAAACAGCT 58.495 39.130 0.00 0.00 40.36 4.24
816 824 7.708752 AGAAATATTCGAAACAGCTAAGGAGAG 59.291 37.037 0.00 0.00 34.02 3.20
902 1406 1.208165 AATCCCCTGTCTCCACACCC 61.208 60.000 0.00 0.00 0.00 4.61
903 1407 2.415962 ATCCCCTGTCTCCACACCCA 62.416 60.000 0.00 0.00 0.00 4.51
904 1408 2.750350 CCCTGTCTCCACACCCAC 59.250 66.667 0.00 0.00 0.00 4.61
905 1409 2.750350 CCTGTCTCCACACCCACC 59.250 66.667 0.00 0.00 0.00 4.61
906 1410 2.750350 CTGTCTCCACACCCACCC 59.250 66.667 0.00 0.00 0.00 4.61
907 1411 2.852075 TGTCTCCACACCCACCCC 60.852 66.667 0.00 0.00 0.00 4.95
908 1412 4.016706 GTCTCCACACCCACCCCG 62.017 72.222 0.00 0.00 0.00 5.73
909 1413 4.242586 TCTCCACACCCACCCCGA 62.243 66.667 0.00 0.00 0.00 5.14
910 1414 4.016706 CTCCACACCCACCCCGAC 62.017 72.222 0.00 0.00 0.00 4.79
913 1417 4.373116 CACACCCACCCCGACGAG 62.373 72.222 0.00 0.00 0.00 4.18
1007 1537 2.279517 GACGCGTCCTATGGCCAG 60.280 66.667 28.61 0.00 0.00 4.85
1054 1584 1.925972 GGAGGCTCCCAGGAGGTTT 60.926 63.158 23.49 0.00 42.19 3.27
1093 1623 4.156190 CCCGCGTACTATATGATCTCTGTT 59.844 45.833 4.92 0.00 0.00 3.16
1121 1651 0.104409 AGGGTTCCACTTCCACTCCT 60.104 55.000 0.00 0.00 0.00 3.69
1123 1653 1.982958 GGGTTCCACTTCCACTCCTAA 59.017 52.381 0.00 0.00 0.00 2.69
1126 1656 1.952621 TCCACTTCCACTCCTAAGGG 58.047 55.000 0.00 0.00 0.00 3.95
1170 1701 4.630644 ATCCATATCTTTCTGCATCCGT 57.369 40.909 0.00 0.00 0.00 4.69
1192 2774 5.220135 CGTTCGCTTAATAATTTGCCAAACC 60.220 40.000 0.00 0.00 0.00 3.27
1271 2859 2.356535 GGACCAGCTGATTCCAGTCATT 60.357 50.000 22.87 0.00 42.35 2.57
1280 2868 4.503910 TGATTCCAGTCATTTACCAGTCG 58.496 43.478 0.00 0.00 0.00 4.18
1379 2980 4.030216 AGGAAATTAATCACCCCGCAAAT 58.970 39.130 7.10 0.00 0.00 2.32
1504 3105 5.302568 TGATTCATTTGCTCTCCTTTTGTGT 59.697 36.000 0.00 0.00 0.00 3.72
1529 3130 3.376859 TCACGCTGGGCTATAAATTGTTG 59.623 43.478 0.00 0.00 0.00 3.33
1622 3223 3.110447 TGCTTGAGCCAAATGTTTTCC 57.890 42.857 0.00 0.00 41.18 3.13
1659 3260 1.129437 ACGACGAGTACTACCGAAAGC 59.871 52.381 10.62 0.00 0.00 3.51
1771 3372 1.740296 CCGGAGTTGGCAAGGTACG 60.740 63.158 0.00 3.38 0.00 3.67
1797 3398 2.276732 ACATGTGTCCTCCTGGTTTG 57.723 50.000 0.00 0.00 34.23 2.93
1798 3399 1.494721 ACATGTGTCCTCCTGGTTTGT 59.505 47.619 0.00 0.00 34.23 2.83
1803 3404 2.758423 GTGTCCTCCTGGTTTGTTTTGT 59.242 45.455 0.00 0.00 34.23 2.83
1804 3405 3.020984 TGTCCTCCTGGTTTGTTTTGTC 58.979 45.455 0.00 0.00 34.23 3.18
1812 3414 2.621055 TGGTTTGTTTTGTCGGATGAGG 59.379 45.455 0.00 0.00 0.00 3.86
1816 3418 3.417069 TGTTTTGTCGGATGAGGTGAT 57.583 42.857 0.00 0.00 0.00 3.06
1821 3423 7.279615 TGTTTTGTCGGATGAGGTGATATATT 58.720 34.615 0.00 0.00 0.00 1.28
1844 3447 8.848474 ATTACATAGAGGGGAATTAATCAACG 57.152 34.615 0.00 0.00 0.00 4.10
1871 3474 4.517453 TGTTGTATTGTAGGTGTTTCTGGC 59.483 41.667 0.00 0.00 0.00 4.85
1875 3478 6.658849 TGTATTGTAGGTGTTTCTGGCATAT 58.341 36.000 0.00 0.00 0.00 1.78
1962 3565 3.073062 AGGTGTTTGCTGTGTTCTATCCT 59.927 43.478 0.00 0.00 0.00 3.24
2061 3664 7.905493 GTGTCTCAAAGCATACTTAAGCATAAC 59.095 37.037 1.29 0.00 34.05 1.89
2062 3665 7.824289 TGTCTCAAAGCATACTTAAGCATAACT 59.176 33.333 1.29 0.00 34.05 2.24
2063 3666 8.119226 GTCTCAAAGCATACTTAAGCATAACTG 58.881 37.037 1.29 0.00 34.05 3.16
2064 3667 7.824289 TCTCAAAGCATACTTAAGCATAACTGT 59.176 33.333 1.29 0.00 34.05 3.55
2083 3879 5.562635 ACTGTAAAATCCCGTATTTGTCCA 58.437 37.500 0.00 0.00 37.85 4.02
2087 3883 7.110810 TGTAAAATCCCGTATTTGTCCATACA 58.889 34.615 0.00 0.00 37.85 2.29
2088 3884 7.776030 TGTAAAATCCCGTATTTGTCCATACAT 59.224 33.333 0.00 0.00 37.85 2.29
2102 3898 8.755696 TTGTCCATACATTTAGCATTTTTGTC 57.244 30.769 0.00 0.00 34.97 3.18
2103 3899 7.026562 TGTCCATACATTTAGCATTTTTGTCG 58.973 34.615 0.00 0.00 0.00 4.35
2109 3905 6.686630 ACATTTAGCATTTTTGTCGGAATGA 58.313 32.000 0.00 0.00 35.74 2.57
2116 3912 5.623368 GCATTTTTGTCGGAATGATTACCCA 60.623 40.000 0.62 0.00 35.74 4.51
2117 3913 5.637006 TTTTTGTCGGAATGATTACCCAG 57.363 39.130 0.00 0.00 0.00 4.45
2118 3914 4.561500 TTTGTCGGAATGATTACCCAGA 57.438 40.909 0.00 0.00 0.00 3.86
2119 3915 4.771114 TTGTCGGAATGATTACCCAGAT 57.229 40.909 0.00 0.00 0.00 2.90
2125 3921 4.991056 CGGAATGATTACCCAGATACACTG 59.009 45.833 0.00 0.00 45.36 3.66
2164 3960 9.701098 AGTTCAATCGTACAGTTAGATAACAAA 57.299 29.630 5.59 0.00 38.62 2.83
2170 3966 8.970691 TCGTACAGTTAGATAACAAACCTAAC 57.029 34.615 5.59 0.00 41.32 2.34
2179 3975 7.596749 AGATAACAAACCTAACGTTGATCTG 57.403 36.000 11.99 4.50 33.93 2.90
2233 4029 2.644418 TTGCTCACAACCGCATGC 59.356 55.556 7.91 7.91 35.85 4.06
2254 4050 4.202441 GCATCAGGGACTCAAATGTGTAT 58.798 43.478 0.00 0.00 34.60 2.29
2281 4077 4.823989 CCATTAGAATGTCCTAAGCAAGGG 59.176 45.833 5.38 0.00 38.50 3.95
2289 4085 1.186200 CCTAAGCAAGGGCCTTTTCC 58.814 55.000 18.16 8.15 42.32 3.13
2299 4095 3.168292 AGGGCCTTTTCCAGAAATTCAG 58.832 45.455 0.00 0.00 0.00 3.02
2309 4105 0.918983 AGAAATTCAGGGCGGGATGA 59.081 50.000 0.00 0.00 0.00 2.92
2313 4109 2.230130 ATTCAGGGCGGGATGAAAAA 57.770 45.000 0.00 0.00 38.80 1.94
2314 4110 2.230130 TTCAGGGCGGGATGAAAAAT 57.770 45.000 0.00 0.00 32.66 1.82
2490 4384 4.558538 AGAAATTACCTCATTCATGCGC 57.441 40.909 0.00 0.00 0.00 6.09
2499 4393 4.273480 ACCTCATTCATGCGCAAGTAATAC 59.727 41.667 17.11 0.00 41.68 1.89
2506 4400 9.018716 CATTCATGCGCAAGTAATACATTTTAA 57.981 29.630 17.11 0.00 41.68 1.52
2562 4456 4.319622 CGTCCTACTTCTAACCTAGCATCG 60.320 50.000 0.00 0.00 0.00 3.84
2569 4463 3.628008 TCTAACCTAGCATCGAGGACAA 58.372 45.455 0.00 0.00 37.53 3.18
2570 4464 2.969628 AACCTAGCATCGAGGACAAG 57.030 50.000 0.00 0.00 37.53 3.16
2571 4465 1.853963 ACCTAGCATCGAGGACAAGT 58.146 50.000 0.00 0.00 37.53 3.16
2572 4466 3.014304 ACCTAGCATCGAGGACAAGTA 57.986 47.619 0.00 0.00 37.53 2.24
2573 4467 3.362706 ACCTAGCATCGAGGACAAGTAA 58.637 45.455 0.00 0.00 37.53 2.24
2574 4468 3.767673 ACCTAGCATCGAGGACAAGTAAA 59.232 43.478 0.00 0.00 37.53 2.01
2575 4469 4.113354 CCTAGCATCGAGGACAAGTAAAC 58.887 47.826 0.00 0.00 35.99 2.01
2576 4470 3.963428 AGCATCGAGGACAAGTAAACT 57.037 42.857 0.00 0.00 0.00 2.66
2577 4471 3.851098 AGCATCGAGGACAAGTAAACTC 58.149 45.455 0.00 0.00 0.00 3.01
2578 4472 3.258372 AGCATCGAGGACAAGTAAACTCA 59.742 43.478 0.00 0.00 0.00 3.41
2579 4473 3.368236 GCATCGAGGACAAGTAAACTCAC 59.632 47.826 0.00 0.00 0.00 3.51
2580 4474 4.810790 CATCGAGGACAAGTAAACTCACT 58.189 43.478 0.00 0.00 0.00 3.41
2581 4475 5.621555 GCATCGAGGACAAGTAAACTCACTA 60.622 44.000 0.00 0.00 0.00 2.74
2582 4476 5.624344 TCGAGGACAAGTAAACTCACTAG 57.376 43.478 0.00 0.00 0.00 2.57
2583 4477 4.458295 TCGAGGACAAGTAAACTCACTAGG 59.542 45.833 0.00 0.00 0.00 3.02
2584 4478 4.217983 CGAGGACAAGTAAACTCACTAGGT 59.782 45.833 0.00 0.00 0.00 3.08
2585 4479 5.278858 CGAGGACAAGTAAACTCACTAGGTT 60.279 44.000 0.00 0.00 36.36 3.50
2586 4480 5.855045 AGGACAAGTAAACTCACTAGGTTG 58.145 41.667 0.00 0.00 33.61 3.77
2587 4481 4.451435 GGACAAGTAAACTCACTAGGTTGC 59.549 45.833 0.00 0.00 35.43 4.17
2588 4482 5.291905 ACAAGTAAACTCACTAGGTTGCT 57.708 39.130 0.00 0.00 46.06 3.91
2589 4483 5.298347 ACAAGTAAACTCACTAGGTTGCTC 58.702 41.667 0.00 0.00 43.67 4.26
2590 4484 5.070580 ACAAGTAAACTCACTAGGTTGCTCT 59.929 40.000 0.00 0.00 43.67 4.09
2591 4485 5.810080 AGTAAACTCACTAGGTTGCTCTT 57.190 39.130 0.00 0.00 40.95 2.85
2592 4486 5.542779 AGTAAACTCACTAGGTTGCTCTTG 58.457 41.667 0.00 0.00 40.95 3.02
2593 4487 3.409026 AACTCACTAGGTTGCTCTTGG 57.591 47.619 0.00 0.00 0.00 3.61
2594 4488 1.625818 ACTCACTAGGTTGCTCTTGGG 59.374 52.381 0.00 0.00 0.00 4.12
2595 4489 0.324943 TCACTAGGTTGCTCTTGGGC 59.675 55.000 0.00 0.00 0.00 5.36
2596 4490 0.036732 CACTAGGTTGCTCTTGGGCA 59.963 55.000 0.00 0.00 40.74 5.36
2597 4491 0.995024 ACTAGGTTGCTCTTGGGCAT 59.005 50.000 0.00 0.00 42.09 4.40
2598 4492 1.340405 ACTAGGTTGCTCTTGGGCATG 60.340 52.381 0.00 0.00 42.09 4.06
2599 4493 0.991146 TAGGTTGCTCTTGGGCATGA 59.009 50.000 0.00 0.00 42.09 3.07
2600 4494 0.333993 AGGTTGCTCTTGGGCATGAT 59.666 50.000 0.00 0.00 42.09 2.45
2601 4495 1.565759 AGGTTGCTCTTGGGCATGATA 59.434 47.619 0.00 0.00 42.09 2.15
2602 4496 2.176364 AGGTTGCTCTTGGGCATGATAT 59.824 45.455 0.00 0.00 42.09 1.63
2603 4497 2.961062 GGTTGCTCTTGGGCATGATATT 59.039 45.455 0.00 0.00 42.09 1.28
2604 4498 3.385755 GGTTGCTCTTGGGCATGATATTT 59.614 43.478 0.00 0.00 42.09 1.40
2605 4499 4.500375 GGTTGCTCTTGGGCATGATATTTC 60.500 45.833 0.00 0.00 42.09 2.17
2606 4500 3.900971 TGCTCTTGGGCATGATATTTCA 58.099 40.909 0.00 0.00 37.29 2.69
2607 4501 4.279982 TGCTCTTGGGCATGATATTTCAA 58.720 39.130 0.00 0.00 37.29 2.69
2608 4502 4.710865 TGCTCTTGGGCATGATATTTCAAA 59.289 37.500 0.00 0.00 37.29 2.69
2609 4503 5.187381 TGCTCTTGGGCATGATATTTCAAAA 59.813 36.000 0.00 0.00 37.29 2.44
2610 4504 6.126997 TGCTCTTGGGCATGATATTTCAAAAT 60.127 34.615 0.00 0.00 37.29 1.82
2611 4505 7.069702 TGCTCTTGGGCATGATATTTCAAAATA 59.930 33.333 0.00 0.00 37.29 1.40
2612 4506 8.092687 GCTCTTGGGCATGATATTTCAAAATAT 58.907 33.333 7.53 7.53 42.61 1.28
2613 4507 9.991906 CTCTTGGGCATGATATTTCAAAATATT 57.008 29.630 8.88 0.00 40.63 1.28
2638 4532 5.975410 TTTTTGGATTTGTAAAGGTTGCG 57.025 34.783 0.00 0.00 0.00 4.85
2639 4533 3.651803 TTGGATTTGTAAAGGTTGCGG 57.348 42.857 0.00 0.00 0.00 5.69
2640 4534 2.865079 TGGATTTGTAAAGGTTGCGGA 58.135 42.857 0.00 0.00 0.00 5.54
2641 4535 3.426615 TGGATTTGTAAAGGTTGCGGAT 58.573 40.909 0.00 0.00 0.00 4.18
2642 4536 4.590918 TGGATTTGTAAAGGTTGCGGATA 58.409 39.130 0.00 0.00 0.00 2.59
2643 4537 5.010933 TGGATTTGTAAAGGTTGCGGATAA 58.989 37.500 0.00 0.00 0.00 1.75
2644 4538 5.106078 TGGATTTGTAAAGGTTGCGGATAAC 60.106 40.000 0.00 0.00 0.00 1.89
2660 4554 3.314331 ACCAGCCGGTGAGACCTG 61.314 66.667 1.90 0.00 46.79 4.00
2661 4555 2.997315 CCAGCCGGTGAGACCTGA 60.997 66.667 1.90 0.00 35.66 3.86
2662 4556 2.362369 CCAGCCGGTGAGACCTGAT 61.362 63.158 1.90 0.00 35.66 2.90
2693 4587 8.630054 ATTACCACAGTACTTTTCTAATGCAA 57.370 30.769 0.00 0.00 0.00 4.08
2695 4589 7.524717 ACCACAGTACTTTTCTAATGCAATT 57.475 32.000 0.00 0.00 41.28 2.32
2697 4591 7.867403 ACCACAGTACTTTTCTAATGCAATTTG 59.133 33.333 0.00 0.00 37.87 2.32
2698 4592 7.867403 CCACAGTACTTTTCTAATGCAATTTGT 59.133 33.333 0.00 0.00 37.87 2.83
2715 4609 8.997323 TGCAATTTGTAAATTTTACCAATCTGG 58.003 29.630 15.19 10.83 38.86 3.86
2770 4664 3.084039 TCAGGATTAAACTGCTTGCTGG 58.916 45.455 5.83 0.00 35.94 4.85
2788 4682 3.487544 GCTGGTTAATTCGCCTCATGTTC 60.488 47.826 0.00 0.00 0.00 3.18
2847 4741 4.161942 TCATTTGATTTTGTATGCAGGGGG 59.838 41.667 0.00 0.00 0.00 5.40
2915 4809 5.859205 ATTCCTGACAGTTTTTCTTGCTT 57.141 34.783 0.93 0.00 0.00 3.91
2965 4859 9.262358 CTAGCAGTTCTAGGTAATTTCATAACC 57.738 37.037 0.00 0.00 40.85 2.85
2966 4860 7.862675 AGCAGTTCTAGGTAATTTCATAACCT 58.137 34.615 2.51 2.51 45.53 3.50
2967 4861 8.989131 AGCAGTTCTAGGTAATTTCATAACCTA 58.011 33.333 4.40 4.40 41.86 3.08
2968 4862 9.043079 GCAGTTCTAGGTAATTTCATAACCTAC 57.957 37.037 0.68 0.00 41.86 3.18
2969 4863 9.543783 CAGTTCTAGGTAATTTCATAACCTACC 57.456 37.037 0.68 0.00 41.86 3.18
2970 4864 9.503369 AGTTCTAGGTAATTTCATAACCTACCT 57.497 33.333 4.61 4.61 41.86 3.08
2971 4865 9.761504 GTTCTAGGTAATTTCATAACCTACCTC 57.238 37.037 2.45 0.00 41.86 3.85
2972 4866 9.725206 TTCTAGGTAATTTCATAACCTACCTCT 57.275 33.333 2.45 0.00 41.86 3.69
2973 4867 9.725206 TCTAGGTAATTTCATAACCTACCTCTT 57.275 33.333 2.45 0.00 41.86 2.85
2974 4868 9.765795 CTAGGTAATTTCATAACCTACCTCTTG 57.234 37.037 2.45 0.00 41.86 3.02
2975 4869 7.574607 AGGTAATTTCATAACCTACCTCTTGG 58.425 38.462 0.00 0.00 41.86 3.61
2977 4871 8.488668 GGTAATTTCATAACCTACCTCTTGGTA 58.511 37.037 0.00 0.00 46.43 3.25
2998 4892 5.690857 GGTAAGTCACCTATCTACGAAATGC 59.309 44.000 0.00 0.00 44.79 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 4.855298 TCTCTCGTAAAATCCCCCAAAT 57.145 40.909 0.00 0.00 0.00 2.32
15 17 3.135895 GGATCTCTCGTAAAATCCCCCAA 59.864 47.826 0.00 0.00 33.06 4.12
16 18 2.704065 GGATCTCTCGTAAAATCCCCCA 59.296 50.000 0.00 0.00 33.06 4.96
20 22 4.127907 GGTTGGGATCTCTCGTAAAATCC 58.872 47.826 0.00 0.00 37.53 3.01
21 23 4.127907 GGGTTGGGATCTCTCGTAAAATC 58.872 47.826 0.00 0.00 0.00 2.17
62 64 0.105039 GTGAATCCTCGGAGGCGATT 59.895 55.000 19.48 14.20 34.61 3.34
124 127 4.501071 GGGCTAGTTCGAGTAATTGTTGA 58.499 43.478 0.00 0.00 0.00 3.18
197 200 3.269381 TGGTAGAAATTGGGCAGATCCTT 59.731 43.478 0.00 0.00 34.39 3.36
226 229 4.692216 GCTAGCTACCCTAAGAACCCTAGT 60.692 50.000 7.70 0.00 0.00 2.57
237 240 5.322754 CCAGTGTATTAGCTAGCTACCCTA 58.677 45.833 24.09 10.12 0.00 3.53
252 255 2.929301 TCCCCTTTTCTCCCAGTGTAT 58.071 47.619 0.00 0.00 0.00 2.29
259 262 4.047627 TCATCTTTTCCCCTTTTCTCCC 57.952 45.455 0.00 0.00 0.00 4.30
268 271 1.312815 CCGCAGATCATCTTTTCCCC 58.687 55.000 0.00 0.00 0.00 4.81
272 275 1.293924 CGAGCCGCAGATCATCTTTT 58.706 50.000 0.00 0.00 0.00 2.27
310 313 1.986757 ATCGCCACCTGCTCTCTGT 60.987 57.895 0.00 0.00 38.05 3.41
312 315 1.683707 TCATCGCCACCTGCTCTCT 60.684 57.895 0.00 0.00 38.05 3.10
314 317 1.548357 AAGTCATCGCCACCTGCTCT 61.548 55.000 0.00 0.00 38.05 4.09
365 368 3.390521 CCGCCACCAGCCTGACTA 61.391 66.667 0.00 0.00 38.78 2.59
408 411 0.679960 TGAAGATCGACGGCTCTCCA 60.680 55.000 0.00 0.00 0.00 3.86
436 440 0.837272 ATCGGACGGTTGGGATCAAT 59.163 50.000 0.00 0.00 35.10 2.57
461 465 0.394565 ACGAAGCAGAGTTCAGCCTT 59.605 50.000 0.00 0.00 0.00 4.35
475 479 0.861837 GAACACCTGCACTGACGAAG 59.138 55.000 0.00 0.00 0.00 3.79
479 483 1.599542 GAACAGAACACCTGCACTGAC 59.400 52.381 6.74 0.00 46.81 3.51
557 561 4.511443 GTGTCGCATGCTCGCAGC 62.511 66.667 17.13 1.70 42.82 5.25
558 562 2.812609 AGTGTCGCATGCTCGCAG 60.813 61.111 17.13 0.00 0.00 5.18
559 563 3.113979 CAGTGTCGCATGCTCGCA 61.114 61.111 17.13 8.79 0.00 5.10
560 564 4.511443 GCAGTGTCGCATGCTCGC 62.511 66.667 17.13 14.67 39.38 5.03
564 568 2.482374 GGAAGCAGTGTCGCATGC 59.518 61.111 7.91 7.91 42.87 4.06
565 569 2.401766 GGGGAAGCAGTGTCGCATG 61.402 63.158 0.00 0.00 0.00 4.06
566 570 2.045926 GGGGAAGCAGTGTCGCAT 60.046 61.111 0.00 0.00 0.00 4.73
567 571 2.894257 ATGGGGAAGCAGTGTCGCA 61.894 57.895 0.00 0.00 0.00 5.10
568 572 2.045926 ATGGGGAAGCAGTGTCGC 60.046 61.111 0.00 0.00 0.00 5.19
569 573 1.746615 CCATGGGGAAGCAGTGTCG 60.747 63.158 2.85 0.00 35.59 4.35
570 574 2.048603 GCCATGGGGAAGCAGTGTC 61.049 63.158 15.13 0.00 35.59 3.67
571 575 2.036256 GCCATGGGGAAGCAGTGT 59.964 61.111 15.13 0.00 35.59 3.55
572 576 3.136123 CGCCATGGGGAAGCAGTG 61.136 66.667 23.98 0.00 35.59 3.66
573 577 3.329889 TCGCCATGGGGAAGCAGT 61.330 61.111 27.91 0.00 35.59 4.40
574 578 2.825836 GTCGCCATGGGGAAGCAG 60.826 66.667 31.10 4.97 38.78 4.24
575 579 3.645660 TGTCGCCATGGGGAAGCA 61.646 61.111 31.10 22.74 38.78 3.91
576 580 3.134127 GTGTCGCCATGGGGAAGC 61.134 66.667 31.10 22.04 38.78 3.86
577 581 2.819595 CGTGTCGCCATGGGGAAG 60.820 66.667 31.10 21.03 38.78 3.46
578 582 4.402528 CCGTGTCGCCATGGGGAA 62.403 66.667 31.10 18.74 43.05 3.97
589 593 3.712881 GCAGCCAACGACCGTGTC 61.713 66.667 0.00 0.00 0.00 3.67
590 594 4.539083 TGCAGCCAACGACCGTGT 62.539 61.111 0.00 0.00 0.00 4.49
591 595 3.716006 CTGCAGCCAACGACCGTG 61.716 66.667 0.00 0.00 0.00 4.94
592 596 3.750373 AACTGCAGCCAACGACCGT 62.750 57.895 15.27 0.00 0.00 4.83
593 597 2.972505 AACTGCAGCCAACGACCG 60.973 61.111 15.27 0.00 0.00 4.79
594 598 2.639286 CAACTGCAGCCAACGACC 59.361 61.111 15.27 0.00 0.00 4.79
595 599 2.050985 GCAACTGCAGCCAACGAC 60.051 61.111 15.27 0.00 41.59 4.34
596 600 3.648982 CGCAACTGCAGCCAACGA 61.649 61.111 15.27 0.00 42.21 3.85
597 601 2.969806 ATCGCAACTGCAGCCAACG 61.970 57.895 15.27 12.95 42.21 4.10
598 602 1.443194 CATCGCAACTGCAGCCAAC 60.443 57.895 15.27 0.00 42.21 3.77
599 603 1.898094 ACATCGCAACTGCAGCCAA 60.898 52.632 15.27 0.00 42.21 4.52
600 604 2.281692 ACATCGCAACTGCAGCCA 60.282 55.556 15.27 0.00 42.21 4.75
601 605 2.177531 CACATCGCAACTGCAGCC 59.822 61.111 15.27 1.17 42.21 4.85
602 606 1.134075 CTCACATCGCAACTGCAGC 59.866 57.895 15.27 0.00 42.21 5.25
603 607 1.128136 CTTCTCACATCGCAACTGCAG 59.872 52.381 13.48 13.48 42.21 4.41
604 608 1.150827 CTTCTCACATCGCAACTGCA 58.849 50.000 2.12 0.00 42.21 4.41
605 609 0.445436 CCTTCTCACATCGCAACTGC 59.555 55.000 0.00 0.00 37.78 4.40
606 610 1.728971 GTCCTTCTCACATCGCAACTG 59.271 52.381 0.00 0.00 0.00 3.16
607 611 1.338200 GGTCCTTCTCACATCGCAACT 60.338 52.381 0.00 0.00 0.00 3.16
608 612 1.079503 GGTCCTTCTCACATCGCAAC 58.920 55.000 0.00 0.00 0.00 4.17
609 613 0.036388 GGGTCCTTCTCACATCGCAA 60.036 55.000 0.00 0.00 0.00 4.85
610 614 1.596934 GGGTCCTTCTCACATCGCA 59.403 57.895 0.00 0.00 0.00 5.10
611 615 1.519455 CGGGTCCTTCTCACATCGC 60.519 63.158 0.00 0.00 0.00 4.58
612 616 0.179134 GACGGGTCCTTCTCACATCG 60.179 60.000 0.00 0.00 0.00 3.84
613 617 1.187087 AGACGGGTCCTTCTCACATC 58.813 55.000 0.00 0.00 0.00 3.06
614 618 1.645710 AAGACGGGTCCTTCTCACAT 58.354 50.000 0.00 0.00 0.00 3.21
615 619 2.168496 CTAAGACGGGTCCTTCTCACA 58.832 52.381 0.00 0.00 0.00 3.58
616 620 1.135053 GCTAAGACGGGTCCTTCTCAC 60.135 57.143 0.00 0.00 0.00 3.51
617 621 1.183549 GCTAAGACGGGTCCTTCTCA 58.816 55.000 0.00 0.00 0.00 3.27
618 622 0.100861 CGCTAAGACGGGTCCTTCTC 59.899 60.000 0.00 0.00 0.00 2.87
619 623 0.611340 ACGCTAAGACGGGTCCTTCT 60.611 55.000 0.00 0.00 37.37 2.85
620 624 0.245813 AACGCTAAGACGGGTCCTTC 59.754 55.000 0.00 0.00 37.37 3.46
621 625 0.037605 CAACGCTAAGACGGGTCCTT 60.038 55.000 0.00 0.00 37.37 3.36
622 626 0.896940 TCAACGCTAAGACGGGTCCT 60.897 55.000 0.00 0.00 37.37 3.85
623 627 0.735287 GTCAACGCTAAGACGGGTCC 60.735 60.000 0.00 0.00 37.37 4.46
624 628 0.735287 GGTCAACGCTAAGACGGGTC 60.735 60.000 0.00 0.00 37.37 4.46
625 629 1.291272 GGTCAACGCTAAGACGGGT 59.709 57.895 0.00 0.00 37.37 5.28
626 630 1.804326 CGGTCAACGCTAAGACGGG 60.804 63.158 0.00 0.00 37.37 5.28
627 631 0.179145 ATCGGTCAACGCTAAGACGG 60.179 55.000 0.00 0.00 43.86 4.79
628 632 1.189403 GATCGGTCAACGCTAAGACG 58.811 55.000 0.00 0.00 43.86 4.18
629 633 1.135199 TGGATCGGTCAACGCTAAGAC 60.135 52.381 0.00 0.00 43.86 3.01
630 634 1.179152 TGGATCGGTCAACGCTAAGA 58.821 50.000 0.00 0.00 43.86 2.10
631 635 1.659098 GTTGGATCGGTCAACGCTAAG 59.341 52.381 0.00 0.00 43.86 2.18
632 636 1.001068 TGTTGGATCGGTCAACGCTAA 59.999 47.619 0.00 0.00 45.22 3.09
633 637 0.604073 TGTTGGATCGGTCAACGCTA 59.396 50.000 0.00 0.00 45.22 4.26
634 638 0.670546 CTGTTGGATCGGTCAACGCT 60.671 55.000 0.00 0.00 45.22 5.07
635 639 1.787847 CTGTTGGATCGGTCAACGC 59.212 57.895 0.00 0.00 45.22 4.84
636 640 0.670546 AGCTGTTGGATCGGTCAACG 60.671 55.000 0.00 2.00 45.22 4.10
637 641 1.079503 GAGCTGTTGGATCGGTCAAC 58.920 55.000 0.00 3.89 43.29 3.18
638 642 0.976641 AGAGCTGTTGGATCGGTCAA 59.023 50.000 0.00 0.00 35.20 3.18
639 643 1.847328 TAGAGCTGTTGGATCGGTCA 58.153 50.000 0.00 0.00 35.20 4.02
640 644 2.482142 CCTTAGAGCTGTTGGATCGGTC 60.482 54.545 0.00 0.00 35.20 4.79
641 645 1.482593 CCTTAGAGCTGTTGGATCGGT 59.517 52.381 0.00 0.00 35.20 4.69
642 646 1.202580 CCCTTAGAGCTGTTGGATCGG 60.203 57.143 0.00 0.00 35.20 4.18
643 647 1.202580 CCCCTTAGAGCTGTTGGATCG 60.203 57.143 0.00 0.00 35.20 3.69
644 648 2.119495 TCCCCTTAGAGCTGTTGGATC 58.881 52.381 0.00 0.00 0.00 3.36
645 649 2.270434 TCCCCTTAGAGCTGTTGGAT 57.730 50.000 0.00 0.00 0.00 3.41
646 650 1.839994 CATCCCCTTAGAGCTGTTGGA 59.160 52.381 0.00 0.00 0.00 3.53
647 651 1.133976 CCATCCCCTTAGAGCTGTTGG 60.134 57.143 0.00 0.00 0.00 3.77
648 652 1.839994 TCCATCCCCTTAGAGCTGTTG 59.160 52.381 0.00 0.00 0.00 3.33
649 653 2.270434 TCCATCCCCTTAGAGCTGTT 57.730 50.000 0.00 0.00 0.00 3.16
650 654 2.334023 GATCCATCCCCTTAGAGCTGT 58.666 52.381 0.00 0.00 0.00 4.40
651 655 1.627834 GGATCCATCCCCTTAGAGCTG 59.372 57.143 6.95 0.00 41.20 4.24
652 656 1.224120 TGGATCCATCCCCTTAGAGCT 59.776 52.381 11.44 0.00 46.59 4.09
653 657 1.734655 TGGATCCATCCCCTTAGAGC 58.265 55.000 11.44 0.00 46.59 4.09
654 658 2.037772 CGTTGGATCCATCCCCTTAGAG 59.962 54.545 17.06 0.00 46.59 2.43
655 659 2.047061 CGTTGGATCCATCCCCTTAGA 58.953 52.381 17.06 0.00 46.59 2.10
656 660 1.072331 CCGTTGGATCCATCCCCTTAG 59.928 57.143 17.06 0.82 46.59 2.18
657 661 1.136828 CCGTTGGATCCATCCCCTTA 58.863 55.000 17.06 0.00 46.59 2.69
658 662 1.922821 CCGTTGGATCCATCCCCTT 59.077 57.895 17.06 0.00 46.59 3.95
659 663 2.757124 GCCGTTGGATCCATCCCCT 61.757 63.158 17.06 0.00 46.59 4.79
660 664 2.203351 GCCGTTGGATCCATCCCC 60.203 66.667 17.06 3.54 46.59 4.81
661 665 2.203351 GGCCGTTGGATCCATCCC 60.203 66.667 17.06 8.72 46.59 3.85
663 667 2.189499 GCAGGCCGTTGGATCCATC 61.189 63.158 17.06 14.27 0.00 3.51
664 668 2.124151 GCAGGCCGTTGGATCCAT 60.124 61.111 17.06 0.00 0.00 3.41
665 669 4.776322 CGCAGGCCGTTGGATCCA 62.776 66.667 11.44 11.44 0.00 3.41
666 670 4.467084 TCGCAGGCCGTTGGATCC 62.467 66.667 4.20 4.20 38.35 3.36
667 671 3.195698 GTCGCAGGCCGTTGGATC 61.196 66.667 0.00 0.00 38.35 3.36
676 680 3.665675 AATCAGTCGGGTCGCAGGC 62.666 63.158 0.00 0.00 0.00 4.85
677 681 1.079127 AAATCAGTCGGGTCGCAGG 60.079 57.895 0.00 0.00 0.00 4.85
678 682 1.084370 GGAAATCAGTCGGGTCGCAG 61.084 60.000 0.00 0.00 0.00 5.18
679 683 1.079405 GGAAATCAGTCGGGTCGCA 60.079 57.895 0.00 0.00 0.00 5.10
680 684 0.806492 GAGGAAATCAGTCGGGTCGC 60.806 60.000 0.00 0.00 0.00 5.19
681 685 0.525668 CGAGGAAATCAGTCGGGTCG 60.526 60.000 0.00 0.00 0.00 4.79
682 686 0.815734 TCGAGGAAATCAGTCGGGTC 59.184 55.000 5.05 0.00 34.43 4.46
683 687 0.818296 CTCGAGGAAATCAGTCGGGT 59.182 55.000 3.91 0.00 34.43 5.28
684 688 1.103803 TCTCGAGGAAATCAGTCGGG 58.896 55.000 13.56 2.34 35.43 5.14
685 689 2.941453 TTCTCGAGGAAATCAGTCGG 57.059 50.000 13.56 0.00 34.43 4.79
693 697 2.561419 ACCGACTGATTTCTCGAGGAAA 59.439 45.455 10.91 10.91 46.33 3.13
694 698 2.168496 ACCGACTGATTTCTCGAGGAA 58.832 47.619 9.01 9.01 31.24 3.36
695 699 1.835494 ACCGACTGATTTCTCGAGGA 58.165 50.000 13.56 0.00 31.24 3.71
696 700 2.094700 TCAACCGACTGATTTCTCGAGG 60.095 50.000 13.56 0.00 31.24 4.63
697 701 3.217599 TCAACCGACTGATTTCTCGAG 57.782 47.619 5.93 5.93 31.24 4.04
698 702 3.868757 ATCAACCGACTGATTTCTCGA 57.131 42.857 0.00 0.00 31.84 4.04
699 703 3.000674 CGAATCAACCGACTGATTTCTCG 60.001 47.826 11.67 8.37 44.29 4.04
700 704 3.927142 ACGAATCAACCGACTGATTTCTC 59.073 43.478 11.67 1.83 44.29 2.87
701 705 3.926616 ACGAATCAACCGACTGATTTCT 58.073 40.909 11.67 0.92 44.29 2.52
702 706 4.259850 GCTACGAATCAACCGACTGATTTC 60.260 45.833 11.67 6.28 44.29 2.17
703 707 3.617263 GCTACGAATCAACCGACTGATTT 59.383 43.478 11.67 2.59 44.29 2.17
704 708 3.187700 GCTACGAATCAACCGACTGATT 58.812 45.455 10.58 10.58 46.38 2.57
705 709 2.165641 TGCTACGAATCAACCGACTGAT 59.834 45.455 0.00 0.00 37.66 2.90
706 710 1.542472 TGCTACGAATCAACCGACTGA 59.458 47.619 0.00 0.00 0.00 3.41
707 711 1.920574 CTGCTACGAATCAACCGACTG 59.079 52.381 0.00 0.00 0.00 3.51
708 712 1.736032 GCTGCTACGAATCAACCGACT 60.736 52.381 0.00 0.00 0.00 4.18
709 713 0.645868 GCTGCTACGAATCAACCGAC 59.354 55.000 0.00 0.00 0.00 4.79
710 714 0.459585 GGCTGCTACGAATCAACCGA 60.460 55.000 0.00 0.00 0.00 4.69
711 715 1.752501 CGGCTGCTACGAATCAACCG 61.753 60.000 0.00 0.00 35.93 4.44
712 716 2.006772 CGGCTGCTACGAATCAACC 58.993 57.895 0.00 0.00 0.00 3.77
713 717 1.348594 GCGGCTGCTACGAATCAAC 59.651 57.895 11.21 0.00 38.39 3.18
714 718 1.813753 GGCGGCTGCTACGAATCAA 60.814 57.895 18.85 0.00 42.25 2.57
715 719 2.202878 GGCGGCTGCTACGAATCA 60.203 61.111 18.85 0.00 42.25 2.57
716 720 0.319555 TATGGCGGCTGCTACGAATC 60.320 55.000 18.85 0.00 42.25 2.52
717 721 0.105964 TTATGGCGGCTGCTACGAAT 59.894 50.000 18.85 6.47 42.25 3.34
718 722 0.108089 TTTATGGCGGCTGCTACGAA 60.108 50.000 18.85 6.72 42.25 3.85
719 723 0.108089 TTTTATGGCGGCTGCTACGA 60.108 50.000 18.85 0.00 42.25 3.43
720 724 0.730265 TTTTTATGGCGGCTGCTACG 59.270 50.000 18.85 0.00 42.25 3.51
738 742 2.629617 CACAGTGCTGAATCCCCTTTTT 59.370 45.455 6.17 0.00 0.00 1.94
752 756 2.474816 ACTCTCTCGAAAACACAGTGC 58.525 47.619 0.00 0.00 0.00 4.40
808 816 2.025155 GATCGTGGTCAGCTCTCCTTA 58.975 52.381 5.46 0.00 0.00 2.69
816 824 1.590238 CGATTTCAGATCGTGGTCAGC 59.410 52.381 0.56 0.00 36.84 4.26
867 876 6.069615 ACAGGGGATTTGGGCTGTATATATAC 60.070 42.308 14.86 14.86 0.00 1.47
873 1374 1.215423 GACAGGGGATTTGGGCTGTAT 59.785 52.381 0.00 0.00 0.00 2.29
874 1375 0.623723 GACAGGGGATTTGGGCTGTA 59.376 55.000 0.00 0.00 0.00 2.74
934 1438 1.368641 CTGATCGCCGTGGAATTTGA 58.631 50.000 0.00 0.00 0.00 2.69
991 1521 4.530857 GCTGGCCATAGGACGCGT 62.531 66.667 13.85 13.85 29.56 6.01
1038 1568 2.911926 GCAAACCTCCTGGGAGCCT 61.912 63.158 10.92 0.00 40.69 4.58
1093 1623 3.308402 GGAAGTGGAACCCTGATCAATCA 60.308 47.826 0.00 0.00 37.80 2.57
1101 1631 0.036875 GGAGTGGAAGTGGAACCCTG 59.963 60.000 0.00 0.00 37.80 4.45
1121 1651 2.175035 CTCCCGTGGCGAAACCCTTA 62.175 60.000 0.00 0.00 37.83 2.69
1123 1653 4.016706 CTCCCGTGGCGAAACCCT 62.017 66.667 0.00 0.00 37.83 4.34
1126 1656 0.601841 TCTTTCTCCCGTGGCGAAAC 60.602 55.000 4.58 0.00 0.00 2.78
1170 1701 5.046950 AGGGTTTGGCAAATTATTAAGCGAA 60.047 36.000 16.74 0.00 0.00 4.70
1271 2859 0.899019 TGCTGTATGGCGACTGGTAA 59.101 50.000 0.00 0.00 34.52 2.85
1280 2868 2.016961 CGGTGTCATGCTGTATGGC 58.983 57.895 3.23 3.23 41.84 4.40
1355 2951 3.547746 TGCGGGGTGATTAATTTCCTAC 58.452 45.455 8.89 3.86 0.00 3.18
1360 2956 5.799213 TCAAATTTGCGGGGTGATTAATTT 58.201 33.333 13.54 0.00 0.00 1.82
1361 2957 5.413309 TCAAATTTGCGGGGTGATTAATT 57.587 34.783 13.54 0.00 0.00 1.40
1363 2959 6.531503 TTATCAAATTTGCGGGGTGATTAA 57.468 33.333 13.54 0.00 31.58 1.40
1364 2960 6.531503 TTTATCAAATTTGCGGGGTGATTA 57.468 33.333 13.54 0.00 31.58 1.75
1365 2961 5.413309 TTTATCAAATTTGCGGGGTGATT 57.587 34.783 13.54 0.00 31.58 2.57
1366 2962 5.612725 ATTTATCAAATTTGCGGGGTGAT 57.387 34.783 13.54 2.73 33.63 3.06
1504 3105 3.838244 ATTTATAGCCCAGCGTGAAGA 57.162 42.857 0.00 0.00 0.00 2.87
1529 3130 6.128418 GCCAGAGTCAGAAACTGATTTTAGTC 60.128 42.308 4.79 0.00 42.73 2.59
1622 3223 0.457851 CGTCTTCTAGCTGGTCTGGG 59.542 60.000 0.00 0.00 0.00 4.45
1659 3260 1.815421 CCGTCATCCTCCGGCAAAG 60.815 63.158 0.00 0.00 37.43 2.77
1679 3280 1.388065 CGCCGGATCTCTGTCCTTCT 61.388 60.000 5.05 0.00 36.07 2.85
1771 3372 1.076332 GGAGGACACATGTAACGCAC 58.924 55.000 0.00 0.00 0.00 5.34
1776 3377 3.137544 ACAAACCAGGAGGACACATGTAA 59.862 43.478 0.00 0.00 38.69 2.41
1797 3398 7.730364 AATATATCACCTCATCCGACAAAAC 57.270 36.000 0.00 0.00 0.00 2.43
1798 3399 8.425703 TGTAATATATCACCTCATCCGACAAAA 58.574 33.333 0.00 0.00 0.00 2.44
1803 3404 9.343539 CTCTATGTAATATATCACCTCATCCGA 57.656 37.037 0.00 0.00 0.00 4.55
1804 3405 8.572185 CCTCTATGTAATATATCACCTCATCCG 58.428 40.741 0.00 0.00 0.00 4.18
1821 3423 7.369551 ACGTTGATTAATTCCCCTCTATGTA 57.630 36.000 0.00 0.00 0.00 2.29
1844 3447 7.434013 CCAGAAACACCTACAATACAACAAAAC 59.566 37.037 0.00 0.00 0.00 2.43
1853 3456 5.530915 GCATATGCCAGAAACACCTACAATA 59.469 40.000 17.26 0.00 34.31 1.90
1887 3490 3.005367 TCGTCTTGGAATATGCTGCGATA 59.995 43.478 0.00 0.00 0.00 2.92
1889 3492 1.136110 TCGTCTTGGAATATGCTGCGA 59.864 47.619 0.00 0.00 0.00 5.10
1962 3565 1.311859 CAGCAGCAAACTTGTCCTCA 58.688 50.000 0.00 0.00 0.00 3.86
2061 3664 6.693315 ATGGACAAATACGGGATTTTACAG 57.307 37.500 0.00 0.00 35.45 2.74
2062 3665 7.110810 TGTATGGACAAATACGGGATTTTACA 58.889 34.615 0.00 0.00 35.45 2.41
2063 3666 7.556733 TGTATGGACAAATACGGGATTTTAC 57.443 36.000 0.00 0.00 35.45 2.01
2064 3667 8.754991 AATGTATGGACAAATACGGGATTTTA 57.245 30.769 0.00 0.00 39.59 1.52
2083 3879 8.465999 TCATTCCGACAAAAATGCTAAATGTAT 58.534 29.630 0.00 0.00 33.76 2.29
2087 3883 9.301153 GTAATCATTCCGACAAAAATGCTAAAT 57.699 29.630 0.00 0.00 33.76 1.40
2088 3884 7.757624 GGTAATCATTCCGACAAAAATGCTAAA 59.242 33.333 0.00 0.00 33.76 1.85
2102 3898 4.991056 CAGTGTATCTGGGTAATCATTCCG 59.009 45.833 0.00 0.00 40.23 4.30
2116 3912 9.220767 GAACTTCTTTCAATTACCAGTGTATCT 57.779 33.333 0.00 0.00 33.94 1.98
2117 3913 8.999431 TGAACTTCTTTCAATTACCAGTGTATC 58.001 33.333 0.00 0.00 41.51 2.24
2118 3914 8.918202 TGAACTTCTTTCAATTACCAGTGTAT 57.082 30.769 0.00 0.00 41.51 2.29
2136 3932 9.350357 TGTTATCTAACTGTACGATTGAACTTC 57.650 33.333 0.00 0.00 37.12 3.01
2150 3946 8.301730 TCAACGTTAGGTTTGTTATCTAACTG 57.698 34.615 0.00 0.00 40.11 3.16
2159 3955 6.518493 TCTACAGATCAACGTTAGGTTTGTT 58.482 36.000 0.00 0.00 36.49 2.83
2160 3956 6.092955 TCTACAGATCAACGTTAGGTTTGT 57.907 37.500 0.00 6.46 36.49 2.83
2197 3993 6.654582 TGAGCAACACAGTCATAATACATTGT 59.345 34.615 0.00 0.00 0.00 2.71
2233 4029 7.173907 GGATTATACACATTTGAGTCCCTGATG 59.826 40.741 0.00 0.00 0.00 3.07
2254 4050 8.908786 CTTGCTTAGGACATTCTAATGGATTA 57.091 34.615 7.56 0.00 40.70 1.75
2278 4074 3.168292 CTGAATTTCTGGAAAAGGCCCT 58.832 45.455 0.00 0.00 33.56 5.19
2281 4077 2.354103 GCCCTGAATTTCTGGAAAAGGC 60.354 50.000 20.47 12.41 37.65 4.35
2289 4085 1.027357 CATCCCGCCCTGAATTTCTG 58.973 55.000 0.00 0.00 0.00 3.02
2480 4374 7.453980 AAAATGTATTACTTGCGCATGAATG 57.546 32.000 27.85 11.08 0.00 2.67
2483 4377 8.972262 TTTTAAAATGTATTACTTGCGCATGA 57.028 26.923 27.85 5.89 0.00 3.07
2484 4378 9.674208 CTTTTTAAAATGTATTACTTGCGCATG 57.326 29.630 20.60 20.60 0.00 4.06
2485 4379 9.418045 ACTTTTTAAAATGTATTACTTGCGCAT 57.582 25.926 12.75 0.00 0.00 4.73
2526 4420 9.768662 TTAGAAGTAGGACGAAATTAAGTTTGT 57.231 29.630 8.24 8.24 0.00 2.83
2540 4434 4.820716 TCGATGCTAGGTTAGAAGTAGGAC 59.179 45.833 0.00 0.00 0.00 3.85
2562 4456 5.725325 ACCTAGTGAGTTTACTTGTCCTC 57.275 43.478 0.00 0.00 32.19 3.71
2569 4463 5.511545 CCAAGAGCAACCTAGTGAGTTTACT 60.512 44.000 0.00 0.00 34.71 2.24
2570 4464 4.691216 CCAAGAGCAACCTAGTGAGTTTAC 59.309 45.833 0.00 0.00 0.00 2.01
2571 4465 4.262894 CCCAAGAGCAACCTAGTGAGTTTA 60.263 45.833 0.00 0.00 0.00 2.01
2572 4466 3.496870 CCCAAGAGCAACCTAGTGAGTTT 60.497 47.826 0.00 0.00 0.00 2.66
2573 4467 2.039084 CCCAAGAGCAACCTAGTGAGTT 59.961 50.000 0.00 0.00 0.00 3.01
2574 4468 1.625818 CCCAAGAGCAACCTAGTGAGT 59.374 52.381 0.00 0.00 0.00 3.41
2575 4469 1.677217 GCCCAAGAGCAACCTAGTGAG 60.677 57.143 0.00 0.00 0.00 3.51
2576 4470 0.324943 GCCCAAGAGCAACCTAGTGA 59.675 55.000 0.00 0.00 0.00 3.41
2577 4471 0.036732 TGCCCAAGAGCAACCTAGTG 59.963 55.000 0.00 0.00 40.56 2.74
2578 4472 2.463441 TGCCCAAGAGCAACCTAGT 58.537 52.632 0.00 0.00 40.56 2.57
2586 4480 4.924305 TTGAAATATCATGCCCAAGAGC 57.076 40.909 0.00 0.00 34.96 4.09
2587 4481 9.991906 AATATTTTGAAATATCATGCCCAAGAG 57.008 29.630 8.88 0.00 39.89 2.85
2616 4510 4.811557 CCGCAACCTTTACAAATCCAAAAA 59.188 37.500 0.00 0.00 0.00 1.94
2617 4511 4.099573 TCCGCAACCTTTACAAATCCAAAA 59.900 37.500 0.00 0.00 0.00 2.44
2618 4512 3.637229 TCCGCAACCTTTACAAATCCAAA 59.363 39.130 0.00 0.00 0.00 3.28
2619 4513 3.223435 TCCGCAACCTTTACAAATCCAA 58.777 40.909 0.00 0.00 0.00 3.53
2620 4514 2.865079 TCCGCAACCTTTACAAATCCA 58.135 42.857 0.00 0.00 0.00 3.41
2621 4515 5.337554 GTTATCCGCAACCTTTACAAATCC 58.662 41.667 0.00 0.00 0.00 3.01
2622 4516 5.106078 TGGTTATCCGCAACCTTTACAAATC 60.106 40.000 11.57 0.00 46.85 2.17
2623 4517 4.767928 TGGTTATCCGCAACCTTTACAAAT 59.232 37.500 11.57 0.00 46.85 2.32
2624 4518 4.142790 TGGTTATCCGCAACCTTTACAAA 58.857 39.130 11.57 0.00 46.85 2.83
2625 4519 3.752665 TGGTTATCCGCAACCTTTACAA 58.247 40.909 11.57 0.00 46.85 2.41
2626 4520 3.340034 CTGGTTATCCGCAACCTTTACA 58.660 45.455 11.57 0.00 46.85 2.41
2627 4521 2.096980 GCTGGTTATCCGCAACCTTTAC 59.903 50.000 11.57 0.00 46.85 2.01
2628 4522 2.361789 GCTGGTTATCCGCAACCTTTA 58.638 47.619 11.57 0.00 46.85 1.85
2629 4523 1.173913 GCTGGTTATCCGCAACCTTT 58.826 50.000 11.57 0.00 46.85 3.11
2630 4524 0.679960 GGCTGGTTATCCGCAACCTT 60.680 55.000 11.57 0.00 46.85 3.50
2631 4525 1.077716 GGCTGGTTATCCGCAACCT 60.078 57.895 11.57 0.00 46.85 3.50
2632 4526 2.469516 CGGCTGGTTATCCGCAACC 61.470 63.158 5.20 5.20 46.90 3.77
2633 4527 2.469516 CCGGCTGGTTATCCGCAAC 61.470 63.158 2.29 0.00 44.01 4.17
2634 4528 2.124901 CCGGCTGGTTATCCGCAA 60.125 61.111 2.29 0.00 44.01 4.85
2644 4538 2.362369 ATCAGGTCTCACCGGCTGG 61.362 63.158 11.02 11.02 44.90 4.85
2645 4539 1.153489 CATCAGGTCTCACCGGCTG 60.153 63.158 0.00 0.00 44.90 4.85
2646 4540 2.362369 CCATCAGGTCTCACCGGCT 61.362 63.158 0.00 0.00 44.90 5.52
2647 4541 2.187946 CCATCAGGTCTCACCGGC 59.812 66.667 0.00 0.00 44.90 6.13
2673 4567 8.801715 ACAAATTGCATTAGAAAAGTACTGTG 57.198 30.769 0.00 0.00 0.00 3.66
2715 4609 5.177142 CAGTATTGCAGTCTCATATGCTCAC 59.823 44.000 0.00 0.00 42.98 3.51
2770 4664 5.106712 TGTGAAGAACATGAGGCGAATTAAC 60.107 40.000 0.00 0.00 32.36 2.01
2788 4682 6.744537 GCAAACTACTGCTATTTCATGTGAAG 59.255 38.462 0.00 0.00 39.34 3.02
2835 4729 1.891933 TGAATCTCCCCCTGCATACA 58.108 50.000 0.00 0.00 0.00 2.29
2880 4774 5.239525 ACTGTCAGGAATTAAACTCACTTGC 59.760 40.000 4.53 0.00 0.00 4.01
2915 4809 5.665360 GGAAATGGAAATAAAATGAGGGGGA 59.335 40.000 0.00 0.00 0.00 4.81
2968 4862 8.548627 TTCGTAGATAGGTGACTTACCAAGAGG 61.549 44.444 0.00 0.00 45.37 3.69
2969 4863 6.318144 TTCGTAGATAGGTGACTTACCAAGAG 59.682 42.308 0.00 0.00 45.37 2.85
2970 4864 6.182627 TTCGTAGATAGGTGACTTACCAAGA 58.817 40.000 0.00 0.00 45.37 3.02
2971 4865 6.446781 TTCGTAGATAGGTGACTTACCAAG 57.553 41.667 0.00 0.00 45.37 3.61
2972 4866 6.839124 TTTCGTAGATAGGTGACTTACCAA 57.161 37.500 0.00 0.00 45.37 3.67
2973 4867 6.682113 GCATTTCGTAGATAGGTGACTTACCA 60.682 42.308 0.00 0.00 45.37 3.25
2974 4868 5.690857 GCATTTCGTAGATAGGTGACTTACC 59.309 44.000 0.00 0.00 43.85 2.85
2975 4869 6.750775 GCATTTCGTAGATAGGTGACTTAC 57.249 41.667 0.00 0.00 43.67 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.