Multiple sequence alignment - TraesCS2B01G144100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G144100 chr2B 100.000 6051 0 0 1 6051 110413861 110407811 0.000000e+00 11175.0
1 TraesCS2B01G144100 chr2B 92.348 379 19 4 5683 6051 2119806 2120184 1.150000e-146 531.0
2 TraesCS2B01G144100 chr2B 91.316 380 23 6 5682 6051 59764623 59764244 1.500000e-140 510.0
3 TraesCS2B01G144100 chr2B 94.186 172 8 1 5480 5651 639288025 639288194 1.670000e-65 261.0
4 TraesCS2B01G144100 chr2B 89.706 68 3 4 5423 5488 225436404 225436339 3.890000e-12 84.2
5 TraesCS2B01G144100 chr2B 89.394 66 5 2 5414 5478 246575782 246575846 1.400000e-11 82.4
6 TraesCS2B01G144100 chr2A 93.918 4505 223 33 583 5072 71593756 71589288 0.000000e+00 6754.0
7 TraesCS2B01G144100 chr2A 97.516 161 4 0 5487 5647 700986074 700986234 5.970000e-70 276.0
8 TraesCS2B01G144100 chr2D 93.192 3966 194 36 1390 5328 73005509 73001593 0.000000e+00 5758.0
9 TraesCS2B01G144100 chr2D 87.577 1296 126 24 1 1291 73007395 73006130 0.000000e+00 1469.0
10 TraesCS2B01G144100 chr2D 90.244 164 11 4 5487 5647 631626391 631626552 6.150000e-50 209.0
11 TraesCS2B01G144100 chr2D 90.476 105 10 0 579 683 12911597 12911701 8.180000e-29 139.0
12 TraesCS2B01G144100 chr2D 100.000 36 0 0 1317 1352 73006120 73006085 3.910000e-07 67.6
13 TraesCS2B01G144100 chr2D 92.500 40 1 2 5646 5683 438252005 438252044 8.470000e-04 56.5
14 TraesCS2B01G144100 chr5A 93.386 378 15 4 5684 6051 525076868 525076491 8.860000e-153 551.0
15 TraesCS2B01G144100 chr5A 96.341 164 6 0 5487 5650 470679414 470679251 2.780000e-68 270.0
16 TraesCS2B01G144100 chr5A 94.444 54 2 1 5429 5482 662944713 662944765 1.400000e-11 82.4
17 TraesCS2B01G144100 chr5A 100.000 30 0 0 5654 5683 525074286 525074257 8.470000e-04 56.5
18 TraesCS2B01G144100 chr7D 93.496 369 23 1 5684 6051 340188882 340188514 1.150000e-151 547.0
19 TraesCS2B01G144100 chr7D 92.412 369 26 2 5684 6051 88375393 88375760 5.370000e-145 525.0
20 TraesCS2B01G144100 chr7D 89.840 187 14 5 5469 5652 254573887 254573703 1.010000e-57 235.0
21 TraesCS2B01G144100 chr7D 81.868 182 28 5 577 754 565187729 565187549 1.360000e-31 148.0
22 TraesCS2B01G144100 chr7D 88.525 61 5 2 5420 5479 403560466 403560525 8.410000e-09 73.1
23 TraesCS2B01G144100 chr7D 100.000 30 0 0 5654 5683 88376055 88376084 8.470000e-04 56.5
24 TraesCS2B01G144100 chr5D 93.496 369 23 1 5684 6051 127932210 127932578 1.150000e-151 547.0
25 TraesCS2B01G144100 chr5D 92.683 369 26 1 5684 6051 227590871 227590503 1.150000e-146 531.0
26 TraesCS2B01G144100 chr5D 92.265 181 13 1 5474 5653 517854997 517855177 7.780000e-64 255.0
27 TraesCS2B01G144100 chr5D 86.243 189 18 6 5487 5672 404608804 404608987 1.330000e-46 198.0
28 TraesCS2B01G144100 chr5D 100.000 30 0 0 5654 5683 127932893 127932922 8.470000e-04 56.5
29 TraesCS2B01G144100 chr5B 92.895 380 17 4 5682 6051 510707157 510706778 1.480000e-150 544.0
30 TraesCS2B01G144100 chr5B 96.951 164 5 0 5485 5648 405526491 405526328 5.970000e-70 276.0
31 TraesCS2B01G144100 chr5B 95.906 171 4 3 5478 5647 677663547 677663715 2.150000e-69 274.0
32 TraesCS2B01G144100 chr5B 86.316 190 19 5 5487 5672 216348729 216348915 3.700000e-47 200.0
33 TraesCS2B01G144100 chr5B 90.769 65 4 2 5419 5482 615610202 615610265 1.080000e-12 86.1
34 TraesCS2B01G144100 chr5B 90.476 63 4 2 5421 5482 615607524 615607585 1.400000e-11 82.4
35 TraesCS2B01G144100 chr5B 100.000 30 0 0 5654 5683 510706463 510706434 8.470000e-04 56.5
36 TraesCS2B01G144100 chr7B 92.105 380 20 4 5682 6051 727382494 727382873 1.490000e-145 527.0
37 TraesCS2B01G144100 chr7B 94.737 57 1 2 5423 5478 695761161 695761216 3.000000e-13 87.9
38 TraesCS2B01G144100 chr7B 97.619 42 0 1 713 754 44941286 44941326 3.030000e-08 71.3
39 TraesCS2B01G144100 chr3B 77.477 888 142 37 1935 2798 681207548 681206695 4.240000e-131 479.0
40 TraesCS2B01G144100 chr3B 83.453 278 40 4 3222 3493 681206342 681206065 2.800000e-63 254.0
41 TraesCS2B01G144100 chr3D 83.152 368 48 11 2435 2798 517485209 517484852 2.100000e-84 324.0
42 TraesCS2B01G144100 chr3D 83.793 290 42 5 1938 2223 517485733 517485445 2.780000e-68 270.0
43 TraesCS2B01G144100 chr3D 79.946 369 57 13 4065 4420 517483454 517483090 7.780000e-64 255.0
44 TraesCS2B01G144100 chr3D 94.737 57 1 2 5423 5478 27949912 27949857 3.000000e-13 87.9
45 TraesCS2B01G144100 chr3A 81.649 376 50 14 2435 2799 653326408 653326041 1.650000e-75 294.0
46 TraesCS2B01G144100 chr3A 83.596 317 43 9 1935 2245 653326821 653326508 7.670000e-74 289.0
47 TraesCS2B01G144100 chr3A 82.508 303 40 9 4108 4398 653324324 653324023 2.800000e-63 254.0
48 TraesCS2B01G144100 chr3A 78.028 355 57 15 2977 3327 653325938 653325601 2.860000e-48 204.0
49 TraesCS2B01G144100 chr3A 89.855 69 5 2 5421 5488 54282459 54282526 3.000000e-13 87.9
50 TraesCS2B01G144100 chr1B 96.341 164 6 0 5487 5650 605929281 605929118 2.780000e-68 270.0
51 TraesCS2B01G144100 chr1B 96.296 162 5 1 5487 5648 597265657 597265817 1.290000e-66 265.0
52 TraesCS2B01G144100 chr6B 96.273 161 6 0 5487 5647 467394465 467394625 1.290000e-66 265.0
53 TraesCS2B01G144100 chr6B 91.908 173 14 0 5482 5654 86407054 86407226 6.060000e-60 243.0
54 TraesCS2B01G144100 chr6B 78.212 179 38 1 577 754 698003345 698003523 4.960000e-21 113.0
55 TraesCS2B01G144100 chr7A 94.048 168 9 1 5485 5652 532703593 532703759 2.800000e-63 254.0
56 TraesCS2B01G144100 chr7A 83.060 183 20 7 579 754 651057680 651057502 8.120000e-34 156.0
57 TraesCS2B01G144100 chr4B 93.452 168 10 1 5481 5648 436511377 436511211 1.300000e-61 248.0
58 TraesCS2B01G144100 chr6D 92.045 176 12 2 5481 5655 436727842 436728016 4.680000e-61 246.0
59 TraesCS2B01G144100 chr6D 86.667 75 4 5 5405 5479 36692770 36692838 1.810000e-10 78.7
60 TraesCS2B01G144100 chr4A 84.127 189 25 5 5486 5673 232573032 232572848 1.730000e-40 178.0
61 TraesCS2B01G144100 chr4A 93.220 59 4 0 5420 5478 477063757 477063699 3.000000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G144100 chr2B 110407811 110413861 6050 True 11175.000000 11175 100.000000 1 6051 1 chr2B.!!$R2 6050
1 TraesCS2B01G144100 chr2A 71589288 71593756 4468 True 6754.000000 6754 93.918000 583 5072 1 chr2A.!!$R1 4489
2 TraesCS2B01G144100 chr2D 73001593 73007395 5802 True 2431.533333 5758 93.589667 1 5328 3 chr2D.!!$R1 5327
3 TraesCS2B01G144100 chr5A 525074257 525076868 2611 True 303.750000 551 96.693000 5654 6051 2 chr5A.!!$R2 397
4 TraesCS2B01G144100 chr7D 88375393 88376084 691 False 290.750000 525 96.206000 5654 6051 2 chr7D.!!$F2 397
5 TraesCS2B01G144100 chr5D 127932210 127932922 712 False 301.750000 547 96.748000 5654 6051 2 chr5D.!!$F3 397
6 TraesCS2B01G144100 chr5B 510706434 510707157 723 True 300.250000 544 96.447500 5654 6051 2 chr5B.!!$R2 397
7 TraesCS2B01G144100 chr3B 681206065 681207548 1483 True 366.500000 479 80.465000 1935 3493 2 chr3B.!!$R1 1558
8 TraesCS2B01G144100 chr3D 517483090 517485733 2643 True 283.000000 324 82.297000 1938 4420 3 chr3D.!!$R2 2482
9 TraesCS2B01G144100 chr3A 653324023 653326821 2798 True 260.250000 294 81.445250 1935 4398 4 chr3A.!!$R1 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 987 0.034059 CACAACTTCTCCCTCGCTGT 59.966 55.000 0.00 0.00 0.00 4.40 F
1387 1391 0.877649 CGACCCTGATCAATCCTGCG 60.878 60.000 0.00 0.00 0.00 5.18 F
1635 2178 2.091277 CGTCTTCTGAGTTTAGCGCTTG 59.909 50.000 18.68 0.00 0.00 4.01 F
2763 3375 2.232452 AGGTCTGCACAGTCACACTATC 59.768 50.000 0.00 0.00 0.00 2.08 F
3111 3985 3.624326 TTTCGCTATGTGCATTATGCC 57.376 42.857 15.06 6.72 44.23 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2692 3.117093 TGATCTAGGATCTTCTCGGGGTT 60.117 47.826 8.66 0.0 0.00 4.11 R
3327 4204 3.370840 TGAAGTAGCAGATGGGCAAAT 57.629 42.857 0.00 0.0 35.83 2.32 R
3531 4521 3.258123 GTCCATAGCCACCACAAAAACAT 59.742 43.478 0.00 0.0 0.00 2.71 R
3709 5040 1.142097 GGTTCCAGCCTCTACTCGC 59.858 63.158 0.00 0.0 0.00 5.03 R
5078 6501 1.347817 CTCCTGACTTGCGTTCGAGC 61.348 60.000 0.00 0.0 37.71 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.668419 GATGGTTGGTTGGAGGATCG 58.332 55.000 0.00 0.00 34.37 3.69
33 34 3.243569 GGTTGGAGGATCGTGATAGAGTG 60.244 52.174 0.00 0.00 34.37 3.51
41 42 7.060383 AGGATCGTGATAGAGTGAAAATCAT 57.940 36.000 0.00 0.00 30.01 2.45
83 84 5.086621 AGCTTTGGATAAGGATGTTTTGGT 58.913 37.500 0.00 0.00 0.00 3.67
87 88 4.340617 TGGATAAGGATGTTTTGGTCACC 58.659 43.478 0.00 0.00 0.00 4.02
88 89 3.377172 GGATAAGGATGTTTTGGTCACCG 59.623 47.826 0.00 0.00 0.00 4.94
91 92 2.774687 AGGATGTTTTGGTCACCGTAC 58.225 47.619 0.00 0.00 0.00 3.67
97 98 3.623960 TGTTTTGGTCACCGTACAAAGAG 59.376 43.478 0.00 0.00 35.74 2.85
98 99 1.873698 TTGGTCACCGTACAAAGAGC 58.126 50.000 0.00 0.00 0.00 4.09
109 110 3.301906 CGTACAAAGAGCGTGATCTTGAG 59.698 47.826 0.54 0.67 39.47 3.02
128 129 3.508402 TGAGCTCTAACCAACATCGTGTA 59.492 43.478 16.19 0.00 0.00 2.90
185 186 1.016627 ATGGCCACAATTCGACATCG 58.983 50.000 8.16 0.00 41.45 3.84
213 214 6.205784 TGCCAAAGATTTTACAACTTTCTCG 58.794 36.000 0.00 0.00 32.59 4.04
234 235 6.005583 TCGTAAGATAAAACTCACGTCTGT 57.994 37.500 0.00 0.00 45.01 3.41
248 249 5.457140 TCACGTCTGTTTTTCCATAATTGC 58.543 37.500 0.00 0.00 0.00 3.56
256 257 9.044150 TCTGTTTTTCCATAATTGCTTTCTTTG 57.956 29.630 0.00 0.00 0.00 2.77
261 262 6.916360 TCCATAATTGCTTTCTTTGAACCT 57.084 33.333 0.00 0.00 0.00 3.50
265 266 8.469200 CCATAATTGCTTTCTTTGAACCTATGA 58.531 33.333 0.00 0.00 0.00 2.15
276 277 3.404899 TGAACCTATGACCGAACCAAAC 58.595 45.455 0.00 0.00 0.00 2.93
278 279 2.774687 ACCTATGACCGAACCAAACAC 58.225 47.619 0.00 0.00 0.00 3.32
280 281 3.142951 CCTATGACCGAACCAAACACAA 58.857 45.455 0.00 0.00 0.00 3.33
281 282 3.566322 CCTATGACCGAACCAAACACAAA 59.434 43.478 0.00 0.00 0.00 2.83
283 284 2.438411 TGACCGAACCAAACACAAACT 58.562 42.857 0.00 0.00 0.00 2.66
284 285 2.162608 TGACCGAACCAAACACAAACTG 59.837 45.455 0.00 0.00 0.00 3.16
286 287 3.020984 ACCGAACCAAACACAAACTGAT 58.979 40.909 0.00 0.00 0.00 2.90
287 288 3.181491 ACCGAACCAAACACAAACTGATG 60.181 43.478 0.00 0.00 0.00 3.07
288 289 3.066064 CCGAACCAAACACAAACTGATGA 59.934 43.478 0.00 0.00 0.00 2.92
289 290 4.439426 CCGAACCAAACACAAACTGATGAA 60.439 41.667 0.00 0.00 0.00 2.57
290 291 5.098893 CGAACCAAACACAAACTGATGAAA 58.901 37.500 0.00 0.00 0.00 2.69
291 292 5.004345 CGAACCAAACACAAACTGATGAAAC 59.996 40.000 0.00 0.00 0.00 2.78
292 293 4.754322 ACCAAACACAAACTGATGAAACC 58.246 39.130 0.00 0.00 0.00 3.27
293 294 4.119136 CCAAACACAAACTGATGAAACCC 58.881 43.478 0.00 0.00 0.00 4.11
294 295 3.708563 AACACAAACTGATGAAACCCG 57.291 42.857 0.00 0.00 0.00 5.28
295 296 2.650322 ACACAAACTGATGAAACCCGT 58.350 42.857 0.00 0.00 0.00 5.28
296 297 3.020984 ACACAAACTGATGAAACCCGTT 58.979 40.909 0.00 0.00 0.00 4.44
310 311 1.967779 ACCCGTTAGCAAAGCCAAATT 59.032 42.857 0.00 0.00 0.00 1.82
318 319 4.089408 AGCAAAGCCAAATTGTCCAATT 57.911 36.364 0.00 0.00 42.35 2.32
320 321 4.996758 AGCAAAGCCAAATTGTCCAATTAC 59.003 37.500 5.73 0.32 39.88 1.89
323 324 3.426615 AGCCAAATTGTCCAATTACCGA 58.573 40.909 5.73 0.00 39.88 4.69
335 336 3.126343 CCAATTACCGAACCCGAAGAAAG 59.874 47.826 0.00 0.00 38.22 2.62
336 337 3.967332 ATTACCGAACCCGAAGAAAGA 57.033 42.857 0.00 0.00 38.22 2.52
337 338 3.308438 TTACCGAACCCGAAGAAAGAG 57.692 47.619 0.00 0.00 38.22 2.85
338 339 1.335145 ACCGAACCCGAAGAAAGAGA 58.665 50.000 0.00 0.00 38.22 3.10
339 340 1.000618 ACCGAACCCGAAGAAAGAGAC 59.999 52.381 0.00 0.00 38.22 3.36
341 342 1.711206 GAACCCGAAGAAAGAGACGG 58.289 55.000 0.00 0.00 44.16 4.79
342 343 1.000618 GAACCCGAAGAAAGAGACGGT 59.999 52.381 0.00 0.00 43.22 4.83
343 344 1.046204 ACCCGAAGAAAGAGACGGTT 58.954 50.000 0.00 0.00 43.22 4.44
344 345 1.270147 ACCCGAAGAAAGAGACGGTTG 60.270 52.381 0.00 0.00 43.22 3.77
345 346 1.429463 CCGAAGAAAGAGACGGTTGG 58.571 55.000 0.00 0.00 40.42 3.77
359 360 2.747446 ACGGTTGGTGATAGTTGATTGC 59.253 45.455 0.00 0.00 0.00 3.56
381 382 6.184068 TGCTGGTTTTATGATAGCTAACCAA 58.816 36.000 14.31 0.72 45.33 3.67
390 391 3.133901 TGATAGCTAACCAATCTTGCCGA 59.866 43.478 0.00 0.00 0.00 5.54
391 392 2.717639 AGCTAACCAATCTTGCCGAT 57.282 45.000 0.00 0.00 0.00 4.18
392 393 3.838244 AGCTAACCAATCTTGCCGATA 57.162 42.857 0.00 0.00 0.00 2.92
393 394 4.150897 AGCTAACCAATCTTGCCGATAA 57.849 40.909 0.00 0.00 0.00 1.75
395 396 5.133221 AGCTAACCAATCTTGCCGATAATT 58.867 37.500 0.00 0.00 0.00 1.40
402 403 6.321181 ACCAATCTTGCCGATAATTGTTACAT 59.679 34.615 0.00 0.00 0.00 2.29
405 406 6.993786 TCTTGCCGATAATTGTTACATTGA 57.006 33.333 0.00 0.00 0.00 2.57
420 421 7.249858 TGTTACATTGACATGATGTATTGTGC 58.750 34.615 14.18 9.38 39.12 4.57
427 428 6.405538 TGACATGATGTATTGTGCTGTCTAA 58.594 36.000 0.00 0.00 34.20 2.10
431 432 8.186163 ACATGATGTATTGTGCTGTCTAATTTG 58.814 33.333 0.00 0.00 0.00 2.32
432 433 7.686438 TGATGTATTGTGCTGTCTAATTTGT 57.314 32.000 0.00 0.00 0.00 2.83
433 434 8.109705 TGATGTATTGTGCTGTCTAATTTGTT 57.890 30.769 0.00 0.00 0.00 2.83
434 435 8.575589 TGATGTATTGTGCTGTCTAATTTGTTT 58.424 29.630 0.00 0.00 0.00 2.83
435 436 9.410556 GATGTATTGTGCTGTCTAATTTGTTTT 57.589 29.630 0.00 0.00 0.00 2.43
442 443 7.084486 GTGCTGTCTAATTTGTTTTTAGGGAG 58.916 38.462 0.00 0.00 0.00 4.30
445 446 7.575155 GCTGTCTAATTTGTTTTTAGGGAGGAC 60.575 40.741 0.00 0.00 0.00 3.85
446 447 7.523415 TGTCTAATTTGTTTTTAGGGAGGACT 58.477 34.615 0.00 0.00 0.00 3.85
457 458 9.945904 GTTTTTAGGGAGGACTATTATGGATAG 57.054 37.037 0.00 0.00 42.88 2.08
458 459 7.735326 TTTAGGGAGGACTATTATGGATAGC 57.265 40.000 0.00 0.00 41.26 2.97
496 497 3.334583 AATGGTGCATTGTCTACGAGT 57.665 42.857 0.00 0.00 32.39 4.18
497 498 2.831685 TGGTGCATTGTCTACGAGTT 57.168 45.000 0.00 0.00 0.00 3.01
510 511 8.961294 TTGTCTACGAGTTTTAGTAATCAGAC 57.039 34.615 0.00 0.00 0.00 3.51
529 530 1.751924 ACAATCTAGAGGCTCGTCCAC 59.248 52.381 9.22 0.00 37.29 4.02
530 531 1.025812 AATCTAGAGGCTCGTCCACG 58.974 55.000 9.22 0.00 41.45 4.94
531 532 0.107116 ATCTAGAGGCTCGTCCACGT 60.107 55.000 9.22 0.00 40.80 4.49
532 533 0.743701 TCTAGAGGCTCGTCCACGTC 60.744 60.000 9.22 0.00 40.80 4.34
533 534 1.716826 CTAGAGGCTCGTCCACGTCC 61.717 65.000 9.22 2.45 40.80 4.79
534 535 2.473891 TAGAGGCTCGTCCACGTCCA 62.474 60.000 9.22 0.00 40.80 4.02
537 538 2.579787 GCTCGTCCACGTCCATCG 60.580 66.667 0.00 0.00 46.00 3.84
554 555 6.154445 GTCCATCGATAAACTAGCGGAAATA 58.846 40.000 0.00 0.00 38.27 1.40
559 560 9.530129 CATCGATAAACTAGCGGAAATATTTTC 57.470 33.333 1.43 0.00 38.27 2.29
560 561 8.651391 TCGATAAACTAGCGGAAATATTTTCA 57.349 30.769 7.26 0.00 38.27 2.69
563 564 9.651718 GATAAACTAGCGGAAATATTTTCAGTG 57.348 33.333 7.26 0.00 0.00 3.66
564 565 5.485662 ACTAGCGGAAATATTTTCAGTGC 57.514 39.130 7.26 2.48 0.00 4.40
566 567 4.989279 AGCGGAAATATTTTCAGTGCAT 57.011 36.364 7.26 0.00 0.00 3.96
567 568 4.675510 AGCGGAAATATTTTCAGTGCATG 58.324 39.130 7.26 0.00 0.00 4.06
568 569 4.158394 AGCGGAAATATTTTCAGTGCATGT 59.842 37.500 7.26 0.00 0.00 3.21
569 570 4.500477 GCGGAAATATTTTCAGTGCATGTC 59.500 41.667 7.26 0.00 0.00 3.06
570 571 4.730042 CGGAAATATTTTCAGTGCATGTCG 59.270 41.667 7.26 0.00 0.00 4.35
571 572 5.640732 GGAAATATTTTCAGTGCATGTCGT 58.359 37.500 1.43 0.00 0.00 4.34
572 573 6.456315 CGGAAATATTTTCAGTGCATGTCGTA 60.456 38.462 7.26 0.00 0.00 3.43
573 574 7.417612 GGAAATATTTTCAGTGCATGTCGTAT 58.582 34.615 1.43 0.00 0.00 3.06
589 590 1.552337 CGTATGATGGGAGAGGGATGG 59.448 57.143 0.00 0.00 0.00 3.51
611 612 3.306019 GCAAACGAACCCCTTTTGATGAT 60.306 43.478 0.00 0.00 36.46 2.45
639 640 9.107367 GTTTTAGTTTTGAGATGAGATCAAACG 57.893 33.333 0.00 0.00 44.17 3.60
643 644 4.535526 TTGAGATGAGATCAAACGGTGA 57.464 40.909 0.00 0.00 41.67 4.02
684 685 2.987821 GCCGTCTCTAACAGAAACTGTC 59.012 50.000 4.88 0.00 44.62 3.51
687 688 5.621555 GCCGTCTCTAACAGAAACTGTCATA 60.622 44.000 4.88 0.00 44.62 2.15
723 725 3.057806 CCCGTCATTCCCACAACTAAAAC 60.058 47.826 0.00 0.00 0.00 2.43
739 741 4.992951 ACTAAAACTACCAGCGAAATCGTT 59.007 37.500 4.59 0.00 42.22 3.85
754 756 2.625823 CGTTCGCAAATGCCACCCT 61.626 57.895 0.00 0.00 37.91 4.34
767 769 1.132453 GCCACCCTTTATGACGAAAGC 59.868 52.381 0.00 0.00 35.47 3.51
768 770 1.396996 CCACCCTTTATGACGAAAGCG 59.603 52.381 0.00 0.00 44.79 4.68
769 771 2.343101 CACCCTTTATGACGAAAGCGA 58.657 47.619 0.00 0.00 41.64 4.93
770 772 2.739913 CACCCTTTATGACGAAAGCGAA 59.260 45.455 0.00 0.00 41.64 4.70
771 773 3.187637 CACCCTTTATGACGAAAGCGAAA 59.812 43.478 0.00 0.00 41.64 3.46
773 775 3.435671 CCCTTTATGACGAAAGCGAAAGT 59.564 43.478 0.00 0.00 41.64 2.66
774 776 4.083484 CCCTTTATGACGAAAGCGAAAGTT 60.083 41.667 0.00 0.00 41.64 2.66
776 778 5.333798 CCTTTATGACGAAAGCGAAAGTTCA 60.334 40.000 0.00 0.00 41.64 3.18
777 779 3.521524 ATGACGAAAGCGAAAGTTCAC 57.478 42.857 0.00 0.00 41.64 3.18
779 781 2.673862 TGACGAAAGCGAAAGTTCACAA 59.326 40.909 0.00 0.00 41.64 3.33
781 783 2.676342 ACGAAAGCGAAAGTTCACAAGT 59.324 40.909 0.00 0.00 41.64 3.16
782 784 3.126343 ACGAAAGCGAAAGTTCACAAGTT 59.874 39.130 0.00 0.00 41.64 2.66
783 785 4.330620 ACGAAAGCGAAAGTTCACAAGTTA 59.669 37.500 0.00 0.00 41.64 2.24
784 786 5.163834 ACGAAAGCGAAAGTTCACAAGTTAA 60.164 36.000 0.00 0.00 41.64 2.01
785 787 5.392585 CGAAAGCGAAAGTTCACAAGTTAAG 59.607 40.000 0.00 0.00 40.82 1.85
787 789 5.659048 AGCGAAAGTTCACAAGTTAAGAG 57.341 39.130 0.00 0.00 0.00 2.85
852 854 6.090088 TGTCTGTTTTTGATTTCAACGTTTGG 59.910 34.615 0.00 0.00 35.28 3.28
865 867 6.330004 TCAACGTTTGGATACTACTGTACA 57.670 37.500 0.00 0.00 37.61 2.90
877 879 9.245962 GGATACTACTGTACATACATTGTCAAC 57.754 37.037 0.00 0.00 39.87 3.18
879 881 9.803315 ATACTACTGTACATACATTGTCAACAG 57.197 33.333 14.31 14.31 44.90 3.16
880 882 7.097192 ACTACTGTACATACATTGTCAACAGG 58.903 38.462 17.64 8.91 44.19 4.00
882 884 5.012664 ACTGTACATACATTGTCAACAGGGA 59.987 40.000 17.64 0.00 44.19 4.20
883 885 6.061022 TGTACATACATTGTCAACAGGGAT 57.939 37.500 0.00 0.00 39.87 3.85
884 886 7.093068 ACTGTACATACATTGTCAACAGGGATA 60.093 37.037 17.64 0.00 44.19 2.59
885 887 7.801104 TGTACATACATTGTCAACAGGGATAT 58.199 34.615 0.00 0.00 39.87 1.63
887 889 9.120538 GTACATACATTGTCAACAGGGATATTT 57.879 33.333 0.00 0.00 39.87 1.40
960 962 5.117406 AGAAAGATAAGGTTTAGGCCAGG 57.883 43.478 5.01 0.00 0.00 4.45
985 987 0.034059 CACAACTTCTCCCTCGCTGT 59.966 55.000 0.00 0.00 0.00 4.40
987 989 1.004440 AACTTCTCCCTCGCTGTGC 60.004 57.895 0.00 0.00 0.00 4.57
1068 1071 4.410400 CTCCTTCCACCCCACCGC 62.410 72.222 0.00 0.00 0.00 5.68
1242 1245 1.242076 GGTACGCCGCTCCTATCTTA 58.758 55.000 0.00 0.00 0.00 2.10
1255 1258 6.528423 CGCTCCTATCTTAATAATCGAACAGG 59.472 42.308 0.00 0.00 0.00 4.00
1257 1260 7.241042 TCCTATCTTAATAATCGAACAGGGG 57.759 40.000 0.00 0.00 0.00 4.79
1262 1266 7.316393 TCTTAATAATCGAACAGGGGATGAT 57.684 36.000 0.00 0.00 0.00 2.45
1387 1391 0.877649 CGACCCTGATCAATCCTGCG 60.878 60.000 0.00 0.00 0.00 5.18
1418 1960 6.808829 TGATTTTGAATAAGATGCATGGGTC 58.191 36.000 2.46 0.00 0.00 4.46
1464 2006 4.446371 GACCTGAATAAGTAGCAGTGCAT 58.554 43.478 19.20 5.07 0.00 3.96
1568 2111 5.370880 AGGAGGCATGGAGTCTAATGTTATT 59.629 40.000 0.00 0.00 27.31 1.40
1582 2125 9.522804 GTCTAATGTTATTCAGAAGTAGACCAG 57.477 37.037 0.00 0.00 33.29 4.00
1598 2141 3.009584 AGACCAGTTTCCCCAGAAGAATC 59.990 47.826 0.00 0.00 32.35 2.52
1602 2145 4.507335 CCAGTTTCCCCAGAAGAATCTTCA 60.507 45.833 23.20 1.00 32.03 3.02
1614 2157 7.758528 CCAGAAGAATCTTCAAATGTTTCATCC 59.241 37.037 23.20 0.00 32.03 3.51
1620 2163 6.241207 TCTTCAAATGTTTCATCCGTCTTC 57.759 37.500 0.00 0.00 0.00 2.87
1634 2177 2.329379 CGTCTTCTGAGTTTAGCGCTT 58.671 47.619 18.68 0.00 0.00 4.68
1635 2178 2.091277 CGTCTTCTGAGTTTAGCGCTTG 59.909 50.000 18.68 0.00 0.00 4.01
1636 2179 3.318017 GTCTTCTGAGTTTAGCGCTTGA 58.682 45.455 18.68 1.06 0.00 3.02
1678 2221 4.755388 CATGTCTAGTTTTCATCGCATCG 58.245 43.478 0.00 0.00 0.00 3.84
1706 2251 9.925268 CATTGACTTGGTAAATTATAACCGTAC 57.075 33.333 0.00 0.00 38.70 3.67
1741 2286 3.584834 GCCTTGCCATTTAACGTTTGAT 58.415 40.909 5.91 0.00 0.00 2.57
1800 2348 5.163683 GGTGATCATGATTGAGGTTCTGTTG 60.164 44.000 10.14 0.00 34.73 3.33
1866 2418 4.959596 ATGAGTAGCTCAAAGCACATTG 57.040 40.909 2.80 0.00 45.56 2.82
2040 2595 5.992217 GTGATACCCTTGATCATTACCTCAC 59.008 44.000 0.00 2.95 35.81 3.51
2274 2833 5.324409 TGACAATACATGCTCTTTTTCCCT 58.676 37.500 0.00 0.00 0.00 4.20
2410 3004 4.927267 TGGGCCTCCCTGTATAAATATG 57.073 45.455 4.53 0.00 45.70 1.78
2763 3375 2.232452 AGGTCTGCACAGTCACACTATC 59.768 50.000 0.00 0.00 0.00 2.08
3111 3985 3.624326 TTTCGCTATGTGCATTATGCC 57.376 42.857 15.06 6.72 44.23 4.40
3327 4204 5.957842 ATGCGTCTTTCCTTTGTTGATTA 57.042 34.783 0.00 0.00 0.00 1.75
3332 4209 6.399986 GCGTCTTTCCTTTGTTGATTATTTGC 60.400 38.462 0.00 0.00 0.00 3.68
3499 4487 7.884877 TCTTCATTACTGATTTTGTCTCACCAT 59.115 33.333 0.00 0.00 0.00 3.55
3531 4521 8.684386 TTTCTTTGTGTAAAGTATCATGTCCA 57.316 30.769 0.00 0.00 43.04 4.02
3650 4879 9.719355 TTCAAGTTAAAGCATCTCAGTATACAA 57.281 29.630 5.50 0.00 0.00 2.41
3651 4880 9.151471 TCAAGTTAAAGCATCTCAGTATACAAC 57.849 33.333 5.50 0.00 0.00 3.32
3682 4911 6.260050 GCTGCCATACTAAGCAATAAACACTA 59.740 38.462 0.00 0.00 38.82 2.74
3905 5287 0.682532 TTCAGCCACTTGCACAACCA 60.683 50.000 0.00 0.00 44.83 3.67
3924 5306 3.054166 CCACACATAACTTCGAACACGA 58.946 45.455 0.00 0.00 0.00 4.35
3985 5367 4.514441 GGCATATGGTCTGATTTCTCACTG 59.486 45.833 4.56 0.00 0.00 3.66
4097 5501 3.440522 GCCTCTCTTATTGGTTGTGTTCC 59.559 47.826 0.00 0.00 0.00 3.62
4102 5506 5.071788 TCTCTTATTGGTTGTGTTCCTCAGT 59.928 40.000 0.00 0.00 0.00 3.41
4241 5652 6.786959 AGCAGATGATCTAGAAGGAAAGGTAT 59.213 38.462 0.00 0.00 0.00 2.73
4398 5818 1.210478 TCTGGGAGCTCTTTGGTATGC 59.790 52.381 14.64 0.00 0.00 3.14
4408 5828 4.558860 GCTCTTTGGTATGCGTCATTTTTC 59.441 41.667 0.00 0.00 0.00 2.29
4415 5835 5.350365 TGGTATGCGTCATTTTTCTGTACTC 59.650 40.000 0.00 0.00 0.00 2.59
4422 5842 6.140737 GCGTCATTTTTCTGTACTCAAAACTG 59.859 38.462 10.99 10.99 0.00 3.16
4433 5853 9.042008 TCTGTACTCAAAACTGTAATTGACTTC 57.958 33.333 5.21 1.44 32.46 3.01
4476 5896 7.721399 TGTTTTAGATTTTCCTCTCTTCTGCTT 59.279 33.333 0.00 0.00 0.00 3.91
4507 5927 5.399013 CACTATGGCATGCACATAATCATG 58.601 41.667 21.36 13.35 42.08 3.07
4550 5971 3.624900 CAAACATGGATCATAAGCTGCG 58.375 45.455 0.00 0.00 0.00 5.18
4552 5973 3.198409 ACATGGATCATAAGCTGCGAA 57.802 42.857 0.00 0.00 0.00 4.70
4564 5985 4.584327 AAGCTGCGAACCAACTAAAAAT 57.416 36.364 0.00 0.00 0.00 1.82
4565 5986 3.900941 AGCTGCGAACCAACTAAAAATG 58.099 40.909 0.00 0.00 0.00 2.32
4566 5987 3.568007 AGCTGCGAACCAACTAAAAATGA 59.432 39.130 0.00 0.00 0.00 2.57
4569 5990 5.405269 GCTGCGAACCAACTAAAAATGAAAT 59.595 36.000 0.00 0.00 0.00 2.17
4850 6273 3.988379 TTGAACCTTCAGTGCATGTTC 57.012 42.857 4.44 4.44 38.61 3.18
4851 6274 2.229792 TGAACCTTCAGTGCATGTTCC 58.770 47.619 8.07 0.00 35.58 3.62
4860 6283 2.361757 CAGTGCATGTTCCCTTTTGTGA 59.638 45.455 0.00 0.00 0.00 3.58
4875 6298 5.704053 CCTTTTGTGATAAAGGTACGAAGGT 59.296 40.000 6.92 0.00 45.93 3.50
5043 6466 8.298729 TGGTGCCATAACATGTATGAAAAATA 57.701 30.769 0.00 0.00 0.00 1.40
5064 6487 3.805066 TGACCCAATGATCCAGTTGAA 57.195 42.857 4.66 0.00 0.00 2.69
5104 6527 0.674581 CGCAAGTCAGGAGATGCCAA 60.675 55.000 0.00 0.00 40.02 4.52
5111 6534 3.584848 AGTCAGGAGATGCCAAACTTACT 59.415 43.478 0.00 0.00 40.02 2.24
5115 6538 3.010420 GGAGATGCCAAACTTACTGTCC 58.990 50.000 0.00 0.00 36.34 4.02
5129 6552 3.526931 ACTGTCCTGATTGTACATCCG 57.473 47.619 0.00 0.00 0.00 4.18
5132 6555 4.098044 ACTGTCCTGATTGTACATCCGTAG 59.902 45.833 0.00 0.00 0.00 3.51
5165 6588 3.196685 AGTTTGGACTCTGTAGATCTGCC 59.803 47.826 5.18 0.00 0.00 4.85
5166 6589 2.836636 TGGACTCTGTAGATCTGCCT 57.163 50.000 5.18 0.00 0.00 4.75
5178 6601 3.357203 AGATCTGCCTCTCAGTTCGTAA 58.643 45.455 0.00 0.00 43.17 3.18
5197 6620 7.241663 TCGTAATTAATGGTGCTTGTATCAC 57.758 36.000 0.00 0.00 0.00 3.06
5214 6637 4.524802 ATCACCTCAAATATTGCCAGGA 57.475 40.909 12.48 0.00 31.13 3.86
5243 6666 1.624336 AAAAAGGATGCAGCAGCTGA 58.376 45.000 27.39 11.60 42.74 4.26
5269 6695 5.560953 GCTCCACACAGTAACAAAGTTGATC 60.561 44.000 0.00 0.00 0.00 2.92
5274 6700 6.258727 CACACAGTAACAAAGTTGATCTCAGT 59.741 38.462 0.00 0.00 0.00 3.41
5293 6721 4.157472 TCAGTATTGAGACACAGCTCTCAG 59.843 45.833 3.88 0.00 45.86 3.35
5303 6731 3.588336 GCTCTCAGCTTTGGGCAG 58.412 61.111 2.93 0.00 44.79 4.85
5317 6745 0.181350 GGGCAGGTTCTCAGGTATGG 59.819 60.000 0.00 0.00 0.00 2.74
5330 6758 2.077687 GGTATGGAACCTCGGGTAGA 57.922 55.000 0.00 0.00 45.75 2.59
5331 6759 1.962100 GGTATGGAACCTCGGGTAGAG 59.038 57.143 0.00 0.00 45.75 2.43
5348 6776 5.298347 GGTAGAGATCGAACCCATTTTAGG 58.702 45.833 0.00 0.00 0.00 2.69
5349 6777 5.163332 GGTAGAGATCGAACCCATTTTAGGT 60.163 44.000 0.00 0.00 40.14 3.08
5350 6778 4.770795 AGAGATCGAACCCATTTTAGGTG 58.229 43.478 0.00 0.00 37.78 4.00
5351 6779 3.877508 GAGATCGAACCCATTTTAGGTGG 59.122 47.826 0.00 0.00 37.78 4.61
5352 6780 3.521937 AGATCGAACCCATTTTAGGTGGA 59.478 43.478 0.00 0.00 39.12 4.02
5353 6781 4.166144 AGATCGAACCCATTTTAGGTGGAT 59.834 41.667 0.00 0.00 39.12 3.41
5354 6782 5.368523 AGATCGAACCCATTTTAGGTGGATA 59.631 40.000 0.00 0.00 39.12 2.59
5355 6783 4.773013 TCGAACCCATTTTAGGTGGATAC 58.227 43.478 0.00 0.00 39.12 2.24
5356 6784 3.558418 CGAACCCATTTTAGGTGGATACG 59.442 47.826 0.00 0.00 39.12 3.06
5357 6785 4.681244 CGAACCCATTTTAGGTGGATACGA 60.681 45.833 0.00 0.00 39.12 3.43
5358 6786 4.146745 ACCCATTTTAGGTGGATACGAC 57.853 45.455 0.00 0.00 39.12 4.34
5359 6787 3.118149 ACCCATTTTAGGTGGATACGACC 60.118 47.826 0.00 0.00 39.12 4.79
5360 6788 3.473625 CCATTTTAGGTGGATACGACCC 58.526 50.000 0.00 0.00 39.12 4.46
5361 6789 2.965572 TTTTAGGTGGATACGACCCG 57.034 50.000 0.00 0.00 38.18 5.28
5362 6790 0.461135 TTTAGGTGGATACGACCCGC 59.539 55.000 0.00 0.00 38.18 6.13
5365 6793 2.819550 GTGGATACGACCCGCCAT 59.180 61.111 0.00 0.00 42.51 4.40
5366 6794 2.043625 GTGGATACGACCCGCCATA 58.956 57.895 0.00 0.00 42.51 2.74
5367 6795 0.606604 GTGGATACGACCCGCCATAT 59.393 55.000 0.00 0.00 42.51 1.78
5368 6796 1.001633 GTGGATACGACCCGCCATATT 59.998 52.381 0.00 0.00 42.51 1.28
5369 6797 1.001520 TGGATACGACCCGCCATATTG 59.998 52.381 0.00 0.00 42.51 1.90
5370 6798 1.274167 GGATACGACCCGCCATATTGA 59.726 52.381 0.00 0.00 0.00 2.57
5371 6799 2.607187 GATACGACCCGCCATATTGAG 58.393 52.381 0.00 0.00 0.00 3.02
5372 6800 1.405872 TACGACCCGCCATATTGAGT 58.594 50.000 0.00 0.00 0.00 3.41
5373 6801 0.539986 ACGACCCGCCATATTGAGTT 59.460 50.000 0.00 0.00 0.00 3.01
5374 6802 1.065709 ACGACCCGCCATATTGAGTTT 60.066 47.619 0.00 0.00 0.00 2.66
5375 6803 2.168936 ACGACCCGCCATATTGAGTTTA 59.831 45.455 0.00 0.00 0.00 2.01
5376 6804 3.181458 ACGACCCGCCATATTGAGTTTAT 60.181 43.478 0.00 0.00 0.00 1.40
5377 6805 3.432252 CGACCCGCCATATTGAGTTTATC 59.568 47.826 0.00 0.00 0.00 1.75
5378 6806 3.751518 ACCCGCCATATTGAGTTTATCC 58.248 45.455 0.00 0.00 0.00 2.59
5379 6807 3.137544 ACCCGCCATATTGAGTTTATCCA 59.862 43.478 0.00 0.00 0.00 3.41
5380 6808 4.141287 CCCGCCATATTGAGTTTATCCAA 58.859 43.478 0.00 0.00 0.00 3.53
5381 6809 4.766891 CCCGCCATATTGAGTTTATCCAAT 59.233 41.667 0.00 0.00 36.93 3.16
5382 6810 5.943416 CCCGCCATATTGAGTTTATCCAATA 59.057 40.000 0.00 0.00 38.93 1.90
5383 6811 6.603201 CCCGCCATATTGAGTTTATCCAATAT 59.397 38.462 0.00 0.00 43.08 1.28
5384 6812 7.122650 CCCGCCATATTGAGTTTATCCAATATT 59.877 37.037 0.00 0.00 41.43 1.28
5385 6813 8.522830 CCGCCATATTGAGTTTATCCAATATTT 58.477 33.333 0.00 0.00 41.43 1.40
5386 6814 9.559958 CGCCATATTGAGTTTATCCAATATTTC 57.440 33.333 0.00 0.00 41.43 2.17
5387 6815 9.860898 GCCATATTGAGTTTATCCAATATTTCC 57.139 33.333 0.00 0.00 41.43 3.13
5394 6822 9.753674 TGAGTTTATCCAATATTTCCTTGAACT 57.246 29.630 0.00 0.00 0.00 3.01
5396 6824 8.470002 AGTTTATCCAATATTTCCTTGAACTGC 58.530 33.333 0.00 0.00 0.00 4.40
5397 6825 8.470002 GTTTATCCAATATTTCCTTGAACTGCT 58.530 33.333 0.00 0.00 0.00 4.24
5398 6826 9.693739 TTTATCCAATATTTCCTTGAACTGCTA 57.306 29.630 0.00 0.00 0.00 3.49
5399 6827 9.693739 TTATCCAATATTTCCTTGAACTGCTAA 57.306 29.630 0.00 0.00 0.00 3.09
5400 6828 8.593945 ATCCAATATTTCCTTGAACTGCTAAA 57.406 30.769 0.00 0.00 0.00 1.85
5401 6829 8.415950 TCCAATATTTCCTTGAACTGCTAAAA 57.584 30.769 0.00 0.00 0.00 1.52
5402 6830 8.303876 TCCAATATTTCCTTGAACTGCTAAAAC 58.696 33.333 0.00 0.00 0.00 2.43
5403 6831 7.273381 CCAATATTTCCTTGAACTGCTAAAACG 59.727 37.037 0.00 0.00 0.00 3.60
5404 6832 5.767816 ATTTCCTTGAACTGCTAAAACGT 57.232 34.783 0.00 0.00 0.00 3.99
5405 6833 4.806342 TTCCTTGAACTGCTAAAACGTC 57.194 40.909 0.00 0.00 0.00 4.34
5406 6834 3.799366 TCCTTGAACTGCTAAAACGTCA 58.201 40.909 0.00 0.00 0.00 4.35
5407 6835 4.385825 TCCTTGAACTGCTAAAACGTCAT 58.614 39.130 0.00 0.00 0.00 3.06
5408 6836 5.543714 TCCTTGAACTGCTAAAACGTCATA 58.456 37.500 0.00 0.00 0.00 2.15
5409 6837 6.170506 TCCTTGAACTGCTAAAACGTCATAT 58.829 36.000 0.00 0.00 0.00 1.78
5410 6838 7.324935 TCCTTGAACTGCTAAAACGTCATATA 58.675 34.615 0.00 0.00 0.00 0.86
5411 6839 7.985184 TCCTTGAACTGCTAAAACGTCATATAT 59.015 33.333 0.00 0.00 0.00 0.86
5412 6840 9.256477 CCTTGAACTGCTAAAACGTCATATATA 57.744 33.333 0.00 0.00 0.00 0.86
5437 6865 7.599353 TTATGTATATACTCCCTCCTCCTCA 57.401 40.000 13.89 0.00 0.00 3.86
5438 6866 6.682622 ATGTATATACTCCCTCCTCCTCAT 57.317 41.667 13.89 0.00 0.00 2.90
5439 6867 7.789128 ATGTATATACTCCCTCCTCCTCATA 57.211 40.000 13.89 0.00 0.00 2.15
5440 6868 7.599353 TGTATATACTCCCTCCTCCTCATAA 57.401 40.000 13.89 0.00 0.00 1.90
5441 6869 8.188501 TGTATATACTCCCTCCTCCTCATAAT 57.811 38.462 13.89 0.00 0.00 1.28
5442 6870 9.305169 TGTATATACTCCCTCCTCCTCATAATA 57.695 37.037 13.89 0.00 0.00 0.98
5447 6875 7.363759 ACTCCCTCCTCCTCATAATATAAGA 57.636 40.000 0.00 0.00 0.00 2.10
5448 6876 7.418378 ACTCCCTCCTCCTCATAATATAAGAG 58.582 42.308 0.00 0.00 0.00 2.85
5449 6877 7.020168 ACTCCCTCCTCCTCATAATATAAGAGT 59.980 40.741 0.00 0.00 0.00 3.24
5450 6878 7.185565 TCCCTCCTCCTCATAATATAAGAGTG 58.814 42.308 0.00 0.00 0.00 3.51
5451 6879 6.957020 CCCTCCTCCTCATAATATAAGAGTGT 59.043 42.308 0.00 0.00 0.00 3.55
5452 6880 7.456269 CCCTCCTCCTCATAATATAAGAGTGTT 59.544 40.741 0.00 0.00 0.00 3.32
5453 6881 8.875168 CCTCCTCCTCATAATATAAGAGTGTTT 58.125 37.037 0.00 0.00 0.00 2.83
5497 6925 7.672122 AAAAATACTTCTATACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
5498 6926 7.672122 AAAATACTTCTATACTCCCTCCGTT 57.328 36.000 0.00 0.00 0.00 4.44
5499 6927 6.897706 AATACTTCTATACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
5500 6928 3.564264 ACTTCTATACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
5501 6929 3.204831 ACTTCTATACTCCCTCCGTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
5502 6930 4.414846 ACTTCTATACTCCCTCCGTTCCTA 59.585 45.833 0.00 0.00 0.00 2.94
5503 6931 5.103771 ACTTCTATACTCCCTCCGTTCCTAA 60.104 44.000 0.00 0.00 0.00 2.69
5504 6932 5.393068 TCTATACTCCCTCCGTTCCTAAA 57.607 43.478 0.00 0.00 0.00 1.85
5505 6933 5.961897 TCTATACTCCCTCCGTTCCTAAAT 58.038 41.667 0.00 0.00 0.00 1.40
5506 6934 7.095183 TCTATACTCCCTCCGTTCCTAAATA 57.905 40.000 0.00 0.00 0.00 1.40
5507 6935 7.706674 TCTATACTCCCTCCGTTCCTAAATAT 58.293 38.462 0.00 0.00 0.00 1.28
5508 6936 8.839745 TCTATACTCCCTCCGTTCCTAAATATA 58.160 37.037 0.00 0.00 0.00 0.86
5509 6937 9.471702 CTATACTCCCTCCGTTCCTAAATATAA 57.528 37.037 0.00 0.00 0.00 0.98
5510 6938 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5511 6939 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5512 6940 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5513 6941 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5514 6942 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5515 6943 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5516 6944 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5517 6945 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
5518 6946 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
5519 6947 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
5520 6948 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
5539 6967 6.656632 GGAGACATTCCACTATAGATCACA 57.343 41.667 6.78 0.00 46.01 3.58
5540 6968 7.238486 GGAGACATTCCACTATAGATCACAT 57.762 40.000 6.78 0.00 46.01 3.21
5541 6969 8.354711 GGAGACATTCCACTATAGATCACATA 57.645 38.462 6.78 0.00 46.01 2.29
5542 6970 8.247562 GGAGACATTCCACTATAGATCACATAC 58.752 40.741 6.78 0.00 46.01 2.39
5543 6971 7.821652 AGACATTCCACTATAGATCACATACG 58.178 38.462 6.78 0.00 0.00 3.06
5544 6972 6.925211 ACATTCCACTATAGATCACATACGG 58.075 40.000 6.78 0.00 0.00 4.02
5545 6973 6.719829 ACATTCCACTATAGATCACATACGGA 59.280 38.462 6.78 0.00 0.00 4.69
5546 6974 6.819397 TTCCACTATAGATCACATACGGAG 57.181 41.667 6.78 0.00 0.00 4.63
5565 6993 7.360575 ACGGAGTAAAATGAATGAACTACAC 57.639 36.000 0.00 0.00 41.94 2.90
5566 6994 7.159372 ACGGAGTAAAATGAATGAACTACACT 58.841 34.615 0.00 0.00 41.94 3.55
5567 6995 7.331193 ACGGAGTAAAATGAATGAACTACACTC 59.669 37.037 0.00 0.00 41.94 3.51
5568 6996 7.545965 CGGAGTAAAATGAATGAACTACACTCT 59.454 37.037 0.00 0.00 31.58 3.24
5569 6997 9.871238 GGAGTAAAATGAATGAACTACACTCTA 57.129 33.333 0.00 0.00 31.58 2.43
5575 7003 9.846248 AAATGAATGAACTACACTCTAAAATGC 57.154 29.630 0.00 0.00 0.00 3.56
5576 7004 7.977789 TGAATGAACTACACTCTAAAATGCA 57.022 32.000 0.00 0.00 0.00 3.96
5577 7005 8.565896 TGAATGAACTACACTCTAAAATGCAT 57.434 30.769 0.00 0.00 0.00 3.96
5578 7006 8.668353 TGAATGAACTACACTCTAAAATGCATC 58.332 33.333 0.00 0.00 0.00 3.91
5579 7007 8.798859 AATGAACTACACTCTAAAATGCATCT 57.201 30.769 0.00 0.00 0.00 2.90
5580 7008 9.890629 AATGAACTACACTCTAAAATGCATCTA 57.109 29.630 0.00 0.00 0.00 1.98
5590 7018 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
5591 7019 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
5596 7024 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
5597 7025 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
5598 7026 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
5599 7027 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
5600 7028 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
5601 7029 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
5602 7030 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
5603 7031 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
5604 7032 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
5605 7033 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
5606 7034 4.476297 ACATCCGTATGTGGTCCATAGTA 58.524 43.478 0.00 0.00 44.79 1.82
5607 7035 4.897076 ACATCCGTATGTGGTCCATAGTAA 59.103 41.667 0.00 0.00 44.79 2.24
5608 7036 5.364446 ACATCCGTATGTGGTCCATAGTAAA 59.636 40.000 0.00 0.00 44.79 2.01
5609 7037 5.936187 TCCGTATGTGGTCCATAGTAAAA 57.064 39.130 0.00 0.00 36.71 1.52
5610 7038 6.488769 TCCGTATGTGGTCCATAGTAAAAT 57.511 37.500 0.00 0.00 36.71 1.82
5611 7039 6.518493 TCCGTATGTGGTCCATAGTAAAATC 58.482 40.000 0.00 0.00 36.71 2.17
5612 7040 6.325545 TCCGTATGTGGTCCATAGTAAAATCT 59.674 38.462 0.00 0.00 36.71 2.40
5613 7041 6.645415 CCGTATGTGGTCCATAGTAAAATCTC 59.355 42.308 0.00 0.00 36.71 2.75
5614 7042 7.434492 CGTATGTGGTCCATAGTAAAATCTCT 58.566 38.462 0.00 0.00 36.71 3.10
5615 7043 8.573885 CGTATGTGGTCCATAGTAAAATCTCTA 58.426 37.037 0.00 0.00 36.71 2.43
5616 7044 9.694137 GTATGTGGTCCATAGTAAAATCTCTAC 57.306 37.037 0.00 0.00 36.71 2.59
5617 7045 7.727578 TGTGGTCCATAGTAAAATCTCTACA 57.272 36.000 0.00 0.00 0.00 2.74
5618 7046 8.141298 TGTGGTCCATAGTAAAATCTCTACAA 57.859 34.615 0.00 0.00 0.00 2.41
5619 7047 8.598916 TGTGGTCCATAGTAAAATCTCTACAAA 58.401 33.333 0.00 0.00 0.00 2.83
5620 7048 9.099454 GTGGTCCATAGTAAAATCTCTACAAAG 57.901 37.037 0.00 0.00 0.00 2.77
5621 7049 9.042450 TGGTCCATAGTAAAATCTCTACAAAGA 57.958 33.333 0.00 0.00 0.00 2.52
5622 7050 9.315525 GGTCCATAGTAAAATCTCTACAAAGAC 57.684 37.037 0.00 0.00 0.00 3.01
5640 7068 8.943909 ACAAAGACTTATATTAAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5641 7069 7.985752 ACAAAGACTTATATTAAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5642 7070 6.667558 AGACTTATATTAAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5643 7071 6.379579 AGACTTATATTAAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5644 7072 6.494146 AGACTTATATTAAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5645 7073 6.141790 ACTTATATTAAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5646 7074 7.300658 ACTTATATTAAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5647 7075 7.954620 ACTTATATTAAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
5648 7076 8.731591 TTATATTAAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
5649 7077 9.827198 TTATATTAAGGAACGGAGGGAGTATTA 57.173 33.333 0.00 0.00 0.00 0.98
5650 7078 8.912614 ATATTAAGGAACGGAGGGAGTATTAT 57.087 34.615 0.00 0.00 0.00 1.28
5651 7079 4.957684 AAGGAACGGAGGGAGTATTATG 57.042 45.455 0.00 0.00 0.00 1.90
5652 7080 3.240302 AGGAACGGAGGGAGTATTATGG 58.760 50.000 0.00 0.00 0.00 2.74
5653 7081 2.970640 GGAACGGAGGGAGTATTATGGT 59.029 50.000 0.00 0.00 0.00 3.55
5654 7082 4.140853 AGGAACGGAGGGAGTATTATGGTA 60.141 45.833 0.00 0.00 0.00 3.25
5655 7083 4.021632 GGAACGGAGGGAGTATTATGGTAC 60.022 50.000 0.00 0.00 0.00 3.34
5671 7099 3.899052 GGTACAGCACCCATACAGTAA 57.101 47.619 0.00 0.00 42.07 2.24
5672 7100 3.528532 GGTACAGCACCCATACAGTAAC 58.471 50.000 0.00 0.00 42.07 2.50
5673 7101 3.055675 GGTACAGCACCCATACAGTAACA 60.056 47.826 0.00 0.00 42.07 2.41
5674 7102 3.780804 ACAGCACCCATACAGTAACAA 57.219 42.857 0.00 0.00 0.00 2.83
5675 7103 3.408634 ACAGCACCCATACAGTAACAAC 58.591 45.455 0.00 0.00 0.00 3.32
5676 7104 3.072476 ACAGCACCCATACAGTAACAACT 59.928 43.478 0.00 0.00 0.00 3.16
5677 7105 3.436704 CAGCACCCATACAGTAACAACTG 59.563 47.826 4.04 4.04 43.03 3.16
5678 7106 3.326588 AGCACCCATACAGTAACAACTGA 59.673 43.478 12.23 0.00 39.99 3.41
5679 7107 4.069304 GCACCCATACAGTAACAACTGAA 58.931 43.478 12.23 0.00 39.99 3.02
5680 7108 4.083484 GCACCCATACAGTAACAACTGAAC 60.083 45.833 12.23 0.00 39.99 3.18
5681 7109 5.305585 CACCCATACAGTAACAACTGAACT 58.694 41.667 12.23 0.00 39.99 3.01
5682 7110 5.179368 CACCCATACAGTAACAACTGAACTG 59.821 44.000 12.23 8.81 44.89 3.16
5683 7111 4.695455 CCCATACAGTAACAACTGAACTGG 59.305 45.833 12.23 13.13 43.91 4.00
5684 7112 4.695455 CCATACAGTAACAACTGAACTGGG 59.305 45.833 12.23 3.21 43.91 4.45
5685 7113 2.572290 ACAGTAACAACTGAACTGGGC 58.428 47.619 12.23 0.00 43.91 5.36
5774 7203 1.485895 AGGCTCTCTTTCATCTGCCTC 59.514 52.381 0.00 0.00 46.53 4.70
5775 7204 1.485895 GGCTCTCTTTCATCTGCCTCT 59.514 52.381 0.00 0.00 37.58 3.69
5778 7207 4.559153 GCTCTCTTTCATCTGCCTCTATC 58.441 47.826 0.00 0.00 0.00 2.08
5822 7251 2.754946 TGTAACGAAGCCGGAAGAAT 57.245 45.000 5.05 0.00 40.78 2.40
5881 7310 0.386352 CAGCGTGCATGTGAAACTGG 60.386 55.000 7.93 0.00 38.04 4.00
5956 7403 1.667236 CTGCATGACCGGAGCATAAA 58.333 50.000 9.46 2.36 37.68 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.403252 ATCACGATCCTCCAACCAAC 57.597 50.000 0.00 0.00 0.00 3.77
61 62 5.047377 TGACCAAAACATCCTTATCCAAAGC 60.047 40.000 0.00 0.00 0.00 3.51
83 84 0.669619 TCACGCTCTTTGTACGGTGA 59.330 50.000 0.00 0.00 0.00 4.02
87 88 3.242518 TCAAGATCACGCTCTTTGTACG 58.757 45.455 0.00 0.00 33.18 3.67
88 89 3.061429 GCTCAAGATCACGCTCTTTGTAC 59.939 47.826 0.00 0.00 33.18 2.90
91 92 2.344950 AGCTCAAGATCACGCTCTTTG 58.655 47.619 0.00 0.00 33.18 2.77
97 98 2.197577 GGTTAGAGCTCAAGATCACGC 58.802 52.381 17.77 0.00 31.88 5.34
98 99 3.510388 TGGTTAGAGCTCAAGATCACG 57.490 47.619 17.77 0.00 31.88 4.35
109 110 4.868171 TCATTACACGATGTTGGTTAGAGC 59.132 41.667 0.00 0.00 0.00 4.09
185 186 7.706607 AGAAAGTTGTAAAATCTTTGGCAACTC 59.293 33.333 17.57 11.10 41.08 3.01
190 191 6.206498 ACGAGAAAGTTGTAAAATCTTTGGC 58.794 36.000 0.00 0.00 32.59 4.52
226 227 5.460646 AGCAATTATGGAAAAACAGACGTG 58.539 37.500 0.00 0.00 0.00 4.49
229 230 8.593492 AAGAAAGCAATTATGGAAAAACAGAC 57.407 30.769 0.00 0.00 0.00 3.51
233 234 9.650371 GTTCAAAGAAAGCAATTATGGAAAAAC 57.350 29.630 0.00 0.00 0.00 2.43
234 235 8.835439 GGTTCAAAGAAAGCAATTATGGAAAAA 58.165 29.630 0.00 0.00 0.00 1.94
248 249 5.106673 GGTTCGGTCATAGGTTCAAAGAAAG 60.107 44.000 0.00 0.00 0.00 2.62
256 257 3.187842 GTGTTTGGTTCGGTCATAGGTTC 59.812 47.826 0.00 0.00 0.00 3.62
261 262 4.035792 CAGTTTGTGTTTGGTTCGGTCATA 59.964 41.667 0.00 0.00 0.00 2.15
265 266 2.438411 TCAGTTTGTGTTTGGTTCGGT 58.562 42.857 0.00 0.00 0.00 4.69
276 277 3.708563 AACGGGTTTCATCAGTTTGTG 57.291 42.857 0.00 0.00 0.00 3.33
278 279 3.252215 TGCTAACGGGTTTCATCAGTTTG 59.748 43.478 0.00 0.00 0.00 2.93
280 281 3.134574 TGCTAACGGGTTTCATCAGTT 57.865 42.857 0.00 0.00 0.00 3.16
281 282 2.851263 TGCTAACGGGTTTCATCAGT 57.149 45.000 0.00 0.00 0.00 3.41
283 284 2.227865 GCTTTGCTAACGGGTTTCATCA 59.772 45.455 0.00 0.00 0.00 3.07
284 285 2.415491 GGCTTTGCTAACGGGTTTCATC 60.415 50.000 0.00 0.00 0.00 2.92
286 287 0.955905 GGCTTTGCTAACGGGTTTCA 59.044 50.000 0.00 0.00 0.00 2.69
287 288 0.955905 TGGCTTTGCTAACGGGTTTC 59.044 50.000 0.00 0.00 0.00 2.78
288 289 1.404843 TTGGCTTTGCTAACGGGTTT 58.595 45.000 0.00 0.00 0.00 3.27
289 290 1.404843 TTTGGCTTTGCTAACGGGTT 58.595 45.000 0.00 0.00 0.00 4.11
290 291 1.627864 ATTTGGCTTTGCTAACGGGT 58.372 45.000 0.00 0.00 0.00 5.28
291 292 2.288763 ACAATTTGGCTTTGCTAACGGG 60.289 45.455 0.78 0.00 0.00 5.28
292 293 2.986479 GACAATTTGGCTTTGCTAACGG 59.014 45.455 0.78 0.00 0.00 4.44
293 294 2.986479 GGACAATTTGGCTTTGCTAACG 59.014 45.455 1.54 0.00 0.00 3.18
294 295 3.988819 TGGACAATTTGGCTTTGCTAAC 58.011 40.909 1.54 0.00 0.00 2.34
295 296 4.679373 TTGGACAATTTGGCTTTGCTAA 57.321 36.364 1.54 0.00 0.00 3.09
296 297 4.888326 ATTGGACAATTTGGCTTTGCTA 57.112 36.364 1.54 0.00 0.00 3.49
310 311 0.975135 TCGGGTTCGGTAATTGGACA 59.025 50.000 0.00 0.00 36.95 4.02
318 319 2.229784 GTCTCTTTCTTCGGGTTCGGTA 59.770 50.000 0.00 0.00 36.95 4.02
320 321 1.711206 GTCTCTTTCTTCGGGTTCGG 58.289 55.000 0.00 0.00 36.95 4.30
323 324 1.046204 ACCGTCTCTTTCTTCGGGTT 58.954 50.000 7.34 0.00 46.06 4.11
335 336 3.587797 TCAACTATCACCAACCGTCTC 57.412 47.619 0.00 0.00 0.00 3.36
336 337 4.253685 CAATCAACTATCACCAACCGTCT 58.746 43.478 0.00 0.00 0.00 4.18
337 338 3.181510 GCAATCAACTATCACCAACCGTC 60.182 47.826 0.00 0.00 0.00 4.79
338 339 2.747446 GCAATCAACTATCACCAACCGT 59.253 45.455 0.00 0.00 0.00 4.83
339 340 3.009723 AGCAATCAACTATCACCAACCG 58.990 45.455 0.00 0.00 0.00 4.44
341 342 3.758554 ACCAGCAATCAACTATCACCAAC 59.241 43.478 0.00 0.00 0.00 3.77
342 343 4.032960 ACCAGCAATCAACTATCACCAA 57.967 40.909 0.00 0.00 0.00 3.67
343 344 3.719268 ACCAGCAATCAACTATCACCA 57.281 42.857 0.00 0.00 0.00 4.17
344 345 5.391312 AAAACCAGCAATCAACTATCACC 57.609 39.130 0.00 0.00 0.00 4.02
345 346 7.761409 TCATAAAACCAGCAATCAACTATCAC 58.239 34.615 0.00 0.00 0.00 3.06
381 382 7.066887 TGTCAATGTAACAATTATCGGCAAGAT 59.933 33.333 0.00 0.00 43.19 2.40
393 394 9.791820 CACAATACATCATGTCAATGTAACAAT 57.208 29.630 9.14 0.00 41.54 2.71
395 396 7.121020 AGCACAATACATCATGTCAATGTAACA 59.879 33.333 9.14 0.00 41.54 2.41
402 403 5.247862 AGACAGCACAATACATCATGTCAA 58.752 37.500 0.00 0.00 38.38 3.18
405 406 7.870509 AATTAGACAGCACAATACATCATGT 57.129 32.000 0.00 0.00 0.00 3.21
416 417 6.547880 TCCCTAAAAACAAATTAGACAGCACA 59.452 34.615 0.00 0.00 33.16 4.57
417 418 6.977213 TCCCTAAAAACAAATTAGACAGCAC 58.023 36.000 0.00 0.00 33.16 4.40
420 421 7.665974 AGTCCTCCCTAAAAACAAATTAGACAG 59.334 37.037 0.00 0.00 33.16 3.51
427 428 9.421399 CCATAATAGTCCTCCCTAAAAACAAAT 57.579 33.333 0.00 0.00 0.00 2.32
431 432 9.945904 CTATCCATAATAGTCCTCCCTAAAAAC 57.054 37.037 0.00 0.00 33.86 2.43
432 433 8.603304 GCTATCCATAATAGTCCTCCCTAAAAA 58.397 37.037 0.00 0.00 39.74 1.94
433 434 7.962003 AGCTATCCATAATAGTCCTCCCTAAAA 59.038 37.037 0.00 0.00 39.74 1.52
434 435 7.488205 AGCTATCCATAATAGTCCTCCCTAAA 58.512 38.462 0.00 0.00 39.74 1.85
435 436 7.057732 AGCTATCCATAATAGTCCTCCCTAA 57.942 40.000 0.00 0.00 39.74 2.69
478 479 2.831685 AACTCGTAGACAATGCACCA 57.168 45.000 0.00 0.00 0.00 4.17
480 481 5.840940 ACTAAAACTCGTAGACAATGCAC 57.159 39.130 0.00 0.00 0.00 4.57
482 483 8.181487 TGATTACTAAAACTCGTAGACAATGC 57.819 34.615 0.00 0.00 0.00 3.56
486 487 8.102800 TGTCTGATTACTAAAACTCGTAGACA 57.897 34.615 0.00 0.00 0.00 3.41
487 488 8.961294 TTGTCTGATTACTAAAACTCGTAGAC 57.039 34.615 0.00 0.00 0.00 2.59
496 497 8.982723 AGCCTCTAGATTGTCTGATTACTAAAA 58.017 33.333 0.00 0.00 0.00 1.52
497 498 8.540507 AGCCTCTAGATTGTCTGATTACTAAA 57.459 34.615 0.00 0.00 0.00 1.85
510 511 1.268794 CGTGGACGAGCCTCTAGATTG 60.269 57.143 0.00 0.00 43.02 2.67
529 530 2.031420 TCCGCTAGTTTATCGATGGACG 60.031 50.000 8.54 2.30 44.09 4.79
530 531 3.637998 TCCGCTAGTTTATCGATGGAC 57.362 47.619 8.54 6.52 0.00 4.02
531 532 4.659111 TTTCCGCTAGTTTATCGATGGA 57.341 40.909 8.54 0.00 0.00 3.41
532 533 7.596749 AATATTTCCGCTAGTTTATCGATGG 57.403 36.000 8.54 0.00 0.00 3.51
533 534 9.530129 GAAAATATTTCCGCTAGTTTATCGATG 57.470 33.333 8.54 0.00 0.00 3.84
534 535 9.268268 TGAAAATATTTCCGCTAGTTTATCGAT 57.732 29.630 2.16 2.16 0.00 3.59
537 538 9.651718 CACTGAAAATATTTCCGCTAGTTTATC 57.348 33.333 0.10 0.00 0.00 1.75
554 555 5.220912 CCATCATACGACATGCACTGAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
559 560 1.869132 CCCATCATACGACATGCACTG 59.131 52.381 0.00 0.00 0.00 3.66
560 561 1.762370 TCCCATCATACGACATGCACT 59.238 47.619 0.00 0.00 0.00 4.40
563 564 2.611473 CCTCTCCCATCATACGACATGC 60.611 54.545 0.00 0.00 0.00 4.06
564 565 2.028658 CCCTCTCCCATCATACGACATG 60.029 54.545 0.00 0.00 0.00 3.21
566 567 1.216930 TCCCTCTCCCATCATACGACA 59.783 52.381 0.00 0.00 0.00 4.35
567 568 1.996798 TCCCTCTCCCATCATACGAC 58.003 55.000 0.00 0.00 0.00 4.34
568 569 2.529632 CATCCCTCTCCCATCATACGA 58.470 52.381 0.00 0.00 0.00 3.43
569 570 1.552337 CCATCCCTCTCCCATCATACG 59.448 57.143 0.00 0.00 0.00 3.06
570 571 1.280421 GCCATCCCTCTCCCATCATAC 59.720 57.143 0.00 0.00 0.00 2.39
571 572 1.132430 TGCCATCCCTCTCCCATCATA 60.132 52.381 0.00 0.00 0.00 2.15
572 573 0.402419 TGCCATCCCTCTCCCATCAT 60.402 55.000 0.00 0.00 0.00 2.45
573 574 0.624206 TTGCCATCCCTCTCCCATCA 60.624 55.000 0.00 0.00 0.00 3.07
589 590 2.035321 TCATCAAAAGGGGTTCGTTTGC 59.965 45.455 0.00 0.00 42.09 3.68
643 644 9.705290 AGACGGCAATCTTTTATTTAAAATTGT 57.295 25.926 0.00 0.00 34.95 2.71
659 660 4.092091 CAGTTTCTGTTAGAGACGGCAATC 59.908 45.833 0.00 0.00 34.82 2.67
672 673 5.078411 AGAGCGATATGACAGTTTCTGTT 57.922 39.130 3.91 0.00 45.44 3.16
701 702 2.483014 TTAGTTGTGGGAATGACGGG 57.517 50.000 0.00 0.00 0.00 5.28
703 704 5.106830 GGTAGTTTTAGTTGTGGGAATGACG 60.107 44.000 0.00 0.00 0.00 4.35
709 710 3.746940 GCTGGTAGTTTTAGTTGTGGGA 58.253 45.455 0.00 0.00 0.00 4.37
739 741 1.476085 CATAAAGGGTGGCATTTGCGA 59.524 47.619 0.00 0.00 43.26 5.10
754 756 5.006844 TGTGAACTTTCGCTTTCGTCATAAA 59.993 36.000 4.28 0.00 38.47 1.40
767 769 7.461107 TGTTTCTCTTAACTTGTGAACTTTCG 58.539 34.615 0.00 0.00 0.00 3.46
768 770 9.278734 CTTGTTTCTCTTAACTTGTGAACTTTC 57.721 33.333 0.00 0.00 0.00 2.62
769 771 9.010029 TCTTGTTTCTCTTAACTTGTGAACTTT 57.990 29.630 0.00 0.00 0.00 2.66
770 772 8.561738 TCTTGTTTCTCTTAACTTGTGAACTT 57.438 30.769 0.00 0.00 0.00 2.66
771 773 8.561738 TTCTTGTTTCTCTTAACTTGTGAACT 57.438 30.769 0.00 0.00 0.00 3.01
773 775 8.561738 ACTTCTTGTTTCTCTTAACTTGTGAA 57.438 30.769 0.00 0.00 0.00 3.18
774 776 8.041323 AGACTTCTTGTTTCTCTTAACTTGTGA 58.959 33.333 0.00 0.00 0.00 3.58
776 778 8.794335 AAGACTTCTTGTTTCTCTTAACTTGT 57.206 30.769 0.00 0.00 34.38 3.16
852 854 9.797556 TGTTGACAATGTATGTACAGTAGTATC 57.202 33.333 0.33 0.00 44.12 2.24
924 926 9.007901 ACCTTATCTTTCTCACATTTCTTTCTG 57.992 33.333 0.00 0.00 0.00 3.02
960 962 1.973812 GGGAGAAGTTGTGGCTGGC 60.974 63.158 0.00 0.00 0.00 4.85
1068 1071 3.136750 CGAGAGGAGCATGAGGGG 58.863 66.667 0.00 0.00 0.00 4.79
1242 1245 4.507335 CCCATCATCCCCTGTTCGATTATT 60.507 45.833 0.00 0.00 0.00 1.40
1255 1258 3.754965 TCGAATTTCATCCCATCATCCC 58.245 45.455 0.00 0.00 0.00 3.85
1257 1260 4.022849 GGGTTCGAATTTCATCCCATCATC 60.023 45.833 13.02 0.00 35.43 2.92
1262 1266 1.356059 TGGGGTTCGAATTTCATCCCA 59.644 47.619 18.08 10.77 40.29 4.37
1364 1368 1.054406 GGATTGATCAGGGTCGGGGA 61.054 60.000 0.00 0.00 0.00 4.81
1368 1372 0.877649 CGCAGGATTGATCAGGGTCG 60.878 60.000 0.00 0.00 0.00 4.79
1374 1378 2.037641 CAGGGATACGCAGGATTGATCA 59.962 50.000 0.00 0.00 37.60 2.92
1375 1379 2.300152 TCAGGGATACGCAGGATTGATC 59.700 50.000 0.00 0.00 37.60 2.92
1387 1391 8.169977 TGCATCTTATTCAAAATCAGGGATAC 57.830 34.615 0.00 0.00 0.00 2.24
1418 1960 8.385111 GTCGAGATTAGTACTAGCTAAGCTATG 58.615 40.741 2.23 5.05 44.59 2.23
1478 2020 6.643770 GTGTGCATGGATAATGAATGAAATCC 59.356 38.462 0.00 0.00 38.72 3.01
1543 2086 3.118531 ACATTAGACTCCATGCCTCCTT 58.881 45.455 0.00 0.00 0.00 3.36
1568 2111 2.904434 GGGGAAACTGGTCTACTTCTGA 59.096 50.000 0.00 0.00 0.00 3.27
1582 2125 6.015095 ACATTTGAAGATTCTTCTGGGGAAAC 60.015 38.462 23.29 0.00 30.72 2.78
1598 2141 6.073058 TCAGAAGACGGATGAAACATTTGAAG 60.073 38.462 0.00 0.00 0.00 3.02
1602 2145 5.308825 ACTCAGAAGACGGATGAAACATTT 58.691 37.500 0.00 0.00 0.00 2.32
1614 2157 1.983972 AGCGCTAAACTCAGAAGACG 58.016 50.000 8.99 0.00 0.00 4.18
1620 2163 3.867493 TGATCATCAAGCGCTAAACTCAG 59.133 43.478 12.05 0.00 0.00 3.35
1634 2177 3.002965 GCGCATGAATCAGTTGATCATCA 59.997 43.478 0.30 1.93 32.75 3.07
1635 2178 3.002965 TGCGCATGAATCAGTTGATCATC 59.997 43.478 5.66 0.00 32.75 2.92
1636 2179 2.946990 TGCGCATGAATCAGTTGATCAT 59.053 40.909 5.66 0.00 32.75 2.45
1678 2221 6.915843 CGGTTATAATTTACCAAGTCAATGGC 59.084 38.462 0.00 0.00 44.75 4.40
1780 2328 4.264083 ACCCAACAGAACCTCAATCATGAT 60.264 41.667 1.18 1.18 34.37 2.45
1800 2348 8.887036 AGAACAATTTGAGTTTGAAATAACCC 57.113 30.769 2.79 0.00 0.00 4.11
1866 2418 9.746711 GCGAATTTATCTATACAATGTCATCAC 57.253 33.333 0.00 0.00 0.00 3.06
2135 2692 3.117093 TGATCTAGGATCTTCTCGGGGTT 60.117 47.826 8.66 0.00 0.00 4.11
2410 3004 8.730680 AGATAACACACTCACATTTCCATTTAC 58.269 33.333 0.00 0.00 0.00 2.01
2763 3375 6.945938 AGTTACATCCTACACTGTAGCTAG 57.054 41.667 10.36 5.00 37.55 3.42
3226 4103 6.128172 GCTATTTTGCTCTCAAGAAGCTACAA 60.128 38.462 0.00 0.00 33.75 2.41
3327 4204 3.370840 TGAAGTAGCAGATGGGCAAAT 57.629 42.857 0.00 0.00 35.83 2.32
3332 4209 4.818546 CCAAACTATGAAGTAGCAGATGGG 59.181 45.833 0.00 0.00 33.75 4.00
3531 4521 3.258123 GTCCATAGCCACCACAAAAACAT 59.742 43.478 0.00 0.00 0.00 2.71
3621 4850 4.452455 ACTGAGATGCTTTAACTTGAACCG 59.548 41.667 0.00 0.00 0.00 4.44
3650 4879 3.197766 TGCTTAGTATGGCAGCTTGTAGT 59.802 43.478 0.00 0.00 34.42 2.73
3651 4880 3.797039 TGCTTAGTATGGCAGCTTGTAG 58.203 45.455 0.00 0.00 34.42 2.74
3709 5040 1.142097 GGTTCCAGCCTCTACTCGC 59.858 63.158 0.00 0.00 0.00 5.03
3794 5125 2.416431 GCCACAGCCAGCAATAAAAGAG 60.416 50.000 0.00 0.00 0.00 2.85
3905 5287 4.233123 TCTCGTGTTCGAAGTTATGTGT 57.767 40.909 0.00 0.00 45.61 3.72
3985 5367 2.079925 GGTCATGCTCAGAACAACTCC 58.920 52.381 0.00 0.00 0.00 3.85
4097 5501 4.397481 TGAGATATCACTTGCCACTGAG 57.603 45.455 5.32 0.00 0.00 3.35
4102 5506 4.776435 TTCCATGAGATATCACTTGCCA 57.224 40.909 5.32 0.00 0.00 4.92
4398 5818 7.186804 ACAGTTTTGAGTACAGAAAAATGACG 58.813 34.615 24.53 9.02 34.88 4.35
4408 5828 8.283291 GGAAGTCAATTACAGTTTTGAGTACAG 58.717 37.037 0.00 0.00 35.09 2.74
4415 5835 9.796120 TTAACTTGGAAGTCAATTACAGTTTTG 57.204 29.630 0.00 0.00 38.57 2.44
4422 5842 8.410912 ACAGGTTTTAACTTGGAAGTCAATTAC 58.589 33.333 9.17 0.00 39.98 1.89
4433 5853 7.540299 TCTAAAACACACAGGTTTTAACTTGG 58.460 34.615 9.17 2.01 46.63 3.61
4507 5927 9.952188 GTTTGCATATTTTACTCTATTTCTCCC 57.048 33.333 0.00 0.00 0.00 4.30
4522 5942 7.870954 CAGCTTATGATCCATGTTTGCATATTT 59.129 33.333 0.00 0.00 33.30 1.40
4581 6003 8.383175 AGTATGGAATGAAAAGGAGACACTTAA 58.617 33.333 0.00 0.00 0.00 1.85
4594 6016 9.797642 ATTATAGTCATGCAGTATGGAATGAAA 57.202 29.630 0.00 0.00 42.43 2.69
4779 6201 3.245948 ACTCTCTTCTGGGGTTCTCTGAT 60.246 47.826 0.00 0.00 0.00 2.90
4960 6383 2.040545 AGGCTCTCGGCTAAGCTCTATA 59.959 50.000 0.00 0.00 45.31 1.31
5043 6466 4.320546 TTCAACTGGATCATTGGGTCAT 57.679 40.909 0.00 0.00 0.00 3.06
5051 6474 5.446860 AGCATCAGAATTCAACTGGATCAT 58.553 37.500 8.44 0.00 36.22 2.45
5078 6501 1.347817 CTCCTGACTTGCGTTCGAGC 61.348 60.000 0.00 0.00 37.71 5.03
5104 6527 6.407202 GGATGTACAATCAGGACAGTAAGTT 58.593 40.000 0.00 0.00 0.00 2.66
5111 6534 3.181479 GCTACGGATGTACAATCAGGACA 60.181 47.826 0.00 0.00 0.00 4.02
5115 6538 3.319405 AGGAGCTACGGATGTACAATCAG 59.681 47.826 0.00 2.02 0.00 2.90
5129 6552 3.502595 GTCCAAACTCCAAAAGGAGCTAC 59.497 47.826 11.29 0.00 39.42 3.58
5132 6555 2.554462 GAGTCCAAACTCCAAAAGGAGC 59.446 50.000 11.29 0.00 45.26 4.70
5165 6588 5.812642 AGCACCATTAATTACGAACTGAGAG 59.187 40.000 0.00 0.00 0.00 3.20
5166 6589 5.730550 AGCACCATTAATTACGAACTGAGA 58.269 37.500 0.00 0.00 0.00 3.27
5197 6620 4.891756 ACATCTTCCTGGCAATATTTGAGG 59.108 41.667 0.00 0.00 0.00 3.86
5243 6666 3.820557 ACTTTGTTACTGTGTGGAGCAT 58.179 40.909 0.00 0.00 0.00 3.79
5293 6721 1.246737 CCTGAGAACCTGCCCAAAGC 61.247 60.000 0.00 0.00 44.14 3.51
5296 6724 1.281867 CATACCTGAGAACCTGCCCAA 59.718 52.381 0.00 0.00 0.00 4.12
5317 6745 1.964552 TCGATCTCTACCCGAGGTTC 58.035 55.000 0.72 0.00 40.30 3.62
5328 6756 4.384208 CCACCTAAAATGGGTTCGATCTCT 60.384 45.833 0.00 0.00 34.44 3.10
5329 6757 3.877508 CCACCTAAAATGGGTTCGATCTC 59.122 47.826 0.00 0.00 34.44 2.75
5330 6758 3.521937 TCCACCTAAAATGGGTTCGATCT 59.478 43.478 0.00 0.00 37.85 2.75
5331 6759 3.881220 TCCACCTAAAATGGGTTCGATC 58.119 45.455 0.00 0.00 37.85 3.69
5332 6760 4.519906 ATCCACCTAAAATGGGTTCGAT 57.480 40.909 0.00 0.00 37.85 3.59
5333 6761 4.681244 CGTATCCACCTAAAATGGGTTCGA 60.681 45.833 0.00 0.00 42.02 3.71
5334 6762 3.558418 CGTATCCACCTAAAATGGGTTCG 59.442 47.826 0.00 0.00 35.24 3.95
5335 6763 4.573607 GTCGTATCCACCTAAAATGGGTTC 59.426 45.833 0.00 0.00 37.85 3.62
5336 6764 4.520179 GTCGTATCCACCTAAAATGGGTT 58.480 43.478 0.00 0.00 37.85 4.11
5337 6765 3.118149 GGTCGTATCCACCTAAAATGGGT 60.118 47.826 0.00 0.00 37.85 4.51
5338 6766 3.473625 GGTCGTATCCACCTAAAATGGG 58.526 50.000 0.00 0.00 37.85 4.00
5339 6767 3.473625 GGGTCGTATCCACCTAAAATGG 58.526 50.000 0.00 0.00 38.71 3.16
5340 6768 3.128349 CGGGTCGTATCCACCTAAAATG 58.872 50.000 0.00 0.00 33.96 2.32
5341 6769 2.484241 GCGGGTCGTATCCACCTAAAAT 60.484 50.000 0.00 0.00 33.96 1.82
5342 6770 1.134729 GCGGGTCGTATCCACCTAAAA 60.135 52.381 0.00 0.00 33.96 1.52
5343 6771 0.461135 GCGGGTCGTATCCACCTAAA 59.539 55.000 0.00 0.00 33.96 1.85
5344 6772 1.394266 GGCGGGTCGTATCCACCTAA 61.394 60.000 0.00 0.00 33.96 2.69
5345 6773 1.829533 GGCGGGTCGTATCCACCTA 60.830 63.158 0.00 0.00 33.96 3.08
5346 6774 3.152400 GGCGGGTCGTATCCACCT 61.152 66.667 0.00 0.00 33.96 4.00
5347 6775 1.466025 TATGGCGGGTCGTATCCACC 61.466 60.000 0.00 0.00 0.00 4.61
5348 6776 0.606604 ATATGGCGGGTCGTATCCAC 59.393 55.000 0.00 0.00 0.00 4.02
5349 6777 1.001520 CAATATGGCGGGTCGTATCCA 59.998 52.381 0.00 0.00 0.00 3.41
5350 6778 1.274167 TCAATATGGCGGGTCGTATCC 59.726 52.381 0.00 0.00 0.00 2.59
5351 6779 2.029290 ACTCAATATGGCGGGTCGTATC 60.029 50.000 0.00 0.00 0.00 2.24
5352 6780 1.968493 ACTCAATATGGCGGGTCGTAT 59.032 47.619 0.00 0.00 0.00 3.06
5353 6781 1.405872 ACTCAATATGGCGGGTCGTA 58.594 50.000 0.00 0.00 0.00 3.43
5354 6782 0.539986 AACTCAATATGGCGGGTCGT 59.460 50.000 0.00 0.00 0.00 4.34
5355 6783 1.663695 AAACTCAATATGGCGGGTCG 58.336 50.000 0.00 0.00 0.00 4.79
5356 6784 3.751698 GGATAAACTCAATATGGCGGGTC 59.248 47.826 0.00 0.00 0.00 4.46
5357 6785 3.137544 TGGATAAACTCAATATGGCGGGT 59.862 43.478 0.00 0.00 0.00 5.28
5358 6786 3.750371 TGGATAAACTCAATATGGCGGG 58.250 45.455 0.00 0.00 0.00 6.13
5359 6787 5.964958 ATTGGATAAACTCAATATGGCGG 57.035 39.130 0.00 0.00 32.49 6.13
5360 6788 9.559958 GAAATATTGGATAAACTCAATATGGCG 57.440 33.333 8.67 0.00 42.39 5.69
5361 6789 9.860898 GGAAATATTGGATAAACTCAATATGGC 57.139 33.333 8.67 5.26 42.39 4.40
5368 6796 9.753674 AGTTCAAGGAAATATTGGATAAACTCA 57.246 29.630 0.00 0.00 0.00 3.41
5370 6798 8.470002 GCAGTTCAAGGAAATATTGGATAAACT 58.530 33.333 0.00 0.00 0.00 2.66
5371 6799 8.470002 AGCAGTTCAAGGAAATATTGGATAAAC 58.530 33.333 0.00 0.00 0.00 2.01
5372 6800 8.593945 AGCAGTTCAAGGAAATATTGGATAAA 57.406 30.769 0.00 0.00 0.00 1.40
5373 6801 9.693739 TTAGCAGTTCAAGGAAATATTGGATAA 57.306 29.630 0.00 0.00 0.00 1.75
5374 6802 9.693739 TTTAGCAGTTCAAGGAAATATTGGATA 57.306 29.630 0.00 0.00 0.00 2.59
5375 6803 8.593945 TTTAGCAGTTCAAGGAAATATTGGAT 57.406 30.769 0.00 0.00 0.00 3.41
5376 6804 8.303876 GTTTTAGCAGTTCAAGGAAATATTGGA 58.696 33.333 0.00 0.00 0.00 3.53
5377 6805 7.273381 CGTTTTAGCAGTTCAAGGAAATATTGG 59.727 37.037 0.00 0.00 0.00 3.16
5378 6806 7.807907 ACGTTTTAGCAGTTCAAGGAAATATTG 59.192 33.333 0.00 0.00 0.00 1.90
5379 6807 7.882179 ACGTTTTAGCAGTTCAAGGAAATATT 58.118 30.769 0.00 0.00 0.00 1.28
5380 6808 7.174253 TGACGTTTTAGCAGTTCAAGGAAATAT 59.826 33.333 0.00 0.00 0.00 1.28
5381 6809 6.483974 TGACGTTTTAGCAGTTCAAGGAAATA 59.516 34.615 0.00 0.00 0.00 1.40
5382 6810 5.298276 TGACGTTTTAGCAGTTCAAGGAAAT 59.702 36.000 0.00 0.00 0.00 2.17
5383 6811 4.636648 TGACGTTTTAGCAGTTCAAGGAAA 59.363 37.500 0.00 0.00 0.00 3.13
5384 6812 4.193090 TGACGTTTTAGCAGTTCAAGGAA 58.807 39.130 0.00 0.00 0.00 3.36
5385 6813 3.799366 TGACGTTTTAGCAGTTCAAGGA 58.201 40.909 0.00 0.00 0.00 3.36
5386 6814 4.749245 ATGACGTTTTAGCAGTTCAAGG 57.251 40.909 0.00 0.00 0.00 3.61
5411 6839 9.305169 TGAGGAGGAGGGAGTATATACATAATA 57.695 37.037 15.18 0.00 0.00 0.98
5412 6840 8.188501 TGAGGAGGAGGGAGTATATACATAAT 57.811 38.462 15.18 0.00 0.00 1.28
5413 6841 7.599353 TGAGGAGGAGGGAGTATATACATAA 57.401 40.000 15.18 0.00 0.00 1.90
5414 6842 7.789128 ATGAGGAGGAGGGAGTATATACATA 57.211 40.000 15.18 0.00 0.00 2.29
5415 6843 6.682622 ATGAGGAGGAGGGAGTATATACAT 57.317 41.667 15.18 0.50 0.00 2.29
5416 6844 7.599353 TTATGAGGAGGAGGGAGTATATACA 57.401 40.000 15.18 0.00 0.00 2.29
5421 6849 9.086059 TCTTATATTATGAGGAGGAGGGAGTAT 57.914 37.037 0.00 0.00 0.00 2.12
5422 6850 8.478214 TCTTATATTATGAGGAGGAGGGAGTA 57.522 38.462 0.00 0.00 0.00 2.59
5423 6851 7.020168 ACTCTTATATTATGAGGAGGAGGGAGT 59.980 40.741 0.00 0.00 35.08 3.85
5424 6852 7.341769 CACTCTTATATTATGAGGAGGAGGGAG 59.658 44.444 0.00 0.00 35.08 4.30
5425 6853 7.185565 CACTCTTATATTATGAGGAGGAGGGA 58.814 42.308 0.00 0.00 35.08 4.20
5426 6854 6.957020 ACACTCTTATATTATGAGGAGGAGGG 59.043 42.308 0.00 0.00 35.08 4.30
5427 6855 8.429237 AACACTCTTATATTATGAGGAGGAGG 57.571 38.462 0.00 0.00 35.08 4.30
5473 6901 7.672122 ACGGAGGGAGTATAGAAGTATTTTT 57.328 36.000 0.00 0.00 0.00 1.94
5474 6902 7.201983 GGAACGGAGGGAGTATAGAAGTATTTT 60.202 40.741 0.00 0.00 0.00 1.82
5475 6903 6.267242 GGAACGGAGGGAGTATAGAAGTATTT 59.733 42.308 0.00 0.00 0.00 1.40
5476 6904 5.774184 GGAACGGAGGGAGTATAGAAGTATT 59.226 44.000 0.00 0.00 0.00 1.89
5477 6905 5.074790 AGGAACGGAGGGAGTATAGAAGTAT 59.925 44.000 0.00 0.00 0.00 2.12
5478 6906 4.414846 AGGAACGGAGGGAGTATAGAAGTA 59.585 45.833 0.00 0.00 0.00 2.24
5479 6907 3.204831 AGGAACGGAGGGAGTATAGAAGT 59.795 47.826 0.00 0.00 0.00 3.01
5480 6908 3.834938 AGGAACGGAGGGAGTATAGAAG 58.165 50.000 0.00 0.00 0.00 2.85
5481 6909 3.967467 AGGAACGGAGGGAGTATAGAA 57.033 47.619 0.00 0.00 0.00 2.10
5482 6910 5.393068 TTTAGGAACGGAGGGAGTATAGA 57.607 43.478 0.00 0.00 0.00 1.98
5483 6911 7.957992 ATATTTAGGAACGGAGGGAGTATAG 57.042 40.000 0.00 0.00 0.00 1.31
5484 6912 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
5485 6913 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
5486 6914 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5487 6915 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5488 6916 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5489 6917 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5490 6918 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5491 6919 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
5492 6920 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
5493 6921 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
5494 6922 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
5516 6944 6.656632 TGTGATCTATAGTGGAATGTCTCC 57.343 41.667 0.00 0.00 45.64 3.71
5517 6945 7.965655 CGTATGTGATCTATAGTGGAATGTCTC 59.034 40.741 0.00 0.00 0.00 3.36
5518 6946 7.094162 CCGTATGTGATCTATAGTGGAATGTCT 60.094 40.741 0.00 0.00 0.00 3.41
5519 6947 7.030165 CCGTATGTGATCTATAGTGGAATGTC 58.970 42.308 0.00 0.00 0.00 3.06
5520 6948 6.719829 TCCGTATGTGATCTATAGTGGAATGT 59.280 38.462 0.00 0.00 0.00 2.71
5521 6949 7.094162 ACTCCGTATGTGATCTATAGTGGAATG 60.094 40.741 0.00 0.00 0.00 2.67
5522 6950 6.948886 ACTCCGTATGTGATCTATAGTGGAAT 59.051 38.462 0.00 0.00 0.00 3.01
5523 6951 6.304624 ACTCCGTATGTGATCTATAGTGGAA 58.695 40.000 0.00 0.00 0.00 3.53
5524 6952 5.877491 ACTCCGTATGTGATCTATAGTGGA 58.123 41.667 0.00 3.52 0.00 4.02
5525 6953 7.683437 TTACTCCGTATGTGATCTATAGTGG 57.317 40.000 0.00 0.00 0.00 4.00
5531 6959 9.476202 CATTCATTTTACTCCGTATGTGATCTA 57.524 33.333 0.00 0.00 0.00 1.98
5532 6960 8.204160 TCATTCATTTTACTCCGTATGTGATCT 58.796 33.333 0.00 0.00 0.00 2.75
5533 6961 8.365399 TCATTCATTTTACTCCGTATGTGATC 57.635 34.615 0.00 0.00 0.00 2.92
5534 6962 8.612619 GTTCATTCATTTTACTCCGTATGTGAT 58.387 33.333 0.00 0.00 0.00 3.06
5535 6963 7.822334 AGTTCATTCATTTTACTCCGTATGTGA 59.178 33.333 0.00 0.00 0.00 3.58
5536 6964 7.974675 AGTTCATTCATTTTACTCCGTATGTG 58.025 34.615 0.00 0.00 0.00 3.21
5537 6965 9.095065 GTAGTTCATTCATTTTACTCCGTATGT 57.905 33.333 0.00 0.00 0.00 2.29
5538 6966 9.093970 TGTAGTTCATTCATTTTACTCCGTATG 57.906 33.333 0.00 0.00 0.00 2.39
5539 6967 9.095065 GTGTAGTTCATTCATTTTACTCCGTAT 57.905 33.333 0.00 0.00 0.00 3.06
5540 6968 8.308931 AGTGTAGTTCATTCATTTTACTCCGTA 58.691 33.333 0.00 0.00 0.00 4.02
5541 6969 7.159372 AGTGTAGTTCATTCATTTTACTCCGT 58.841 34.615 0.00 0.00 0.00 4.69
5542 6970 7.545965 AGAGTGTAGTTCATTCATTTTACTCCG 59.454 37.037 0.00 0.00 35.62 4.63
5543 6971 8.779354 AGAGTGTAGTTCATTCATTTTACTCC 57.221 34.615 0.00 0.00 35.62 3.85
5549 6977 9.846248 GCATTTTAGAGTGTAGTTCATTCATTT 57.154 29.630 0.00 0.00 35.62 2.32
5550 6978 9.013229 TGCATTTTAGAGTGTAGTTCATTCATT 57.987 29.630 0.00 0.00 35.62 2.57
5551 6979 8.565896 TGCATTTTAGAGTGTAGTTCATTCAT 57.434 30.769 0.00 0.00 35.62 2.57
5552 6980 7.977789 TGCATTTTAGAGTGTAGTTCATTCA 57.022 32.000 0.00 0.00 35.62 2.57
5553 6981 8.887717 AGATGCATTTTAGAGTGTAGTTCATTC 58.112 33.333 0.00 0.00 33.75 2.67
5554 6982 8.798859 AGATGCATTTTAGAGTGTAGTTCATT 57.201 30.769 0.00 0.00 0.00 2.57
5564 6992 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
5565 6993 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
5569 6997 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
5570 6998 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
5571 6999 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
5572 7000 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
5573 7001 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
5574 7002 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
5575 7003 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
5576 7004 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
5577 7005 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
5578 7006 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
5579 7007 8.057011 ACTATGGACCACATACGGATGTATATA 58.943 37.037 14.23 7.10 44.82 0.86
5580 7008 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
5581 7009 6.250711 ACTATGGACCACATACGGATGTATA 58.749 40.000 14.23 6.48 44.82 1.47
5582 7010 5.084519 ACTATGGACCACATACGGATGTAT 58.915 41.667 14.23 4.48 44.82 2.29
5583 7011 4.476297 ACTATGGACCACATACGGATGTA 58.524 43.478 14.23 0.00 44.82 2.29
5585 7013 5.462530 TTACTATGGACCACATACGGATG 57.537 43.478 5.94 5.94 41.03 3.51
5586 7014 6.488769 TTTTACTATGGACCACATACGGAT 57.511 37.500 0.00 0.00 41.03 4.18
5587 7015 5.936187 TTTTACTATGGACCACATACGGA 57.064 39.130 0.00 0.00 41.03 4.69
5588 7016 6.522054 AGATTTTACTATGGACCACATACGG 58.478 40.000 0.00 0.00 41.03 4.02
5589 7017 7.434492 AGAGATTTTACTATGGACCACATACG 58.566 38.462 0.00 0.00 41.03 3.06
5590 7018 9.694137 GTAGAGATTTTACTATGGACCACATAC 57.306 37.037 0.00 0.00 41.03 2.39
5591 7019 9.429109 TGTAGAGATTTTACTATGGACCACATA 57.571 33.333 0.00 0.00 41.03 2.29
5592 7020 8.319057 TGTAGAGATTTTACTATGGACCACAT 57.681 34.615 0.00 0.00 43.68 3.21
5593 7021 7.727578 TGTAGAGATTTTACTATGGACCACA 57.272 36.000 0.00 0.00 0.00 4.17
5594 7022 9.099454 CTTTGTAGAGATTTTACTATGGACCAC 57.901 37.037 0.00 0.00 0.00 4.16
5595 7023 9.042450 TCTTTGTAGAGATTTTACTATGGACCA 57.958 33.333 0.00 0.00 0.00 4.02
5596 7024 9.315525 GTCTTTGTAGAGATTTTACTATGGACC 57.684 37.037 0.00 0.00 0.00 4.46
5615 7043 7.985752 CCTCCGTTCCTTAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5616 7044 7.441458 CCCTCCGTTCCTTAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5617 7045 7.346436 TCCCTCCGTTCCTTAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5618 7046 6.842807 TCCCTCCGTTCCTTAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5619 7047 6.379579 TCCCTCCGTTCCTTAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5620 7048 6.267242 ACTCCCTCCGTTCCTTAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5621 7049 6.141790 ACTCCCTCCGTTCCTTAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5622 7050 6.667558 ACTCCCTCCGTTCCTTAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5623 7051 8.731591 AATACTCCCTCCGTTCCTTAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
5625 7053 8.759782 CATAATACTCCCTCCGTTCCTTAATAT 58.240 37.037 0.00 0.00 0.00 1.28
5626 7054 7.179694 CCATAATACTCCCTCCGTTCCTTAATA 59.820 40.741 0.00 0.00 0.00 0.98
5627 7055 6.013639 CCATAATACTCCCTCCGTTCCTTAAT 60.014 42.308 0.00 0.00 0.00 1.40
5628 7056 5.306160 CCATAATACTCCCTCCGTTCCTTAA 59.694 44.000 0.00 0.00 0.00 1.85
5629 7057 4.836736 CCATAATACTCCCTCCGTTCCTTA 59.163 45.833 0.00 0.00 0.00 2.69
5630 7058 3.646637 CCATAATACTCCCTCCGTTCCTT 59.353 47.826 0.00 0.00 0.00 3.36
5631 7059 3.240302 CCATAATACTCCCTCCGTTCCT 58.760 50.000 0.00 0.00 0.00 3.36
5632 7060 2.970640 ACCATAATACTCCCTCCGTTCC 59.029 50.000 0.00 0.00 0.00 3.62
5633 7061 4.586001 TGTACCATAATACTCCCTCCGTTC 59.414 45.833 0.00 0.00 0.00 3.95
5634 7062 4.549668 TGTACCATAATACTCCCTCCGTT 58.450 43.478 0.00 0.00 0.00 4.44
5635 7063 4.150359 CTGTACCATAATACTCCCTCCGT 58.850 47.826 0.00 0.00 0.00 4.69
5636 7064 3.056749 GCTGTACCATAATACTCCCTCCG 60.057 52.174 0.00 0.00 0.00 4.63
5637 7065 3.901844 TGCTGTACCATAATACTCCCTCC 59.098 47.826 0.00 0.00 0.00 4.30
5638 7066 4.884247 GTGCTGTACCATAATACTCCCTC 58.116 47.826 0.00 0.00 0.00 4.30
5639 7067 4.957684 GTGCTGTACCATAATACTCCCT 57.042 45.455 0.00 0.00 0.00 4.20
5651 7079 8.693401 AGTTGTTACTGTATGGGTGCTGTACC 62.693 46.154 6.35 6.35 40.07 3.34
5652 7080 4.196626 TGTTACTGTATGGGTGCTGTAC 57.803 45.455 0.00 0.00 0.00 2.90
5653 7081 4.285003 AGTTGTTACTGTATGGGTGCTGTA 59.715 41.667 0.00 0.00 31.99 2.74
5654 7082 3.072476 AGTTGTTACTGTATGGGTGCTGT 59.928 43.478 0.00 0.00 31.99 4.40
5655 7083 3.436704 CAGTTGTTACTGTATGGGTGCTG 59.563 47.826 0.00 0.00 45.46 4.41
5656 7084 3.674997 CAGTTGTTACTGTATGGGTGCT 58.325 45.455 0.00 0.00 45.46 4.40
5667 7095 2.224548 GGAGCCCAGTTCAGTTGTTACT 60.225 50.000 0.00 0.00 34.00 2.24
5668 7096 2.152016 GGAGCCCAGTTCAGTTGTTAC 58.848 52.381 0.00 0.00 0.00 2.50
5669 7097 2.038557 GAGGAGCCCAGTTCAGTTGTTA 59.961 50.000 0.00 0.00 0.00 2.41
5670 7098 0.846693 AGGAGCCCAGTTCAGTTGTT 59.153 50.000 0.00 0.00 0.00 2.83
5671 7099 0.398318 GAGGAGCCCAGTTCAGTTGT 59.602 55.000 0.00 0.00 0.00 3.32
5672 7100 0.689623 AGAGGAGCCCAGTTCAGTTG 59.310 55.000 0.00 0.00 0.00 3.16
5673 7101 1.903183 GTAGAGGAGCCCAGTTCAGTT 59.097 52.381 0.00 0.00 0.00 3.16
5674 7102 1.203187 TGTAGAGGAGCCCAGTTCAGT 60.203 52.381 0.00 0.00 0.00 3.41
5675 7103 1.480137 CTGTAGAGGAGCCCAGTTCAG 59.520 57.143 0.00 0.00 0.00 3.02
5676 7104 1.203187 ACTGTAGAGGAGCCCAGTTCA 60.203 52.381 0.00 0.00 34.64 3.18
5677 7105 1.562783 ACTGTAGAGGAGCCCAGTTC 58.437 55.000 0.00 0.00 34.64 3.01
5678 7106 2.921834 TACTGTAGAGGAGCCCAGTT 57.078 50.000 0.00 0.00 38.91 3.16
5679 7107 2.921834 TTACTGTAGAGGAGCCCAGT 57.078 50.000 0.00 0.00 40.92 4.00
5680 7108 3.034635 ACATTACTGTAGAGGAGCCCAG 58.965 50.000 0.00 0.00 32.49 4.45
5681 7109 3.116096 ACATTACTGTAGAGGAGCCCA 57.884 47.619 0.00 0.00 32.49 5.36
5682 7110 5.810080 ATAACATTACTGTAGAGGAGCCC 57.190 43.478 0.00 0.00 33.36 5.19
5683 7111 7.868415 CAGTAATAACATTACTGTAGAGGAGCC 59.132 40.741 22.41 0.00 44.05 4.70
5684 7112 8.804688 CAGTAATAACATTACTGTAGAGGAGC 57.195 38.462 22.41 0.00 44.05 4.70
5811 7240 3.682292 GACCGCCATTCTTCCGGCT 62.682 63.158 0.00 0.00 46.62 5.52
5842 7271 1.153628 CAGCTAAGCTAACCGGCGT 60.154 57.895 6.01 0.00 36.40 5.68
5849 7278 1.996292 CACGCTGACAGCTAAGCTAA 58.004 50.000 24.36 0.00 39.60 3.09
5850 7279 0.458543 GCACGCTGACAGCTAAGCTA 60.459 55.000 24.36 0.00 39.60 3.32
5976 7423 1.822990 TCGTAGGGCTACAAGAACTGG 59.177 52.381 0.00 0.00 35.87 4.00
5977 7424 3.802948 ATCGTAGGGCTACAAGAACTG 57.197 47.619 0.00 0.00 35.87 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.