Multiple sequence alignment - TraesCS2B01G143800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G143800 chr2B 100.000 2174 0 0 1 2174 110141517 110139344 0.000000e+00 4015.0
1 TraesCS2B01G143800 chr2B 89.409 406 42 1 26 431 247031780 247032184 6.400000e-141 510.0
2 TraesCS2B01G143800 chr2B 100.000 202 0 0 2390 2591 110139128 110138927 8.760000e-100 374.0
3 TraesCS2B01G143800 chr2B 88.525 61 4 1 451 511 15586596 15586539 1.290000e-08 71.3
4 TraesCS2B01G143800 chr2A 91.777 1593 91 13 1 1587 71448623 71447065 0.000000e+00 2180.0
5 TraesCS2B01G143800 chr2A 88.496 113 12 1 2056 2168 754198538 754198427 4.500000e-28 135.0
6 TraesCS2B01G143800 chr2A 91.228 57 5 0 1778 1834 772370285 772370341 7.690000e-11 78.7
7 TraesCS2B01G143800 chr2A 100.000 28 0 0 1570 1597 71447070 71447043 5.000000e-03 52.8
8 TraesCS2B01G143800 chr2D 91.886 875 56 5 1 864 72966991 72966121 0.000000e+00 1208.0
9 TraesCS2B01G143800 chr2D 93.285 685 36 2 934 1618 72966113 72965439 0.000000e+00 1002.0
10 TraesCS2B01G143800 chr2D 92.715 604 44 0 1020 1623 72954963 72954360 0.000000e+00 872.0
11 TraesCS2B01G143800 chr7B 89.681 407 41 1 32 438 221308651 221308246 3.820000e-143 518.0
12 TraesCS2B01G143800 chr7B 89.394 66 4 2 451 516 415227096 415227034 2.140000e-11 80.5
13 TraesCS2B01G143800 chr4B 89.409 406 43 0 26 431 514592322 514592727 1.780000e-141 512.0
14 TraesCS2B01G143800 chr1D 89.604 404 41 1 32 435 413773136 413772734 1.780000e-141 512.0
15 TraesCS2B01G143800 chr1D 89.381 113 12 0 2056 2168 288316905 288317017 2.690000e-30 143.0
16 TraesCS2B01G143800 chr1D 88.496 113 13 0 2056 2168 367836935 367836823 1.250000e-28 137.0
17 TraesCS2B01G143800 chr1D 88.710 62 5 2 1777 1837 409016202 409016262 9.940000e-10 75.0
18 TraesCS2B01G143800 chr6D 89.383 405 43 0 32 436 380719183 380718779 6.400000e-141 510.0
19 TraesCS2B01G143800 chr6D 85.333 75 5 4 439 510 3107123 3107052 3.580000e-09 73.1
20 TraesCS2B01G143800 chr6B 89.500 400 42 0 32 431 186691372 186690973 8.270000e-140 507.0
21 TraesCS2B01G143800 chr3A 88.998 409 45 0 26 434 435362648 435363056 8.270000e-140 507.0
22 TraesCS2B01G143800 chr5A 83.125 480 73 6 1120 1591 8918102 8917623 5.120000e-117 431.0
23 TraesCS2B01G143800 chr5A 87.611 113 14 0 2056 2168 607276291 607276179 5.820000e-27 132.0
24 TraesCS2B01G143800 chrUn 83.649 422 50 5 1211 1619 262807197 262807612 1.880000e-101 379.0
25 TraesCS2B01G143800 chrUn 90.000 110 9 2 2059 2168 417992397 417992290 9.670000e-30 141.0
26 TraesCS2B01G143800 chr5B 90.351 114 9 2 2056 2168 621777064 621777176 5.780000e-32 148.0
27 TraesCS2B01G143800 chr1B 90.351 114 10 1 2056 2168 351443599 351443712 5.780000e-32 148.0
28 TraesCS2B01G143800 chr1B 90.179 112 11 0 2056 2167 60015793 60015904 2.080000e-31 147.0
29 TraesCS2B01G143800 chr4A 75.649 308 64 11 1251 1554 41946428 41946128 2.690000e-30 143.0
30 TraesCS2B01G143800 chr4A 88.496 113 13 0 2056 2168 485573719 485573607 1.250000e-28 137.0
31 TraesCS2B01G143800 chr4A 89.655 58 4 1 451 508 583967225 583967280 3.580000e-09 73.1
32 TraesCS2B01G143800 chr4D 73.941 307 72 8 1251 1554 422536003 422536304 1.630000e-22 117.0
33 TraesCS2B01G143800 chr4D 88.889 54 6 0 1777 1830 507786473 507786526 1.660000e-07 67.6
34 TraesCS2B01G143800 chr7D 77.273 154 31 3 1652 1801 580335429 580335582 1.280000e-13 87.9
35 TraesCS2B01G143800 chr6A 89.062 64 6 1 451 514 360478929 360478867 7.690000e-11 78.7
36 TraesCS2B01G143800 chr3B 91.228 57 4 1 464 520 670166343 670166288 2.760000e-10 76.8
37 TraesCS2B01G143800 chr3B 90.000 60 5 1 451 510 705295225 705295167 2.760000e-10 76.8
38 TraesCS2B01G143800 chr3B 100.000 29 0 0 2009 2037 628467777 628467805 1.000000e-03 54.7
39 TraesCS2B01G143800 chr5D 86.154 65 7 2 1653 1716 430525384 430525321 4.630000e-08 69.4
40 TraesCS2B01G143800 chr5D 88.889 54 6 0 1777 1830 84888301 84888354 1.660000e-07 67.6
41 TraesCS2B01G143800 chr7A 93.333 45 3 0 1785 1829 376504437 376504393 1.660000e-07 67.6
42 TraesCS2B01G143800 chr7A 100.000 29 0 0 2009 2037 627163464 627163492 1.000000e-03 54.7
43 TraesCS2B01G143800 chr3D 100.000 29 0 0 2009 2037 539118947 539118975 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G143800 chr2B 110138927 110141517 2590 True 2194.5 4015 100.0000 1 2591 2 chr2B.!!$R2 2590
1 TraesCS2B01G143800 chr2A 71447043 71448623 1580 True 1116.4 2180 95.8885 1 1597 2 chr2A.!!$R2 1596
2 TraesCS2B01G143800 chr2D 72965439 72966991 1552 True 1105.0 1208 92.5855 1 1618 2 chr2D.!!$R2 1617
3 TraesCS2B01G143800 chr2D 72954360 72954963 603 True 872.0 872 92.7150 1020 1623 1 chr2D.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 948 0.528684 GCGAGCATAGTGTCTGACCC 60.529 60.0 5.17 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1825 0.034186 AGCCCGATGCAGAAAATCCA 60.034 50.0 0.0 0.0 44.83 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.646189 CTACTCTCGAAGGCTTTGGC 58.354 55.000 14.42 0.00 37.82 4.52
105 106 2.283173 CCGCTTGGCCCTCCTTTT 60.283 61.111 0.00 0.00 0.00 2.27
139 140 3.719268 TTGGTGGATGAGTACTTGCAT 57.281 42.857 0.00 0.00 0.00 3.96
163 164 1.165270 GGCACGCCAAATAGACAAGT 58.835 50.000 2.36 0.00 35.81 3.16
186 187 1.890979 GCATCCCTCACCATGCTCG 60.891 63.158 0.00 0.00 41.93 5.03
188 189 0.752658 CATCCCTCACCATGCTCGTA 59.247 55.000 0.00 0.00 0.00 3.43
205 206 4.867047 GCTCGTATCATGGACAATATGGAG 59.133 45.833 0.00 0.00 0.00 3.86
236 237 8.773136 CGTAATGCGAGAGTTTTTAAACATAAC 58.227 33.333 7.97 0.00 44.77 1.89
241 242 5.280678 CGAGAGTTTTTAAACATAACAGCGC 59.719 40.000 0.00 0.00 41.30 5.92
309 310 1.977594 GATCGTCGCCGGTGCAAAAT 61.978 55.000 11.05 0.68 37.32 1.82
313 314 2.102161 CGCCGGTGCAAAATAGCC 59.898 61.111 0.00 0.00 37.32 3.93
359 360 1.372838 CCGCATGCCGTGTAATTGGA 61.373 55.000 13.15 0.00 34.38 3.53
366 367 4.209307 TGCCGTGTAATTGGATGACTTA 57.791 40.909 0.00 0.00 0.00 2.24
367 368 3.936453 TGCCGTGTAATTGGATGACTTAC 59.064 43.478 0.00 0.00 0.00 2.34
383 384 9.220767 GGATGACTTACAACAAACTCTATTCTT 57.779 33.333 0.00 0.00 0.00 2.52
407 408 6.808829 TGCTTATTTAATGGATGAGGCAAAG 58.191 36.000 0.00 0.00 0.00 2.77
408 409 6.380846 TGCTTATTTAATGGATGAGGCAAAGT 59.619 34.615 0.00 0.00 0.00 2.66
423 424 2.284150 GCAAAGTTTTTGCCTCCGTTTC 59.716 45.455 13.97 0.00 39.38 2.78
424 425 3.516615 CAAAGTTTTTGCCTCCGTTTCA 58.483 40.909 0.00 0.00 0.00 2.69
454 468 3.670625 AGACTTTTGCTAATGCCGTGTA 58.329 40.909 0.00 0.00 38.71 2.90
567 582 6.884472 TGGATATGAGTTTGGGTAGAAGAA 57.116 37.500 0.00 0.00 0.00 2.52
607 622 6.467775 CCATACCCTATCAATTGACATCCCTT 60.468 42.308 11.07 0.00 0.00 3.95
732 747 4.455533 TGCGCAAAGTAATGATCAGAAGTT 59.544 37.500 8.16 0.00 0.00 2.66
772 790 2.040278 AGGCTTTGAAGAGGCACATGTA 59.960 45.455 0.00 0.00 44.07 2.29
773 791 3.019564 GGCTTTGAAGAGGCACATGTAT 58.980 45.455 0.00 0.00 41.49 2.29
810 828 6.560711 AGCACATTCGTCAAAAGTAAAACTT 58.439 32.000 0.00 0.00 40.80 2.66
848 866 4.019174 AGCAGGTTTATGGTCCAATCAAG 58.981 43.478 0.00 0.00 0.00 3.02
854 872 1.843368 ATGGTCCAATCAAGCACAGG 58.157 50.000 0.00 0.00 0.00 4.00
867 885 1.445410 CACAGGCTTACAGCGCGTA 60.445 57.895 8.43 4.75 43.62 4.42
871 889 1.030457 AGGCTTACAGCGCGTATAGT 58.970 50.000 8.43 3.97 43.62 2.12
873 891 2.620115 AGGCTTACAGCGCGTATAGTTA 59.380 45.455 8.43 0.00 43.62 2.24
895 913 1.879380 CGGAGCAGGTTTGTGATCAAA 59.121 47.619 0.00 0.00 40.64 2.69
909 927 4.748102 TGTGATCAAACCGAACAGTCTTAC 59.252 41.667 0.00 0.00 0.00 2.34
930 948 0.528684 GCGAGCATAGTGTCTGACCC 60.529 60.000 5.17 0.00 0.00 4.46
954 974 6.276091 CACCATCTGTGCGTGCTATATATAT 58.724 40.000 0.00 0.00 38.34 0.86
955 975 7.425606 CACCATCTGTGCGTGCTATATATATA 58.574 38.462 2.49 2.49 38.34 0.86
957 977 9.297037 ACCATCTGTGCGTGCTATATATATATA 57.703 33.333 11.21 11.21 0.00 0.86
958 978 9.780413 CCATCTGTGCGTGCTATATATATATAG 57.220 37.037 26.01 26.01 43.16 1.31
961 981 9.555727 TCTGTGCGTGCTATATATATATAGTGA 57.444 33.333 28.56 18.60 42.58 3.41
962 982 9.818796 CTGTGCGTGCTATATATATATAGTGAG 57.181 37.037 28.56 22.32 42.58 3.51
993 1013 3.489355 AGCACACCTCAACAATTCATCA 58.511 40.909 0.00 0.00 0.00 3.07
1007 1027 1.395635 TCATCACCAATCATGCCTGC 58.604 50.000 0.00 0.00 0.00 4.85
1011 1031 2.411701 CCAATCATGCCTGCTGCG 59.588 61.111 0.00 0.00 45.60 5.18
1062 1082 0.524862 TCGTGTACTTCGCCTCTTCC 59.475 55.000 0.00 0.00 0.00 3.46
1441 1461 3.050703 GACAACATCGTCGAGCCAT 57.949 52.632 0.00 0.00 0.00 4.40
1508 1528 2.642254 CGGGGTACGTGCTCTGGAA 61.642 63.158 4.12 0.00 37.93 3.53
1567 1599 1.002773 ACCTGGACGTGTTTATCCACC 59.997 52.381 0.00 0.00 40.17 4.61
1620 1652 0.460284 CAATCGCCTTAGACGCAGGT 60.460 55.000 0.00 0.00 33.40 4.00
1623 1655 1.971481 TCGCCTTAGACGCAGGTATA 58.029 50.000 0.00 0.00 33.40 1.47
1624 1656 1.605710 TCGCCTTAGACGCAGGTATAC 59.394 52.381 0.00 0.00 33.40 1.47
1625 1657 1.335689 CGCCTTAGACGCAGGTATACC 60.336 57.143 14.54 14.54 33.40 2.73
1635 1667 2.759985 AGGTATACCTGCCCATCGG 58.240 57.895 24.01 0.00 46.55 4.18
1664 1696 4.754667 GGACGGCCCGACCTTGTC 62.755 72.222 17.52 0.00 38.50 3.18
1665 1697 4.754667 GACGGCCCGACCTTGTCC 62.755 72.222 11.71 0.00 35.61 4.02
1688 1720 2.122813 CCGGACCTGGGCCTAGAT 60.123 66.667 19.36 0.00 0.00 1.98
1689 1721 1.766461 CCGGACCTGGGCCTAGATT 60.766 63.158 19.36 3.46 0.00 2.40
1690 1722 1.345715 CCGGACCTGGGCCTAGATTT 61.346 60.000 19.36 0.53 0.00 2.17
1691 1723 0.546598 CGGACCTGGGCCTAGATTTT 59.453 55.000 19.36 0.00 0.00 1.82
1692 1724 1.766496 CGGACCTGGGCCTAGATTTTA 59.234 52.381 19.36 0.00 0.00 1.52
1693 1725 2.171870 CGGACCTGGGCCTAGATTTTAA 59.828 50.000 19.36 0.00 0.00 1.52
1694 1726 3.744530 CGGACCTGGGCCTAGATTTTAAG 60.745 52.174 19.36 0.78 0.00 1.85
1695 1727 3.215151 GACCTGGGCCTAGATTTTAAGC 58.785 50.000 19.36 0.00 0.00 3.09
1696 1728 2.091830 ACCTGGGCCTAGATTTTAAGCC 60.092 50.000 19.36 0.00 43.09 4.35
1699 1731 2.632987 GGCCTAGATTTTAAGCCCGA 57.367 50.000 0.00 0.00 37.66 5.14
1700 1732 2.927028 GGCCTAGATTTTAAGCCCGAA 58.073 47.619 0.00 0.00 37.66 4.30
1701 1733 2.879026 GGCCTAGATTTTAAGCCCGAAG 59.121 50.000 0.00 0.00 37.66 3.79
1728 1760 3.239253 GGCCCGGGTCCGTCATAT 61.239 66.667 24.63 0.00 37.81 1.78
1729 1761 2.814835 GGCCCGGGTCCGTCATATT 61.815 63.158 24.63 0.00 37.81 1.28
1730 1762 1.474332 GGCCCGGGTCCGTCATATTA 61.474 60.000 24.63 0.00 37.81 0.98
1731 1763 0.037605 GCCCGGGTCCGTCATATTAG 60.038 60.000 24.63 0.00 37.81 1.73
1732 1764 0.037605 CCCGGGTCCGTCATATTAGC 60.038 60.000 14.18 0.00 37.81 3.09
1733 1765 0.677288 CCGGGTCCGTCATATTAGCA 59.323 55.000 8.67 0.00 37.81 3.49
1734 1766 1.275291 CCGGGTCCGTCATATTAGCAT 59.725 52.381 8.67 0.00 37.81 3.79
1735 1767 2.289444 CCGGGTCCGTCATATTAGCATT 60.289 50.000 8.67 0.00 37.81 3.56
1736 1768 3.399330 CGGGTCCGTCATATTAGCATTT 58.601 45.455 0.55 0.00 34.35 2.32
1737 1769 3.813166 CGGGTCCGTCATATTAGCATTTT 59.187 43.478 0.55 0.00 34.35 1.82
1738 1770 4.319477 CGGGTCCGTCATATTAGCATTTTG 60.319 45.833 0.55 0.00 34.35 2.44
1739 1771 4.819630 GGGTCCGTCATATTAGCATTTTGA 59.180 41.667 0.00 0.00 0.00 2.69
1740 1772 5.473504 GGGTCCGTCATATTAGCATTTTGAT 59.526 40.000 0.00 0.00 0.00 2.57
1741 1773 6.373779 GGTCCGTCATATTAGCATTTTGATG 58.626 40.000 0.00 0.00 0.00 3.07
1742 1774 6.204688 GGTCCGTCATATTAGCATTTTGATGA 59.795 38.462 0.00 0.00 0.00 2.92
1743 1775 7.255104 GGTCCGTCATATTAGCATTTTGATGAA 60.255 37.037 0.00 0.00 0.00 2.57
1744 1776 7.800380 GTCCGTCATATTAGCATTTTGATGAAG 59.200 37.037 0.00 0.00 0.00 3.02
1745 1777 7.714813 TCCGTCATATTAGCATTTTGATGAAGA 59.285 33.333 0.00 0.00 0.00 2.87
1746 1778 8.013947 CCGTCATATTAGCATTTTGATGAAGAG 58.986 37.037 0.00 0.00 0.00 2.85
1747 1779 8.013947 CGTCATATTAGCATTTTGATGAAGAGG 58.986 37.037 0.00 0.00 0.00 3.69
1748 1780 7.806960 GTCATATTAGCATTTTGATGAAGAGGC 59.193 37.037 0.00 0.00 0.00 4.70
1749 1781 4.989279 TTAGCATTTTGATGAAGAGGCC 57.011 40.909 0.00 0.00 0.00 5.19
1750 1782 2.105766 AGCATTTTGATGAAGAGGCCC 58.894 47.619 0.00 0.00 0.00 5.80
1751 1783 1.202336 GCATTTTGATGAAGAGGCCCG 60.202 52.381 0.00 0.00 0.00 6.13
1752 1784 2.368439 CATTTTGATGAAGAGGCCCGA 58.632 47.619 0.00 0.00 0.00 5.14
1753 1785 2.113860 TTTTGATGAAGAGGCCCGAG 57.886 50.000 0.00 0.00 0.00 4.63
1754 1786 0.253044 TTTGATGAAGAGGCCCGAGG 59.747 55.000 0.00 0.00 0.00 4.63
1773 1805 3.625745 CCTGACGGGCTTTTACACT 57.374 52.632 0.00 0.00 0.00 3.55
1774 1806 1.156736 CCTGACGGGCTTTTACACTG 58.843 55.000 0.00 0.00 0.00 3.66
1775 1807 1.156736 CTGACGGGCTTTTACACTGG 58.843 55.000 0.00 0.00 0.00 4.00
1776 1808 0.887387 TGACGGGCTTTTACACTGGC 60.887 55.000 0.00 0.00 0.00 4.85
1777 1809 1.908066 GACGGGCTTTTACACTGGCG 61.908 60.000 0.00 0.00 0.00 5.69
1778 1810 2.686816 CGGGCTTTTACACTGGCGG 61.687 63.158 0.00 0.00 0.00 6.13
1779 1811 2.340328 GGGCTTTTACACTGGCGGG 61.340 63.158 0.00 0.00 0.00 6.13
1780 1812 2.566529 GCTTTTACACTGGCGGGC 59.433 61.111 0.00 0.00 0.00 6.13
1781 1813 2.989881 GCTTTTACACTGGCGGGCC 61.990 63.158 1.86 1.86 0.00 5.80
1782 1814 1.602323 CTTTTACACTGGCGGGCCA 60.602 57.895 12.54 12.54 45.02 5.36
1807 1839 3.160777 CAGGCTTGGATTTTCTGCATC 57.839 47.619 0.00 0.00 0.00 3.91
1808 1840 1.747355 AGGCTTGGATTTTCTGCATCG 59.253 47.619 0.00 0.00 0.00 3.84
1809 1841 1.202336 GGCTTGGATTTTCTGCATCGG 60.202 52.381 0.00 0.00 0.00 4.18
1810 1842 1.202336 GCTTGGATTTTCTGCATCGGG 60.202 52.381 0.00 0.00 0.00 5.14
1811 1843 0.817013 TTGGATTTTCTGCATCGGGC 59.183 50.000 0.00 0.00 45.13 6.13
1812 1844 0.034186 TGGATTTTCTGCATCGGGCT 60.034 50.000 0.00 0.00 45.15 5.19
1813 1845 1.106285 GGATTTTCTGCATCGGGCTT 58.894 50.000 0.00 0.00 45.15 4.35
1814 1846 1.202336 GGATTTTCTGCATCGGGCTTG 60.202 52.381 0.00 0.00 45.15 4.01
1815 1847 0.819582 ATTTTCTGCATCGGGCTTGG 59.180 50.000 0.00 0.00 45.15 3.61
1816 1848 0.539438 TTTTCTGCATCGGGCTTGGT 60.539 50.000 0.00 0.00 45.15 3.67
1817 1849 0.539438 TTTCTGCATCGGGCTTGGTT 60.539 50.000 0.00 0.00 45.15 3.67
1818 1850 0.326595 TTCTGCATCGGGCTTGGTTA 59.673 50.000 0.00 0.00 45.15 2.85
1819 1851 0.107703 TCTGCATCGGGCTTGGTTAG 60.108 55.000 0.00 0.00 45.15 2.34
1820 1852 1.077787 TGCATCGGGCTTGGTTAGG 60.078 57.895 1.87 0.00 45.15 2.69
1948 1980 7.430992 AAAAAGAAGTTGACGGAATACTACC 57.569 36.000 0.00 0.00 0.00 3.18
1949 1981 5.733620 AAGAAGTTGACGGAATACTACCA 57.266 39.130 0.00 0.00 0.00 3.25
1950 1982 5.934402 AGAAGTTGACGGAATACTACCAT 57.066 39.130 0.00 0.00 0.00 3.55
1951 1983 6.295719 AGAAGTTGACGGAATACTACCATT 57.704 37.500 0.00 0.00 0.00 3.16
1952 1984 6.106673 AGAAGTTGACGGAATACTACCATTG 58.893 40.000 0.00 0.00 0.00 2.82
1953 1985 5.670792 AGTTGACGGAATACTACCATTGA 57.329 39.130 0.00 0.00 0.00 2.57
1954 1986 6.235231 AGTTGACGGAATACTACCATTGAT 57.765 37.500 0.00 0.00 0.00 2.57
1955 1987 7.356089 AGTTGACGGAATACTACCATTGATA 57.644 36.000 0.00 0.00 0.00 2.15
1956 1988 7.963532 AGTTGACGGAATACTACCATTGATAT 58.036 34.615 0.00 0.00 0.00 1.63
1957 1989 8.429641 AGTTGACGGAATACTACCATTGATATT 58.570 33.333 0.00 0.00 0.00 1.28
1958 1990 9.701098 GTTGACGGAATACTACCATTGATATTA 57.299 33.333 0.00 0.00 0.00 0.98
1969 2001 9.975218 ACTACCATTGATATTAAAAGGTTGAGT 57.025 29.630 16.85 11.25 0.00 3.41
1971 2003 8.066612 ACCATTGATATTAAAAGGTTGAGTGG 57.933 34.615 2.92 0.00 0.00 4.00
1972 2004 7.673926 ACCATTGATATTAAAAGGTTGAGTGGT 59.326 33.333 2.92 0.00 0.00 4.16
1973 2005 9.184523 CCATTGATATTAAAAGGTTGAGTGGTA 57.815 33.333 0.00 0.00 0.00 3.25
1976 2008 8.276252 TGATATTAAAAGGTTGAGTGGTAAGC 57.724 34.615 0.00 0.00 0.00 3.09
1977 2009 7.885922 TGATATTAAAAGGTTGAGTGGTAAGCA 59.114 33.333 0.00 0.00 0.00 3.91
1978 2010 6.969993 ATTAAAAGGTTGAGTGGTAAGCAA 57.030 33.333 0.00 0.00 0.00 3.91
1979 2011 6.969993 TTAAAAGGTTGAGTGGTAAGCAAT 57.030 33.333 0.00 0.00 0.00 3.56
1980 2012 5.453567 AAAAGGTTGAGTGGTAAGCAATC 57.546 39.130 0.00 0.00 0.00 2.67
1981 2013 3.073274 AGGTTGAGTGGTAAGCAATCC 57.927 47.619 0.00 0.00 0.00 3.01
1982 2014 2.375174 AGGTTGAGTGGTAAGCAATCCA 59.625 45.455 0.00 0.00 0.00 3.41
1983 2015 3.153919 GGTTGAGTGGTAAGCAATCCAA 58.846 45.455 0.00 0.00 35.38 3.53
1984 2016 3.572255 GGTTGAGTGGTAAGCAATCCAAA 59.428 43.478 0.00 0.00 35.38 3.28
1985 2017 4.546570 GTTGAGTGGTAAGCAATCCAAAC 58.453 43.478 0.00 0.00 35.38 2.93
1986 2018 4.098914 TGAGTGGTAAGCAATCCAAACT 57.901 40.909 0.00 0.00 35.38 2.66
1987 2019 5.235850 TGAGTGGTAAGCAATCCAAACTA 57.764 39.130 0.00 0.00 35.38 2.24
1988 2020 5.001232 TGAGTGGTAAGCAATCCAAACTAC 58.999 41.667 0.00 0.00 35.38 2.73
1989 2021 5.221843 TGAGTGGTAAGCAATCCAAACTACT 60.222 40.000 0.00 0.00 35.00 2.57
1990 2022 6.014070 TGAGTGGTAAGCAATCCAAACTACTA 60.014 38.462 0.00 0.00 32.82 1.82
1991 2023 6.775708 AGTGGTAAGCAATCCAAACTACTAA 58.224 36.000 0.00 0.00 35.38 2.24
1992 2024 7.228590 AGTGGTAAGCAATCCAAACTACTAAA 58.771 34.615 0.00 0.00 35.38 1.85
1993 2025 7.722285 AGTGGTAAGCAATCCAAACTACTAAAA 59.278 33.333 0.00 0.00 35.38 1.52
1994 2026 8.354426 GTGGTAAGCAATCCAAACTACTAAAAA 58.646 33.333 0.00 0.00 35.38 1.94
2059 2091 9.592196 TTATATTATGGTACGAAGGGAGTAACT 57.408 33.333 0.00 0.00 33.23 2.24
2060 2092 5.841957 TTATGGTACGAAGGGAGTAACTC 57.158 43.478 0.00 0.00 33.23 3.01
2061 2093 3.159213 TGGTACGAAGGGAGTAACTCA 57.841 47.619 0.00 0.00 33.23 3.41
2062 2094 3.499338 TGGTACGAAGGGAGTAACTCAA 58.501 45.455 0.00 0.00 33.23 3.02
2063 2095 3.896888 TGGTACGAAGGGAGTAACTCAAA 59.103 43.478 0.00 0.00 33.23 2.69
2064 2096 4.021719 TGGTACGAAGGGAGTAACTCAAAG 60.022 45.833 0.00 0.00 33.23 2.77
2065 2097 4.219288 GGTACGAAGGGAGTAACTCAAAGA 59.781 45.833 0.00 0.00 31.08 2.52
2066 2098 4.950205 ACGAAGGGAGTAACTCAAAGAA 57.050 40.909 0.00 0.00 31.08 2.52
2067 2099 4.629092 ACGAAGGGAGTAACTCAAAGAAC 58.371 43.478 0.00 0.00 31.08 3.01
2068 2100 4.100498 ACGAAGGGAGTAACTCAAAGAACA 59.900 41.667 0.00 0.00 31.08 3.18
2069 2101 5.054477 CGAAGGGAGTAACTCAAAGAACAA 58.946 41.667 0.00 0.00 31.08 2.83
2070 2102 5.526111 CGAAGGGAGTAACTCAAAGAACAAA 59.474 40.000 0.00 0.00 31.08 2.83
2071 2103 6.037830 CGAAGGGAGTAACTCAAAGAACAAAA 59.962 38.462 0.00 0.00 31.08 2.44
2072 2104 7.414762 CGAAGGGAGTAACTCAAAGAACAAAAA 60.415 37.037 0.00 0.00 31.08 1.94
2073 2105 7.898014 AGGGAGTAACTCAAAGAACAAAAAT 57.102 32.000 0.00 0.00 31.08 1.82
2074 2106 7.716612 AGGGAGTAACTCAAAGAACAAAAATG 58.283 34.615 0.00 0.00 31.08 2.32
2075 2107 7.559897 AGGGAGTAACTCAAAGAACAAAAATGA 59.440 33.333 0.00 0.00 31.08 2.57
2076 2108 8.360390 GGGAGTAACTCAAAGAACAAAAATGAT 58.640 33.333 0.00 0.00 31.08 2.45
2113 2145 7.900782 AAATAGTACATAACATACATCGGGC 57.099 36.000 0.00 0.00 0.00 6.13
2114 2146 6.852420 ATAGTACATAACATACATCGGGCT 57.148 37.500 0.00 0.00 0.00 5.19
2115 2147 5.135508 AGTACATAACATACATCGGGCTC 57.864 43.478 0.00 0.00 0.00 4.70
2116 2148 3.402628 ACATAACATACATCGGGCTCC 57.597 47.619 0.00 0.00 0.00 4.70
2117 2149 2.703536 ACATAACATACATCGGGCTCCA 59.296 45.455 0.00 0.00 0.00 3.86
2118 2150 3.244215 ACATAACATACATCGGGCTCCAG 60.244 47.826 0.00 0.00 0.00 3.86
2119 2151 1.496060 AACATACATCGGGCTCCAGA 58.504 50.000 0.00 0.00 0.00 3.86
2120 2152 1.722034 ACATACATCGGGCTCCAGAT 58.278 50.000 0.00 0.00 0.00 2.90
2121 2153 2.050144 ACATACATCGGGCTCCAGATT 58.950 47.619 0.00 0.00 0.00 2.40
2122 2154 2.439507 ACATACATCGGGCTCCAGATTT 59.560 45.455 0.00 0.00 0.00 2.17
2123 2155 2.620251 TACATCGGGCTCCAGATTTG 57.380 50.000 0.00 0.00 0.00 2.32
2124 2156 0.107017 ACATCGGGCTCCAGATTTGG 60.107 55.000 0.00 0.00 46.49 3.28
2125 2157 1.152881 ATCGGGCTCCAGATTTGGC 60.153 57.895 0.00 0.00 44.63 4.52
2126 2158 2.631012 ATCGGGCTCCAGATTTGGCC 62.631 60.000 0.00 0.00 44.63 5.36
2128 2160 2.360191 GGCTCCAGATTTGGCCCA 59.640 61.111 0.00 0.00 44.63 5.36
2129 2161 1.075748 GGCTCCAGATTTGGCCCAT 60.076 57.895 0.00 0.00 44.63 4.00
2130 2162 0.688749 GGCTCCAGATTTGGCCCATT 60.689 55.000 0.00 0.00 44.63 3.16
2131 2163 1.411501 GGCTCCAGATTTGGCCCATTA 60.412 52.381 0.00 0.00 44.63 1.90
2132 2164 2.601905 GCTCCAGATTTGGCCCATTAT 58.398 47.619 0.00 0.00 44.63 1.28
2133 2165 2.560105 GCTCCAGATTTGGCCCATTATC 59.440 50.000 0.00 0.00 44.63 1.75
2134 2166 3.836146 CTCCAGATTTGGCCCATTATCA 58.164 45.455 0.00 0.00 44.63 2.15
2135 2167 3.565307 TCCAGATTTGGCCCATTATCAC 58.435 45.455 0.00 0.00 44.63 3.06
2136 2168 3.053019 TCCAGATTTGGCCCATTATCACA 60.053 43.478 0.00 0.00 44.63 3.58
2137 2169 3.068590 CCAGATTTGGCCCATTATCACAC 59.931 47.826 0.00 0.00 37.73 3.82
2138 2170 3.956199 CAGATTTGGCCCATTATCACACT 59.044 43.478 0.00 0.00 0.00 3.55
2139 2171 3.956199 AGATTTGGCCCATTATCACACTG 59.044 43.478 0.00 0.00 0.00 3.66
2140 2172 3.448093 TTTGGCCCATTATCACACTGA 57.552 42.857 0.00 0.00 0.00 3.41
2141 2173 3.668141 TTGGCCCATTATCACACTGAT 57.332 42.857 0.00 0.00 40.72 2.90
2142 2174 2.934887 TGGCCCATTATCACACTGATG 58.065 47.619 0.00 0.00 37.70 3.07
2143 2175 1.610522 GGCCCATTATCACACTGATGC 59.389 52.381 0.00 0.00 37.70 3.91
2144 2176 2.300433 GCCCATTATCACACTGATGCA 58.700 47.619 0.00 0.00 37.70 3.96
2145 2177 2.689471 GCCCATTATCACACTGATGCAA 59.311 45.455 0.00 0.00 37.70 4.08
2146 2178 3.130869 GCCCATTATCACACTGATGCAAA 59.869 43.478 0.00 0.00 37.70 3.68
2147 2179 4.381825 GCCCATTATCACACTGATGCAAAA 60.382 41.667 0.00 0.00 37.70 2.44
2148 2180 5.682990 GCCCATTATCACACTGATGCAAAAT 60.683 40.000 0.00 0.00 37.70 1.82
2149 2181 6.342906 CCCATTATCACACTGATGCAAAATT 58.657 36.000 0.00 0.00 37.70 1.82
2150 2182 6.819649 CCCATTATCACACTGATGCAAAATTT 59.180 34.615 0.00 0.00 37.70 1.82
2151 2183 7.201574 CCCATTATCACACTGATGCAAAATTTG 60.202 37.037 0.57 0.57 37.70 2.32
2152 2184 7.332430 CCATTATCACACTGATGCAAAATTTGT 59.668 33.333 7.60 0.00 37.70 2.83
2153 2185 7.872163 TTATCACACTGATGCAAAATTTGTC 57.128 32.000 7.60 0.00 37.70 3.18
2154 2186 5.259832 TCACACTGATGCAAAATTTGTCA 57.740 34.783 7.60 6.46 0.00 3.58
2155 2187 5.845103 TCACACTGATGCAAAATTTGTCAT 58.155 33.333 12.83 12.83 32.68 3.06
2156 2188 6.282167 TCACACTGATGCAAAATTTGTCATT 58.718 32.000 7.60 0.00 31.04 2.57
2157 2189 6.762187 TCACACTGATGCAAAATTTGTCATTT 59.238 30.769 7.60 0.00 31.04 2.32
2158 2190 7.280428 TCACACTGATGCAAAATTTGTCATTTT 59.720 29.630 7.60 0.00 31.04 1.82
2159 2191 7.911205 CACACTGATGCAAAATTTGTCATTTTT 59.089 29.630 7.60 0.00 31.04 1.94
2160 2192 7.911205 ACACTGATGCAAAATTTGTCATTTTTG 59.089 29.630 7.60 13.36 42.79 2.44
2161 2193 7.911205 CACTGATGCAAAATTTGTCATTTTTGT 59.089 29.630 16.65 6.54 42.21 2.83
2162 2194 9.107177 ACTGATGCAAAATTTGTCATTTTTGTA 57.893 25.926 16.65 14.29 42.21 2.41
2167 2199 9.322773 TGCAAAATTTGTCATTTTTGTATCTCA 57.677 25.926 16.65 8.05 42.21 3.27
2171 2203 9.491675 AAATTTGTCATTTTTGTATCTCATGCA 57.508 25.926 0.00 0.00 0.00 3.96
2172 2204 9.491675 AATTTGTCATTTTTGTATCTCATGCAA 57.508 25.926 0.00 0.00 32.98 4.08
2173 2205 9.661563 ATTTGTCATTTTTGTATCTCATGCAAT 57.338 25.926 0.00 0.00 34.86 3.56
2425 2457 9.757859 TTCCAAACATTTAAAATATCGTACGAC 57.242 29.630 22.14 0.00 0.00 4.34
2426 2458 8.933807 TCCAAACATTTAAAATATCGTACGACA 58.066 29.630 22.14 10.14 0.00 4.35
2427 2459 9.710979 CCAAACATTTAAAATATCGTACGACAT 57.289 29.630 22.14 12.56 0.00 3.06
2429 2461 9.925268 AAACATTTAAAATATCGTACGACATCC 57.075 29.630 22.14 0.00 0.00 3.51
2430 2462 8.651391 ACATTTAAAATATCGTACGACATCCA 57.349 30.769 22.14 3.98 0.00 3.41
2431 2463 8.761497 ACATTTAAAATATCGTACGACATCCAG 58.239 33.333 22.14 6.46 0.00 3.86
2432 2464 8.761497 CATTTAAAATATCGTACGACATCCAGT 58.239 33.333 22.14 5.22 0.00 4.00
2433 2465 7.688478 TTAAAATATCGTACGACATCCAGTG 57.312 36.000 22.14 0.00 0.00 3.66
2434 2466 4.913335 AATATCGTACGACATCCAGTGT 57.087 40.909 22.14 3.60 45.83 3.55
2435 2467 6.381481 AAATATCGTACGACATCCAGTGTA 57.619 37.500 22.14 5.99 42.36 2.90
2436 2468 3.687572 ATCGTACGACATCCAGTGTAC 57.312 47.619 22.14 0.00 42.36 2.90
2437 2469 1.739466 TCGTACGACATCCAGTGTACC 59.261 52.381 15.28 0.00 42.36 3.34
2438 2470 1.469703 CGTACGACATCCAGTGTACCA 59.530 52.381 10.44 0.00 42.36 3.25
2439 2471 2.098607 CGTACGACATCCAGTGTACCAT 59.901 50.000 10.44 0.00 42.36 3.55
2440 2472 3.428452 CGTACGACATCCAGTGTACCATT 60.428 47.826 10.44 0.00 42.36 3.16
2441 2473 4.201940 CGTACGACATCCAGTGTACCATTA 60.202 45.833 10.44 0.00 42.36 1.90
2442 2474 4.386867 ACGACATCCAGTGTACCATTAG 57.613 45.455 0.00 0.00 42.36 1.73
2443 2475 3.123804 CGACATCCAGTGTACCATTAGC 58.876 50.000 0.00 0.00 42.36 3.09
2444 2476 3.430236 CGACATCCAGTGTACCATTAGCA 60.430 47.826 0.00 0.00 42.36 3.49
2445 2477 4.708177 GACATCCAGTGTACCATTAGCAT 58.292 43.478 0.00 0.00 42.36 3.79
2446 2478 4.708177 ACATCCAGTGTACCATTAGCATC 58.292 43.478 0.00 0.00 39.91 3.91
2447 2479 4.164030 ACATCCAGTGTACCATTAGCATCA 59.836 41.667 0.00 0.00 39.91 3.07
2448 2480 4.835284 TCCAGTGTACCATTAGCATCAA 57.165 40.909 0.00 0.00 0.00 2.57
2449 2481 5.172687 TCCAGTGTACCATTAGCATCAAA 57.827 39.130 0.00 0.00 0.00 2.69
2450 2482 5.565509 TCCAGTGTACCATTAGCATCAAAA 58.434 37.500 0.00 0.00 0.00 2.44
2451 2483 5.647658 TCCAGTGTACCATTAGCATCAAAAG 59.352 40.000 0.00 0.00 0.00 2.27
2452 2484 5.163622 CCAGTGTACCATTAGCATCAAAAGG 60.164 44.000 0.00 0.00 0.00 3.11
2453 2485 4.949856 AGTGTACCATTAGCATCAAAAGGG 59.050 41.667 0.00 0.00 32.86 3.95
2454 2486 4.705023 GTGTACCATTAGCATCAAAAGGGT 59.295 41.667 0.00 0.00 42.11 4.34
2455 2487 4.704540 TGTACCATTAGCATCAAAAGGGTG 59.295 41.667 1.94 0.00 39.86 4.61
2456 2488 3.099141 ACCATTAGCATCAAAAGGGTGG 58.901 45.455 0.00 0.00 38.28 4.61
2457 2489 2.431782 CCATTAGCATCAAAAGGGTGGG 59.568 50.000 0.00 0.00 0.00 4.61
2458 2490 2.990740 TTAGCATCAAAAGGGTGGGT 57.009 45.000 0.00 0.00 0.00 4.51
2459 2491 2.214376 TAGCATCAAAAGGGTGGGTG 57.786 50.000 0.00 0.00 0.00 4.61
2460 2492 1.187567 AGCATCAAAAGGGTGGGTGC 61.188 55.000 0.00 0.00 33.49 5.01
2461 2493 1.470996 GCATCAAAAGGGTGGGTGCA 61.471 55.000 0.00 0.00 33.51 4.57
2462 2494 0.318120 CATCAAAAGGGTGGGTGCAC 59.682 55.000 8.80 8.80 0.00 4.57
2463 2495 0.831711 ATCAAAAGGGTGGGTGCACC 60.832 55.000 28.57 28.57 44.27 5.01
2464 2496 2.520741 AAAAGGGTGGGTGCACCG 60.521 61.111 29.08 0.00 45.89 4.94
2465 2497 4.596585 AAAGGGTGGGTGCACCGG 62.597 66.667 29.08 0.00 45.89 5.28
2468 2500 3.404438 GGGTGGGTGCACCGGATA 61.404 66.667 29.08 12.81 45.89 2.59
2469 2501 2.124860 GGTGGGTGCACCGGATAC 60.125 66.667 29.08 22.43 44.64 2.24
2470 2502 2.666207 GTGGGTGCACCGGATACA 59.334 61.111 29.08 18.06 44.64 2.29
2471 2503 1.223487 GTGGGTGCACCGGATACAT 59.777 57.895 29.08 0.00 44.64 2.29
2472 2504 0.393808 GTGGGTGCACCGGATACATT 60.394 55.000 29.08 0.00 44.64 2.71
2473 2505 0.107410 TGGGTGCACCGGATACATTC 60.107 55.000 29.08 12.57 44.64 2.67
2474 2506 0.818040 GGGTGCACCGGATACATTCC 60.818 60.000 29.08 7.74 41.59 3.01
2475 2507 0.180406 GGTGCACCGGATACATTCCT 59.820 55.000 22.49 0.00 42.99 3.36
2476 2508 1.299541 GTGCACCGGATACATTCCTG 58.700 55.000 9.46 0.00 42.99 3.86
2477 2509 0.908910 TGCACCGGATACATTCCTGT 59.091 50.000 9.46 0.00 42.19 4.00
2480 2512 1.580059 ACCGGATACATTCCTGTGGT 58.420 50.000 9.46 0.00 40.16 4.16
2481 2513 1.209504 ACCGGATACATTCCTGTGGTG 59.790 52.381 9.46 0.00 40.16 4.17
2482 2514 1.475034 CCGGATACATTCCTGTGGTGG 60.475 57.143 0.00 0.00 42.99 4.61
2483 2515 1.209504 CGGATACATTCCTGTGGTGGT 59.790 52.381 0.00 0.00 42.99 4.16
2484 2516 2.643551 GGATACATTCCTGTGGTGGTG 58.356 52.381 0.00 0.00 41.78 4.17
2485 2517 2.643551 GATACATTCCTGTGGTGGTGG 58.356 52.381 0.00 0.00 36.79 4.61
2486 2518 1.440618 TACATTCCTGTGGTGGTGGT 58.559 50.000 0.00 0.00 36.79 4.16
2487 2519 0.178992 ACATTCCTGTGGTGGTGGTG 60.179 55.000 0.00 0.00 33.22 4.17
2488 2520 0.895100 CATTCCTGTGGTGGTGGTGG 60.895 60.000 0.00 0.00 0.00 4.61
2489 2521 2.080336 ATTCCTGTGGTGGTGGTGGG 62.080 60.000 0.00 0.00 0.00 4.61
2490 2522 4.284550 CCTGTGGTGGTGGTGGGG 62.285 72.222 0.00 0.00 0.00 4.96
2491 2523 4.284550 CTGTGGTGGTGGTGGGGG 62.285 72.222 0.00 0.00 0.00 5.40
2516 2548 3.552875 GGGGGTTAGCATTTTCTCTACC 58.447 50.000 0.00 0.00 0.00 3.18
2517 2549 3.202373 GGGGGTTAGCATTTTCTCTACCT 59.798 47.826 0.00 0.00 0.00 3.08
2518 2550 4.325109 GGGGGTTAGCATTTTCTCTACCTT 60.325 45.833 0.00 0.00 0.00 3.50
2519 2551 5.262009 GGGGTTAGCATTTTCTCTACCTTT 58.738 41.667 0.00 0.00 0.00 3.11
2520 2552 5.715279 GGGGTTAGCATTTTCTCTACCTTTT 59.285 40.000 0.00 0.00 0.00 2.27
2521 2553 6.210784 GGGGTTAGCATTTTCTCTACCTTTTT 59.789 38.462 0.00 0.00 0.00 1.94
2522 2554 7.395206 GGGGTTAGCATTTTCTCTACCTTTTTA 59.605 37.037 0.00 0.00 0.00 1.52
2523 2555 8.242053 GGGTTAGCATTTTCTCTACCTTTTTAC 58.758 37.037 0.00 0.00 0.00 2.01
2524 2556 8.242053 GGTTAGCATTTTCTCTACCTTTTTACC 58.758 37.037 0.00 0.00 0.00 2.85
2525 2557 8.789762 GTTAGCATTTTCTCTACCTTTTTACCA 58.210 33.333 0.00 0.00 0.00 3.25
2526 2558 9.528489 TTAGCATTTTCTCTACCTTTTTACCAT 57.472 29.630 0.00 0.00 0.00 3.55
2527 2559 8.422577 AGCATTTTCTCTACCTTTTTACCATT 57.577 30.769 0.00 0.00 0.00 3.16
2528 2560 8.870116 AGCATTTTCTCTACCTTTTTACCATTT 58.130 29.630 0.00 0.00 0.00 2.32
2529 2561 9.489084 GCATTTTCTCTACCTTTTTACCATTTT 57.511 29.630 0.00 0.00 0.00 1.82
2552 2584 6.385649 TTTTTCTAGTAAAACAGTGGCCTG 57.614 37.500 3.32 0.00 44.68 4.85
2553 2585 3.053831 TCTAGTAAAACAGTGGCCTGC 57.946 47.619 3.32 0.00 42.81 4.85
2554 2586 2.370519 TCTAGTAAAACAGTGGCCTGCA 59.629 45.455 3.32 0.00 42.81 4.41
2555 2587 1.318576 AGTAAAACAGTGGCCTGCAC 58.681 50.000 3.32 0.00 42.81 4.57
2556 2588 1.028905 GTAAAACAGTGGCCTGCACA 58.971 50.000 3.32 0.00 42.81 4.57
2557 2589 1.028905 TAAAACAGTGGCCTGCACAC 58.971 50.000 3.32 0.00 42.81 3.82
2558 2590 0.969917 AAAACAGTGGCCTGCACACA 60.970 50.000 3.32 0.00 42.81 3.72
2559 2591 0.756442 AAACAGTGGCCTGCACACAT 60.756 50.000 3.32 0.00 42.81 3.21
2560 2592 1.457823 AACAGTGGCCTGCACACATG 61.458 55.000 3.32 6.36 42.81 3.21
2561 2593 1.900016 CAGTGGCCTGCACACATGT 60.900 57.895 3.32 0.00 41.21 3.21
2562 2594 0.606130 CAGTGGCCTGCACACATGTA 60.606 55.000 3.32 0.00 41.21 2.29
2563 2595 0.606401 AGTGGCCTGCACACATGTAC 60.606 55.000 3.32 0.00 41.21 2.90
2564 2596 0.888736 GTGGCCTGCACACATGTACA 60.889 55.000 3.32 0.00 38.67 2.90
2565 2597 0.038021 TGGCCTGCACACATGTACAT 59.962 50.000 3.32 1.41 0.00 2.29
2566 2598 0.734889 GGCCTGCACACATGTACATC 59.265 55.000 5.07 0.00 0.00 3.06
2567 2599 1.679944 GGCCTGCACACATGTACATCT 60.680 52.381 5.07 0.00 0.00 2.90
2568 2600 1.667724 GCCTGCACACATGTACATCTC 59.332 52.381 5.07 0.00 0.00 2.75
2569 2601 2.679059 GCCTGCACACATGTACATCTCT 60.679 50.000 5.07 0.00 0.00 3.10
2570 2602 3.430790 GCCTGCACACATGTACATCTCTA 60.431 47.826 5.07 0.00 0.00 2.43
2571 2603 4.741837 GCCTGCACACATGTACATCTCTAT 60.742 45.833 5.07 0.00 0.00 1.98
2572 2604 5.363101 CCTGCACACATGTACATCTCTATT 58.637 41.667 5.07 0.00 0.00 1.73
2573 2605 5.819379 CCTGCACACATGTACATCTCTATTT 59.181 40.000 5.07 0.00 0.00 1.40
2574 2606 6.238293 CCTGCACACATGTACATCTCTATTTG 60.238 42.308 5.07 0.00 0.00 2.32
2575 2607 6.172630 TGCACACATGTACATCTCTATTTGT 58.827 36.000 5.07 0.00 0.00 2.83
2576 2608 6.313658 TGCACACATGTACATCTCTATTTGTC 59.686 38.462 5.07 0.00 0.00 3.18
2577 2609 6.313658 GCACACATGTACATCTCTATTTGTCA 59.686 38.462 5.07 0.00 0.00 3.58
2578 2610 7.011763 GCACACATGTACATCTCTATTTGTCAT 59.988 37.037 5.07 0.00 0.00 3.06
2579 2611 8.886719 CACACATGTACATCTCTATTTGTCATT 58.113 33.333 5.07 0.00 0.00 2.57
2580 2612 9.453572 ACACATGTACATCTCTATTTGTCATTT 57.546 29.630 5.07 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.479656 CGAGAGTAGCCCGAGTATGTAC 59.520 54.545 0.00 0.00 0.00 2.90
45 46 7.864108 TGTAGTATTTCTCAATGACCAATGG 57.136 36.000 0.00 0.00 0.00 3.16
105 106 6.654959 TCATCCACCAATCTTTAACCGAATA 58.345 36.000 0.00 0.00 0.00 1.75
139 140 1.807981 CTATTTGGCGTGCCGTCGA 60.808 57.895 6.37 0.00 39.42 4.20
155 156 2.501723 GAGGGATGCCTTGACTTGTCTA 59.498 50.000 7.42 0.00 0.00 2.59
163 164 0.256752 CATGGTGAGGGATGCCTTGA 59.743 55.000 7.42 0.00 31.49 3.02
186 187 4.820897 TCGCTCCATATTGTCCATGATAC 58.179 43.478 0.00 0.00 0.00 2.24
188 189 3.867600 GCTCGCTCCATATTGTCCATGAT 60.868 47.826 0.00 0.00 0.00 2.45
205 206 1.140407 AACTCTCGCATTACGCTCGC 61.140 55.000 0.00 0.00 43.23 5.03
241 242 1.002134 AGCAAGATTGTCGGTGGGG 60.002 57.895 0.00 0.00 0.00 4.96
313 314 2.029470 TCACGCAAAATTAAAGCCCCTG 60.029 45.455 0.00 0.00 0.00 4.45
359 360 8.507249 GCAAGAATAGAGTTTGTTGTAAGTCAT 58.493 33.333 0.00 0.00 33.64 3.06
383 384 6.380846 ACTTTGCCTCATCCATTAAATAAGCA 59.619 34.615 0.00 0.00 0.00 3.91
384 385 6.809869 ACTTTGCCTCATCCATTAAATAAGC 58.190 36.000 0.00 0.00 0.00 3.09
407 408 4.930463 TTTTTGAAACGGAGGCAAAAAC 57.070 36.364 12.95 0.00 42.89 2.43
485 500 3.839642 AAACATGCCCGTGCGTTGC 62.840 57.895 0.00 0.00 41.78 4.17
567 582 2.102588 GGTATGGGCGTGAGTACAATCT 59.897 50.000 0.00 0.00 0.00 2.40
607 622 3.626680 CTCGAACTCGCTTCCGCCA 62.627 63.158 0.00 0.00 39.60 5.69
706 721 3.093574 CTGATCATTACTTTGCGCAACG 58.906 45.455 24.99 24.09 0.00 4.10
707 722 4.340894 TCTGATCATTACTTTGCGCAAC 57.659 40.909 24.99 8.56 0.00 4.17
709 724 4.002982 ACTTCTGATCATTACTTTGCGCA 58.997 39.130 5.66 5.66 0.00 6.09
819 837 1.427368 ACCATAAACCTGCTCCACCAA 59.573 47.619 0.00 0.00 0.00 3.67
856 874 2.602933 CCGCTAACTATACGCGCTGTAA 60.603 50.000 5.73 0.90 45.02 2.41
867 885 2.236395 ACAAACCTGCTCCGCTAACTAT 59.764 45.455 0.00 0.00 0.00 2.12
871 889 0.394938 TCACAAACCTGCTCCGCTAA 59.605 50.000 0.00 0.00 0.00 3.09
873 891 0.674895 GATCACAAACCTGCTCCGCT 60.675 55.000 0.00 0.00 0.00 5.52
885 903 3.804036 AGACTGTTCGGTTTGATCACAA 58.196 40.909 0.00 0.00 0.00 3.33
895 913 0.956633 TCGCTGTAAGACTGTTCGGT 59.043 50.000 0.00 0.00 34.07 4.69
909 927 1.554392 GTCAGACACTATGCTCGCTG 58.446 55.000 0.00 0.00 0.00 5.18
954 974 4.171005 GTGCTACACGTTTGCTCACTATA 58.829 43.478 5.90 0.00 0.00 1.31
955 975 2.993899 GTGCTACACGTTTGCTCACTAT 59.006 45.455 5.90 0.00 0.00 2.12
957 977 1.217882 GTGCTACACGTTTGCTCACT 58.782 50.000 5.90 0.00 0.00 3.41
958 978 0.934496 TGTGCTACACGTTTGCTCAC 59.066 50.000 5.90 2.72 37.14 3.51
959 979 0.934496 GTGTGCTACACGTTTGCTCA 59.066 50.000 4.12 5.58 39.53 4.26
960 980 3.729004 GTGTGCTACACGTTTGCTC 57.271 52.632 4.12 3.38 39.53 4.26
993 1013 2.412323 CGCAGCAGGCATGATTGGT 61.412 57.895 0.62 0.00 45.17 3.67
1011 1031 0.244994 TGCTCCTCTGCTTCGACTTC 59.755 55.000 0.00 0.00 0.00 3.01
1389 1409 0.325296 TGAAGGTGCTCCCGGAGTAT 60.325 55.000 16.09 0.00 38.74 2.12
1474 1494 2.885644 CGTCGCCATCCTGAACCG 60.886 66.667 0.00 0.00 0.00 4.44
1602 1634 1.108776 TACCTGCGTCTAAGGCGATT 58.891 50.000 0.00 0.00 38.48 3.34
1603 1635 1.329256 ATACCTGCGTCTAAGGCGAT 58.671 50.000 0.00 0.00 38.48 4.58
1647 1679 4.754667 GACAAGGTCGGGCCGTCC 62.755 72.222 30.91 30.91 43.70 4.79
1648 1680 4.754667 GGACAAGGTCGGGCCGTC 62.755 72.222 27.32 21.00 43.70 4.79
1671 1703 1.345715 AAATCTAGGCCCAGGTCCGG 61.346 60.000 0.00 0.00 0.00 5.14
1672 1704 0.546598 AAAATCTAGGCCCAGGTCCG 59.453 55.000 0.00 0.00 0.00 4.79
1673 1705 3.821748 CTTAAAATCTAGGCCCAGGTCC 58.178 50.000 0.00 0.00 0.00 4.46
1674 1706 3.215151 GCTTAAAATCTAGGCCCAGGTC 58.785 50.000 0.00 0.00 0.00 3.85
1675 1707 2.091830 GGCTTAAAATCTAGGCCCAGGT 60.092 50.000 0.00 0.00 37.12 4.00
1676 1708 2.587522 GGCTTAAAATCTAGGCCCAGG 58.412 52.381 0.00 0.00 37.12 4.45
1681 1713 2.879026 CCTTCGGGCTTAAAATCTAGGC 59.121 50.000 0.00 0.00 36.31 3.93
1711 1743 1.474332 TAATATGACGGACCCGGGCC 61.474 60.000 24.08 21.91 44.69 5.80
1712 1744 0.037605 CTAATATGACGGACCCGGGC 60.038 60.000 24.08 13.95 44.69 6.13
1713 1745 0.037605 GCTAATATGACGGACCCGGG 60.038 60.000 22.25 22.25 44.69 5.73
1714 1746 0.677288 TGCTAATATGACGGACCCGG 59.323 55.000 13.43 0.00 44.69 5.73
1715 1747 2.743636 ATGCTAATATGACGGACCCG 57.256 50.000 6.94 6.94 46.03 5.28
1716 1748 4.819630 TCAAAATGCTAATATGACGGACCC 59.180 41.667 0.00 0.00 0.00 4.46
1717 1749 6.204688 TCATCAAAATGCTAATATGACGGACC 59.795 38.462 0.00 0.00 32.58 4.46
1718 1750 7.189693 TCATCAAAATGCTAATATGACGGAC 57.810 36.000 0.00 0.00 32.58 4.79
1719 1751 7.714813 TCTTCATCAAAATGCTAATATGACGGA 59.285 33.333 0.00 0.00 32.58 4.69
1720 1752 7.864686 TCTTCATCAAAATGCTAATATGACGG 58.135 34.615 0.00 0.00 32.58 4.79
1721 1753 8.013947 CCTCTTCATCAAAATGCTAATATGACG 58.986 37.037 0.00 0.00 32.58 4.35
1722 1754 7.806960 GCCTCTTCATCAAAATGCTAATATGAC 59.193 37.037 0.00 0.00 32.58 3.06
1723 1755 7.040201 GGCCTCTTCATCAAAATGCTAATATGA 60.040 37.037 0.00 0.00 32.58 2.15
1724 1756 7.088905 GGCCTCTTCATCAAAATGCTAATATG 58.911 38.462 0.00 0.00 32.58 1.78
1725 1757 6.210185 GGGCCTCTTCATCAAAATGCTAATAT 59.790 38.462 0.84 0.00 32.58 1.28
1726 1758 5.536161 GGGCCTCTTCATCAAAATGCTAATA 59.464 40.000 0.84 0.00 32.58 0.98
1727 1759 4.343239 GGGCCTCTTCATCAAAATGCTAAT 59.657 41.667 0.84 0.00 32.58 1.73
1728 1760 3.701040 GGGCCTCTTCATCAAAATGCTAA 59.299 43.478 0.84 0.00 32.58 3.09
1729 1761 3.290710 GGGCCTCTTCATCAAAATGCTA 58.709 45.455 0.84 0.00 32.58 3.49
1730 1762 2.105766 GGGCCTCTTCATCAAAATGCT 58.894 47.619 0.84 0.00 32.58 3.79
1731 1763 1.202336 CGGGCCTCTTCATCAAAATGC 60.202 52.381 0.84 0.00 32.58 3.56
1732 1764 2.357009 CTCGGGCCTCTTCATCAAAATG 59.643 50.000 0.84 0.00 0.00 2.32
1733 1765 2.648059 CTCGGGCCTCTTCATCAAAAT 58.352 47.619 0.84 0.00 0.00 1.82
1734 1766 1.340017 CCTCGGGCCTCTTCATCAAAA 60.340 52.381 0.84 0.00 0.00 2.44
1735 1767 0.253044 CCTCGGGCCTCTTCATCAAA 59.747 55.000 0.84 0.00 0.00 2.69
1736 1768 1.907739 CCTCGGGCCTCTTCATCAA 59.092 57.895 0.84 0.00 0.00 2.57
1737 1769 2.735772 GCCTCGGGCCTCTTCATCA 61.736 63.158 0.84 0.00 44.06 3.07
1738 1770 2.110006 GCCTCGGGCCTCTTCATC 59.890 66.667 0.84 0.00 44.06 2.92
1755 1787 1.156736 CAGTGTAAAAGCCCGTCAGG 58.843 55.000 0.00 0.00 39.47 3.86
1756 1788 1.156736 CCAGTGTAAAAGCCCGTCAG 58.843 55.000 0.00 0.00 0.00 3.51
1757 1789 0.887387 GCCAGTGTAAAAGCCCGTCA 60.887 55.000 0.00 0.00 0.00 4.35
1758 1790 1.873863 GCCAGTGTAAAAGCCCGTC 59.126 57.895 0.00 0.00 0.00 4.79
1759 1791 1.964373 CGCCAGTGTAAAAGCCCGT 60.964 57.895 0.00 0.00 0.00 5.28
1760 1792 2.686816 CCGCCAGTGTAAAAGCCCG 61.687 63.158 0.00 0.00 0.00 6.13
1761 1793 2.340328 CCCGCCAGTGTAAAAGCCC 61.340 63.158 0.00 0.00 0.00 5.19
1762 1794 2.989881 GCCCGCCAGTGTAAAAGCC 61.990 63.158 0.00 0.00 0.00 4.35
1763 1795 2.566529 GCCCGCCAGTGTAAAAGC 59.433 61.111 0.00 0.00 0.00 3.51
1764 1796 1.602323 TGGCCCGCCAGTGTAAAAG 60.602 57.895 3.74 0.00 41.89 2.27
1765 1797 2.516405 TGGCCCGCCAGTGTAAAA 59.484 55.556 3.74 0.00 41.89 1.52
1781 1813 0.906282 AAAATCCAAGCCTGGGCCTG 60.906 55.000 4.53 3.68 43.71 4.85
1782 1814 0.615827 GAAAATCCAAGCCTGGGCCT 60.616 55.000 4.53 0.00 43.71 5.19
1783 1815 0.615827 AGAAAATCCAAGCCTGGGCC 60.616 55.000 8.11 0.00 43.71 5.80
1784 1816 0.533951 CAGAAAATCCAAGCCTGGGC 59.466 55.000 0.35 3.00 43.71 5.36
1785 1817 0.533951 GCAGAAAATCCAAGCCTGGG 59.466 55.000 0.35 0.00 43.71 4.45
1786 1818 1.259609 TGCAGAAAATCCAAGCCTGG 58.740 50.000 0.00 0.00 45.08 4.45
1787 1819 2.479049 CGATGCAGAAAATCCAAGCCTG 60.479 50.000 0.00 0.00 0.00 4.85
1788 1820 1.747355 CGATGCAGAAAATCCAAGCCT 59.253 47.619 0.00 0.00 0.00 4.58
1789 1821 1.202336 CCGATGCAGAAAATCCAAGCC 60.202 52.381 0.00 0.00 0.00 4.35
1790 1822 1.202336 CCCGATGCAGAAAATCCAAGC 60.202 52.381 0.00 0.00 0.00 4.01
1791 1823 1.202336 GCCCGATGCAGAAAATCCAAG 60.202 52.381 0.00 0.00 40.77 3.61
1792 1824 0.817013 GCCCGATGCAGAAAATCCAA 59.183 50.000 0.00 0.00 40.77 3.53
1793 1825 0.034186 AGCCCGATGCAGAAAATCCA 60.034 50.000 0.00 0.00 44.83 3.41
1794 1826 1.106285 AAGCCCGATGCAGAAAATCC 58.894 50.000 0.00 0.00 44.83 3.01
1795 1827 1.202336 CCAAGCCCGATGCAGAAAATC 60.202 52.381 0.00 0.00 44.83 2.17
1796 1828 0.819582 CCAAGCCCGATGCAGAAAAT 59.180 50.000 0.00 0.00 44.83 1.82
1797 1829 0.539438 ACCAAGCCCGATGCAGAAAA 60.539 50.000 0.00 0.00 44.83 2.29
1798 1830 0.539438 AACCAAGCCCGATGCAGAAA 60.539 50.000 0.00 0.00 44.83 2.52
1799 1831 0.326595 TAACCAAGCCCGATGCAGAA 59.673 50.000 0.00 0.00 44.83 3.02
1800 1832 0.107703 CTAACCAAGCCCGATGCAGA 60.108 55.000 0.00 0.00 44.83 4.26
1801 1833 1.097547 CCTAACCAAGCCCGATGCAG 61.098 60.000 0.00 0.00 44.83 4.41
1802 1834 1.077787 CCTAACCAAGCCCGATGCA 60.078 57.895 0.00 0.00 44.83 3.96
1803 1835 2.481471 GCCTAACCAAGCCCGATGC 61.481 63.158 0.00 0.00 41.71 3.91
1804 1836 1.823899 GGCCTAACCAAGCCCGATG 60.824 63.158 0.00 0.00 43.76 3.84
1805 1837 2.595655 GGCCTAACCAAGCCCGAT 59.404 61.111 0.00 0.00 43.76 4.18
1876 1908 8.934023 ATCTGGTCAACCTTTATAAAGTTTGA 57.066 30.769 25.69 25.69 42.62 2.69
1922 1954 9.159364 GGTAGTATTCCGTCAACTTCTTTTTAT 57.841 33.333 0.00 0.00 0.00 1.40
1923 1955 8.149647 TGGTAGTATTCCGTCAACTTCTTTTTA 58.850 33.333 0.00 0.00 0.00 1.52
1924 1956 6.993902 TGGTAGTATTCCGTCAACTTCTTTTT 59.006 34.615 0.00 0.00 0.00 1.94
1925 1957 6.527423 TGGTAGTATTCCGTCAACTTCTTTT 58.473 36.000 0.00 0.00 0.00 2.27
1926 1958 6.105397 TGGTAGTATTCCGTCAACTTCTTT 57.895 37.500 0.00 0.00 0.00 2.52
1927 1959 5.733620 TGGTAGTATTCCGTCAACTTCTT 57.266 39.130 0.00 0.00 0.00 2.52
1928 1960 5.934402 ATGGTAGTATTCCGTCAACTTCT 57.066 39.130 0.00 0.00 0.00 2.85
1929 1961 6.103997 TCAATGGTAGTATTCCGTCAACTTC 58.896 40.000 0.00 0.00 0.00 3.01
1930 1962 6.045072 TCAATGGTAGTATTCCGTCAACTT 57.955 37.500 0.00 0.00 0.00 2.66
1931 1963 5.670792 TCAATGGTAGTATTCCGTCAACT 57.329 39.130 0.00 0.00 0.00 3.16
1932 1964 8.603242 AATATCAATGGTAGTATTCCGTCAAC 57.397 34.615 0.00 0.00 0.00 3.18
1943 1975 9.975218 ACTCAACCTTTTAATATCAATGGTAGT 57.025 29.630 5.89 4.89 32.68 2.73
1945 1977 9.184523 CCACTCAACCTTTTAATATCAATGGTA 57.815 33.333 5.89 0.00 32.68 3.25
1946 1978 7.673926 ACCACTCAACCTTTTAATATCAATGGT 59.326 33.333 0.00 0.00 34.04 3.55
1947 1979 8.066612 ACCACTCAACCTTTTAATATCAATGG 57.933 34.615 0.00 0.00 0.00 3.16
1950 1982 8.736244 GCTTACCACTCAACCTTTTAATATCAA 58.264 33.333 0.00 0.00 0.00 2.57
1951 1983 7.885922 TGCTTACCACTCAACCTTTTAATATCA 59.114 33.333 0.00 0.00 0.00 2.15
1952 1984 8.276252 TGCTTACCACTCAACCTTTTAATATC 57.724 34.615 0.00 0.00 0.00 1.63
1953 1985 8.644374 TTGCTTACCACTCAACCTTTTAATAT 57.356 30.769 0.00 0.00 0.00 1.28
1954 1986 8.644374 ATTGCTTACCACTCAACCTTTTAATA 57.356 30.769 0.00 0.00 0.00 0.98
1955 1987 6.969993 TTGCTTACCACTCAACCTTTTAAT 57.030 33.333 0.00 0.00 0.00 1.40
1956 1988 6.015772 GGATTGCTTACCACTCAACCTTTTAA 60.016 38.462 0.00 0.00 0.00 1.52
1957 1989 5.475564 GGATTGCTTACCACTCAACCTTTTA 59.524 40.000 0.00 0.00 0.00 1.52
1958 1990 4.280929 GGATTGCTTACCACTCAACCTTTT 59.719 41.667 0.00 0.00 0.00 2.27
1959 1991 3.826729 GGATTGCTTACCACTCAACCTTT 59.173 43.478 0.00 0.00 0.00 3.11
1960 1992 3.181434 TGGATTGCTTACCACTCAACCTT 60.181 43.478 0.00 0.00 0.00 3.50
1961 1993 2.375174 TGGATTGCTTACCACTCAACCT 59.625 45.455 0.00 0.00 0.00 3.50
1962 1994 2.790433 TGGATTGCTTACCACTCAACC 58.210 47.619 0.00 0.00 0.00 3.77
1963 1995 4.278419 AGTTTGGATTGCTTACCACTCAAC 59.722 41.667 0.00 0.00 35.81 3.18
1964 1996 4.469657 AGTTTGGATTGCTTACCACTCAA 58.530 39.130 0.00 0.00 35.81 3.02
1965 1997 4.098914 AGTTTGGATTGCTTACCACTCA 57.901 40.909 0.00 0.00 35.81 3.41
1966 1998 5.246307 AGTAGTTTGGATTGCTTACCACTC 58.754 41.667 0.00 0.00 35.81 3.51
1967 1999 5.242795 AGTAGTTTGGATTGCTTACCACT 57.757 39.130 0.00 0.00 35.81 4.00
1968 2000 7.443259 TTTAGTAGTTTGGATTGCTTACCAC 57.557 36.000 0.00 0.00 35.81 4.16
1969 2001 8.466617 TTTTTAGTAGTTTGGATTGCTTACCA 57.533 30.769 0.00 0.00 0.00 3.25
2033 2065 9.592196 AGTTACTCCCTTCGTACCATAATATAA 57.408 33.333 0.00 0.00 0.00 0.98
2034 2066 9.236006 GAGTTACTCCCTTCGTACCATAATATA 57.764 37.037 0.00 0.00 0.00 0.86
2035 2067 7.727186 TGAGTTACTCCCTTCGTACCATAATAT 59.273 37.037 10.10 0.00 0.00 1.28
2036 2068 7.062322 TGAGTTACTCCCTTCGTACCATAATA 58.938 38.462 10.10 0.00 0.00 0.98
2037 2069 5.895534 TGAGTTACTCCCTTCGTACCATAAT 59.104 40.000 10.10 0.00 0.00 1.28
2038 2070 5.263599 TGAGTTACTCCCTTCGTACCATAA 58.736 41.667 10.10 0.00 0.00 1.90
2039 2071 4.858850 TGAGTTACTCCCTTCGTACCATA 58.141 43.478 10.10 0.00 0.00 2.74
2040 2072 3.705051 TGAGTTACTCCCTTCGTACCAT 58.295 45.455 10.10 0.00 0.00 3.55
2041 2073 3.159213 TGAGTTACTCCCTTCGTACCA 57.841 47.619 10.10 0.00 0.00 3.25
2042 2074 4.219288 TCTTTGAGTTACTCCCTTCGTACC 59.781 45.833 10.10 0.00 0.00 3.34
2043 2075 5.382618 TCTTTGAGTTACTCCCTTCGTAC 57.617 43.478 10.10 0.00 0.00 3.67
2044 2076 5.302568 TGTTCTTTGAGTTACTCCCTTCGTA 59.697 40.000 10.10 0.00 0.00 3.43
2045 2077 4.100498 TGTTCTTTGAGTTACTCCCTTCGT 59.900 41.667 10.10 0.00 0.00 3.85
2046 2078 4.628074 TGTTCTTTGAGTTACTCCCTTCG 58.372 43.478 10.10 0.00 0.00 3.79
2047 2079 6.937436 TTTGTTCTTTGAGTTACTCCCTTC 57.063 37.500 10.10 0.00 0.00 3.46
2048 2080 7.712204 TTTTTGTTCTTTGAGTTACTCCCTT 57.288 32.000 10.10 0.00 0.00 3.95
2049 2081 7.559897 TCATTTTTGTTCTTTGAGTTACTCCCT 59.440 33.333 10.10 0.00 0.00 4.20
2050 2082 7.712797 TCATTTTTGTTCTTTGAGTTACTCCC 58.287 34.615 10.10 0.00 0.00 4.30
2087 2119 9.084164 GCCCGATGTATGTTATGTACTATTTAG 57.916 37.037 0.00 0.00 0.00 1.85
2088 2120 8.809066 AGCCCGATGTATGTTATGTACTATTTA 58.191 33.333 0.00 0.00 0.00 1.40
2089 2121 7.676947 AGCCCGATGTATGTTATGTACTATTT 58.323 34.615 0.00 0.00 0.00 1.40
2090 2122 7.241042 AGCCCGATGTATGTTATGTACTATT 57.759 36.000 0.00 0.00 0.00 1.73
2091 2123 6.127423 GGAGCCCGATGTATGTTATGTACTAT 60.127 42.308 0.00 0.00 0.00 2.12
2092 2124 5.184479 GGAGCCCGATGTATGTTATGTACTA 59.816 44.000 0.00 0.00 0.00 1.82
2093 2125 4.021368 GGAGCCCGATGTATGTTATGTACT 60.021 45.833 0.00 0.00 0.00 2.73
2094 2126 4.243270 GGAGCCCGATGTATGTTATGTAC 58.757 47.826 0.00 0.00 0.00 2.90
2095 2127 3.898741 TGGAGCCCGATGTATGTTATGTA 59.101 43.478 0.00 0.00 0.00 2.29
2096 2128 2.703536 TGGAGCCCGATGTATGTTATGT 59.296 45.455 0.00 0.00 0.00 2.29
2097 2129 3.006859 TCTGGAGCCCGATGTATGTTATG 59.993 47.826 0.00 0.00 0.00 1.90
2098 2130 3.239449 TCTGGAGCCCGATGTATGTTAT 58.761 45.455 0.00 0.00 0.00 1.89
2099 2131 2.673258 TCTGGAGCCCGATGTATGTTA 58.327 47.619 0.00 0.00 0.00 2.41
2100 2132 1.496060 TCTGGAGCCCGATGTATGTT 58.504 50.000 0.00 0.00 0.00 2.71
2101 2133 1.722034 ATCTGGAGCCCGATGTATGT 58.278 50.000 0.00 0.00 0.00 2.29
2102 2134 2.810274 CAAATCTGGAGCCCGATGTATG 59.190 50.000 0.00 0.00 0.00 2.39
2103 2135 2.224621 CCAAATCTGGAGCCCGATGTAT 60.225 50.000 0.00 0.00 46.92 2.29
2104 2136 1.140852 CCAAATCTGGAGCCCGATGTA 59.859 52.381 0.00 0.00 46.92 2.29
2105 2137 0.107017 CCAAATCTGGAGCCCGATGT 60.107 55.000 0.00 0.00 46.92 3.06
2106 2138 1.450531 GCCAAATCTGGAGCCCGATG 61.451 60.000 0.00 0.00 46.92 3.84
2107 2139 1.152881 GCCAAATCTGGAGCCCGAT 60.153 57.895 0.00 0.00 46.92 4.18
2108 2140 2.272146 GCCAAATCTGGAGCCCGA 59.728 61.111 0.00 0.00 46.92 5.14
2109 2141 2.830370 GGCCAAATCTGGAGCCCG 60.830 66.667 0.00 0.00 46.92 6.13
2111 2143 0.688749 AATGGGCCAAATCTGGAGCC 60.689 55.000 11.89 0.00 46.92 4.70
2112 2144 2.071778 TAATGGGCCAAATCTGGAGC 57.928 50.000 11.89 0.00 46.92 4.70
2113 2145 3.571401 GTGATAATGGGCCAAATCTGGAG 59.429 47.826 24.45 0.00 46.92 3.86
2114 2146 3.053019 TGTGATAATGGGCCAAATCTGGA 60.053 43.478 24.45 9.21 46.92 3.86
2115 2147 3.068590 GTGTGATAATGGGCCAAATCTGG 59.931 47.826 24.45 0.00 46.65 3.86
2116 2148 3.956199 AGTGTGATAATGGGCCAAATCTG 59.044 43.478 24.45 0.00 0.00 2.90
2117 2149 3.956199 CAGTGTGATAATGGGCCAAATCT 59.044 43.478 24.45 9.19 0.00 2.40
2118 2150 3.953612 TCAGTGTGATAATGGGCCAAATC 59.046 43.478 11.89 17.28 0.00 2.17
2119 2151 3.979911 TCAGTGTGATAATGGGCCAAAT 58.020 40.909 11.89 7.49 0.00 2.32
2120 2152 3.448093 TCAGTGTGATAATGGGCCAAA 57.552 42.857 11.89 1.34 0.00 3.28
2121 2153 3.289836 CATCAGTGTGATAATGGGCCAA 58.710 45.455 11.89 0.00 34.28 4.52
2122 2154 2.934887 CATCAGTGTGATAATGGGCCA 58.065 47.619 9.61 9.61 34.28 5.36
2123 2155 1.610522 GCATCAGTGTGATAATGGGCC 59.389 52.381 0.00 0.00 34.28 5.80
2124 2156 2.300433 TGCATCAGTGTGATAATGGGC 58.700 47.619 0.00 0.00 34.28 5.36
2125 2157 4.987408 TTTGCATCAGTGTGATAATGGG 57.013 40.909 0.00 0.00 34.28 4.00
2126 2158 7.332430 ACAAATTTTGCATCAGTGTGATAATGG 59.668 33.333 9.04 0.00 34.28 3.16
2127 2159 8.246908 ACAAATTTTGCATCAGTGTGATAATG 57.753 30.769 9.04 0.00 34.28 1.90
2128 2160 8.089597 TGACAAATTTTGCATCAGTGTGATAAT 58.910 29.630 9.04 0.00 34.28 1.28
2129 2161 7.432059 TGACAAATTTTGCATCAGTGTGATAA 58.568 30.769 9.04 0.00 34.28 1.75
2130 2162 6.979465 TGACAAATTTTGCATCAGTGTGATA 58.021 32.000 9.04 0.00 34.28 2.15
2131 2163 5.845103 TGACAAATTTTGCATCAGTGTGAT 58.155 33.333 9.04 0.00 37.65 3.06
2132 2164 5.259832 TGACAAATTTTGCATCAGTGTGA 57.740 34.783 9.04 0.00 0.00 3.58
2133 2165 6.533819 AATGACAAATTTTGCATCAGTGTG 57.466 33.333 9.04 0.00 30.71 3.82
2134 2166 7.556733 AAAATGACAAATTTTGCATCAGTGT 57.443 28.000 9.04 0.00 30.84 3.55
2135 2167 7.911205 ACAAAAATGACAAATTTTGCATCAGTG 59.089 29.630 20.88 12.24 45.76 3.66
2136 2168 7.987649 ACAAAAATGACAAATTTTGCATCAGT 58.012 26.923 20.88 3.39 45.76 3.41
2141 2173 9.322773 TGAGATACAAAAATGACAAATTTTGCA 57.677 25.926 20.88 13.68 45.76 4.08
2145 2177 9.491675 TGCATGAGATACAAAAATGACAAATTT 57.508 25.926 0.00 0.00 0.00 1.82
2146 2178 9.491675 TTGCATGAGATACAAAAATGACAAATT 57.508 25.926 0.00 0.00 0.00 1.82
2147 2179 9.661563 ATTGCATGAGATACAAAAATGACAAAT 57.338 25.926 0.00 0.00 0.00 2.32
2399 2431 9.757859 GTCGTACGATATTTTAAATGTTTGGAA 57.242 29.630 22.57 0.00 0.00 3.53
2400 2432 8.933807 TGTCGTACGATATTTTAAATGTTTGGA 58.066 29.630 22.57 0.00 0.00 3.53
2401 2433 9.710979 ATGTCGTACGATATTTTAAATGTTTGG 57.289 29.630 22.57 0.00 0.00 3.28
2403 2435 9.925268 GGATGTCGTACGATATTTTAAATGTTT 57.075 29.630 25.41 2.78 0.00 2.83
2404 2436 9.100554 TGGATGTCGTACGATATTTTAAATGTT 57.899 29.630 25.41 3.28 0.00 2.71
2405 2437 8.651391 TGGATGTCGTACGATATTTTAAATGT 57.349 30.769 25.41 3.99 0.00 2.71
2406 2438 8.761497 ACTGGATGTCGTACGATATTTTAAATG 58.239 33.333 25.41 14.65 0.00 2.32
2407 2439 8.761497 CACTGGATGTCGTACGATATTTTAAAT 58.239 33.333 25.41 5.42 0.00 1.40
2408 2440 7.760794 ACACTGGATGTCGTACGATATTTTAAA 59.239 33.333 25.41 10.92 36.54 1.52
2409 2441 7.259882 ACACTGGATGTCGTACGATATTTTAA 58.740 34.615 25.41 12.37 36.54 1.52
2410 2442 6.798482 ACACTGGATGTCGTACGATATTTTA 58.202 36.000 25.41 14.89 36.54 1.52
2411 2443 5.657474 ACACTGGATGTCGTACGATATTTT 58.343 37.500 25.41 7.59 36.54 1.82
2412 2444 5.258456 ACACTGGATGTCGTACGATATTT 57.742 39.130 25.41 8.31 36.54 1.40
2413 2445 4.913335 ACACTGGATGTCGTACGATATT 57.087 40.909 25.41 12.27 36.54 1.28
2414 2446 4.214971 GGTACACTGGATGTCGTACGATAT 59.785 45.833 25.01 25.01 42.09 1.63
2415 2447 3.561310 GGTACACTGGATGTCGTACGATA 59.439 47.826 22.57 19.81 42.09 2.92
2416 2448 2.357009 GGTACACTGGATGTCGTACGAT 59.643 50.000 22.57 6.10 42.09 3.73
2417 2449 1.739466 GGTACACTGGATGTCGTACGA 59.261 52.381 15.28 15.28 42.09 3.43
2418 2450 1.469703 TGGTACACTGGATGTCGTACG 59.530 52.381 9.53 9.53 42.09 3.67
2433 2465 4.097892 CCACCCTTTTGATGCTAATGGTAC 59.902 45.833 0.00 0.00 0.00 3.34
2434 2466 4.277476 CCACCCTTTTGATGCTAATGGTA 58.723 43.478 0.00 0.00 0.00 3.25
2435 2467 3.099141 CCACCCTTTTGATGCTAATGGT 58.901 45.455 0.00 0.00 0.00 3.55
2436 2468 2.431782 CCCACCCTTTTGATGCTAATGG 59.568 50.000 0.00 0.00 0.00 3.16
2437 2469 3.099141 ACCCACCCTTTTGATGCTAATG 58.901 45.455 0.00 0.00 0.00 1.90
2438 2470 3.099141 CACCCACCCTTTTGATGCTAAT 58.901 45.455 0.00 0.00 0.00 1.73
2439 2471 2.524306 CACCCACCCTTTTGATGCTAA 58.476 47.619 0.00 0.00 0.00 3.09
2440 2472 1.890573 GCACCCACCCTTTTGATGCTA 60.891 52.381 0.00 0.00 0.00 3.49
2441 2473 1.187567 GCACCCACCCTTTTGATGCT 61.188 55.000 0.00 0.00 0.00 3.79
2442 2474 1.293179 GCACCCACCCTTTTGATGC 59.707 57.895 0.00 0.00 0.00 3.91
2443 2475 0.318120 GTGCACCCACCCTTTTGATG 59.682 55.000 5.22 0.00 35.92 3.07
2444 2476 2.745379 GTGCACCCACCCTTTTGAT 58.255 52.632 5.22 0.00 35.92 2.57
2445 2477 4.268720 GTGCACCCACCCTTTTGA 57.731 55.556 5.22 0.00 35.92 2.69
2453 2485 0.393808 AATGTATCCGGTGCACCCAC 60.394 55.000 29.95 21.00 41.32 4.61
2454 2486 0.107410 GAATGTATCCGGTGCACCCA 60.107 55.000 29.95 21.07 0.00 4.51
2455 2487 0.818040 GGAATGTATCCGGTGCACCC 60.818 60.000 29.95 15.85 38.79 4.61
2456 2488 2.702847 GGAATGTATCCGGTGCACC 58.297 57.895 26.78 26.78 38.79 5.01
2465 2497 2.026262 ACCACCACCACAGGAATGTATC 60.026 50.000 0.00 0.00 0.00 2.24
2466 2498 1.992557 ACCACCACCACAGGAATGTAT 59.007 47.619 0.00 0.00 0.00 2.29
2467 2499 1.073125 CACCACCACCACAGGAATGTA 59.927 52.381 0.00 0.00 0.00 2.29
2468 2500 0.178992 CACCACCACCACAGGAATGT 60.179 55.000 0.00 0.00 0.00 2.71
2469 2501 0.895100 CCACCACCACCACAGGAATG 60.895 60.000 0.00 0.00 0.00 2.67
2470 2502 1.460255 CCACCACCACCACAGGAAT 59.540 57.895 0.00 0.00 0.00 3.01
2471 2503 2.762554 CCCACCACCACCACAGGAA 61.763 63.158 0.00 0.00 0.00 3.36
2472 2504 3.174987 CCCACCACCACCACAGGA 61.175 66.667 0.00 0.00 0.00 3.86
2473 2505 4.284550 CCCCACCACCACCACAGG 62.285 72.222 0.00 0.00 0.00 4.00
2474 2506 4.284550 CCCCCACCACCACCACAG 62.285 72.222 0.00 0.00 0.00 3.66
2495 2527 3.202373 AGGTAGAGAAAATGCTAACCCCC 59.798 47.826 0.00 0.00 0.00 5.40
2496 2528 4.505324 AGGTAGAGAAAATGCTAACCCC 57.495 45.455 0.00 0.00 0.00 4.95
2497 2529 6.835819 AAAAGGTAGAGAAAATGCTAACCC 57.164 37.500 0.00 0.00 0.00 4.11
2498 2530 8.242053 GGTAAAAAGGTAGAGAAAATGCTAACC 58.758 37.037 0.00 0.00 0.00 2.85
2499 2531 8.789762 TGGTAAAAAGGTAGAGAAAATGCTAAC 58.210 33.333 0.00 0.00 0.00 2.34
2500 2532 8.927675 TGGTAAAAAGGTAGAGAAAATGCTAA 57.072 30.769 0.00 0.00 0.00 3.09
2501 2533 9.528489 AATGGTAAAAAGGTAGAGAAAATGCTA 57.472 29.630 0.00 0.00 0.00 3.49
2502 2534 8.422577 AATGGTAAAAAGGTAGAGAAAATGCT 57.577 30.769 0.00 0.00 0.00 3.79
2503 2535 9.489084 AAAATGGTAAAAAGGTAGAGAAAATGC 57.511 29.630 0.00 0.00 0.00 3.56
2529 2561 5.221165 GCAGGCCACTGTTTTACTAGAAAAA 60.221 40.000 5.01 0.00 46.62 1.94
2530 2562 4.277423 GCAGGCCACTGTTTTACTAGAAAA 59.723 41.667 5.01 0.00 46.62 2.29
2531 2563 3.818773 GCAGGCCACTGTTTTACTAGAAA 59.181 43.478 5.01 0.00 46.62 2.52
2532 2564 3.181449 TGCAGGCCACTGTTTTACTAGAA 60.181 43.478 5.01 0.00 46.62 2.10
2533 2565 2.370519 TGCAGGCCACTGTTTTACTAGA 59.629 45.455 5.01 0.00 46.62 2.43
2534 2566 2.484264 GTGCAGGCCACTGTTTTACTAG 59.516 50.000 5.01 0.00 46.62 2.57
2535 2567 2.158740 TGTGCAGGCCACTGTTTTACTA 60.159 45.455 5.01 0.00 46.62 1.82
2536 2568 1.318576 GTGCAGGCCACTGTTTTACT 58.681 50.000 5.01 0.00 46.62 2.24
2537 2569 1.028905 TGTGCAGGCCACTGTTTTAC 58.971 50.000 5.01 0.00 46.62 2.01
2538 2570 1.028905 GTGTGCAGGCCACTGTTTTA 58.971 50.000 5.01 0.00 46.62 1.52
2539 2571 0.969917 TGTGTGCAGGCCACTGTTTT 60.970 50.000 5.01 0.00 46.62 2.43
2540 2572 0.756442 ATGTGTGCAGGCCACTGTTT 60.756 50.000 5.01 0.00 46.62 2.83
2541 2573 1.152694 ATGTGTGCAGGCCACTGTT 60.153 52.632 5.01 0.00 46.62 3.16
2542 2574 1.900016 CATGTGTGCAGGCCACTGT 60.900 57.895 5.01 0.00 46.62 3.55
2544 2576 0.606401 GTACATGTGTGCAGGCCACT 60.606 55.000 9.11 0.00 44.92 4.00
2545 2577 0.888736 TGTACATGTGTGCAGGCCAC 60.889 55.000 9.11 0.00 44.90 5.01
2546 2578 0.038021 ATGTACATGTGTGCAGGCCA 59.962 50.000 7.78 0.00 43.50 5.36
2547 2579 0.734889 GATGTACATGTGTGCAGGCC 59.265 55.000 14.43 0.00 43.50 5.19
2548 2580 1.667724 GAGATGTACATGTGTGCAGGC 59.332 52.381 14.43 4.86 43.50 4.85
2549 2581 3.257469 AGAGATGTACATGTGTGCAGG 57.743 47.619 14.43 0.00 43.50 4.85
2550 2582 6.314648 ACAAATAGAGATGTACATGTGTGCAG 59.685 38.462 14.43 3.06 43.50 4.41
2551 2583 6.172630 ACAAATAGAGATGTACATGTGTGCA 58.827 36.000 14.43 6.39 44.32 4.57
2552 2584 6.313658 TGACAAATAGAGATGTACATGTGTGC 59.686 38.462 14.43 0.00 0.00 4.57
2553 2585 7.832503 TGACAAATAGAGATGTACATGTGTG 57.167 36.000 14.43 4.66 0.00 3.82
2554 2586 9.453572 AAATGACAAATAGAGATGTACATGTGT 57.546 29.630 14.43 10.71 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.