Multiple sequence alignment - TraesCS2B01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G143100 chr2B 100.000 4810 0 0 1 4810 109932442 109927633 0.000000e+00 8883
1 TraesCS2B01G143100 chr2B 84.793 1644 186 29 958 2580 109092719 109091119 0.000000e+00 1592
2 TraesCS2B01G143100 chr2B 84.447 1646 191 32 958 2580 109872123 109870520 0.000000e+00 1561
3 TraesCS2B01G143100 chr2B 98.025 709 12 2 3508 4215 109967955 109967248 0.000000e+00 1230
4 TraesCS2B01G143100 chr2B 89.894 188 16 3 4 189 659019695 659019881 6.220000e-59 239
5 TraesCS2B01G143100 chr2B 96.581 117 3 1 4344 4459 109967070 109966954 4.910000e-45 193
6 TraesCS2B01G143100 chr2B 85.088 114 9 5 4199 4310 762384797 762384690 5.090000e-20 110
7 TraesCS2B01G143100 chrUn 94.828 1624 44 17 2873 4459 261755239 261756859 0.000000e+00 2497
8 TraesCS2B01G143100 chrUn 94.828 1624 44 17 2873 4459 271486820 271488440 0.000000e+00 2497
9 TraesCS2B01G143100 chrUn 89.081 1905 159 27 947 2828 261753489 261755367 0.000000e+00 2320
10 TraesCS2B01G143100 chrUn 89.081 1905 159 27 947 2828 271485070 271486948 0.000000e+00 2320
11 TraesCS2B01G143100 chrUn 82.877 1898 234 42 968 2818 235542319 235544172 0.000000e+00 1620
12 TraesCS2B01G143100 chrUn 93.017 358 23 2 4453 4810 261756881 261757236 5.520000e-144 521
13 TraesCS2B01G143100 chrUn 93.017 358 23 2 4453 4810 271488462 271488817 5.520000e-144 521
14 TraesCS2B01G143100 chrUn 78.962 366 62 12 276 632 261752812 261753171 8.050000e-58 235
15 TraesCS2B01G143100 chrUn 81.172 239 38 5 401 632 271484514 271484752 8.220000e-43 185
16 TraesCS2B01G143100 chr2D 91.081 1794 121 19 1052 2831 72426644 72424876 0.000000e+00 2390
17 TraesCS2B01G143100 chr2D 84.326 1914 212 45 968 2831 72375741 72373866 0.000000e+00 1792
18 TraesCS2B01G143100 chr2D 89.030 1185 92 19 1661 2831 72679535 72678375 0.000000e+00 1434
19 TraesCS2B01G143100 chr2D 90.010 981 76 9 2883 3856 72424991 72424026 0.000000e+00 1249
20 TraesCS2B01G143100 chr2D 89.817 982 76 11 2883 3856 72678490 72677525 0.000000e+00 1238
21 TraesCS2B01G143100 chr2D 90.066 906 81 6 2880 3777 72373990 72373086 0.000000e+00 1166
22 TraesCS2B01G143100 chr2D 90.330 879 62 11 813 1669 72686981 72686104 0.000000e+00 1131
23 TraesCS2B01G143100 chr2D 84.665 313 29 5 3850 4161 72677477 72677183 1.310000e-75 294
24 TraesCS2B01G143100 chr2D 84.026 313 26 8 3850 4161 72423978 72423689 3.670000e-71 279
25 TraesCS2B01G143100 chr2D 91.005 189 14 3 3 189 553280715 553280902 7.990000e-63 252
26 TraesCS2B01G143100 chr2D 86.607 112 11 3 4204 4312 179334507 179334617 2.350000e-23 121
27 TraesCS2B01G143100 chr2D 90.323 93 6 3 521 611 72438029 72437938 8.460000e-23 119
28 TraesCS2B01G143100 chr2A 88.435 2032 160 48 848 2831 71155828 71153824 0.000000e+00 2381
29 TraesCS2B01G143100 chr2A 88.285 1912 171 32 962 2831 71310907 71309007 0.000000e+00 2241
30 TraesCS2B01G143100 chr2A 91.618 1527 88 8 964 2481 71345850 71344355 0.000000e+00 2074
31 TraesCS2B01G143100 chr2A 94.725 1327 57 5 2887 4205 71153938 71152617 0.000000e+00 2050
32 TraesCS2B01G143100 chr2A 94.419 1326 61 6 2887 4205 71309121 71307802 0.000000e+00 2026
33 TraesCS2B01G143100 chr2A 91.375 1484 97 15 1063 2522 71261795 71260319 0.000000e+00 2002
34 TraesCS2B01G143100 chr2A 91.240 1484 99 15 1063 2522 71209165 71207689 0.000000e+00 1991
35 TraesCS2B01G143100 chr2A 94.680 921 44 3 3290 4205 71206602 71205682 0.000000e+00 1424
36 TraesCS2B01G143100 chr2A 94.571 921 45 3 3290 4205 71259232 71258312 0.000000e+00 1419
37 TraesCS2B01G143100 chr2A 81.538 455 50 17 189 632 71346724 71346293 1.280000e-90 344
38 TraesCS2B01G143100 chr2A 88.430 242 21 6 657 895 71346298 71346061 7.880000e-73 285
39 TraesCS2B01G143100 chr2A 93.162 117 7 1 4344 4459 71152572 71152456 2.300000e-38 171
40 TraesCS2B01G143100 chr2A 93.162 117 7 1 4344 4459 71205637 71205521 2.300000e-38 171
41 TraesCS2B01G143100 chr2A 93.162 117 7 1 4344 4459 71258267 71258151 2.300000e-38 171
42 TraesCS2B01G143100 chr2A 92.308 117 8 1 4344 4459 71307757 71307641 1.070000e-36 165
43 TraesCS2B01G143100 chr2A 77.256 277 36 16 797 1046 71209425 71209149 2.330000e-28 137
44 TraesCS2B01G143100 chr2A 89.109 101 11 0 797 897 71262055 71261955 5.050000e-25 126
45 TraesCS2B01G143100 chr6D 90.811 185 14 2 6 189 221846779 221846597 1.340000e-60 244
46 TraesCS2B01G143100 chr7D 87.766 188 16 5 3 189 165121404 165121585 3.770000e-51 213
47 TraesCS2B01G143100 chr5A 86.010 193 21 5 3 189 404055008 404054816 8.160000e-48 202
48 TraesCS2B01G143100 chr5B 86.813 182 20 3 8 187 14913112 14912933 2.940000e-47 200
49 TraesCS2B01G143100 chr3D 86.170 188 22 2 3 189 574574325 574574141 2.940000e-47 200
50 TraesCS2B01G143100 chr3D 81.600 250 29 13 4576 4810 603965082 603965329 1.770000e-44 191
51 TraesCS2B01G143100 chr1B 85.484 186 22 5 3 186 573772491 573772309 6.360000e-44 189
52 TraesCS2B01G143100 chr1A 84.343 198 25 4 3 194 531481151 531481348 6.360000e-44 189
53 TraesCS2B01G143100 chr1D 85.950 121 11 2 4204 4318 298576993 298577113 1.820000e-24 124
54 TraesCS2B01G143100 chr1D 86.087 115 14 2 4204 4316 12331973 12331859 6.540000e-24 122
55 TraesCS2B01G143100 chr7A 87.273 110 10 3 4204 4311 5147603 5147710 6.540000e-24 122
56 TraesCS2B01G143100 chr6B 84.874 119 9 5 4201 4317 20829249 20829138 1.420000e-20 111
57 TraesCS2B01G143100 chr3A 84.615 117 13 3 4204 4315 37802202 37802086 1.420000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G143100 chr2B 109927633 109932442 4809 True 8883.000000 8883 100.000000 1 4810 1 chr2B.!!$R3 4809
1 TraesCS2B01G143100 chr2B 109091119 109092719 1600 True 1592.000000 1592 84.793000 958 2580 1 chr2B.!!$R1 1622
2 TraesCS2B01G143100 chr2B 109870520 109872123 1603 True 1561.000000 1561 84.447000 958 2580 1 chr2B.!!$R2 1622
3 TraesCS2B01G143100 chr2B 109966954 109967955 1001 True 711.500000 1230 97.303000 3508 4459 2 chr2B.!!$R5 951
4 TraesCS2B01G143100 chrUn 235542319 235544172 1853 False 1620.000000 1620 82.877000 968 2818 1 chrUn.!!$F1 1850
5 TraesCS2B01G143100 chrUn 261752812 261757236 4424 False 1393.250000 2497 88.972000 276 4810 4 chrUn.!!$F2 4534
6 TraesCS2B01G143100 chrUn 271484514 271488817 4303 False 1380.750000 2497 89.524500 401 4810 4 chrUn.!!$F3 4409
7 TraesCS2B01G143100 chr2D 72373086 72375741 2655 True 1479.000000 1792 87.196000 968 3777 2 chr2D.!!$R3 2809
8 TraesCS2B01G143100 chr2D 72423689 72426644 2955 True 1306.000000 2390 88.372333 1052 4161 3 chr2D.!!$R4 3109
9 TraesCS2B01G143100 chr2D 72686104 72686981 877 True 1131.000000 1131 90.330000 813 1669 1 chr2D.!!$R2 856
10 TraesCS2B01G143100 chr2D 72677183 72679535 2352 True 988.666667 1434 87.837333 1661 4161 3 chr2D.!!$R5 2500
11 TraesCS2B01G143100 chr2A 71152456 71155828 3372 True 1534.000000 2381 92.107333 848 4459 3 chr2A.!!$R1 3611
12 TraesCS2B01G143100 chr2A 71307641 71310907 3266 True 1477.333333 2241 91.670667 962 4459 3 chr2A.!!$R4 3497
13 TraesCS2B01G143100 chr2A 71205521 71209425 3904 True 930.750000 1991 89.084500 797 4459 4 chr2A.!!$R2 3662
14 TraesCS2B01G143100 chr2A 71258151 71262055 3904 True 929.500000 2002 92.054250 797 4459 4 chr2A.!!$R3 3662
15 TraesCS2B01G143100 chr2A 71344355 71346724 2369 True 901.000000 2074 87.195333 189 2481 3 chr2A.!!$R5 2292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.040157 TCGTTCGACCGTGTACTTGG 60.040 55.0 1.29 0.0 0.00 3.61 F
570 579 0.108615 CGGATGAGGTGAGTGTGTCC 60.109 60.0 0.00 0.0 0.00 4.02 F
678 695 0.109873 ACGAAGCTGTCCTTACGTCG 60.110 55.0 0.00 0.0 34.52 5.12 F
897 959 0.322636 TTTCGCCGAGTCTCTCTCCT 60.323 55.0 0.00 0.0 39.84 3.69 F
932 994 0.417437 TCCATCCCTTCCTCCACAGA 59.583 55.0 0.00 0.0 0.00 3.41 F
2091 2336 0.551396 AGTATGGCTACAAAGGGGCC 59.449 55.0 0.00 0.0 45.45 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2333 1.039856 TTTCACTGGAAAGCTTGGCC 58.960 50.000 0.0 5.62 38.07 5.36 R
2303 2569 2.816087 TGTGAAGATCAGAAAAGGCTGC 59.184 45.455 0.0 0.00 35.86 5.25 R
2630 3347 0.038166 ATGTGAAGGGACGTTGCCAT 59.962 50.000 0.0 0.00 0.00 4.40 R
2631 3348 0.179004 AATGTGAAGGGACGTTGCCA 60.179 50.000 0.0 0.00 0.00 4.92 R
2632 3349 1.816074 TAATGTGAAGGGACGTTGCC 58.184 50.000 0.0 0.00 0.00 4.52 R
3894 4788 0.175989 AGAGGGCGTCGAGAATTTCC 59.824 55.000 0.0 0.00 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.753701 TGGGGCATTGTGTAGCGT 59.246 55.556 0.00 0.00 0.00 5.07
18 19 1.074072 TGGGGCATTGTGTAGCGTT 59.926 52.632 0.00 0.00 0.00 4.84
19 20 1.240641 TGGGGCATTGTGTAGCGTTG 61.241 55.000 0.00 0.00 0.00 4.10
20 21 1.241315 GGGGCATTGTGTAGCGTTGT 61.241 55.000 0.00 0.00 0.00 3.32
21 22 1.444836 GGGCATTGTGTAGCGTTGTA 58.555 50.000 0.00 0.00 0.00 2.41
22 23 1.129811 GGGCATTGTGTAGCGTTGTAC 59.870 52.381 0.00 0.00 0.00 2.90
23 24 2.073816 GGCATTGTGTAGCGTTGTACT 58.926 47.619 0.00 0.00 0.00 2.73
24 25 2.093783 GGCATTGTGTAGCGTTGTACTC 59.906 50.000 0.00 0.00 0.00 2.59
25 26 2.222508 GCATTGTGTAGCGTTGTACTCG 60.223 50.000 0.00 0.40 0.00 4.18
26 27 2.054687 TTGTGTAGCGTTGTACTCGG 57.945 50.000 11.50 0.00 0.00 4.63
27 28 0.953727 TGTGTAGCGTTGTACTCGGT 59.046 50.000 16.46 16.46 41.68 4.69
28 29 1.337703 TGTGTAGCGTTGTACTCGGTT 59.662 47.619 17.16 0.00 39.62 4.44
29 30 2.223782 TGTGTAGCGTTGTACTCGGTTT 60.224 45.455 17.16 0.00 39.62 3.27
30 31 2.796593 GTGTAGCGTTGTACTCGGTTTT 59.203 45.455 17.16 0.00 39.62 2.43
31 32 3.052036 TGTAGCGTTGTACTCGGTTTTC 58.948 45.455 17.16 10.86 39.62 2.29
32 33 1.505425 AGCGTTGTACTCGGTTTTCC 58.495 50.000 9.17 0.00 35.53 3.13
33 34 0.514255 GCGTTGTACTCGGTTTTCCC 59.486 55.000 11.50 0.00 36.42 3.97
34 35 1.868469 CGTTGTACTCGGTTTTCCCA 58.132 50.000 0.00 0.00 36.42 4.37
35 36 2.211806 CGTTGTACTCGGTTTTCCCAA 58.788 47.619 0.00 0.00 36.42 4.12
36 37 2.809696 CGTTGTACTCGGTTTTCCCAAT 59.190 45.455 0.00 0.00 36.42 3.16
37 38 3.364565 CGTTGTACTCGGTTTTCCCAATG 60.365 47.826 0.00 0.00 36.42 2.82
38 39 2.156098 TGTACTCGGTTTTCCCAATGC 58.844 47.619 0.00 0.00 36.42 3.56
39 40 2.224670 TGTACTCGGTTTTCCCAATGCT 60.225 45.455 0.00 0.00 36.42 3.79
40 41 1.995376 ACTCGGTTTTCCCAATGCTT 58.005 45.000 0.00 0.00 36.42 3.91
41 42 2.316108 ACTCGGTTTTCCCAATGCTTT 58.684 42.857 0.00 0.00 36.42 3.51
42 43 2.296190 ACTCGGTTTTCCCAATGCTTTC 59.704 45.455 0.00 0.00 36.42 2.62
43 44 2.558359 CTCGGTTTTCCCAATGCTTTCT 59.442 45.455 0.00 0.00 36.42 2.52
44 45 2.962421 TCGGTTTTCCCAATGCTTTCTT 59.038 40.909 0.00 0.00 36.42 2.52
45 46 3.386402 TCGGTTTTCCCAATGCTTTCTTT 59.614 39.130 0.00 0.00 36.42 2.52
46 47 3.740832 CGGTTTTCCCAATGCTTTCTTTC 59.259 43.478 0.00 0.00 36.42 2.62
47 48 3.740832 GGTTTTCCCAATGCTTTCTTTCG 59.259 43.478 0.00 0.00 0.00 3.46
48 49 3.658757 TTTCCCAATGCTTTCTTTCGG 57.341 42.857 0.00 0.00 0.00 4.30
49 50 2.286365 TCCCAATGCTTTCTTTCGGT 57.714 45.000 0.00 0.00 0.00 4.69
50 51 3.426787 TCCCAATGCTTTCTTTCGGTA 57.573 42.857 0.00 0.00 0.00 4.02
51 52 3.343617 TCCCAATGCTTTCTTTCGGTAG 58.656 45.455 0.00 0.00 0.00 3.18
52 53 2.159379 CCCAATGCTTTCTTTCGGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
53 54 2.476185 CCAATGCTTTCTTTCGGTAGCG 60.476 50.000 8.29 8.29 36.43 4.26
54 55 2.094762 ATGCTTTCTTTCGGTAGCGT 57.905 45.000 14.79 0.00 36.43 5.07
55 56 2.728690 TGCTTTCTTTCGGTAGCGTA 57.271 45.000 14.79 1.01 36.43 4.42
56 57 2.602878 TGCTTTCTTTCGGTAGCGTAG 58.397 47.619 14.79 12.67 36.43 3.51
57 58 2.029649 TGCTTTCTTTCGGTAGCGTAGT 60.030 45.455 14.79 0.00 36.43 2.73
58 59 2.597748 GCTTTCTTTCGGTAGCGTAGTC 59.402 50.000 14.79 2.34 0.00 2.59
59 60 2.532531 TTCTTTCGGTAGCGTAGTCG 57.467 50.000 14.79 0.40 40.37 4.18
60 61 1.442769 TCTTTCGGTAGCGTAGTCGT 58.557 50.000 14.79 0.00 39.49 4.34
61 62 1.129251 TCTTTCGGTAGCGTAGTCGTG 59.871 52.381 14.79 0.00 39.49 4.35
62 63 0.874390 TTTCGGTAGCGTAGTCGTGT 59.126 50.000 14.79 0.00 39.49 4.49
63 64 0.874390 TTCGGTAGCGTAGTCGTGTT 59.126 50.000 14.79 0.00 39.49 3.32
64 65 0.443869 TCGGTAGCGTAGTCGTGTTC 59.556 55.000 14.79 0.00 39.49 3.18
65 66 0.445436 CGGTAGCGTAGTCGTGTTCT 59.555 55.000 6.07 0.00 39.49 3.01
66 67 1.789410 CGGTAGCGTAGTCGTGTTCTG 60.789 57.143 6.07 0.00 39.49 3.02
67 68 1.257539 GTAGCGTAGTCGTGTTCTGC 58.742 55.000 0.00 0.00 39.49 4.26
68 69 0.876399 TAGCGTAGTCGTGTTCTGCA 59.124 50.000 0.00 0.00 39.49 4.41
69 70 0.243907 AGCGTAGTCGTGTTCTGCAT 59.756 50.000 0.00 0.00 39.49 3.96
70 71 0.366871 GCGTAGTCGTGTTCTGCATG 59.633 55.000 0.00 0.00 39.49 4.06
71 72 1.977188 CGTAGTCGTGTTCTGCATGA 58.023 50.000 0.00 0.00 40.54 3.07
72 73 2.530177 CGTAGTCGTGTTCTGCATGAT 58.470 47.619 0.00 0.00 44.11 2.45
73 74 2.923655 CGTAGTCGTGTTCTGCATGATT 59.076 45.455 0.00 0.00 44.11 2.57
74 75 4.102649 CGTAGTCGTGTTCTGCATGATTA 58.897 43.478 0.00 0.00 44.11 1.75
75 76 4.205181 CGTAGTCGTGTTCTGCATGATTAG 59.795 45.833 0.00 0.00 44.11 1.73
76 77 4.456280 AGTCGTGTTCTGCATGATTAGA 57.544 40.909 0.00 0.00 44.11 2.10
77 78 5.016051 AGTCGTGTTCTGCATGATTAGAT 57.984 39.130 0.00 0.00 44.11 1.98
78 79 5.423015 AGTCGTGTTCTGCATGATTAGATT 58.577 37.500 0.00 0.00 44.11 2.40
79 80 6.573434 AGTCGTGTTCTGCATGATTAGATTA 58.427 36.000 0.00 0.00 44.11 1.75
80 81 7.212976 AGTCGTGTTCTGCATGATTAGATTAT 58.787 34.615 0.00 0.00 44.11 1.28
81 82 7.383572 AGTCGTGTTCTGCATGATTAGATTATC 59.616 37.037 0.00 0.00 44.11 1.75
82 83 7.383572 GTCGTGTTCTGCATGATTAGATTATCT 59.616 37.037 0.00 0.00 44.11 1.98
83 84 7.928167 TCGTGTTCTGCATGATTAGATTATCTT 59.072 33.333 0.00 0.00 38.14 2.40
84 85 8.008279 CGTGTTCTGCATGATTAGATTATCTTG 58.992 37.037 0.00 0.00 36.21 3.02
85 86 8.288208 GTGTTCTGCATGATTAGATTATCTTGG 58.712 37.037 0.00 0.00 32.94 3.61
86 87 7.446319 TGTTCTGCATGATTAGATTATCTTGGG 59.554 37.037 0.00 0.00 32.94 4.12
87 88 7.320384 TCTGCATGATTAGATTATCTTGGGA 57.680 36.000 0.00 0.00 32.94 4.37
88 89 7.925622 TCTGCATGATTAGATTATCTTGGGAT 58.074 34.615 0.00 0.00 32.94 3.85
89 90 8.045507 TCTGCATGATTAGATTATCTTGGGATC 58.954 37.037 0.00 1.17 32.94 3.36
90 91 6.820152 TGCATGATTAGATTATCTTGGGATCG 59.180 38.462 0.00 0.00 32.94 3.69
91 92 7.044181 GCATGATTAGATTATCTTGGGATCGA 58.956 38.462 0.00 0.00 32.94 3.59
92 93 7.010923 GCATGATTAGATTATCTTGGGATCGAC 59.989 40.741 0.00 0.00 32.94 4.20
93 94 7.539034 TGATTAGATTATCTTGGGATCGACA 57.461 36.000 0.00 0.00 33.71 4.35
94 95 8.138928 TGATTAGATTATCTTGGGATCGACAT 57.861 34.615 0.00 0.00 33.71 3.06
95 96 8.597167 TGATTAGATTATCTTGGGATCGACATT 58.403 33.333 0.00 0.00 33.71 2.71
96 97 8.783833 ATTAGATTATCTTGGGATCGACATTG 57.216 34.615 0.00 0.00 33.71 2.82
97 98 6.179906 AGATTATCTTGGGATCGACATTGT 57.820 37.500 0.00 0.00 33.71 2.71
98 99 7.303182 AGATTATCTTGGGATCGACATTGTA 57.697 36.000 0.00 0.00 33.71 2.41
99 100 7.911651 AGATTATCTTGGGATCGACATTGTAT 58.088 34.615 0.00 0.00 33.71 2.29
100 101 7.821359 AGATTATCTTGGGATCGACATTGTATG 59.179 37.037 0.00 0.00 33.71 2.39
101 102 5.551305 ATCTTGGGATCGACATTGTATGA 57.449 39.130 0.00 0.00 0.00 2.15
102 103 4.948847 TCTTGGGATCGACATTGTATGAG 58.051 43.478 0.00 0.00 0.00 2.90
103 104 4.649218 TCTTGGGATCGACATTGTATGAGA 59.351 41.667 0.00 0.00 0.00 3.27
104 105 4.590850 TGGGATCGACATTGTATGAGAG 57.409 45.455 0.00 0.00 0.00 3.20
105 106 3.243873 TGGGATCGACATTGTATGAGAGC 60.244 47.826 0.00 0.00 0.00 4.09
106 107 3.006323 GGGATCGACATTGTATGAGAGCT 59.994 47.826 0.00 0.00 31.57 4.09
107 108 4.218635 GGGATCGACATTGTATGAGAGCTA 59.781 45.833 0.00 0.00 31.57 3.32
108 109 5.157781 GGATCGACATTGTATGAGAGCTAC 58.842 45.833 0.00 0.00 31.57 3.58
109 110 4.569761 TCGACATTGTATGAGAGCTACC 57.430 45.455 0.00 0.00 0.00 3.18
110 111 4.207955 TCGACATTGTATGAGAGCTACCT 58.792 43.478 0.00 0.00 0.00 3.08
111 112 4.276183 TCGACATTGTATGAGAGCTACCTC 59.724 45.833 0.00 0.00 38.42 3.85
112 113 4.036852 CGACATTGTATGAGAGCTACCTCA 59.963 45.833 7.51 7.51 46.02 3.86
113 114 5.269505 ACATTGTATGAGAGCTACCTCAC 57.730 43.478 7.24 0.00 44.93 3.51
114 115 4.100189 ACATTGTATGAGAGCTACCTCACC 59.900 45.833 7.24 2.91 44.93 4.02
115 116 3.382083 TGTATGAGAGCTACCTCACCA 57.618 47.619 7.24 5.21 44.93 4.17
116 117 3.916035 TGTATGAGAGCTACCTCACCAT 58.084 45.455 7.24 0.00 44.93 3.55
117 118 3.891977 TGTATGAGAGCTACCTCACCATC 59.108 47.826 7.24 0.83 44.93 3.51
118 119 1.393603 TGAGAGCTACCTCACCATCG 58.606 55.000 1.08 0.00 40.68 3.84
119 120 1.341089 TGAGAGCTACCTCACCATCGT 60.341 52.381 1.08 0.00 40.68 3.73
120 121 1.066303 GAGAGCTACCTCACCATCGTG 59.934 57.143 0.00 0.00 40.68 4.35
121 122 0.818296 GAGCTACCTCACCATCGTGT 59.182 55.000 0.00 0.00 41.09 4.49
122 123 2.022195 GAGCTACCTCACCATCGTGTA 58.978 52.381 0.00 0.00 41.09 2.90
123 124 2.623889 GAGCTACCTCACCATCGTGTAT 59.376 50.000 0.00 0.00 41.09 2.29
124 125 2.623889 AGCTACCTCACCATCGTGTATC 59.376 50.000 0.00 0.00 41.09 2.24
125 126 2.604855 GCTACCTCACCATCGTGTATCG 60.605 54.545 0.00 0.00 41.09 2.92
126 127 1.471119 ACCTCACCATCGTGTATCGT 58.529 50.000 0.00 0.00 41.09 3.73
127 128 1.822990 ACCTCACCATCGTGTATCGTT 59.177 47.619 0.00 0.00 41.09 3.85
128 129 2.159282 ACCTCACCATCGTGTATCGTTC 60.159 50.000 0.00 0.00 41.09 3.95
129 130 2.109463 CTCACCATCGTGTATCGTTCG 58.891 52.381 0.00 0.00 41.09 3.95
130 131 1.738908 TCACCATCGTGTATCGTTCGA 59.261 47.619 0.00 0.00 41.09 3.71
131 132 1.844357 CACCATCGTGTATCGTTCGAC 59.156 52.381 0.00 0.00 40.80 4.20
132 133 1.202222 ACCATCGTGTATCGTTCGACC 60.202 52.381 0.00 0.00 40.80 4.79
133 134 1.110085 CATCGTGTATCGTTCGACCG 58.890 55.000 0.00 0.00 40.80 4.79
134 135 0.729116 ATCGTGTATCGTTCGACCGT 59.271 50.000 1.29 0.00 40.80 4.83
135 136 0.179217 TCGTGTATCGTTCGACCGTG 60.179 55.000 1.29 0.00 40.80 4.94
136 137 0.453282 CGTGTATCGTTCGACCGTGT 60.453 55.000 1.29 0.00 34.52 4.49
137 138 1.201910 CGTGTATCGTTCGACCGTGTA 60.202 52.381 1.29 0.00 34.52 2.90
138 139 2.169179 GTGTATCGTTCGACCGTGTAC 58.831 52.381 1.29 7.82 0.00 2.90
139 140 2.076100 TGTATCGTTCGACCGTGTACT 58.924 47.619 16.37 0.00 0.00 2.73
140 141 2.483877 TGTATCGTTCGACCGTGTACTT 59.516 45.455 16.37 0.00 0.00 2.24
141 142 1.973138 ATCGTTCGACCGTGTACTTG 58.027 50.000 1.29 0.00 0.00 3.16
142 143 0.040157 TCGTTCGACCGTGTACTTGG 60.040 55.000 1.29 0.00 0.00 3.61
143 144 0.318107 CGTTCGACCGTGTACTTGGT 60.318 55.000 9.03 9.03 42.42 3.67
144 145 1.856802 GTTCGACCGTGTACTTGGTT 58.143 50.000 10.36 0.00 38.99 3.67
145 146 2.204237 GTTCGACCGTGTACTTGGTTT 58.796 47.619 10.36 0.00 38.99 3.27
146 147 1.855513 TCGACCGTGTACTTGGTTTG 58.144 50.000 10.36 7.27 38.99 2.93
147 148 0.863144 CGACCGTGTACTTGGTTTGG 59.137 55.000 10.36 1.73 38.99 3.28
148 149 1.232119 GACCGTGTACTTGGTTTGGG 58.768 55.000 10.36 0.00 38.99 4.12
149 150 0.179012 ACCGTGTACTTGGTTTGGGG 60.179 55.000 4.04 0.00 33.81 4.96
150 151 0.108963 CCGTGTACTTGGTTTGGGGA 59.891 55.000 0.00 0.00 0.00 4.81
151 152 1.271707 CCGTGTACTTGGTTTGGGGAT 60.272 52.381 0.00 0.00 0.00 3.85
152 153 2.510613 CGTGTACTTGGTTTGGGGATT 58.489 47.619 0.00 0.00 0.00 3.01
153 154 2.227865 CGTGTACTTGGTTTGGGGATTG 59.772 50.000 0.00 0.00 0.00 2.67
154 155 2.029380 GTGTACTTGGTTTGGGGATTGC 60.029 50.000 0.00 0.00 0.00 3.56
155 156 2.158385 TGTACTTGGTTTGGGGATTGCT 60.158 45.455 0.00 0.00 0.00 3.91
156 157 2.101640 ACTTGGTTTGGGGATTGCTT 57.898 45.000 0.00 0.00 0.00 3.91
157 158 3.252554 ACTTGGTTTGGGGATTGCTTA 57.747 42.857 0.00 0.00 0.00 3.09
158 159 3.790126 ACTTGGTTTGGGGATTGCTTAT 58.210 40.909 0.00 0.00 0.00 1.73
159 160 4.941713 ACTTGGTTTGGGGATTGCTTATA 58.058 39.130 0.00 0.00 0.00 0.98
160 161 5.528337 ACTTGGTTTGGGGATTGCTTATAT 58.472 37.500 0.00 0.00 0.00 0.86
161 162 6.678547 ACTTGGTTTGGGGATTGCTTATATA 58.321 36.000 0.00 0.00 0.00 0.86
162 163 7.305246 ACTTGGTTTGGGGATTGCTTATATAT 58.695 34.615 0.00 0.00 0.00 0.86
163 164 8.452868 ACTTGGTTTGGGGATTGCTTATATATA 58.547 33.333 0.00 0.00 0.00 0.86
164 165 9.308000 CTTGGTTTGGGGATTGCTTATATATAA 57.692 33.333 5.10 5.10 0.00 0.98
165 166 9.661954 TTGGTTTGGGGATTGCTTATATATAAA 57.338 29.630 6.63 0.00 0.00 1.40
166 167 9.308000 TGGTTTGGGGATTGCTTATATATAAAG 57.692 33.333 6.63 3.00 0.00 1.85
174 175 3.788937 GCTTATATATAAAGCGGGGCGA 58.211 45.455 6.63 0.00 39.92 5.54
175 176 4.186159 GCTTATATATAAAGCGGGGCGAA 58.814 43.478 6.63 0.00 39.92 4.70
176 177 4.632688 GCTTATATATAAAGCGGGGCGAAA 59.367 41.667 6.63 0.00 39.92 3.46
177 178 5.220605 GCTTATATATAAAGCGGGGCGAAAG 60.221 44.000 6.63 0.00 39.92 2.62
201 202 2.817258 TGTTTCGAGGTTTTATGGCCTG 59.183 45.455 3.32 0.00 34.81 4.85
219 220 4.100084 TGCTGGCAGACGGGGATG 62.100 66.667 20.86 0.00 0.00 3.51
231 232 1.339727 ACGGGGATGTAAGAGCAAACC 60.340 52.381 0.00 0.00 0.00 3.27
242 243 6.008331 TGTAAGAGCAAACCTAGTAGAGTCA 58.992 40.000 0.00 0.00 0.00 3.41
246 247 4.097418 AGCAAACCTAGTAGAGTCACCAT 58.903 43.478 0.00 0.00 0.00 3.55
248 249 5.900123 AGCAAACCTAGTAGAGTCACCATAT 59.100 40.000 0.00 0.00 0.00 1.78
250 251 6.480320 GCAAACCTAGTAGAGTCACCATATTG 59.520 42.308 0.00 0.00 0.00 1.90
257 258 3.461061 AGAGTCACCATATTGTGCATCG 58.539 45.455 2.03 0.00 36.17 3.84
265 266 0.254462 TATTGTGCATCGGAAGGCCA 59.746 50.000 5.01 0.00 0.00 5.36
266 267 0.611618 ATTGTGCATCGGAAGGCCAA 60.612 50.000 5.01 6.87 0.00 4.52
303 306 3.495629 CCATTTCTGCTAGGCTGCTATCA 60.496 47.826 0.00 0.00 0.00 2.15
318 321 6.151691 GCTGCTATCAACATTGAGTCAAAAA 58.848 36.000 10.14 0.00 41.08 1.94
324 327 9.694520 CTATCAACATTGAGTCAAAAATACTCG 57.305 33.333 10.14 0.00 45.19 4.18
364 367 0.530744 CCCTCCGACGACTGATTCAA 59.469 55.000 0.00 0.00 0.00 2.69
375 378 3.613193 CGACTGATTCAACCTTACGGTGA 60.613 47.826 0.00 0.00 44.73 4.02
388 391 4.477975 GGTGAGCGTCGTCCTCGG 62.478 72.222 0.00 0.00 37.69 4.63
396 399 1.212229 GTCGTCCTCGGTCAACTCC 59.788 63.158 0.00 0.00 37.69 3.85
409 412 1.616865 TCAACTCCAAGTAGTCCCACG 59.383 52.381 0.00 0.00 0.00 4.94
416 419 1.002087 CAAGTAGTCCCACGCCTTCTT 59.998 52.381 0.00 0.00 0.00 2.52
421 424 1.841556 TCCCACGCCTTCTTCCAGT 60.842 57.895 0.00 0.00 0.00 4.00
429 432 2.494073 CGCCTTCTTCCAGTACTCTCTT 59.506 50.000 0.00 0.00 0.00 2.85
451 454 1.461091 CGCGGGCCTCATAGGTCTTA 61.461 60.000 0.84 0.00 40.65 2.10
453 456 0.680061 CGGGCCTCATAGGTCTTACC 59.320 60.000 0.84 0.00 40.65 2.85
483 487 3.101209 CCGCACCAACATGATCGG 58.899 61.111 0.00 0.00 0.00 4.18
484 488 1.449423 CCGCACCAACATGATCGGA 60.449 57.895 0.00 0.00 39.23 4.55
493 500 2.015736 ACATGATCGGAGTTGAGTGC 57.984 50.000 0.00 0.00 0.00 4.40
546 555 2.732658 GGTGTCGACCGGTGAAGT 59.267 61.111 14.63 0.00 30.61 3.01
556 565 2.438434 GGTGAAGTGGGGCGGATG 60.438 66.667 0.00 0.00 0.00 3.51
570 579 0.108615 CGGATGAGGTGAGTGTGTCC 60.109 60.000 0.00 0.00 0.00 4.02
580 589 4.077184 GTGTGTCCGCGATGGGGA 62.077 66.667 8.23 0.00 42.39 4.81
593 609 4.393778 GGGGACGGGGGACAGAGA 62.394 72.222 0.00 0.00 0.00 3.10
632 649 3.938963 TCCGTAACTCTAATTCCGTACGT 59.061 43.478 15.21 0.00 0.00 3.57
633 650 5.113383 TCCGTAACTCTAATTCCGTACGTA 58.887 41.667 15.21 1.84 0.00 3.57
634 651 5.006358 TCCGTAACTCTAATTCCGTACGTAC 59.994 44.000 15.90 15.90 0.00 3.67
651 668 7.269435 GTACGTACGAAGCTATTTGAAAAGA 57.731 36.000 24.41 0.00 0.00 2.52
652 669 6.774354 ACGTACGAAGCTATTTGAAAAGAA 57.226 33.333 24.41 0.00 0.00 2.52
653 670 7.181143 ACGTACGAAGCTATTTGAAAAGAAA 57.819 32.000 24.41 0.00 0.00 2.52
654 671 7.632721 ACGTACGAAGCTATTTGAAAAGAAAA 58.367 30.769 24.41 0.00 0.00 2.29
655 672 8.124199 ACGTACGAAGCTATTTGAAAAGAAAAA 58.876 29.630 24.41 0.00 0.00 1.94
656 673 8.407458 CGTACGAAGCTATTTGAAAAGAAAAAC 58.593 33.333 10.44 0.00 0.00 2.43
657 674 7.376530 ACGAAGCTATTTGAAAAGAAAAACG 57.623 32.000 0.00 0.00 0.00 3.60
658 675 6.970613 ACGAAGCTATTTGAAAAGAAAAACGT 59.029 30.769 0.00 0.00 0.00 3.99
659 676 8.124199 ACGAAGCTATTTGAAAAGAAAAACGTA 58.876 29.630 0.00 0.00 0.00 3.57
660 677 8.407458 CGAAGCTATTTGAAAAGAAAAACGTAC 58.593 33.333 0.00 0.00 0.00 3.67
661 678 7.831750 AGCTATTTGAAAAGAAAAACGTACG 57.168 32.000 15.01 15.01 0.00 3.67
671 688 2.521105 AAAACGTACGAAGCTGTCCT 57.479 45.000 24.41 0.00 0.00 3.85
674 691 2.626088 ACGTACGAAGCTGTCCTTAC 57.374 50.000 24.41 0.00 32.78 2.34
678 695 0.109873 ACGAAGCTGTCCTTACGTCG 60.110 55.000 0.00 0.00 34.52 5.12
702 719 2.022195 GTCTCTCGGTATACACTGCCA 58.978 52.381 5.01 0.00 0.00 4.92
703 720 2.022195 TCTCTCGGTATACACTGCCAC 58.978 52.381 5.01 0.00 0.00 5.01
704 721 1.749063 CTCTCGGTATACACTGCCACA 59.251 52.381 5.01 0.00 0.00 4.17
706 723 2.764010 TCTCGGTATACACTGCCACAAT 59.236 45.455 5.01 0.00 0.00 2.71
709 726 5.087391 TCGGTATACACTGCCACAATTTA 57.913 39.130 5.01 0.00 0.00 1.40
756 775 2.868442 GCCACAAATTTACAAACGGGGG 60.868 50.000 0.00 0.00 0.00 5.40
897 959 0.322636 TTTCGCCGAGTCTCTCTCCT 60.323 55.000 0.00 0.00 39.84 3.69
899 961 1.153249 CGCCGAGTCTCTCTCCTCT 60.153 63.158 0.00 0.00 39.84 3.69
902 964 1.388547 CCGAGTCTCTCTCCTCTTGG 58.611 60.000 0.00 0.00 39.84 3.61
904 966 2.092861 CCGAGTCTCTCTCCTCTTGGTA 60.093 54.545 0.00 0.00 39.84 3.25
905 967 3.611970 CGAGTCTCTCTCCTCTTGGTAA 58.388 50.000 0.00 0.00 39.84 2.85
906 968 3.625764 CGAGTCTCTCTCCTCTTGGTAAG 59.374 52.174 0.00 0.00 39.84 2.34
928 990 1.225373 CCATTCCATCCCTTCCTCCA 58.775 55.000 0.00 0.00 0.00 3.86
930 992 1.565759 CATTCCATCCCTTCCTCCACA 59.434 52.381 0.00 0.00 0.00 4.17
931 993 1.289160 TTCCATCCCTTCCTCCACAG 58.711 55.000 0.00 0.00 0.00 3.66
932 994 0.417437 TCCATCCCTTCCTCCACAGA 59.583 55.000 0.00 0.00 0.00 3.41
935 997 2.121948 CATCCCTTCCTCCACAGATCA 58.878 52.381 0.00 0.00 0.00 2.92
936 998 1.573108 TCCCTTCCTCCACAGATCAC 58.427 55.000 0.00 0.00 0.00 3.06
937 999 1.203300 TCCCTTCCTCCACAGATCACA 60.203 52.381 0.00 0.00 0.00 3.58
939 1001 2.040278 CCCTTCCTCCACAGATCACAAA 59.960 50.000 0.00 0.00 0.00 2.83
940 1002 3.498481 CCCTTCCTCCACAGATCACAAAA 60.498 47.826 0.00 0.00 0.00 2.44
943 1005 4.916041 TCCTCCACAGATCACAAAATCT 57.084 40.909 0.00 0.00 36.41 2.40
944 1006 4.836825 TCCTCCACAGATCACAAAATCTC 58.163 43.478 0.00 0.00 33.68 2.75
947 1009 4.326826 TCCACAGATCACAAAATCTCCAC 58.673 43.478 0.00 0.00 33.68 4.02
950 1012 4.092529 CACAGATCACAAAATCTCCACGAG 59.907 45.833 0.00 0.00 33.68 4.18
951 1013 3.620374 CAGATCACAAAATCTCCACGAGG 59.380 47.826 0.00 0.00 33.68 4.63
954 1016 0.673644 ACAAAATCTCCACGAGGCCG 60.674 55.000 0.00 0.00 42.50 6.13
956 1018 4.514577 AATCTCCACGAGGCCGCG 62.515 66.667 28.09 28.09 39.95 6.46
1654 1896 3.685836 TCATGCTCAAATGCAAGATCG 57.314 42.857 0.00 0.00 46.61 3.69
2042 2287 4.160736 TCGATAGCGATGACAATACCTG 57.839 45.455 0.00 0.00 42.51 4.00
2088 2333 3.088532 TGCAAAGTATGGCTACAAAGGG 58.911 45.455 0.00 0.00 0.00 3.95
2089 2334 2.427095 GCAAAGTATGGCTACAAAGGGG 59.573 50.000 0.00 0.00 0.00 4.79
2090 2335 2.427095 CAAAGTATGGCTACAAAGGGGC 59.573 50.000 0.00 0.00 0.00 5.80
2091 2336 0.551396 AGTATGGCTACAAAGGGGCC 59.449 55.000 0.00 0.00 45.45 5.80
2104 2352 2.278330 GGGGCCAAGCTTTCCAGTG 61.278 63.158 4.39 0.00 0.00 3.66
2107 2355 1.039856 GGCCAAGCTTTCCAGTGAAA 58.960 50.000 0.00 0.00 38.14 2.69
2174 2422 3.543680 AGGTGGACGTCATATTCTTGG 57.456 47.619 18.91 0.00 0.00 3.61
2236 2490 2.295909 GCTGGAGAGGTATAGCTGTCAG 59.704 54.545 25.15 20.49 33.53 3.51
2279 2545 9.151471 CTCTATCTTTGAGTACGAAAATTTCCA 57.849 33.333 0.00 0.00 0.00 3.53
2282 2548 7.504924 TCTTTGAGTACGAAAATTTCCATGT 57.495 32.000 0.00 0.00 0.00 3.21
2318 2593 5.772521 TGTTTTTAGCAGCCTTTTCTGATC 58.227 37.500 0.00 0.00 36.19 2.92
2321 2596 5.886960 TTTAGCAGCCTTTTCTGATCTTC 57.113 39.130 0.00 0.00 36.19 2.87
2322 2597 3.430042 AGCAGCCTTTTCTGATCTTCA 57.570 42.857 0.00 0.00 36.19 3.02
2330 2605 5.917447 GCCTTTTCTGATCTTCACAAAAGAC 59.083 40.000 15.27 4.76 41.67 3.01
2354 2629 7.648142 ACATTTATGTTGCTCCCAATATAACG 58.352 34.615 5.49 3.92 41.60 3.18
2419 2702 1.946768 TGGTTAGCACAGTTGACTTGC 59.053 47.619 9.02 9.02 36.45 4.01
2510 2805 7.563888 AATCAATGAGATATGGAAGTGTGTG 57.436 36.000 0.00 0.00 35.39 3.82
2511 2806 6.053632 TCAATGAGATATGGAAGTGTGTGT 57.946 37.500 0.00 0.00 0.00 3.72
2512 2807 5.876460 TCAATGAGATATGGAAGTGTGTGTG 59.124 40.000 0.00 0.00 0.00 3.82
2524 3212 1.064060 GTGTGTGTGGCTTCAACAGAC 59.936 52.381 0.00 0.00 33.20 3.51
2532 3227 4.458989 TGTGGCTTCAACAGACCATTATTC 59.541 41.667 0.00 0.00 33.06 1.75
2534 3229 5.126061 GTGGCTTCAACAGACCATTATTCAT 59.874 40.000 0.00 0.00 33.06 2.57
2535 3230 5.357878 TGGCTTCAACAGACCATTATTCATC 59.642 40.000 0.00 0.00 0.00 2.92
2536 3231 5.357878 GGCTTCAACAGACCATTATTCATCA 59.642 40.000 0.00 0.00 0.00 3.07
2537 3232 6.040166 GGCTTCAACAGACCATTATTCATCAT 59.960 38.462 0.00 0.00 0.00 2.45
2538 3233 7.417116 GGCTTCAACAGACCATTATTCATCATT 60.417 37.037 0.00 0.00 0.00 2.57
2539 3234 7.977853 GCTTCAACAGACCATTATTCATCATTT 59.022 33.333 0.00 0.00 0.00 2.32
2625 3342 8.786937 ATAATTAACTATTTTGAGCATGCACG 57.213 30.769 21.98 2.07 0.00 5.34
2627 3344 6.729391 TTAACTATTTTGAGCATGCACGTA 57.271 33.333 21.98 2.87 0.00 3.57
2628 3345 5.621197 AACTATTTTGAGCATGCACGTAA 57.379 34.783 21.98 11.91 0.00 3.18
2629 3346 5.621197 ACTATTTTGAGCATGCACGTAAA 57.379 34.783 21.98 17.22 0.00 2.01
2630 3347 6.007936 ACTATTTTGAGCATGCACGTAAAA 57.992 33.333 21.98 19.12 0.00 1.52
2631 3348 6.620678 ACTATTTTGAGCATGCACGTAAAAT 58.379 32.000 21.98 23.46 33.72 1.82
2632 3349 5.766702 ATTTTGAGCATGCACGTAAAATG 57.233 34.783 21.98 0.00 0.00 2.32
2633 3350 2.917701 TGAGCATGCACGTAAAATGG 57.082 45.000 21.98 0.00 0.00 3.16
2634 3351 1.135431 TGAGCATGCACGTAAAATGGC 60.135 47.619 21.98 0.00 0.00 4.40
2635 3352 0.887247 AGCATGCACGTAAAATGGCA 59.113 45.000 21.98 0.00 41.00 4.92
2636 3353 1.271934 AGCATGCACGTAAAATGGCAA 59.728 42.857 21.98 0.00 40.02 4.52
2637 3354 1.389784 GCATGCACGTAAAATGGCAAC 59.610 47.619 14.21 0.00 40.02 4.17
2638 3355 1.648191 CATGCACGTAAAATGGCAACG 59.352 47.619 7.82 7.82 40.02 4.10
2640 3357 1.323791 GCACGTAAAATGGCAACGTC 58.676 50.000 11.77 4.67 46.04 4.34
2641 3358 1.958417 CACGTAAAATGGCAACGTCC 58.042 50.000 11.77 0.00 46.04 4.79
2642 3359 0.876399 ACGTAAAATGGCAACGTCCC 59.124 50.000 9.12 0.00 46.04 4.46
2643 3360 1.161843 CGTAAAATGGCAACGTCCCT 58.838 50.000 0.00 0.00 42.51 4.20
2644 3361 1.538075 CGTAAAATGGCAACGTCCCTT 59.462 47.619 0.00 0.00 42.51 3.95
2645 3362 2.413634 CGTAAAATGGCAACGTCCCTTC 60.414 50.000 0.00 0.00 42.51 3.46
2646 3363 1.698506 AAAATGGCAACGTCCCTTCA 58.301 45.000 0.00 0.00 42.51 3.02
2647 3364 0.958822 AAATGGCAACGTCCCTTCAC 59.041 50.000 0.00 0.00 42.51 3.18
2648 3365 0.179004 AATGGCAACGTCCCTTCACA 60.179 50.000 0.00 0.00 42.51 3.58
2649 3366 0.038166 ATGGCAACGTCCCTTCACAT 59.962 50.000 0.00 0.00 42.51 3.21
2650 3367 0.179004 TGGCAACGTCCCTTCACATT 60.179 50.000 6.74 0.00 42.51 2.71
2651 3368 1.072489 TGGCAACGTCCCTTCACATTA 59.928 47.619 6.74 0.00 42.51 1.90
2652 3369 2.290641 TGGCAACGTCCCTTCACATTAT 60.291 45.455 6.74 0.00 42.51 1.28
2700 3447 2.816087 CAAATAGGCGCTAATCATGGCT 59.184 45.455 7.64 0.00 41.76 4.75
2713 3460 6.367422 GCTAATCATGGCTACACATTACTCTC 59.633 42.308 0.00 0.00 0.00 3.20
2720 3467 5.246203 TGGCTACACATTACTCTCTGTCTTT 59.754 40.000 0.00 0.00 0.00 2.52
2721 3468 6.166982 GGCTACACATTACTCTCTGTCTTTT 58.833 40.000 0.00 0.00 0.00 2.27
2722 3469 6.311690 GGCTACACATTACTCTCTGTCTTTTC 59.688 42.308 0.00 0.00 0.00 2.29
2723 3470 6.311690 GCTACACATTACTCTCTGTCTTTTCC 59.688 42.308 0.00 0.00 0.00 3.13
2724 3471 6.426646 ACACATTACTCTCTGTCTTTTCCT 57.573 37.500 0.00 0.00 0.00 3.36
2725 3472 6.831976 ACACATTACTCTCTGTCTTTTCCTT 58.168 36.000 0.00 0.00 0.00 3.36
2726 3473 7.283329 ACACATTACTCTCTGTCTTTTCCTTT 58.717 34.615 0.00 0.00 0.00 3.11
2727 3474 7.775561 ACACATTACTCTCTGTCTTTTCCTTTT 59.224 33.333 0.00 0.00 0.00 2.27
2728 3475 8.286097 CACATTACTCTCTGTCTTTTCCTTTTC 58.714 37.037 0.00 0.00 0.00 2.29
2729 3476 7.171678 ACATTACTCTCTGTCTTTTCCTTTTCG 59.828 37.037 0.00 0.00 0.00 3.46
2730 3477 5.024785 ACTCTCTGTCTTTTCCTTTTCGT 57.975 39.130 0.00 0.00 0.00 3.85
2731 3478 4.811557 ACTCTCTGTCTTTTCCTTTTCGTG 59.188 41.667 0.00 0.00 0.00 4.35
2732 3479 4.766375 TCTCTGTCTTTTCCTTTTCGTGT 58.234 39.130 0.00 0.00 0.00 4.49
2733 3480 5.183228 TCTCTGTCTTTTCCTTTTCGTGTT 58.817 37.500 0.00 0.00 0.00 3.32
2734 3481 5.064707 TCTCTGTCTTTTCCTTTTCGTGTTG 59.935 40.000 0.00 0.00 0.00 3.33
2735 3482 4.095782 TCTGTCTTTTCCTTTTCGTGTTGG 59.904 41.667 0.00 0.00 0.00 3.77
2736 3483 3.129638 TGTCTTTTCCTTTTCGTGTTGGG 59.870 43.478 0.00 0.00 0.00 4.12
2737 3484 3.129813 GTCTTTTCCTTTTCGTGTTGGGT 59.870 43.478 0.00 0.00 0.00 4.51
2738 3485 4.336153 GTCTTTTCCTTTTCGTGTTGGGTA 59.664 41.667 0.00 0.00 0.00 3.69
2739 3486 5.009310 GTCTTTTCCTTTTCGTGTTGGGTAT 59.991 40.000 0.00 0.00 0.00 2.73
2740 3487 4.839668 TTTCCTTTTCGTGTTGGGTATG 57.160 40.909 0.00 0.00 0.00 2.39
2741 3488 2.156098 TCCTTTTCGTGTTGGGTATGC 58.844 47.619 0.00 0.00 0.00 3.14
2742 3489 2.159382 CCTTTTCGTGTTGGGTATGCT 58.841 47.619 0.00 0.00 0.00 3.79
2743 3490 2.556622 CCTTTTCGTGTTGGGTATGCTT 59.443 45.455 0.00 0.00 0.00 3.91
2744 3491 3.005367 CCTTTTCGTGTTGGGTATGCTTT 59.995 43.478 0.00 0.00 0.00 3.51
2745 3492 4.500716 CCTTTTCGTGTTGGGTATGCTTTT 60.501 41.667 0.00 0.00 0.00 2.27
2746 3493 4.657436 TTTCGTGTTGGGTATGCTTTTT 57.343 36.364 0.00 0.00 0.00 1.94
2768 3515 7.807977 TTTTCCTCTGCATATCAAATAGACC 57.192 36.000 0.00 0.00 0.00 3.85
2769 3516 6.753913 TTCCTCTGCATATCAAATAGACCT 57.246 37.500 0.00 0.00 0.00 3.85
2770 3517 6.352016 TCCTCTGCATATCAAATAGACCTC 57.648 41.667 0.00 0.00 0.00 3.85
2771 3518 6.080682 TCCTCTGCATATCAAATAGACCTCT 58.919 40.000 0.00 0.00 0.00 3.69
2772 3519 6.556495 TCCTCTGCATATCAAATAGACCTCTT 59.444 38.462 0.00 0.00 0.00 2.85
2773 3520 7.730332 TCCTCTGCATATCAAATAGACCTCTTA 59.270 37.037 0.00 0.00 0.00 2.10
2774 3521 8.538701 CCTCTGCATATCAAATAGACCTCTTAT 58.461 37.037 0.00 0.00 0.00 1.73
2775 3522 9.368674 CTCTGCATATCAAATAGACCTCTTATG 57.631 37.037 0.00 0.00 0.00 1.90
2776 3523 8.874156 TCTGCATATCAAATAGACCTCTTATGT 58.126 33.333 0.00 0.00 0.00 2.29
2777 3524 9.149225 CTGCATATCAAATAGACCTCTTATGTC 57.851 37.037 0.00 0.00 0.00 3.06
2778 3525 8.097038 TGCATATCAAATAGACCTCTTATGTCC 58.903 37.037 0.00 0.00 33.09 4.02
2779 3526 8.097038 GCATATCAAATAGACCTCTTATGTCCA 58.903 37.037 0.00 0.00 33.09 4.02
2780 3527 9.650539 CATATCAAATAGACCTCTTATGTCCAG 57.349 37.037 0.00 0.00 33.09 3.86
2781 3528 7.682787 ATCAAATAGACCTCTTATGTCCAGT 57.317 36.000 0.00 0.00 33.09 4.00
2782 3529 8.783660 ATCAAATAGACCTCTTATGTCCAGTA 57.216 34.615 0.00 0.00 33.09 2.74
2783 3530 8.783660 TCAAATAGACCTCTTATGTCCAGTAT 57.216 34.615 0.00 0.00 33.09 2.12
2784 3531 8.642432 TCAAATAGACCTCTTATGTCCAGTATG 58.358 37.037 0.00 0.00 33.09 2.39
2785 3532 8.424918 CAAATAGACCTCTTATGTCCAGTATGT 58.575 37.037 0.00 0.00 33.09 2.29
2786 3533 9.656323 AAATAGACCTCTTATGTCCAGTATGTA 57.344 33.333 0.00 0.00 33.09 2.29
2787 3534 9.656323 AATAGACCTCTTATGTCCAGTATGTAA 57.344 33.333 0.00 0.00 33.09 2.41
2788 3535 7.973048 AGACCTCTTATGTCCAGTATGTAAA 57.027 36.000 0.00 0.00 33.09 2.01
2789 3536 8.375493 AGACCTCTTATGTCCAGTATGTAAAA 57.625 34.615 0.00 0.00 33.09 1.52
2790 3537 8.993424 AGACCTCTTATGTCCAGTATGTAAAAT 58.007 33.333 0.00 0.00 33.09 1.82
2791 3538 8.964476 ACCTCTTATGTCCAGTATGTAAAATG 57.036 34.615 0.00 0.00 0.00 2.32
2792 3539 8.548877 ACCTCTTATGTCCAGTATGTAAAATGT 58.451 33.333 0.00 0.00 0.00 2.71
2793 3540 8.830580 CCTCTTATGTCCAGTATGTAAAATGTG 58.169 37.037 0.00 0.00 0.00 3.21
2794 3541 9.599866 CTCTTATGTCCAGTATGTAAAATGTGA 57.400 33.333 0.00 0.00 0.00 3.58
2795 3542 9.952030 TCTTATGTCCAGTATGTAAAATGTGAA 57.048 29.630 0.00 0.00 0.00 3.18
2797 3544 9.733556 TTATGTCCAGTATGTAAAATGTGAAGT 57.266 29.630 0.00 0.00 0.00 3.01
2798 3545 8.635765 ATGTCCAGTATGTAAAATGTGAAGTT 57.364 30.769 0.00 0.00 0.00 2.66
2799 3546 7.870826 TGTCCAGTATGTAAAATGTGAAGTTG 58.129 34.615 0.00 0.00 0.00 3.16
2800 3547 7.717436 TGTCCAGTATGTAAAATGTGAAGTTGA 59.283 33.333 0.00 0.00 0.00 3.18
2801 3548 8.730680 GTCCAGTATGTAAAATGTGAAGTTGAT 58.269 33.333 0.00 0.00 0.00 2.57
2802 3549 9.295825 TCCAGTATGTAAAATGTGAAGTTGATT 57.704 29.630 0.00 0.00 0.00 2.57
2803 3550 9.559958 CCAGTATGTAAAATGTGAAGTTGATTC 57.440 33.333 0.00 0.00 38.50 2.52
3063 3810 7.255451 GGAACTGAATATGTGTCCAACTTTTGA 60.255 37.037 0.00 0.00 0.00 2.69
3090 3837 3.637273 GACCCTGTCCCTTGGCGT 61.637 66.667 0.00 0.00 0.00 5.68
4039 4941 0.685097 TAGGCTCAACCGCTCAAGTT 59.315 50.000 0.00 0.00 46.52 2.66
4112 5023 1.080434 GACTGGTGCGTCTCAGGAC 60.080 63.158 0.00 0.00 38.97 3.85
4198 5109 2.477863 GCCGTGCAAATCCAGATGTTAC 60.478 50.000 0.00 0.00 0.00 2.50
4227 5153 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
4287 5242 9.757859 TTTTGACACTAGTGTAGTTTAAAAACG 57.242 29.630 27.98 0.00 45.05 3.60
4288 5243 8.477984 TTGACACTAGTGTAGTTTAAAAACGT 57.522 30.769 27.98 0.21 45.05 3.99
4289 5244 8.477984 TGACACTAGTGTAGTTTAAAAACGTT 57.522 30.769 27.98 0.00 45.05 3.99
4290 5245 8.594687 TGACACTAGTGTAGTTTAAAAACGTTC 58.405 33.333 27.98 10.38 45.05 3.95
4291 5246 8.707938 ACACTAGTGTAGTTTAAAAACGTTCT 57.292 30.769 26.91 0.00 42.90 3.01
4292 5247 9.154847 ACACTAGTGTAGTTTAAAAACGTTCTT 57.845 29.630 26.91 0.00 42.90 2.52
4419 5419 0.524816 CAGCATCAACCGAATGCAGC 60.525 55.000 10.38 0.00 43.25 5.25
4456 5456 4.675114 GCAAGTAAAATCGACCAACACTTG 59.325 41.667 17.66 17.66 42.56 3.16
4470 5499 5.545063 CAACACTTGGGAAATAAACCCTT 57.455 39.130 0.00 0.00 46.82 3.95
4501 5530 5.714806 TCTCCAACAGCGGTGATATATATCA 59.285 40.000 23.44 19.44 40.19 2.15
4619 5648 0.960861 CCTTTCTTCTTCCCCGCCAC 60.961 60.000 0.00 0.00 0.00 5.01
4633 5662 2.231380 GCCACCCCCTTCTTCCTCA 61.231 63.158 0.00 0.00 0.00 3.86
4647 5676 2.434843 CCTCACATCTAGCGCCCCA 61.435 63.158 2.29 0.00 0.00 4.96
4648 5677 1.750930 CTCACATCTAGCGCCCCAT 59.249 57.895 2.29 0.00 0.00 4.00
4652 5681 1.302033 CATCTAGCGCCCCATCACC 60.302 63.158 2.29 0.00 0.00 4.02
4757 5786 1.675714 CCAGCATGCTTTACGTGGAGA 60.676 52.381 19.98 0.00 35.67 3.71
4759 5788 2.286294 CAGCATGCTTTACGTGGAGATC 59.714 50.000 19.98 0.00 35.67 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.074072 AACGCTACACAATGCCCCA 59.926 52.632 0.00 0.00 0.00 4.96
1 2 1.241315 ACAACGCTACACAATGCCCC 61.241 55.000 0.00 0.00 0.00 5.80
3 4 2.073816 AGTACAACGCTACACAATGCC 58.926 47.619 0.00 0.00 0.00 4.40
5 6 2.344441 CCGAGTACAACGCTACACAATG 59.656 50.000 0.00 0.00 0.00 2.82
6 7 2.029649 ACCGAGTACAACGCTACACAAT 60.030 45.455 0.00 0.00 0.00 2.71
7 8 1.337703 ACCGAGTACAACGCTACACAA 59.662 47.619 0.00 0.00 0.00 3.33
8 9 0.953727 ACCGAGTACAACGCTACACA 59.046 50.000 0.00 0.00 0.00 3.72
9 10 2.056094 AACCGAGTACAACGCTACAC 57.944 50.000 0.00 0.00 0.00 2.90
10 11 2.798976 AAACCGAGTACAACGCTACA 57.201 45.000 0.00 0.00 0.00 2.74
11 12 2.409715 GGAAAACCGAGTACAACGCTAC 59.590 50.000 0.00 0.00 0.00 3.58
12 13 2.610232 GGGAAAACCGAGTACAACGCTA 60.610 50.000 0.00 0.00 0.00 4.26
13 14 1.505425 GGAAAACCGAGTACAACGCT 58.495 50.000 0.00 0.00 0.00 5.07
14 15 0.514255 GGGAAAACCGAGTACAACGC 59.486 55.000 0.00 0.00 0.00 4.84
15 16 1.868469 TGGGAAAACCGAGTACAACG 58.132 50.000 0.00 0.19 44.64 4.10
16 17 3.610821 GCATTGGGAAAACCGAGTACAAC 60.611 47.826 0.00 0.00 44.64 3.32
17 18 2.554893 GCATTGGGAAAACCGAGTACAA 59.445 45.455 0.00 0.00 44.64 2.41
18 19 2.156098 GCATTGGGAAAACCGAGTACA 58.844 47.619 0.00 0.00 44.64 2.90
19 20 2.433436 AGCATTGGGAAAACCGAGTAC 58.567 47.619 0.00 0.00 44.64 2.73
20 21 2.871096 AGCATTGGGAAAACCGAGTA 57.129 45.000 0.00 0.00 44.64 2.59
21 22 1.995376 AAGCATTGGGAAAACCGAGT 58.005 45.000 0.00 0.00 44.64 4.18
22 23 2.558359 AGAAAGCATTGGGAAAACCGAG 59.442 45.455 0.00 0.00 44.64 4.63
23 24 2.593026 AGAAAGCATTGGGAAAACCGA 58.407 42.857 0.00 0.00 44.64 4.69
24 25 3.385193 AAGAAAGCATTGGGAAAACCG 57.615 42.857 0.00 0.00 44.64 4.44
25 26 3.740832 CGAAAGAAAGCATTGGGAAAACC 59.259 43.478 0.00 0.00 40.81 3.27
26 27 3.740832 CCGAAAGAAAGCATTGGGAAAAC 59.259 43.478 0.00 0.00 0.00 2.43
27 28 3.386402 ACCGAAAGAAAGCATTGGGAAAA 59.614 39.130 0.00 0.00 0.00 2.29
28 29 2.962421 ACCGAAAGAAAGCATTGGGAAA 59.038 40.909 0.00 0.00 0.00 3.13
29 30 2.593026 ACCGAAAGAAAGCATTGGGAA 58.407 42.857 0.00 0.00 0.00 3.97
30 31 2.286365 ACCGAAAGAAAGCATTGGGA 57.714 45.000 0.00 0.00 0.00 4.37
31 32 2.159379 GCTACCGAAAGAAAGCATTGGG 60.159 50.000 0.00 0.00 38.18 4.12
32 33 2.476185 CGCTACCGAAAGAAAGCATTGG 60.476 50.000 0.00 0.00 38.18 3.16
33 34 2.159627 ACGCTACCGAAAGAAAGCATTG 59.840 45.455 0.00 0.00 38.18 2.82
34 35 2.423577 ACGCTACCGAAAGAAAGCATT 58.576 42.857 0.00 0.00 38.18 3.56
35 36 2.094762 ACGCTACCGAAAGAAAGCAT 57.905 45.000 0.00 0.00 38.18 3.79
36 37 2.029649 ACTACGCTACCGAAAGAAAGCA 60.030 45.455 0.00 0.00 38.18 3.91
37 38 2.597748 GACTACGCTACCGAAAGAAAGC 59.402 50.000 0.00 0.00 38.29 3.51
38 39 2.844804 CGACTACGCTACCGAAAGAAAG 59.155 50.000 0.00 0.00 38.29 2.62
39 40 2.226437 ACGACTACGCTACCGAAAGAAA 59.774 45.455 0.00 0.00 43.96 2.52
40 41 1.806542 ACGACTACGCTACCGAAAGAA 59.193 47.619 0.00 0.00 43.96 2.52
41 42 1.129251 CACGACTACGCTACCGAAAGA 59.871 52.381 0.00 0.00 43.96 2.52
42 43 1.135859 ACACGACTACGCTACCGAAAG 60.136 52.381 0.00 0.00 43.96 2.62
43 44 0.874390 ACACGACTACGCTACCGAAA 59.126 50.000 0.00 0.00 43.96 3.46
44 45 0.874390 AACACGACTACGCTACCGAA 59.126 50.000 0.00 0.00 43.96 4.30
45 46 0.443869 GAACACGACTACGCTACCGA 59.556 55.000 0.00 0.00 43.96 4.69
46 47 0.445436 AGAACACGACTACGCTACCG 59.555 55.000 0.00 0.00 43.96 4.02
47 48 1.892468 CAGAACACGACTACGCTACC 58.108 55.000 0.00 0.00 43.96 3.18
48 49 1.257539 GCAGAACACGACTACGCTAC 58.742 55.000 0.00 0.00 43.96 3.58
49 50 0.876399 TGCAGAACACGACTACGCTA 59.124 50.000 0.00 0.00 43.96 4.26
50 51 0.243907 ATGCAGAACACGACTACGCT 59.756 50.000 0.00 0.00 43.96 5.07
51 52 0.366871 CATGCAGAACACGACTACGC 59.633 55.000 0.00 0.00 43.96 4.42
52 53 1.977188 TCATGCAGAACACGACTACG 58.023 50.000 0.00 0.00 45.75 3.51
53 54 5.340803 TCTAATCATGCAGAACACGACTAC 58.659 41.667 0.00 0.00 0.00 2.73
54 55 5.576447 TCTAATCATGCAGAACACGACTA 57.424 39.130 0.00 0.00 0.00 2.59
55 56 4.456280 TCTAATCATGCAGAACACGACT 57.544 40.909 0.00 0.00 0.00 4.18
56 57 5.725110 AATCTAATCATGCAGAACACGAC 57.275 39.130 0.00 0.00 0.00 4.34
57 58 7.436933 AGATAATCTAATCATGCAGAACACGA 58.563 34.615 0.00 0.00 0.00 4.35
58 59 7.649370 AGATAATCTAATCATGCAGAACACG 57.351 36.000 0.00 0.00 0.00 4.49
59 60 8.288208 CCAAGATAATCTAATCATGCAGAACAC 58.712 37.037 0.00 0.00 0.00 3.32
60 61 7.446319 CCCAAGATAATCTAATCATGCAGAACA 59.554 37.037 0.00 0.00 0.00 3.18
61 62 7.663081 TCCCAAGATAATCTAATCATGCAGAAC 59.337 37.037 0.00 0.00 0.00 3.01
62 63 7.748677 TCCCAAGATAATCTAATCATGCAGAA 58.251 34.615 0.00 0.00 0.00 3.02
63 64 7.320384 TCCCAAGATAATCTAATCATGCAGA 57.680 36.000 0.00 0.00 0.00 4.26
64 65 7.011202 CGATCCCAAGATAATCTAATCATGCAG 59.989 40.741 0.00 0.00 30.90 4.41
65 66 6.820152 CGATCCCAAGATAATCTAATCATGCA 59.180 38.462 0.00 0.00 30.90 3.96
66 67 7.010923 GTCGATCCCAAGATAATCTAATCATGC 59.989 40.741 0.00 0.00 30.90 4.06
67 68 8.037166 TGTCGATCCCAAGATAATCTAATCATG 58.963 37.037 0.00 0.00 30.90 3.07
68 69 8.138928 TGTCGATCCCAAGATAATCTAATCAT 57.861 34.615 0.00 0.00 30.90 2.45
69 70 7.539034 TGTCGATCCCAAGATAATCTAATCA 57.461 36.000 0.00 0.00 30.90 2.57
70 71 8.877779 CAATGTCGATCCCAAGATAATCTAATC 58.122 37.037 0.00 0.00 30.90 1.75
71 72 8.378565 ACAATGTCGATCCCAAGATAATCTAAT 58.621 33.333 0.00 0.00 30.90 1.73
72 73 7.735917 ACAATGTCGATCCCAAGATAATCTAA 58.264 34.615 0.00 0.00 30.90 2.10
73 74 7.303182 ACAATGTCGATCCCAAGATAATCTA 57.697 36.000 0.00 0.00 30.90 1.98
74 75 6.179906 ACAATGTCGATCCCAAGATAATCT 57.820 37.500 0.00 0.00 30.90 2.40
75 76 7.819415 TCATACAATGTCGATCCCAAGATAATC 59.181 37.037 0.00 0.00 30.90 1.75
76 77 7.679783 TCATACAATGTCGATCCCAAGATAAT 58.320 34.615 0.00 0.00 30.90 1.28
77 78 7.015195 TCTCATACAATGTCGATCCCAAGATAA 59.985 37.037 0.00 0.00 30.90 1.75
78 79 6.493458 TCTCATACAATGTCGATCCCAAGATA 59.507 38.462 0.00 0.00 30.90 1.98
79 80 5.305386 TCTCATACAATGTCGATCCCAAGAT 59.695 40.000 0.00 0.00 34.57 2.40
80 81 4.649218 TCTCATACAATGTCGATCCCAAGA 59.351 41.667 0.00 0.00 0.00 3.02
81 82 4.948847 TCTCATACAATGTCGATCCCAAG 58.051 43.478 0.00 0.00 0.00 3.61
82 83 4.740634 GCTCTCATACAATGTCGATCCCAA 60.741 45.833 0.00 0.00 0.00 4.12
83 84 3.243873 GCTCTCATACAATGTCGATCCCA 60.244 47.826 0.00 0.00 0.00 4.37
84 85 3.006323 AGCTCTCATACAATGTCGATCCC 59.994 47.826 0.00 0.00 0.00 3.85
85 86 4.250116 AGCTCTCATACAATGTCGATCC 57.750 45.455 0.00 0.00 0.00 3.36
86 87 5.048364 AGGTAGCTCTCATACAATGTCGATC 60.048 44.000 0.00 0.00 0.00 3.69
87 88 4.830046 AGGTAGCTCTCATACAATGTCGAT 59.170 41.667 0.00 0.00 0.00 3.59
88 89 4.207955 AGGTAGCTCTCATACAATGTCGA 58.792 43.478 0.00 0.00 0.00 4.20
89 90 4.036852 TGAGGTAGCTCTCATACAATGTCG 59.963 45.833 21.80 0.00 38.70 4.35
90 91 5.285651 GTGAGGTAGCTCTCATACAATGTC 58.714 45.833 21.80 0.00 44.43 3.06
91 92 4.100189 GGTGAGGTAGCTCTCATACAATGT 59.900 45.833 21.80 0.00 44.43 2.71
92 93 4.100035 TGGTGAGGTAGCTCTCATACAATG 59.900 45.833 21.80 0.00 44.43 2.82
93 94 4.290093 TGGTGAGGTAGCTCTCATACAAT 58.710 43.478 21.80 0.00 44.43 2.71
94 95 3.708451 TGGTGAGGTAGCTCTCATACAA 58.292 45.455 21.80 3.48 44.43 2.41
95 96 3.382083 TGGTGAGGTAGCTCTCATACA 57.618 47.619 21.80 9.75 44.43 2.29
96 97 3.057876 CGATGGTGAGGTAGCTCTCATAC 60.058 52.174 21.80 11.76 44.43 2.39
97 98 3.149981 CGATGGTGAGGTAGCTCTCATA 58.850 50.000 21.80 11.85 44.43 2.15
98 99 1.959985 CGATGGTGAGGTAGCTCTCAT 59.040 52.381 21.80 21.97 44.43 2.90
99 100 1.341089 ACGATGGTGAGGTAGCTCTCA 60.341 52.381 21.80 18.82 41.03 3.27
100 101 1.394618 ACGATGGTGAGGTAGCTCTC 58.605 55.000 21.80 17.88 0.00 3.20
101 102 3.598273 ACGATGGTGAGGTAGCTCT 57.402 52.632 21.80 2.24 0.00 4.09
112 113 1.202222 GGTCGAACGATACACGATGGT 60.202 52.381 0.00 0.00 45.77 3.55
113 114 1.474017 GGTCGAACGATACACGATGG 58.526 55.000 0.00 0.00 45.77 3.51
114 115 1.110085 CGGTCGAACGATACACGATG 58.890 55.000 20.37 0.00 45.77 3.84
115 116 0.729116 ACGGTCGAACGATACACGAT 59.271 50.000 32.41 0.00 45.77 3.73
116 117 0.179217 CACGGTCGAACGATACACGA 60.179 55.000 32.41 0.00 45.77 4.35
118 119 2.159653 AGTACACGGTCGAACGATACAC 60.160 50.000 32.41 19.82 37.61 2.90
119 120 2.076100 AGTACACGGTCGAACGATACA 58.924 47.619 32.41 8.54 37.61 2.29
120 121 2.813779 AGTACACGGTCGAACGATAC 57.186 50.000 32.41 27.56 37.61 2.24
121 122 2.159531 CCAAGTACACGGTCGAACGATA 60.160 50.000 32.41 18.24 37.61 2.92
122 123 1.401931 CCAAGTACACGGTCGAACGAT 60.402 52.381 32.41 19.36 37.61 3.73
123 124 0.040157 CCAAGTACACGGTCGAACGA 60.040 55.000 32.41 3.66 37.61 3.85
124 125 0.318107 ACCAAGTACACGGTCGAACG 60.318 55.000 23.55 23.55 40.31 3.95
125 126 1.856802 AACCAAGTACACGGTCGAAC 58.143 50.000 6.68 0.00 33.17 3.95
126 127 2.203401 CAAACCAAGTACACGGTCGAA 58.797 47.619 6.68 0.00 33.17 3.71
127 128 1.538634 CCAAACCAAGTACACGGTCGA 60.539 52.381 6.68 0.00 33.17 4.20
128 129 0.863144 CCAAACCAAGTACACGGTCG 59.137 55.000 6.68 2.41 33.17 4.79
129 130 1.232119 CCCAAACCAAGTACACGGTC 58.768 55.000 6.68 0.00 33.17 4.79
130 131 0.179012 CCCCAAACCAAGTACACGGT 60.179 55.000 0.00 0.00 36.98 4.83
131 132 0.108963 TCCCCAAACCAAGTACACGG 59.891 55.000 0.00 0.00 0.00 4.94
132 133 2.194201 ATCCCCAAACCAAGTACACG 57.806 50.000 0.00 0.00 0.00 4.49
133 134 2.029380 GCAATCCCCAAACCAAGTACAC 60.029 50.000 0.00 0.00 0.00 2.90
134 135 2.158385 AGCAATCCCCAAACCAAGTACA 60.158 45.455 0.00 0.00 0.00 2.90
135 136 2.525368 AGCAATCCCCAAACCAAGTAC 58.475 47.619 0.00 0.00 0.00 2.73
136 137 2.990740 AGCAATCCCCAAACCAAGTA 57.009 45.000 0.00 0.00 0.00 2.24
137 138 2.101640 AAGCAATCCCCAAACCAAGT 57.898 45.000 0.00 0.00 0.00 3.16
138 139 7.781324 ATATATAAGCAATCCCCAAACCAAG 57.219 36.000 0.00 0.00 0.00 3.61
139 140 9.661954 TTTATATATAAGCAATCCCCAAACCAA 57.338 29.630 5.36 0.00 0.00 3.67
140 141 9.308000 CTTTATATATAAGCAATCCCCAAACCA 57.692 33.333 5.36 0.00 0.00 3.67
141 142 8.251026 GCTTTATATATAAGCAATCCCCAAACC 58.749 37.037 17.50 0.00 45.64 3.27
142 143 7.968405 CGCTTTATATATAAGCAATCCCCAAAC 59.032 37.037 20.10 0.00 46.44 2.93
143 144 7.122055 CCGCTTTATATATAAGCAATCCCCAAA 59.878 37.037 20.10 0.70 46.44 3.28
144 145 6.601613 CCGCTTTATATATAAGCAATCCCCAA 59.398 38.462 20.10 0.00 46.44 4.12
145 146 6.119536 CCGCTTTATATATAAGCAATCCCCA 58.880 40.000 20.10 0.25 46.44 4.96
146 147 5.531287 CCCGCTTTATATATAAGCAATCCCC 59.469 44.000 20.10 2.02 46.44 4.81
147 148 5.531287 CCCCGCTTTATATATAAGCAATCCC 59.469 44.000 20.10 2.72 46.44 3.85
148 149 5.008712 GCCCCGCTTTATATATAAGCAATCC 59.991 44.000 20.10 9.09 46.44 3.01
149 150 5.277345 CGCCCCGCTTTATATATAAGCAATC 60.277 44.000 20.10 10.76 46.44 2.67
150 151 4.574828 CGCCCCGCTTTATATATAAGCAAT 59.425 41.667 20.10 0.00 46.44 3.56
151 152 3.936453 CGCCCCGCTTTATATATAAGCAA 59.064 43.478 20.10 2.92 46.44 3.91
152 153 3.196039 TCGCCCCGCTTTATATATAAGCA 59.804 43.478 20.10 3.45 46.44 3.91
153 154 3.788937 TCGCCCCGCTTTATATATAAGC 58.211 45.455 14.57 14.57 43.49 3.09
154 155 5.220605 GCTTTCGCCCCGCTTTATATATAAG 60.221 44.000 5.36 2.45 0.00 1.73
155 156 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
156 157 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
157 158 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
158 159 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
159 160 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
160 161 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
161 162 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
173 174 3.710326 AAAACCTCGAAACAGGCTTTC 57.290 42.857 0.00 0.00 36.98 2.62
174 175 4.022329 CCATAAAACCTCGAAACAGGCTTT 60.022 41.667 0.00 0.00 36.98 3.51
175 176 3.506067 CCATAAAACCTCGAAACAGGCTT 59.494 43.478 0.00 0.00 36.98 4.35
176 177 3.081804 CCATAAAACCTCGAAACAGGCT 58.918 45.455 0.00 0.00 36.98 4.58
177 178 2.415491 GCCATAAAACCTCGAAACAGGC 60.415 50.000 0.00 0.00 36.98 4.85
178 179 2.163613 GGCCATAAAACCTCGAAACAGG 59.836 50.000 0.00 0.00 39.80 4.00
179 180 3.081804 AGGCCATAAAACCTCGAAACAG 58.918 45.455 5.01 0.00 0.00 3.16
180 181 2.817258 CAGGCCATAAAACCTCGAAACA 59.183 45.455 5.01 0.00 32.56 2.83
181 182 2.817844 ACAGGCCATAAAACCTCGAAAC 59.182 45.455 5.01 0.00 32.56 2.78
182 183 2.817258 CACAGGCCATAAAACCTCGAAA 59.183 45.455 5.01 0.00 32.56 3.46
183 184 2.432444 CACAGGCCATAAAACCTCGAA 58.568 47.619 5.01 0.00 32.56 3.71
184 185 1.948611 GCACAGGCCATAAAACCTCGA 60.949 52.381 5.01 0.00 32.56 4.04
185 186 0.451783 GCACAGGCCATAAAACCTCG 59.548 55.000 5.01 0.00 32.56 4.63
186 187 1.474077 CAGCACAGGCCATAAAACCTC 59.526 52.381 5.01 0.00 42.56 3.85
187 188 1.549203 CAGCACAGGCCATAAAACCT 58.451 50.000 5.01 0.00 42.56 3.50
201 202 4.101448 ATCCCCGTCTGCCAGCAC 62.101 66.667 0.00 0.00 0.00 4.40
212 213 1.065418 AGGTTTGCTCTTACATCCCCG 60.065 52.381 0.00 0.00 0.00 5.73
215 216 6.097129 ACTCTACTAGGTTTGCTCTTACATCC 59.903 42.308 0.00 0.00 0.00 3.51
219 220 6.324042 GTGACTCTACTAGGTTTGCTCTTAC 58.676 44.000 0.00 0.00 0.00 2.34
231 232 6.149129 TGCACAATATGGTGACTCTACTAG 57.851 41.667 14.78 0.00 41.32 2.57
242 243 2.575532 CCTTCCGATGCACAATATGGT 58.424 47.619 0.00 0.00 0.00 3.55
246 247 0.254462 TGGCCTTCCGATGCACAATA 59.746 50.000 3.32 0.00 34.14 1.90
248 249 1.228398 TTGGCCTTCCGATGCACAA 60.228 52.632 3.32 0.00 34.14 3.33
250 251 2.877691 GTTGGCCTTCCGATGCAC 59.122 61.111 3.32 0.00 34.14 4.57
257 258 3.423154 CGCTCACGTTGGCCTTCC 61.423 66.667 3.32 0.00 33.53 3.46
303 306 6.149474 CCCTCGAGTATTTTTGACTCAATGTT 59.851 38.462 12.31 0.00 42.97 2.71
343 346 0.100861 GAATCAGTCGTCGGAGGGAC 59.899 60.000 0.00 0.00 42.48 4.46
344 347 0.323087 TGAATCAGTCGTCGGAGGGA 60.323 55.000 0.00 0.00 0.00 4.20
347 350 1.202582 AGGTTGAATCAGTCGTCGGAG 59.797 52.381 0.00 0.00 0.00 4.63
375 378 2.981909 TTGACCGAGGACGACGCT 60.982 61.111 0.00 0.00 42.66 5.07
388 391 2.609737 CGTGGGACTACTTGGAGTTGAC 60.610 54.545 0.00 0.00 0.00 3.18
391 394 0.320697 GCGTGGGACTACTTGGAGTT 59.679 55.000 0.00 0.00 0.00 3.01
396 399 0.608640 AGAAGGCGTGGGACTACTTG 59.391 55.000 0.00 0.00 0.00 3.16
409 412 3.368948 CCAAGAGAGTACTGGAAGAAGGC 60.369 52.174 0.00 0.00 37.43 4.35
416 419 1.890894 GCGCCAAGAGAGTACTGGA 59.109 57.895 0.00 0.00 0.00 3.86
421 424 4.143333 GCCCGCGCCAAGAGAGTA 62.143 66.667 0.00 0.00 0.00 2.59
442 445 2.890814 CATCCTCCCGGTAAGACCTAT 58.109 52.381 0.00 0.00 35.66 2.57
473 477 2.350522 GCACTCAACTCCGATCATGTT 58.649 47.619 0.00 0.00 0.00 2.71
479 483 2.125512 GCCGCACTCAACTCCGAT 60.126 61.111 0.00 0.00 0.00 4.18
502 509 1.751924 CCTCTCAACCCTCCTTAGTCG 59.248 57.143 0.00 0.00 0.00 4.18
546 555 3.083349 CTCACCTCATCCGCCCCA 61.083 66.667 0.00 0.00 0.00 4.96
556 565 2.214181 ATCGCGGACACACTCACCTC 62.214 60.000 6.13 0.00 0.00 3.85
580 589 1.210478 CATTCAATCTCTGTCCCCCGT 59.790 52.381 0.00 0.00 0.00 5.28
593 609 2.019249 CGGATCAGCACCACATTCAAT 58.981 47.619 0.00 0.00 0.00 2.57
632 649 8.124199 ACGTTTTTCTTTTCAAATAGCTTCGTA 58.876 29.630 0.00 0.00 0.00 3.43
633 650 6.970613 ACGTTTTTCTTTTCAAATAGCTTCGT 59.029 30.769 0.00 0.00 0.00 3.85
634 651 7.376530 ACGTTTTTCTTTTCAAATAGCTTCG 57.623 32.000 0.00 0.00 0.00 3.79
635 652 8.407458 CGTACGTTTTTCTTTTCAAATAGCTTC 58.593 33.333 7.22 0.00 0.00 3.86
636 653 8.124199 TCGTACGTTTTTCTTTTCAAATAGCTT 58.876 29.630 16.05 0.00 0.00 3.74
637 654 7.632721 TCGTACGTTTTTCTTTTCAAATAGCT 58.367 30.769 16.05 0.00 0.00 3.32
638 655 7.825627 TCGTACGTTTTTCTTTTCAAATAGC 57.174 32.000 16.05 0.00 0.00 2.97
639 656 8.407458 GCTTCGTACGTTTTTCTTTTCAAATAG 58.593 33.333 16.05 0.00 0.00 1.73
640 657 8.124199 AGCTTCGTACGTTTTTCTTTTCAAATA 58.876 29.630 16.05 0.00 0.00 1.40
641 658 6.970613 AGCTTCGTACGTTTTTCTTTTCAAAT 59.029 30.769 16.05 0.00 0.00 2.32
642 659 6.249682 CAGCTTCGTACGTTTTTCTTTTCAAA 59.750 34.615 16.05 0.00 0.00 2.69
643 660 5.735427 CAGCTTCGTACGTTTTTCTTTTCAA 59.265 36.000 16.05 0.00 0.00 2.69
644 661 5.163834 ACAGCTTCGTACGTTTTTCTTTTCA 60.164 36.000 16.05 0.00 0.00 2.69
645 662 5.260900 ACAGCTTCGTACGTTTTTCTTTTC 58.739 37.500 16.05 0.00 0.00 2.29
646 663 5.225899 ACAGCTTCGTACGTTTTTCTTTT 57.774 34.783 16.05 0.00 0.00 2.27
647 664 4.260497 GGACAGCTTCGTACGTTTTTCTTT 60.260 41.667 16.05 0.25 0.00 2.52
648 665 3.246936 GGACAGCTTCGTACGTTTTTCTT 59.753 43.478 16.05 0.00 0.00 2.52
649 666 2.798847 GGACAGCTTCGTACGTTTTTCT 59.201 45.455 16.05 4.04 0.00 2.52
650 667 2.798847 AGGACAGCTTCGTACGTTTTTC 59.201 45.455 16.05 5.61 0.00 2.29
651 668 2.830104 AGGACAGCTTCGTACGTTTTT 58.170 42.857 16.05 0.00 0.00 1.94
652 669 2.521105 AGGACAGCTTCGTACGTTTT 57.479 45.000 16.05 0.00 0.00 2.43
653 670 2.521105 AAGGACAGCTTCGTACGTTT 57.479 45.000 16.05 0.00 0.00 3.60
654 671 2.666619 CGTAAGGACAGCTTCGTACGTT 60.667 50.000 16.05 1.10 35.60 3.99
655 672 1.135859 CGTAAGGACAGCTTCGTACGT 60.136 52.381 16.05 0.00 35.60 3.57
656 673 1.135859 ACGTAAGGACAGCTTCGTACG 60.136 52.381 9.53 9.53 41.39 3.67
657 674 2.513893 GACGTAAGGACAGCTTCGTAC 58.486 52.381 0.00 0.00 46.39 3.67
658 675 1.129251 CGACGTAAGGACAGCTTCGTA 59.871 52.381 0.00 0.00 46.39 3.43
659 676 0.109873 CGACGTAAGGACAGCTTCGT 60.110 55.000 0.00 0.00 46.39 3.85
660 677 0.167470 TCGACGTAAGGACAGCTTCG 59.833 55.000 0.00 0.00 46.39 3.79
661 678 1.897641 CTCGACGTAAGGACAGCTTC 58.102 55.000 0.00 0.00 46.39 3.86
678 695 2.032722 CAGTGTATACCGAGAGACGCTC 60.033 54.545 0.00 0.00 41.07 5.03
722 740 5.676532 AATTTGTGGCATTGTCAACATTG 57.323 34.783 0.00 1.60 0.00 2.82
789 851 2.419713 GGATGGGGTAAACTCGGTCTTC 60.420 54.545 0.00 0.00 0.00 2.87
790 852 1.558294 GGATGGGGTAAACTCGGTCTT 59.442 52.381 0.00 0.00 0.00 3.01
791 853 1.201424 GGATGGGGTAAACTCGGTCT 58.799 55.000 0.00 0.00 0.00 3.85
793 855 0.548197 TGGGATGGGGTAAACTCGGT 60.548 55.000 0.00 0.00 0.00 4.69
794 856 0.107361 GTGGGATGGGGTAAACTCGG 60.107 60.000 0.00 0.00 0.00 4.63
795 857 0.909623 AGTGGGATGGGGTAAACTCG 59.090 55.000 0.00 0.00 0.00 4.18
804 866 1.005805 TGAATTGTGGAGTGGGATGGG 59.994 52.381 0.00 0.00 0.00 4.00
842 904 0.237498 CCGCTTTCTCGGTTTTCCAC 59.763 55.000 0.00 0.00 44.18 4.02
843 905 2.624169 CCGCTTTCTCGGTTTTCCA 58.376 52.632 0.00 0.00 44.18 3.53
897 959 4.325030 GGGATGGAATGGAACTTACCAAGA 60.325 45.833 0.00 0.00 43.47 3.02
899 961 3.596046 AGGGATGGAATGGAACTTACCAA 59.404 43.478 0.00 0.00 43.47 3.67
902 964 4.079730 AGGAAGGGATGGAATGGAACTTAC 60.080 45.833 0.00 0.00 0.00 2.34
904 966 2.929043 AGGAAGGGATGGAATGGAACTT 59.071 45.455 0.00 0.00 0.00 2.66
905 967 2.511637 GAGGAAGGGATGGAATGGAACT 59.488 50.000 0.00 0.00 0.00 3.01
906 968 2.423517 GGAGGAAGGGATGGAATGGAAC 60.424 54.545 0.00 0.00 0.00 3.62
928 990 4.248859 CTCGTGGAGATTTTGTGATCTGT 58.751 43.478 0.00 0.00 36.54 3.41
930 992 3.866651 CCTCGTGGAGATTTTGTGATCT 58.133 45.455 0.00 0.00 39.04 2.75
931 993 2.352960 GCCTCGTGGAGATTTTGTGATC 59.647 50.000 7.92 0.00 34.57 2.92
932 994 2.359900 GCCTCGTGGAGATTTTGTGAT 58.640 47.619 7.92 0.00 34.57 3.06
935 997 0.673644 CGGCCTCGTGGAGATTTTGT 60.674 55.000 7.92 0.00 34.57 2.83
936 998 1.982073 GCGGCCTCGTGGAGATTTTG 61.982 60.000 7.92 0.00 38.89 2.44
937 999 1.745489 GCGGCCTCGTGGAGATTTT 60.745 57.895 7.92 0.00 38.89 1.82
939 1001 4.514577 CGCGGCCTCGTGGAGATT 62.515 66.667 7.05 0.00 42.54 2.40
954 1016 2.357760 TTTAGGGTCACACGGCGC 60.358 61.111 6.90 0.00 0.00 6.53
956 1018 0.953960 CAGGTTTAGGGTCACACGGC 60.954 60.000 0.00 0.00 0.00 5.68
1654 1896 1.986575 GCAATGGAGAAGGCGCAGTC 61.987 60.000 10.83 5.45 0.00 3.51
2042 2287 6.845302 TCATTTGCAATCTCACTGTATTCAC 58.155 36.000 0.00 0.00 0.00 3.18
2088 2333 1.039856 TTTCACTGGAAAGCTTGGCC 58.960 50.000 0.00 5.62 38.07 5.36
2089 2334 2.888834 TTTTCACTGGAAAGCTTGGC 57.111 45.000 0.00 0.00 43.47 4.52
2090 2335 3.070015 ACCATTTTCACTGGAAAGCTTGG 59.930 43.478 0.00 0.00 43.47 3.61
2091 2336 4.326504 ACCATTTTCACTGGAAAGCTTG 57.673 40.909 0.00 0.00 43.47 4.01
2104 2352 7.175990 TCTGTTTCCACCATAGTTACCATTTTC 59.824 37.037 0.00 0.00 0.00 2.29
2107 2355 6.012858 TCTCTGTTTCCACCATAGTTACCATT 60.013 38.462 0.00 0.00 0.00 3.16
2174 2422 4.888917 AGTTCTAGCACTTGAAAGAGACC 58.111 43.478 0.00 0.00 0.00 3.85
2236 2490 7.049799 AGATAGAGAGATCAGTAAAAGGTGC 57.950 40.000 0.00 0.00 0.00 5.01
2282 2548 8.141268 GGCTGCTAAAAACAATTATGGCTATAA 58.859 33.333 4.86 4.86 33.54 0.98
2302 2568 3.080319 GTGAAGATCAGAAAAGGCTGCT 58.920 45.455 0.00 0.00 35.86 4.24
2303 2569 2.816087 TGTGAAGATCAGAAAAGGCTGC 59.184 45.455 0.00 0.00 35.86 5.25
2318 2593 7.115378 GGAGCAACATAAATGTCTTTTGTGAAG 59.885 37.037 12.85 7.19 40.80 3.02
2321 2596 5.634859 GGGAGCAACATAAATGTCTTTTGTG 59.365 40.000 6.45 6.45 40.80 3.33
2322 2597 5.304101 TGGGAGCAACATAAATGTCTTTTGT 59.696 36.000 0.00 0.00 40.80 2.83
2330 2605 6.582295 GCGTTATATTGGGAGCAACATAAATG 59.418 38.462 0.00 0.00 0.00 2.32
2354 2629 4.834357 TGTGCACATTGGACATATATGC 57.166 40.909 17.42 5.71 43.78 3.14
2420 2703 7.674120 TCTTGATCTGAATTCTGAACTCTTCA 58.326 34.615 17.62 13.37 38.17 3.02
2510 2805 4.458989 TGAATAATGGTCTGTTGAAGCCAC 59.541 41.667 0.00 0.00 35.68 5.01
2511 2806 4.661222 TGAATAATGGTCTGTTGAAGCCA 58.339 39.130 0.00 0.00 36.78 4.75
2512 2807 5.357878 TGATGAATAATGGTCTGTTGAAGCC 59.642 40.000 0.00 0.00 0.00 4.35
2618 3335 1.648191 CGTTGCCATTTTACGTGCATG 59.352 47.619 3.82 3.82 33.08 4.06
2619 3336 1.268352 ACGTTGCCATTTTACGTGCAT 59.732 42.857 0.00 0.00 45.67 3.96
2625 3342 2.554893 TGAAGGGACGTTGCCATTTTAC 59.445 45.455 0.00 0.00 31.06 2.01
2627 3344 1.339929 GTGAAGGGACGTTGCCATTTT 59.660 47.619 0.00 0.00 31.06 1.82
2628 3345 0.958822 GTGAAGGGACGTTGCCATTT 59.041 50.000 0.00 0.00 31.06 2.32
2629 3346 0.179004 TGTGAAGGGACGTTGCCATT 60.179 50.000 0.00 0.00 34.10 3.16
2630 3347 0.038166 ATGTGAAGGGACGTTGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
2631 3348 0.179004 AATGTGAAGGGACGTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
2632 3349 1.816074 TAATGTGAAGGGACGTTGCC 58.184 50.000 0.00 0.00 0.00 4.52
2633 3350 4.439057 TCTATAATGTGAAGGGACGTTGC 58.561 43.478 0.00 0.00 0.00 4.17
2634 3351 6.978343 TTTCTATAATGTGAAGGGACGTTG 57.022 37.500 0.00 0.00 0.00 4.10
2635 3352 7.391620 TCTTTTCTATAATGTGAAGGGACGTT 58.608 34.615 0.00 0.00 0.00 3.99
2636 3353 6.942976 TCTTTTCTATAATGTGAAGGGACGT 58.057 36.000 0.00 0.00 0.00 4.34
2637 3354 7.843490 TTCTTTTCTATAATGTGAAGGGACG 57.157 36.000 0.00 0.00 0.00 4.79
2638 3355 8.131731 GCATTCTTTTCTATAATGTGAAGGGAC 58.868 37.037 0.00 0.00 33.96 4.46
2639 3356 8.055181 AGCATTCTTTTCTATAATGTGAAGGGA 58.945 33.333 0.00 0.00 33.96 4.20
2640 3357 8.133627 CAGCATTCTTTTCTATAATGTGAAGGG 58.866 37.037 0.00 0.00 33.96 3.95
2641 3358 8.896744 TCAGCATTCTTTTCTATAATGTGAAGG 58.103 33.333 0.00 0.00 33.96 3.46
2680 3427 3.146104 AGCCATGATTAGCGCCTATTT 57.854 42.857 2.29 0.00 0.00 1.40
2700 3447 7.540474 AGGAAAAGACAGAGAGTAATGTGTA 57.460 36.000 0.00 0.00 0.00 2.90
2713 3460 4.351192 CCAACACGAAAAGGAAAAGACAG 58.649 43.478 0.00 0.00 0.00 3.51
2720 3467 2.554893 GCATACCCAACACGAAAAGGAA 59.445 45.455 0.00 0.00 0.00 3.36
2721 3468 2.156098 GCATACCCAACACGAAAAGGA 58.844 47.619 0.00 0.00 0.00 3.36
2722 3469 2.159382 AGCATACCCAACACGAAAAGG 58.841 47.619 0.00 0.00 0.00 3.11
2723 3470 3.915437 AAGCATACCCAACACGAAAAG 57.085 42.857 0.00 0.00 0.00 2.27
2724 3471 4.657436 AAAAGCATACCCAACACGAAAA 57.343 36.364 0.00 0.00 0.00 2.29
2725 3472 4.657436 AAAAAGCATACCCAACACGAAA 57.343 36.364 0.00 0.00 0.00 3.46
2743 3490 8.055181 AGGTCTATTTGATATGCAGAGGAAAAA 58.945 33.333 0.00 0.00 0.00 1.94
2744 3491 7.577303 AGGTCTATTTGATATGCAGAGGAAAA 58.423 34.615 0.00 0.00 0.00 2.29
2745 3492 7.071698 AGAGGTCTATTTGATATGCAGAGGAAA 59.928 37.037 0.00 0.00 0.00 3.13
2746 3493 6.556495 AGAGGTCTATTTGATATGCAGAGGAA 59.444 38.462 0.00 0.00 0.00 3.36
2747 3494 6.080682 AGAGGTCTATTTGATATGCAGAGGA 58.919 40.000 0.00 0.00 0.00 3.71
2748 3495 6.357579 AGAGGTCTATTTGATATGCAGAGG 57.642 41.667 0.00 0.00 0.00 3.69
2749 3496 9.368674 CATAAGAGGTCTATTTGATATGCAGAG 57.631 37.037 0.00 0.00 0.00 3.35
2750 3497 8.874156 ACATAAGAGGTCTATTTGATATGCAGA 58.126 33.333 0.00 0.00 0.00 4.26
2751 3498 9.149225 GACATAAGAGGTCTATTTGATATGCAG 57.851 37.037 0.00 0.00 32.54 4.41
2752 3499 8.097038 GGACATAAGAGGTCTATTTGATATGCA 58.903 37.037 0.00 0.00 35.61 3.96
2753 3500 8.097038 TGGACATAAGAGGTCTATTTGATATGC 58.903 37.037 0.00 0.00 35.61 3.14
2754 3501 9.650539 CTGGACATAAGAGGTCTATTTGATATG 57.349 37.037 0.00 0.00 35.61 1.78
2755 3502 9.386122 ACTGGACATAAGAGGTCTATTTGATAT 57.614 33.333 0.00 0.00 35.61 1.63
2756 3503 8.783660 ACTGGACATAAGAGGTCTATTTGATA 57.216 34.615 0.00 0.00 35.61 2.15
2757 3504 7.682787 ACTGGACATAAGAGGTCTATTTGAT 57.317 36.000 0.00 0.00 35.61 2.57
2758 3505 8.642432 CATACTGGACATAAGAGGTCTATTTGA 58.358 37.037 0.00 0.00 35.61 2.69
2759 3506 8.424918 ACATACTGGACATAAGAGGTCTATTTG 58.575 37.037 0.00 0.00 35.61 2.32
2760 3507 8.554490 ACATACTGGACATAAGAGGTCTATTT 57.446 34.615 0.00 0.00 35.61 1.40
2761 3508 9.656323 TTACATACTGGACATAAGAGGTCTATT 57.344 33.333 0.00 0.00 35.61 1.73
2762 3509 9.656323 TTTACATACTGGACATAAGAGGTCTAT 57.344 33.333 0.00 0.00 35.61 1.98
2763 3510 9.483489 TTTTACATACTGGACATAAGAGGTCTA 57.517 33.333 0.00 0.00 35.61 2.59
2764 3511 7.973048 TTTACATACTGGACATAAGAGGTCT 57.027 36.000 0.00 0.00 35.61 3.85
2765 3512 9.046296 CATTTTACATACTGGACATAAGAGGTC 57.954 37.037 0.00 0.00 34.52 3.85
2766 3513 8.548877 ACATTTTACATACTGGACATAAGAGGT 58.451 33.333 0.00 0.00 0.00 3.85
2767 3514 8.830580 CACATTTTACATACTGGACATAAGAGG 58.169 37.037 0.00 0.00 0.00 3.69
2768 3515 9.599866 TCACATTTTACATACTGGACATAAGAG 57.400 33.333 0.00 0.00 0.00 2.85
2769 3516 9.952030 TTCACATTTTACATACTGGACATAAGA 57.048 29.630 0.00 0.00 0.00 2.10
2771 3518 9.733556 ACTTCACATTTTACATACTGGACATAA 57.266 29.630 0.00 0.00 0.00 1.90
2772 3519 9.733556 AACTTCACATTTTACATACTGGACATA 57.266 29.630 0.00 0.00 0.00 2.29
2773 3520 8.514594 CAACTTCACATTTTACATACTGGACAT 58.485 33.333 0.00 0.00 0.00 3.06
2774 3521 7.717436 TCAACTTCACATTTTACATACTGGACA 59.283 33.333 0.00 0.00 0.00 4.02
2775 3522 8.094798 TCAACTTCACATTTTACATACTGGAC 57.905 34.615 0.00 0.00 0.00 4.02
2776 3523 8.862325 ATCAACTTCACATTTTACATACTGGA 57.138 30.769 0.00 0.00 0.00 3.86
2777 3524 9.559958 GAATCAACTTCACATTTTACATACTGG 57.440 33.333 0.00 0.00 33.78 4.00
2873 3620 9.158233 CCACGAAAAGGAAAAGACATACTATAA 57.842 33.333 0.00 0.00 0.00 0.98
2874 3621 8.316214 ACCACGAAAAGGAAAAGACATACTATA 58.684 33.333 0.00 0.00 0.00 1.31
2875 3622 7.119262 CACCACGAAAAGGAAAAGACATACTAT 59.881 37.037 0.00 0.00 0.00 2.12
2876 3623 6.425721 CACCACGAAAAGGAAAAGACATACTA 59.574 38.462 0.00 0.00 0.00 1.82
2877 3624 5.238650 CACCACGAAAAGGAAAAGACATACT 59.761 40.000 0.00 0.00 0.00 2.12
2878 3625 5.449304 CACCACGAAAAGGAAAAGACATAC 58.551 41.667 0.00 0.00 0.00 2.39
2879 3626 4.517453 CCACCACGAAAAGGAAAAGACATA 59.483 41.667 0.00 0.00 0.00 2.29
2880 3627 3.317993 CCACCACGAAAAGGAAAAGACAT 59.682 43.478 0.00 0.00 0.00 3.06
2881 3628 2.685897 CCACCACGAAAAGGAAAAGACA 59.314 45.455 0.00 0.00 0.00 3.41
2882 3629 2.034179 CCCACCACGAAAAGGAAAAGAC 59.966 50.000 0.00 0.00 0.00 3.01
2883 3630 2.303175 CCCACCACGAAAAGGAAAAGA 58.697 47.619 0.00 0.00 0.00 2.52
2884 3631 2.028876 ACCCACCACGAAAAGGAAAAG 58.971 47.619 0.00 0.00 0.00 2.27
2885 3632 2.146920 ACCCACCACGAAAAGGAAAA 57.853 45.000 0.00 0.00 0.00 2.29
2890 3637 3.316868 ACAAACATACCCACCACGAAAAG 59.683 43.478 0.00 0.00 0.00 2.27
3063 3810 0.765510 GGACAGGGTCTTCAGGTTGT 59.234 55.000 0.00 0.00 32.47 3.32
3090 3837 2.118679 AGTCTGCAGCCATACACCATA 58.881 47.619 9.47 0.00 0.00 2.74
3892 4786 1.447314 GGGCGTCGAGAATTTCCGT 60.447 57.895 0.00 0.00 0.00 4.69
3894 4788 0.175989 AGAGGGCGTCGAGAATTTCC 59.824 55.000 0.00 0.00 0.00 3.13
3921 4816 2.025898 CCATCAGCCATGCATGTTACA 58.974 47.619 24.58 6.99 0.00 2.41
4039 4941 5.746245 CGTTACAGGAACAAAGCAAAAATGA 59.254 36.000 0.00 0.00 37.99 2.57
4198 5109 2.662866 TGGAACGGAGGGAGTAGTATG 58.337 52.381 0.00 0.00 0.00 2.39
4239 5165 9.901724 CAAAAGCGTTCTTATATTACACTAGTG 57.098 33.333 21.44 21.44 31.02 2.74
4244 5170 8.440833 AGTGTCAAAAGCGTTCTTATATTACAC 58.559 33.333 0.00 0.00 32.20 2.90
4258 5213 5.652744 AAACTACACTAGTGTCAAAAGCG 57.347 39.130 31.11 13.90 43.74 4.68
4300 5255 6.543100 CGTTCTAGTACTATTCCCTCTGTTCT 59.457 42.308 2.33 0.00 0.00 3.01
4301 5256 6.541641 TCGTTCTAGTACTATTCCCTCTGTTC 59.458 42.308 2.33 0.00 0.00 3.18
4302 5257 6.421485 TCGTTCTAGTACTATTCCCTCTGTT 58.579 40.000 2.33 0.00 0.00 3.16
4318 5273 6.184580 ACTGTTACTGTCATCTCGTTCTAG 57.815 41.667 0.00 0.00 0.00 2.43
4419 5419 1.865865 ACTTGCCGGTATTATCAGCG 58.134 50.000 1.90 0.00 39.07 5.18
4456 5456 5.696030 AGATGCTCTAAGGGTTTATTTCCC 58.304 41.667 0.00 0.00 44.90 3.97
4470 5499 0.461548 CCGCTGTTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
4619 5648 1.589414 AGATGTGAGGAAGAAGGGGG 58.411 55.000 0.00 0.00 0.00 5.40
4633 5662 1.447643 GTGATGGGGCGCTAGATGT 59.552 57.895 7.64 0.00 0.00 3.06
4687 5716 4.144681 CTGCTTCGAGCGCACAGC 62.145 66.667 11.47 10.37 46.26 4.40
4743 5772 0.459585 GCGGATCTCCACGTAAAGCA 60.460 55.000 0.00 0.00 35.14 3.91
4769 5798 4.702081 GACACCGAGACGCACGCT 62.702 66.667 0.00 0.00 0.00 5.07
4792 5821 2.967397 TCGTTGGCGGTCTCGAAT 59.033 55.556 0.00 0.00 39.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.