Multiple sequence alignment - TraesCS2B01G141600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G141600 chr2B 100.000 2892 0 0 1 2892 107962291 107965182 0.000000e+00 5341.0
1 TraesCS2B01G141600 chr2D 95.528 872 30 3 760 1622 71682303 71683174 0.000000e+00 1386.0
2 TraesCS2B01G141600 chr2D 90.549 656 22 10 1680 2305 71683174 71683819 0.000000e+00 832.0
3 TraesCS2B01G141600 chr2D 85.746 456 30 7 1 436 71680484 71680924 1.580000e-122 449.0
4 TraesCS2B01G141600 chr2D 85.491 448 24 16 1887 2304 71686652 71687088 2.060000e-116 429.0
5 TraesCS2B01G141600 chr2D 93.411 258 14 2 2305 2562 71683866 71684120 2.100000e-101 379.0
6 TraesCS2B01G141600 chr2D 95.726 117 5 0 2773 2889 420278323 420278207 3.800000e-44 189.0
7 TraesCS2B01G141600 chr2D 95.789 95 4 0 2682 2776 71684112 71684206 1.390000e-33 154.0
8 TraesCS2B01G141600 chr2D 93.617 94 6 0 2577 2670 177813212 177813119 1.080000e-29 141.0
9 TraesCS2B01G141600 chr2D 92.784 97 7 0 2574 2670 533027134 533027230 1.080000e-29 141.0
10 TraesCS2B01G141600 chr2A 93.056 936 41 16 698 1623 70705796 70706717 0.000000e+00 1347.0
11 TraesCS2B01G141600 chr2A 93.737 495 12 10 1680 2158 70706720 70707211 0.000000e+00 725.0
12 TraesCS2B01G141600 chr2A 85.480 427 35 13 18 421 70703365 70703787 1.240000e-113 420.0
13 TraesCS2B01G141600 chr2A 99.087 219 2 0 463 681 102138294 102138512 7.510000e-106 394.0
14 TraesCS2B01G141600 chr2A 78.882 161 13 14 2164 2304 70707248 70707407 3.970000e-14 89.8
15 TraesCS2B01G141600 chr2A 95.745 47 2 0 424 470 70705642 70705688 3.090000e-10 76.8
16 TraesCS2B01G141600 chr1A 99.552 223 0 1 459 681 532321278 532321499 3.470000e-109 405.0
17 TraesCS2B01G141600 chr7B 99.107 224 2 0 458 681 491109089 491109312 1.250000e-108 403.0
18 TraesCS2B01G141600 chr7B 100.000 28 0 0 1643 1670 544131604 544131631 5.000000e-03 52.8
19 TraesCS2B01G141600 chr3A 99.099 222 1 1 461 681 149722746 149722525 5.810000e-107 398.0
20 TraesCS2B01G141600 chr3A 92.157 102 5 1 2580 2681 481679625 481679527 1.080000e-29 141.0
21 TraesCS2B01G141600 chr6A 97.425 233 3 3 450 681 552834769 552834539 7.510000e-106 394.0
22 TraesCS2B01G141600 chr6A 95.690 116 5 0 2774 2889 435778206 435778321 1.370000e-43 187.0
23 TraesCS2B01G141600 chr6A 95.690 116 5 0 2774 2889 458217709 458217824 1.370000e-43 187.0
24 TraesCS2B01G141600 chr7A 98.649 222 2 1 461 681 725204805 725204584 2.700000e-105 392.0
25 TraesCS2B01G141600 chr7A 96.970 231 5 2 451 681 286994391 286994619 1.260000e-103 387.0
26 TraesCS2B01G141600 chr7A 90.370 135 13 0 2755 2889 195397149 195397283 8.230000e-41 178.0
27 TraesCS2B01G141600 chr5A 98.649 222 2 1 460 681 675426087 675426307 2.700000e-105 392.0
28 TraesCS2B01G141600 chr3B 99.087 219 1 1 463 681 77641560 77641777 2.700000e-105 392.0
29 TraesCS2B01G141600 chr3D 96.581 117 4 0 2773 2889 412074486 412074602 8.180000e-46 195.0
30 TraesCS2B01G141600 chr6D 96.522 115 4 0 2775 2889 366480276 366480390 1.060000e-44 191.0
31 TraesCS2B01G141600 chr4D 96.522 115 4 0 2775 2889 498687758 498687872 1.060000e-44 191.0
32 TraesCS2B01G141600 chr1D 95.690 116 5 0 2774 2889 411892159 411892044 1.370000e-43 187.0
33 TraesCS2B01G141600 chr7D 91.473 129 11 0 2761 2889 573114507 573114635 8.230000e-41 178.0
34 TraesCS2B01G141600 chr5D 92.708 96 5 1 2577 2670 326374210 326374115 1.400000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G141600 chr2B 107962291 107965182 2891 False 5341.000000 5341 100.000000 1 2892 1 chr2B.!!$F1 2891
1 TraesCS2B01G141600 chr2D 71680484 71687088 6604 False 604.833333 1386 91.085667 1 2776 6 chr2D.!!$F2 2775
2 TraesCS2B01G141600 chr2A 70703365 70707407 4042 False 531.720000 1347 89.380000 18 2304 5 chr2A.!!$F2 2286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 3079 0.108329 ACGGTTAGATGGGCGAACAG 60.108 55.0 0.00 0.00 34.25 3.16 F
1631 4025 0.329596 AAGGTACGTACTCTCCCCGT 59.670 55.0 24.07 3.09 38.53 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 4144 0.034476 TCAGTGACTGAAGGCTGCTG 59.966 55.0 13.74 0.0 37.57 4.41 R
2599 5115 0.326713 GGGCTCTTTACCCCCTCTCT 60.327 60.0 0.00 0.0 42.01 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.619255 TCGAAGGATGGGGTGGCTAA 60.619 55.000 0.00 0.00 0.00 3.09
188 193 2.039746 TGTATTTGACAGGTGGGACCAG 59.960 50.000 0.00 0.00 41.95 4.00
217 222 6.528423 GTCATGGAGATGTATACTATGCGAAC 59.472 42.308 4.17 0.00 0.00 3.95
226 231 6.167685 TGTATACTATGCGAACCAGTTTGTT 58.832 36.000 4.17 0.00 0.00 2.83
234 239 0.822121 AACCAGTTTGTTCCTCCGCC 60.822 55.000 0.00 0.00 0.00 6.13
253 258 2.996734 CAAGCGGGCCCCATGTTT 60.997 61.111 18.66 3.42 0.00 2.83
302 311 5.046663 TGAAATATGTCAGGTCAGTGCACTA 60.047 40.000 21.20 5.45 0.00 2.74
372 396 0.804989 GTATTTCGCAACTGCAGGCT 59.195 50.000 19.93 0.99 42.21 4.58
436 2724 1.545651 CCTCTCCTGTTTGGGGTGAAC 60.546 57.143 0.00 0.00 37.63 3.18
438 2726 1.780309 TCTCCTGTTTGGGGTGAACAT 59.220 47.619 0.00 0.00 37.63 2.71
470 2759 7.877097 CAGGCTGCTGATCTTAATTTATCTACT 59.123 37.037 0.00 0.00 0.00 2.57
471 2760 8.093927 AGGCTGCTGATCTTAATTTATCTACTC 58.906 37.037 0.00 0.00 0.00 2.59
472 2761 7.333174 GGCTGCTGATCTTAATTTATCTACTCC 59.667 40.741 0.00 0.00 0.00 3.85
473 2762 7.333174 GCTGCTGATCTTAATTTATCTACTCCC 59.667 40.741 0.00 0.00 0.00 4.30
474 2763 8.497910 TGCTGATCTTAATTTATCTACTCCCT 57.502 34.615 0.00 0.00 0.00 4.20
475 2764 8.589338 TGCTGATCTTAATTTATCTACTCCCTC 58.411 37.037 0.00 0.00 0.00 4.30
476 2765 8.038351 GCTGATCTTAATTTATCTACTCCCTCC 58.962 40.741 0.00 0.00 0.00 4.30
477 2766 8.123639 TGATCTTAATTTATCTACTCCCTCCG 57.876 38.462 0.00 0.00 0.00 4.63
478 2767 7.728981 TGATCTTAATTTATCTACTCCCTCCGT 59.271 37.037 0.00 0.00 0.00 4.69
479 2768 7.521871 TCTTAATTTATCTACTCCCTCCGTC 57.478 40.000 0.00 0.00 0.00 4.79
480 2769 6.492772 TCTTAATTTATCTACTCCCTCCGTCC 59.507 42.308 0.00 0.00 0.00 4.79
481 2770 2.267174 TTATCTACTCCCTCCGTCCG 57.733 55.000 0.00 0.00 0.00 4.79
482 2771 0.399454 TATCTACTCCCTCCGTCCGG 59.601 60.000 0.00 0.00 0.00 5.14
483 2772 2.354755 ATCTACTCCCTCCGTCCGGG 62.355 65.000 0.00 0.00 43.38 5.73
484 2773 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
485 2774 3.650298 TACTCCCTCCGTCCGGGTG 62.650 68.421 0.00 0.00 42.56 4.61
487 2776 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
488 2777 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
489 2778 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
490 2779 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
491 2780 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
492 2781 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
493 2782 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
494 2783 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
495 2784 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
496 2785 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
497 2786 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
498 2787 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
499 2788 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
500 2789 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
501 2790 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
502 2791 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
503 2792 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
504 2793 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
505 2794 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
506 2795 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
507 2796 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
508 2797 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
509 2798 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
510 2799 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
511 2800 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
512 2801 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
513 2802 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
514 2803 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
515 2804 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
516 2805 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
517 2806 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
518 2807 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
519 2808 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
520 2809 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
521 2810 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
522 2811 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
523 2812 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
524 2813 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
525 2814 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
526 2815 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
527 2816 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
528 2817 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
529 2818 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
530 2819 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
531 2820 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
532 2821 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
534 2823 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
535 2824 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
571 2860 9.832445 TCATGAAAAGTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 36.04 3.13
572 2861 9.613428 CATGAAAAGTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 36.04 3.53
573 2862 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
574 2863 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
575 2864 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
576 2865 6.145338 AGTATACCACTAGATTTCCACACG 57.855 41.667 0.00 0.00 34.98 4.49
577 2866 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
578 2867 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
579 2868 2.838202 ACCACTAGATTTCCACACGGAT 59.162 45.455 0.00 0.00 42.41 4.18
580 2869 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
581 2870 3.369471 CCACTAGATTTCCACACGGATGT 60.369 47.826 0.00 0.00 42.41 3.06
582 2871 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
583 2872 5.043903 CACTAGATTTCCACACGGATGTAG 58.956 45.833 0.00 0.00 42.41 2.74
584 2873 4.710375 ACTAGATTTCCACACGGATGTAGT 59.290 41.667 0.00 0.00 42.41 2.73
585 2874 4.553330 AGATTTCCACACGGATGTAGTT 57.447 40.909 0.00 0.00 42.41 2.24
586 2875 4.906618 AGATTTCCACACGGATGTAGTTT 58.093 39.130 0.00 0.00 42.41 2.66
587 2876 4.935808 AGATTTCCACACGGATGTAGTTTC 59.064 41.667 0.00 0.00 42.41 2.78
588 2877 4.345859 TTTCCACACGGATGTAGTTTCT 57.654 40.909 0.00 0.00 42.41 2.52
589 2878 5.471556 TTTCCACACGGATGTAGTTTCTA 57.528 39.130 0.00 0.00 42.41 2.10
590 2879 5.471556 TTCCACACGGATGTAGTTTCTAA 57.528 39.130 0.00 0.00 42.41 2.10
591 2880 5.471556 TCCACACGGATGTAGTTTCTAAA 57.528 39.130 0.00 0.00 36.72 1.85
592 2881 6.045072 TCCACACGGATGTAGTTTCTAAAT 57.955 37.500 0.00 0.00 36.72 1.40
593 2882 7.172868 TCCACACGGATGTAGTTTCTAAATA 57.827 36.000 0.00 0.00 36.72 1.40
594 2883 7.788026 TCCACACGGATGTAGTTTCTAAATAT 58.212 34.615 0.00 0.00 36.72 1.28
595 2884 8.916062 TCCACACGGATGTAGTTTCTAAATATA 58.084 33.333 0.00 0.00 36.72 0.86
596 2885 9.706691 CCACACGGATGTAGTTTCTAAATATAT 57.293 33.333 0.00 0.00 36.72 0.86
654 2943 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
655 2944 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
656 2945 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
657 2946 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
658 2947 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
659 2948 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
660 2949 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
661 2950 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
662 2951 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
663 2952 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
664 2953 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
665 2954 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
666 2955 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
667 2956 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
668 2957 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
669 2958 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
670 2959 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
671 2960 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
672 2961 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
673 2962 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
674 2963 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
675 2964 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
700 2989 0.810031 CCTCAACGGTTAGATGGGCG 60.810 60.000 0.00 0.00 0.00 6.13
705 3079 0.108329 ACGGTTAGATGGGCGAACAG 60.108 55.000 0.00 0.00 34.25 3.16
872 3246 2.953020 TGCGCCCAACAATAAATGAAC 58.047 42.857 4.18 0.00 0.00 3.18
984 3358 1.536284 GCCTCCGCGCACCTATATATC 60.536 57.143 8.75 0.00 0.00 1.63
1030 3404 2.188994 CAGCCAGCTCTGCTACCC 59.811 66.667 6.94 0.00 36.40 3.69
1389 3777 2.810486 CGGCAGCTACGCTATAACC 58.190 57.895 0.00 0.00 36.40 2.85
1394 3782 0.468771 AGCTACGCTATAACCCCCGT 60.469 55.000 0.00 0.00 36.99 5.28
1395 3783 0.390492 GCTACGCTATAACCCCCGTT 59.610 55.000 0.00 0.00 35.36 4.44
1419 3813 3.119096 GCCGTCAAGGAACTCGCC 61.119 66.667 0.00 0.00 45.00 5.54
1584 3978 2.372264 GTCAACATCAGCACCATGGAT 58.628 47.619 21.47 0.00 0.00 3.41
1622 4016 2.159462 CCTTCGTCCTCAAGGTACGTAC 60.159 54.545 17.56 17.56 38.72 3.67
1623 4017 2.479566 TCGTCCTCAAGGTACGTACT 57.520 50.000 24.07 8.57 38.72 2.73
1624 4018 2.350522 TCGTCCTCAAGGTACGTACTC 58.649 52.381 24.07 14.56 38.72 2.59
1625 4019 2.027745 TCGTCCTCAAGGTACGTACTCT 60.028 50.000 24.07 16.45 38.72 3.24
1626 4020 2.351111 CGTCCTCAAGGTACGTACTCTC 59.649 54.545 24.07 8.86 35.52 3.20
1627 4021 2.682352 GTCCTCAAGGTACGTACTCTCC 59.318 54.545 24.07 8.69 36.34 3.71
1628 4022 2.022934 CCTCAAGGTACGTACTCTCCC 58.977 57.143 24.07 8.31 0.00 4.30
1629 4023 2.022934 CTCAAGGTACGTACTCTCCCC 58.977 57.143 24.07 7.57 0.00 4.81
1630 4024 0.737219 CAAGGTACGTACTCTCCCCG 59.263 60.000 24.07 6.96 0.00 5.73
1631 4025 0.329596 AAGGTACGTACTCTCCCCGT 59.670 55.000 24.07 3.09 38.53 5.28
1632 4026 0.329596 AGGTACGTACTCTCCCCGTT 59.670 55.000 24.07 0.00 36.12 4.44
1633 4027 0.735471 GGTACGTACTCTCCCCGTTC 59.265 60.000 24.07 0.85 36.12 3.95
1634 4028 0.735471 GTACGTACTCTCCCCGTTCC 59.265 60.000 18.47 0.00 36.12 3.62
1635 4029 0.620556 TACGTACTCTCCCCGTTCCT 59.379 55.000 0.00 0.00 36.12 3.36
1636 4030 0.620556 ACGTACTCTCCCCGTTCCTA 59.379 55.000 0.00 0.00 0.00 2.94
1637 4031 1.004745 ACGTACTCTCCCCGTTCCTAA 59.995 52.381 0.00 0.00 0.00 2.69
1638 4032 2.094675 CGTACTCTCCCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
1639 4033 2.692041 CGTACTCTCCCCGTTCCTAAAT 59.308 50.000 0.00 0.00 0.00 1.40
1640 4034 3.885297 CGTACTCTCCCCGTTCCTAAATA 59.115 47.826 0.00 0.00 0.00 1.40
1641 4035 4.023365 CGTACTCTCCCCGTTCCTAAATAG 60.023 50.000 0.00 0.00 0.00 1.73
1642 4036 4.261411 ACTCTCCCCGTTCCTAAATAGA 57.739 45.455 0.00 0.00 0.00 1.98
1643 4037 4.817286 ACTCTCCCCGTTCCTAAATAGAT 58.183 43.478 0.00 0.00 0.00 1.98
1644 4038 5.217400 ACTCTCCCCGTTCCTAAATAGATT 58.783 41.667 0.00 0.00 0.00 2.40
1645 4039 5.666265 ACTCTCCCCGTTCCTAAATAGATTT 59.334 40.000 0.00 0.00 0.00 2.17
1646 4040 6.842807 ACTCTCCCCGTTCCTAAATAGATTTA 59.157 38.462 0.00 0.00 0.00 1.40
1647 4041 7.015389 ACTCTCCCCGTTCCTAAATAGATTTAG 59.985 40.741 13.04 13.04 45.45 1.85
1648 4042 6.842807 TCTCCCCGTTCCTAAATAGATTTAGT 59.157 38.462 16.92 0.00 44.77 2.24
1649 4043 8.006564 TCTCCCCGTTCCTAAATAGATTTAGTA 58.993 37.037 16.92 3.05 44.77 1.82
1650 4044 8.731591 TCCCCGTTCCTAAATAGATTTAGTAT 57.268 34.615 16.92 0.00 44.77 2.12
1651 4045 9.827198 TCCCCGTTCCTAAATAGATTTAGTATA 57.173 33.333 16.92 4.09 44.77 1.47
1746 4144 0.804544 TCCGTGAACGCATTCGATCC 60.805 55.000 0.00 0.00 37.69 3.36
1750 4148 0.390998 TGAACGCATTCGATCCAGCA 60.391 50.000 0.00 0.00 37.69 4.41
1762 4163 0.035630 ATCCAGCAGCCTTCAGTCAC 60.036 55.000 0.00 0.00 0.00 3.67
2151 4565 9.651718 CTCGGACTTATACTTATTTGCAATTTC 57.348 33.333 0.00 0.00 0.00 2.17
2152 4566 9.391006 TCGGACTTATACTTATTTGCAATTTCT 57.609 29.630 0.00 0.00 0.00 2.52
2213 4683 3.480133 CCCCTAGCTGGAACCGGG 61.480 72.222 6.32 0.00 38.35 5.73
2250 4720 6.436843 AACCAAAGAACAACAGAACAGTAG 57.563 37.500 0.00 0.00 0.00 2.57
2316 4832 7.860613 CATCTTGTGATGTAGTACAAAACACA 58.139 34.615 24.10 24.10 43.68 3.72
2324 4840 4.573201 TGTAGTACAAAACACAGTTCCAGC 59.427 41.667 0.00 0.00 0.00 4.85
2359 4875 1.065410 ACACACCATTGGGAGGGTCA 61.065 55.000 7.78 0.00 36.60 4.02
2369 4885 2.915869 TGGGAGGGTCAGAATTGTACT 58.084 47.619 0.00 0.00 0.00 2.73
2377 4893 4.385825 GGTCAGAATTGTACTGGAACACA 58.614 43.478 0.00 0.00 36.22 3.72
2378 4894 4.819630 GGTCAGAATTGTACTGGAACACAA 59.180 41.667 0.00 0.00 38.89 3.33
2381 4897 4.509970 CAGAATTGTACTGGAACACAACGA 59.490 41.667 0.00 0.00 37.47 3.85
2400 4916 7.114670 CACAACGATGTTGCTTTTTGATGATAA 59.885 33.333 9.45 0.00 37.82 1.75
2410 4926 5.743872 GCTTTTTGATGATAACGGAATGTCC 59.256 40.000 0.00 0.00 0.00 4.02
2411 4927 6.624861 GCTTTTTGATGATAACGGAATGTCCA 60.625 38.462 0.00 0.00 35.91 4.02
2481 4997 4.162690 GGCCAGGAGGTACCAGCG 62.163 72.222 15.94 0.00 39.90 5.18
2499 5015 4.023707 CCAGCGAAAAGTCACTCAAAGATT 60.024 41.667 0.00 0.00 0.00 2.40
2502 5018 4.214332 GCGAAAAGTCACTCAAAGATTCCT 59.786 41.667 0.00 0.00 0.00 3.36
2521 5037 4.744570 TCCTAACAAGAGCAATACACTCG 58.255 43.478 0.00 0.00 39.23 4.18
2534 5050 1.006571 CACTCGTGTAGCAACCCGT 60.007 57.895 0.00 0.00 0.00 5.28
2535 5051 0.241749 CACTCGTGTAGCAACCCGTA 59.758 55.000 0.00 0.00 0.00 4.02
2591 5107 8.821147 TTTTTAGGAACGTGCGTATCATATAT 57.179 30.769 0.00 0.00 0.00 0.86
2592 5108 8.821147 TTTTAGGAACGTGCGTATCATATATT 57.179 30.769 0.00 0.00 0.00 1.28
2593 5109 9.911138 TTTTAGGAACGTGCGTATCATATATTA 57.089 29.630 0.00 0.00 0.00 0.98
2594 5110 9.563898 TTTAGGAACGTGCGTATCATATATTAG 57.436 33.333 0.00 0.00 0.00 1.73
2595 5111 7.387119 AGGAACGTGCGTATCATATATTAGA 57.613 36.000 0.00 0.00 0.00 2.10
2596 5112 7.473366 AGGAACGTGCGTATCATATATTAGAG 58.527 38.462 0.00 0.00 0.00 2.43
2597 5113 7.336176 AGGAACGTGCGTATCATATATTAGAGA 59.664 37.037 0.00 0.00 0.00 3.10
2598 5114 7.966753 GGAACGTGCGTATCATATATTAGAGAA 59.033 37.037 0.00 0.00 0.00 2.87
2599 5115 9.338291 GAACGTGCGTATCATATATTAGAGAAA 57.662 33.333 0.00 0.00 0.00 2.52
2600 5116 8.897457 ACGTGCGTATCATATATTAGAGAAAG 57.103 34.615 0.00 0.00 0.00 2.62
2601 5117 8.727910 ACGTGCGTATCATATATTAGAGAAAGA 58.272 33.333 0.00 0.00 0.00 2.52
2602 5118 9.216087 CGTGCGTATCATATATTAGAGAAAGAG 57.784 37.037 0.00 0.00 0.00 2.85
2605 5121 9.944663 GCGTATCATATATTAGAGAAAGAGAGG 57.055 37.037 0.00 0.00 0.00 3.69
2608 5124 8.852671 ATCATATATTAGAGAAAGAGAGGGGG 57.147 38.462 0.00 0.00 0.00 5.40
2609 5125 7.780822 TCATATATTAGAGAAAGAGAGGGGGT 58.219 38.462 0.00 0.00 0.00 4.95
2610 5126 8.912285 TCATATATTAGAGAAAGAGAGGGGGTA 58.088 37.037 0.00 0.00 0.00 3.69
2611 5127 9.548631 CATATATTAGAGAAAGAGAGGGGGTAA 57.451 37.037 0.00 0.00 0.00 2.85
2613 5129 6.816616 ATTAGAGAAAGAGAGGGGGTAAAG 57.183 41.667 0.00 0.00 0.00 1.85
2614 5130 4.421574 AGAGAAAGAGAGGGGGTAAAGA 57.578 45.455 0.00 0.00 0.00 2.52
2615 5131 4.358214 AGAGAAAGAGAGGGGGTAAAGAG 58.642 47.826 0.00 0.00 0.00 2.85
2616 5132 2.841266 AGAAAGAGAGGGGGTAAAGAGC 59.159 50.000 0.00 0.00 0.00 4.09
2617 5133 1.585895 AAGAGAGGGGGTAAAGAGCC 58.414 55.000 0.00 0.00 43.02 4.70
2623 5139 2.275748 GGGTAAAGAGCCCCTGCC 59.724 66.667 0.00 0.00 40.26 4.85
2624 5140 2.612493 GGGTAAAGAGCCCCTGCCA 61.612 63.158 0.00 0.00 40.26 4.92
2625 5141 1.378646 GGTAAAGAGCCCCTGCCAC 60.379 63.158 0.00 0.00 38.69 5.01
2626 5142 1.378646 GTAAAGAGCCCCTGCCACC 60.379 63.158 0.00 0.00 38.69 4.61
2627 5143 1.850289 TAAAGAGCCCCTGCCACCA 60.850 57.895 0.00 0.00 38.69 4.17
2628 5144 1.431195 TAAAGAGCCCCTGCCACCAA 61.431 55.000 0.00 0.00 38.69 3.67
2629 5145 2.097978 AAAGAGCCCCTGCCACCAAT 62.098 55.000 0.00 0.00 38.69 3.16
2630 5146 2.757099 GAGCCCCTGCCACCAATG 60.757 66.667 0.00 0.00 38.69 2.82
2631 5147 3.590466 GAGCCCCTGCCACCAATGT 62.590 63.158 0.00 0.00 38.69 2.71
2632 5148 3.070576 GCCCCTGCCACCAATGTC 61.071 66.667 0.00 0.00 0.00 3.06
2633 5149 2.765969 CCCCTGCCACCAATGTCT 59.234 61.111 0.00 0.00 0.00 3.41
2634 5150 1.077265 CCCCTGCCACCAATGTCTT 59.923 57.895 0.00 0.00 0.00 3.01
2635 5151 0.331278 CCCCTGCCACCAATGTCTTA 59.669 55.000 0.00 0.00 0.00 2.10
2636 5152 1.463674 CCCTGCCACCAATGTCTTAC 58.536 55.000 0.00 0.00 0.00 2.34
2637 5153 1.271871 CCCTGCCACCAATGTCTTACA 60.272 52.381 0.00 0.00 0.00 2.41
2638 5154 2.086869 CCTGCCACCAATGTCTTACAG 58.913 52.381 0.00 0.00 0.00 2.74
2639 5155 2.086869 CTGCCACCAATGTCTTACAGG 58.913 52.381 0.00 0.00 0.00 4.00
2640 5156 0.811281 GCCACCAATGTCTTACAGGC 59.189 55.000 0.00 0.00 0.00 4.85
2641 5157 1.086696 CCACCAATGTCTTACAGGCG 58.913 55.000 0.00 0.00 0.00 5.52
2642 5158 1.338674 CCACCAATGTCTTACAGGCGA 60.339 52.381 0.00 0.00 0.00 5.54
2643 5159 2.632377 CACCAATGTCTTACAGGCGAT 58.368 47.619 0.00 0.00 0.00 4.58
2644 5160 3.009723 CACCAATGTCTTACAGGCGATT 58.990 45.455 0.00 0.00 0.00 3.34
2645 5161 4.188462 CACCAATGTCTTACAGGCGATTA 58.812 43.478 0.00 0.00 0.00 1.75
2646 5162 4.034048 CACCAATGTCTTACAGGCGATTAC 59.966 45.833 0.00 0.00 0.00 1.89
2647 5163 4.188462 CCAATGTCTTACAGGCGATTACA 58.812 43.478 0.00 0.00 0.00 2.41
2648 5164 4.634004 CCAATGTCTTACAGGCGATTACAA 59.366 41.667 0.00 0.00 0.00 2.41
2649 5165 5.220662 CCAATGTCTTACAGGCGATTACAAG 60.221 44.000 0.00 0.00 0.00 3.16
2650 5166 3.259064 TGTCTTACAGGCGATTACAAGC 58.741 45.455 0.00 0.00 0.00 4.01
2655 5171 4.195308 GGCGATTACAAGCCGTGA 57.805 55.556 0.00 0.00 44.22 4.35
2656 5172 1.713830 GGCGATTACAAGCCGTGAC 59.286 57.895 0.00 0.00 44.22 3.67
2657 5173 0.739813 GGCGATTACAAGCCGTGACT 60.740 55.000 0.00 0.00 44.22 3.41
2658 5174 0.645868 GCGATTACAAGCCGTGACTC 59.354 55.000 0.00 0.00 0.00 3.36
2659 5175 1.990799 CGATTACAAGCCGTGACTCA 58.009 50.000 0.00 0.00 0.00 3.41
2660 5176 2.333926 CGATTACAAGCCGTGACTCAA 58.666 47.619 0.00 0.00 0.00 3.02
2661 5177 2.092211 CGATTACAAGCCGTGACTCAAC 59.908 50.000 0.00 0.00 0.00 3.18
2662 5178 1.493772 TTACAAGCCGTGACTCAACG 58.506 50.000 0.00 0.00 43.20 4.10
2668 5184 3.041940 CGTGACTCAACGGCCCAC 61.042 66.667 0.00 0.00 39.89 4.61
2669 5185 2.668550 GTGACTCAACGGCCCACC 60.669 66.667 0.00 0.00 0.00 4.61
2670 5186 3.164977 TGACTCAACGGCCCACCA 61.165 61.111 0.00 0.00 34.57 4.17
2671 5187 2.112297 GACTCAACGGCCCACCAA 59.888 61.111 0.00 0.00 34.57 3.67
2672 5188 1.303317 GACTCAACGGCCCACCAAT 60.303 57.895 0.00 0.00 34.57 3.16
2673 5189 1.586154 GACTCAACGGCCCACCAATG 61.586 60.000 0.00 0.00 34.57 2.82
2674 5190 1.603455 CTCAACGGCCCACCAATGT 60.603 57.895 0.00 0.00 34.57 2.71
2675 5191 1.586154 CTCAACGGCCCACCAATGTC 61.586 60.000 0.00 0.00 34.57 3.06
2676 5192 2.282887 AACGGCCCACCAATGTCC 60.283 61.111 0.00 0.00 34.57 4.02
2677 5193 3.140073 AACGGCCCACCAATGTCCA 62.140 57.895 0.00 0.00 34.57 4.02
2678 5194 2.282816 CGGCCCACCAATGTCCAA 60.283 61.111 0.00 0.00 34.57 3.53
2679 5195 1.682005 CGGCCCACCAATGTCCAAT 60.682 57.895 0.00 0.00 34.57 3.16
2680 5196 0.395036 CGGCCCACCAATGTCCAATA 60.395 55.000 0.00 0.00 34.57 1.90
2681 5197 1.402787 GGCCCACCAATGTCCAATAG 58.597 55.000 0.00 0.00 35.26 1.73
2682 5198 0.746659 GCCCACCAATGTCCAATAGC 59.253 55.000 0.00 0.00 0.00 2.97
2683 5199 1.686115 GCCCACCAATGTCCAATAGCT 60.686 52.381 0.00 0.00 0.00 3.32
2684 5200 2.738743 CCCACCAATGTCCAATAGCTT 58.261 47.619 0.00 0.00 0.00 3.74
2685 5201 2.428171 CCCACCAATGTCCAATAGCTTG 59.572 50.000 0.00 0.00 0.00 4.01
2710 5226 2.287308 GGTTCTATTTGCACAACACGCA 60.287 45.455 0.00 0.00 37.68 5.24
2721 5237 3.548014 GCACAACACGCAATTGACTAACT 60.548 43.478 10.34 0.00 0.00 2.24
2735 5251 9.681692 CAATTGACTAACTCTCTAGATGATCTG 57.318 37.037 4.96 0.00 0.00 2.90
2776 5292 3.206150 CACTTATGGGTCTGGCATGTAC 58.794 50.000 0.00 0.00 0.00 2.90
2777 5293 3.115390 ACTTATGGGTCTGGCATGTACT 58.885 45.455 0.00 0.00 0.00 2.73
2778 5294 3.134804 ACTTATGGGTCTGGCATGTACTC 59.865 47.826 0.00 0.00 0.00 2.59
2779 5295 0.839946 ATGGGTCTGGCATGTACTCC 59.160 55.000 0.00 0.00 0.00 3.85
2780 5296 1.271840 TGGGTCTGGCATGTACTCCC 61.272 60.000 0.00 1.59 0.00 4.30
2782 5298 0.466124 GGTCTGGCATGTACTCCCTC 59.534 60.000 0.00 0.00 0.00 4.30
2784 5300 1.043116 TCTGGCATGTACTCCCTCCG 61.043 60.000 0.00 0.00 0.00 4.63
2785 5301 1.305802 TGGCATGTACTCCCTCCGT 60.306 57.895 0.00 0.00 0.00 4.69
2786 5302 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
2787 5303 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
2788 5304 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
2790 5306 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
2792 5308 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2793 5309 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2796 5312 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2797 5313 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2799 5315 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2800 5316 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2801 5317 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2802 5318 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2832 5348 8.353684 AGAGATTCCAATAAGTGACTACATACG 58.646 37.037 0.00 0.00 0.00 3.06
2833 5349 8.234136 AGATTCCAATAAGTGACTACATACGA 57.766 34.615 0.00 0.00 0.00 3.43
2835 5351 8.873215 ATTCCAATAAGTGACTACATACGAAG 57.127 34.615 0.00 0.00 0.00 3.79
2837 5353 6.040247 CCAATAAGTGACTACATACGAAGCA 58.960 40.000 0.00 0.00 0.00 3.91
2838 5354 6.533723 CCAATAAGTGACTACATACGAAGCAA 59.466 38.462 0.00 0.00 0.00 3.91
2839 5355 7.064134 CCAATAAGTGACTACATACGAAGCAAA 59.936 37.037 0.00 0.00 0.00 3.68
2840 5356 8.440059 CAATAAGTGACTACATACGAAGCAAAA 58.560 33.333 0.00 0.00 0.00 2.44
2841 5357 8.718102 ATAAGTGACTACATACGAAGCAAAAT 57.282 30.769 0.00 0.00 0.00 1.82
2843 5359 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
2844 5360 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2845 5361 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
2846 5362 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2847 5363 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2848 5364 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2849 5365 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2851 5367 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2853 5369 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2854 5370 5.163953 ACGAAGCAAAATGAGTGAATCTACG 60.164 40.000 0.00 0.00 0.00 3.51
2855 5371 4.606457 AGCAAAATGAGTGAATCTACGC 57.394 40.909 0.00 0.00 0.00 4.42
2856 5372 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
2857 5373 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
2858 5374 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
2859 5375 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
2860 5376 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
2861 5377 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
2862 5378 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
2863 5379 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
2864 5380 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
2865 5381 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
2866 5382 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
2867 5383 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
2868 5384 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
2869 5385 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
2871 5387 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
2872 5388 9.894783 GAATCTACGCTCTAAAATATGTCTACA 57.105 33.333 0.00 0.00 0.00 2.74
2878 5394 9.627395 ACGCTCTAAAATATGTCTACATACATC 57.373 33.333 4.98 0.00 41.15 3.06
2879 5395 9.847706 CGCTCTAAAATATGTCTACATACATCT 57.152 33.333 4.98 0.00 41.15 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.103398 GCCACCCCATCCTTCGAATG 61.103 60.000 0.00 0.00 0.00 2.67
11 12 0.463833 GTTAGCCACCCCATCCTTCG 60.464 60.000 0.00 0.00 0.00 3.79
12 13 0.623723 TGTTAGCCACCCCATCCTTC 59.376 55.000 0.00 0.00 0.00 3.46
140 144 9.940166 AATGAAAAATTGACAAGAAAAATGCTC 57.060 25.926 0.00 0.00 0.00 4.26
171 176 1.150536 GCTGGTCCCACCTGTCAAA 59.849 57.895 2.01 0.00 39.58 2.69
188 193 4.881019 AGTATACATCTCCATGACCAGC 57.119 45.455 5.50 0.00 33.72 4.85
217 222 2.325082 CGGCGGAGGAACAAACTGG 61.325 63.158 0.00 0.00 0.00 4.00
290 299 2.168521 TGCTAATCCTAGTGCACTGACC 59.831 50.000 29.57 8.96 0.00 4.02
302 311 5.479027 TGCATGCAAATATGATGCTAATCCT 59.521 36.000 20.30 0.00 44.14 3.24
372 396 5.069648 TGAAATTGCCAGGTGTTCATTTACA 59.930 36.000 0.00 0.00 0.00 2.41
472 2761 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
473 2762 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
474 2763 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
475 2764 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
476 2765 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
477 2766 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
478 2767 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
479 2768 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
480 2769 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
481 2770 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
482 2771 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
483 2772 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
484 2773 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
485 2774 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
486 2775 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
487 2776 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
488 2777 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
489 2778 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
490 2779 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
491 2780 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
492 2781 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
493 2782 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
494 2783 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
495 2784 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
496 2785 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
497 2786 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
498 2787 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
499 2788 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
500 2789 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
501 2790 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
502 2791 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
503 2792 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
504 2793 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
505 2794 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
506 2795 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
508 2797 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
509 2798 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
545 2834 9.832445 GGAAATCTAGTGGTATACTTTTCATGA 57.168 33.333 2.25 0.00 40.89 3.07
546 2835 9.613428 TGGAAATCTAGTGGTATACTTTTCATG 57.387 33.333 2.25 0.00 40.89 3.07
547 2836 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
548 2837 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
549 2838 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
550 2839 7.548075 CGTGTGGAAATCTAGTGGTATACTTTT 59.452 37.037 2.25 0.00 40.89 2.27
551 2840 7.039882 CGTGTGGAAATCTAGTGGTATACTTT 58.960 38.462 2.25 0.00 40.89 2.66
552 2841 6.406624 CCGTGTGGAAATCTAGTGGTATACTT 60.407 42.308 2.25 0.00 37.99 2.24
553 2842 5.068723 CCGTGTGGAAATCTAGTGGTATACT 59.931 44.000 2.25 0.00 39.66 2.12
554 2843 5.068198 TCCGTGTGGAAATCTAGTGGTATAC 59.932 44.000 0.00 0.00 42.85 1.47
555 2844 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
556 2845 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
557 2846 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
558 2847 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
570 2859 9.706691 ATATATTTAGAAACTACATCCGTGTGG 57.293 33.333 0.00 0.00 42.04 4.17
628 2917 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
629 2918 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
630 2919 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
631 2920 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
632 2921 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
633 2922 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
634 2923 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
635 2924 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
636 2925 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
637 2926 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
638 2927 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
639 2928 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
640 2929 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
641 2930 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
642 2931 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
643 2932 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
644 2933 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
645 2934 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
646 2935 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
647 2936 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
648 2937 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
649 2938 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
650 2939 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
651 2940 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
652 2941 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
653 2942 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
654 2943 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
655 2944 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
656 2945 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
657 2946 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
658 2947 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
659 2948 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
670 2959 4.452733 GTTGAGGCCTCCGTCCCG 62.453 72.222 29.95 0.00 0.00 5.14
671 2960 4.452733 CGTTGAGGCCTCCGTCCC 62.453 72.222 29.95 11.63 0.00 4.46
672 2961 4.452733 CCGTTGAGGCCTCCGTCC 62.453 72.222 29.95 13.38 0.00 4.79
673 2962 1.880819 TAACCGTTGAGGCCTCCGTC 61.881 60.000 29.95 17.78 46.52 4.79
674 2963 1.885163 CTAACCGTTGAGGCCTCCGT 61.885 60.000 29.95 16.95 46.52 4.69
675 2964 1.153628 CTAACCGTTGAGGCCTCCG 60.154 63.158 29.95 24.84 46.52 4.63
676 2965 0.831307 ATCTAACCGTTGAGGCCTCC 59.169 55.000 29.95 14.48 46.52 4.30
677 2966 1.473434 CCATCTAACCGTTGAGGCCTC 60.473 57.143 26.78 26.78 46.52 4.70
705 3079 2.293122 TCACCATTACAGCAAACACAGC 59.707 45.455 0.00 0.00 0.00 4.40
738 3112 6.649141 AGTTCGTCATACAGTAAATTTCTGCA 59.351 34.615 13.98 5.66 36.50 4.41
739 3113 6.955963 CAGTTCGTCATACAGTAAATTTCTGC 59.044 38.462 13.98 0.11 36.50 4.26
740 3114 8.239681 TCAGTTCGTCATACAGTAAATTTCTG 57.760 34.615 13.00 13.00 38.68 3.02
741 3115 8.827177 TTCAGTTCGTCATACAGTAAATTTCT 57.173 30.769 0.00 0.00 0.00 2.52
742 3116 9.690434 GATTCAGTTCGTCATACAGTAAATTTC 57.310 33.333 0.00 0.00 0.00 2.17
758 3132 4.377431 CGGGTTTCTTTCAGATTCAGTTCG 60.377 45.833 0.00 0.00 0.00 3.95
781 3155 3.106407 GTCGTGGAGCGTGCAGTC 61.106 66.667 0.00 0.00 42.13 3.51
1379 3767 1.523524 CCAACGGGGGTTATAGCGT 59.476 57.895 0.00 0.00 0.00 5.07
1381 3769 1.890510 CGCCAACGGGGGTTATAGC 60.891 63.158 0.00 0.00 41.99 2.97
1382 3770 4.449391 CGCCAACGGGGGTTATAG 57.551 61.111 0.00 0.00 41.99 1.31
1518 3912 4.135153 AGCAGCGCGACGATCCTT 62.135 61.111 12.10 0.00 0.00 3.36
1584 3978 1.906824 GGAGTGGAGGACGGTGTCA 60.907 63.158 0.00 0.00 33.68 3.58
1622 4016 5.810080 AATCTATTTAGGAACGGGGAGAG 57.190 43.478 0.00 0.00 0.00 3.20
1623 4017 7.299246 CTAAATCTATTTAGGAACGGGGAGA 57.701 40.000 12.67 0.00 43.33 3.71
1671 4065 9.511272 GGAAGTGAAGTTAATTACTCCCTTTAA 57.489 33.333 0.00 0.00 35.54 1.52
1672 4066 7.820872 CGGAAGTGAAGTTAATTACTCCCTTTA 59.179 37.037 0.00 0.00 35.54 1.85
1673 4067 6.653740 CGGAAGTGAAGTTAATTACTCCCTTT 59.346 38.462 0.00 0.00 35.54 3.11
1674 4068 6.171213 CGGAAGTGAAGTTAATTACTCCCTT 58.829 40.000 0.00 0.00 35.54 3.95
1675 4069 5.338137 CCGGAAGTGAAGTTAATTACTCCCT 60.338 44.000 0.00 0.00 35.54 4.20
1676 4070 4.874396 CCGGAAGTGAAGTTAATTACTCCC 59.126 45.833 0.00 0.00 35.54 4.30
1677 4071 5.727434 TCCGGAAGTGAAGTTAATTACTCC 58.273 41.667 0.00 0.00 35.54 3.85
1678 4072 7.845066 AATCCGGAAGTGAAGTTAATTACTC 57.155 36.000 9.01 0.00 35.54 2.59
1690 4084 3.689161 CAGCACATTTAATCCGGAAGTGA 59.311 43.478 9.01 0.00 0.00 3.41
1693 4087 2.539547 CGCAGCACATTTAATCCGGAAG 60.540 50.000 9.01 0.00 0.00 3.46
1695 4089 1.013596 CGCAGCACATTTAATCCGGA 58.986 50.000 6.61 6.61 0.00 5.14
1746 4144 0.034476 TCAGTGACTGAAGGCTGCTG 59.966 55.000 13.74 0.00 37.57 4.41
2305 4775 4.351192 CAAGCTGGAACTGTGTTTTGTAC 58.649 43.478 0.00 0.00 0.00 2.90
2307 4777 2.166254 CCAAGCTGGAACTGTGTTTTGT 59.834 45.455 0.00 0.00 40.96 2.83
2309 4779 2.733956 TCCAAGCTGGAACTGTGTTTT 58.266 42.857 2.78 0.00 45.00 2.43
2359 4875 4.699637 TCGTTGTGTTCCAGTACAATTCT 58.300 39.130 0.00 0.00 38.84 2.40
2369 4885 1.674359 AGCAACATCGTTGTGTTCCA 58.326 45.000 8.52 0.00 40.17 3.53
2377 4893 6.305399 CGTTATCATCAAAAAGCAACATCGTT 59.695 34.615 0.00 0.00 0.00 3.85
2378 4894 5.794945 CGTTATCATCAAAAAGCAACATCGT 59.205 36.000 0.00 0.00 0.00 3.73
2381 4897 6.266168 TCCGTTATCATCAAAAAGCAACAT 57.734 33.333 0.00 0.00 0.00 2.71
2400 4916 2.198827 TTTGCATCTGGACATTCCGT 57.801 45.000 0.00 0.00 40.17 4.69
2410 4926 2.625737 ACTCCGAGTGATTTGCATCTG 58.374 47.619 0.00 0.00 0.00 2.90
2481 4997 8.154649 TGTTAGGAATCTTTGAGTGACTTTTC 57.845 34.615 0.00 0.00 0.00 2.29
2499 5015 4.219944 ACGAGTGTATTGCTCTTGTTAGGA 59.780 41.667 0.00 0.00 32.94 2.94
2502 5018 4.878439 ACACGAGTGTATTGCTCTTGTTA 58.122 39.130 7.14 0.00 40.86 2.41
2521 5037 5.185635 TGGGTATATATACGGGTTGCTACAC 59.814 44.000 15.15 0.00 34.11 2.90
2534 5050 5.046878 CCAAGCGAGGTGTTGGGTATATATA 60.047 44.000 0.00 0.00 39.76 0.86
2535 5051 4.262894 CCAAGCGAGGTGTTGGGTATATAT 60.263 45.833 0.00 0.00 39.76 0.86
2567 5083 8.821147 AATATATGATACGCACGTTCCTAAAA 57.179 30.769 0.00 0.00 0.00 1.52
2568 5084 9.563898 CTAATATATGATACGCACGTTCCTAAA 57.436 33.333 0.00 0.00 0.00 1.85
2569 5085 8.949177 TCTAATATATGATACGCACGTTCCTAA 58.051 33.333 0.00 0.00 0.00 2.69
2570 5086 8.496707 TCTAATATATGATACGCACGTTCCTA 57.503 34.615 0.00 0.00 0.00 2.94
2571 5087 7.336176 TCTCTAATATATGATACGCACGTTCCT 59.664 37.037 0.00 0.00 0.00 3.36
2572 5088 7.470079 TCTCTAATATATGATACGCACGTTCC 58.530 38.462 0.00 0.00 0.00 3.62
2573 5089 8.891367 TTCTCTAATATATGATACGCACGTTC 57.109 34.615 0.00 0.00 0.00 3.95
2574 5090 9.343103 CTTTCTCTAATATATGATACGCACGTT 57.657 33.333 0.00 0.00 0.00 3.99
2575 5091 8.727910 TCTTTCTCTAATATATGATACGCACGT 58.272 33.333 0.00 0.00 0.00 4.49
2576 5092 9.216087 CTCTTTCTCTAATATATGATACGCACG 57.784 37.037 0.00 0.00 0.00 5.34
2579 5095 9.944663 CCTCTCTTTCTCTAATATATGATACGC 57.055 37.037 0.00 0.00 0.00 4.42
2582 5098 9.944079 CCCCCTCTCTTTCTCTAATATATGATA 57.056 37.037 0.00 0.00 0.00 2.15
2583 5099 8.413821 ACCCCCTCTCTTTCTCTAATATATGAT 58.586 37.037 0.00 0.00 0.00 2.45
2584 5100 7.780822 ACCCCCTCTCTTTCTCTAATATATGA 58.219 38.462 0.00 0.00 0.00 2.15
2585 5101 9.548631 TTACCCCCTCTCTTTCTCTAATATATG 57.451 37.037 0.00 0.00 0.00 1.78
2587 5103 9.603189 CTTTACCCCCTCTCTTTCTCTAATATA 57.397 37.037 0.00 0.00 0.00 0.86
2588 5104 8.297646 TCTTTACCCCCTCTCTTTCTCTAATAT 58.702 37.037 0.00 0.00 0.00 1.28
2589 5105 7.659214 TCTTTACCCCCTCTCTTTCTCTAATA 58.341 38.462 0.00 0.00 0.00 0.98
2590 5106 6.513033 TCTTTACCCCCTCTCTTTCTCTAAT 58.487 40.000 0.00 0.00 0.00 1.73
2591 5107 5.912103 TCTTTACCCCCTCTCTTTCTCTAA 58.088 41.667 0.00 0.00 0.00 2.10
2592 5108 5.520751 CTCTTTACCCCCTCTCTTTCTCTA 58.479 45.833 0.00 0.00 0.00 2.43
2593 5109 4.358214 CTCTTTACCCCCTCTCTTTCTCT 58.642 47.826 0.00 0.00 0.00 3.10
2594 5110 3.118555 GCTCTTTACCCCCTCTCTTTCTC 60.119 52.174 0.00 0.00 0.00 2.87
2595 5111 2.841266 GCTCTTTACCCCCTCTCTTTCT 59.159 50.000 0.00 0.00 0.00 2.52
2596 5112 2.092861 GGCTCTTTACCCCCTCTCTTTC 60.093 54.545 0.00 0.00 0.00 2.62
2597 5113 1.916874 GGCTCTTTACCCCCTCTCTTT 59.083 52.381 0.00 0.00 0.00 2.52
2598 5114 1.585895 GGCTCTTTACCCCCTCTCTT 58.414 55.000 0.00 0.00 0.00 2.85
2599 5115 0.326713 GGGCTCTTTACCCCCTCTCT 60.327 60.000 0.00 0.00 42.01 3.10
2600 5116 2.222885 GGGCTCTTTACCCCCTCTC 58.777 63.158 0.00 0.00 42.01 3.20
2601 5117 4.502106 GGGCTCTTTACCCCCTCT 57.498 61.111 0.00 0.00 42.01 3.69
2607 5123 1.378646 GTGGCAGGGGCTCTTTACC 60.379 63.158 0.00 0.00 40.87 2.85
2608 5124 1.378646 GGTGGCAGGGGCTCTTTAC 60.379 63.158 0.00 0.00 40.87 2.01
2609 5125 1.431195 TTGGTGGCAGGGGCTCTTTA 61.431 55.000 0.00 0.00 40.87 1.85
2610 5126 2.097978 ATTGGTGGCAGGGGCTCTTT 62.098 55.000 0.00 0.00 40.87 2.52
2611 5127 2.551413 ATTGGTGGCAGGGGCTCTT 61.551 57.895 0.00 0.00 40.87 2.85
2612 5128 2.943265 ATTGGTGGCAGGGGCTCT 60.943 61.111 0.00 0.00 40.87 4.09
2613 5129 2.757099 CATTGGTGGCAGGGGCTC 60.757 66.667 0.00 0.00 40.87 4.70
2614 5130 3.590466 GACATTGGTGGCAGGGGCT 62.590 63.158 0.00 0.00 40.87 5.19
2615 5131 3.070576 GACATTGGTGGCAGGGGC 61.071 66.667 0.00 0.00 40.13 5.80
2616 5132 0.331278 TAAGACATTGGTGGCAGGGG 59.669 55.000 0.00 0.00 35.06 4.79
2617 5133 1.271871 TGTAAGACATTGGTGGCAGGG 60.272 52.381 0.00 0.00 35.06 4.45
2618 5134 2.086869 CTGTAAGACATTGGTGGCAGG 58.913 52.381 0.00 0.00 35.06 4.85
2619 5135 2.086869 CCTGTAAGACATTGGTGGCAG 58.913 52.381 0.00 0.00 35.06 4.85
2620 5136 1.886222 GCCTGTAAGACATTGGTGGCA 60.886 52.381 0.00 0.00 38.99 4.92
2621 5137 0.811281 GCCTGTAAGACATTGGTGGC 59.189 55.000 0.00 0.00 34.07 5.01
2622 5138 1.086696 CGCCTGTAAGACATTGGTGG 58.913 55.000 0.00 0.00 34.07 4.61
2623 5139 2.093306 TCGCCTGTAAGACATTGGTG 57.907 50.000 0.00 0.00 34.07 4.17
2624 5140 3.350219 AATCGCCTGTAAGACATTGGT 57.650 42.857 0.00 0.00 34.07 3.67
2625 5141 4.188462 TGTAATCGCCTGTAAGACATTGG 58.812 43.478 0.00 0.00 34.07 3.16
2626 5142 5.727791 GCTTGTAATCGCCTGTAAGACATTG 60.728 44.000 0.00 0.00 34.07 2.82
2627 5143 4.332819 GCTTGTAATCGCCTGTAAGACATT 59.667 41.667 0.00 0.00 34.07 2.71
2628 5144 3.871594 GCTTGTAATCGCCTGTAAGACAT 59.128 43.478 0.00 0.00 34.07 3.06
2629 5145 3.259064 GCTTGTAATCGCCTGTAAGACA 58.741 45.455 0.00 0.00 34.07 3.41
2630 5146 2.608090 GGCTTGTAATCGCCTGTAAGAC 59.392 50.000 0.00 0.00 42.98 3.01
2631 5147 2.737359 CGGCTTGTAATCGCCTGTAAGA 60.737 50.000 0.00 0.00 44.11 2.10
2632 5148 1.593006 CGGCTTGTAATCGCCTGTAAG 59.407 52.381 0.00 0.00 44.11 2.34
2633 5149 1.066716 ACGGCTTGTAATCGCCTGTAA 60.067 47.619 0.00 0.00 44.11 2.41
2634 5150 0.533491 ACGGCTTGTAATCGCCTGTA 59.467 50.000 0.00 0.00 44.11 2.74
2635 5151 1.019278 CACGGCTTGTAATCGCCTGT 61.019 55.000 0.00 0.00 44.11 4.00
2636 5152 0.739462 TCACGGCTTGTAATCGCCTG 60.739 55.000 0.00 0.00 44.11 4.85
2637 5153 0.739813 GTCACGGCTTGTAATCGCCT 60.740 55.000 0.00 0.00 44.11 5.52
2638 5154 0.739813 AGTCACGGCTTGTAATCGCC 60.740 55.000 0.00 0.00 42.86 5.54
2639 5155 0.645868 GAGTCACGGCTTGTAATCGC 59.354 55.000 0.00 0.00 0.00 4.58
2640 5156 1.990799 TGAGTCACGGCTTGTAATCG 58.009 50.000 0.00 0.00 0.00 3.34
2641 5157 2.092211 CGTTGAGTCACGGCTTGTAATC 59.908 50.000 0.00 0.00 36.47 1.75
2642 5158 2.066262 CGTTGAGTCACGGCTTGTAAT 58.934 47.619 0.00 0.00 36.47 1.89
2643 5159 1.493772 CGTTGAGTCACGGCTTGTAA 58.506 50.000 0.00 0.00 36.47 2.41
2644 5160 3.188773 CGTTGAGTCACGGCTTGTA 57.811 52.632 0.00 0.00 36.47 2.41
2645 5161 4.027755 CGTTGAGTCACGGCTTGT 57.972 55.556 0.00 0.00 36.47 3.16
2651 5167 3.041940 GTGGGCCGTTGAGTCACG 61.042 66.667 0.00 0.00 40.02 4.35
2652 5168 2.668550 GGTGGGCCGTTGAGTCAC 60.669 66.667 0.00 0.00 0.00 3.67
2653 5169 2.063015 ATTGGTGGGCCGTTGAGTCA 62.063 55.000 0.00 0.00 37.67 3.41
2654 5170 1.303317 ATTGGTGGGCCGTTGAGTC 60.303 57.895 0.00 0.00 37.67 3.36
2655 5171 1.603455 CATTGGTGGGCCGTTGAGT 60.603 57.895 0.00 0.00 37.67 3.41
2656 5172 1.586154 GACATTGGTGGGCCGTTGAG 61.586 60.000 0.00 0.00 37.67 3.02
2657 5173 1.602323 GACATTGGTGGGCCGTTGA 60.602 57.895 0.00 0.00 37.67 3.18
2658 5174 2.635443 GGACATTGGTGGGCCGTTG 61.635 63.158 0.00 0.00 37.67 4.10
2659 5175 2.282887 GGACATTGGTGGGCCGTT 60.283 61.111 0.00 0.00 37.67 4.44
2660 5176 2.439553 ATTGGACATTGGTGGGCCGT 62.440 55.000 0.00 0.00 37.67 5.68
2661 5177 0.395036 TATTGGACATTGGTGGGCCG 60.395 55.000 0.00 0.00 37.67 6.13
2662 5178 1.402787 CTATTGGACATTGGTGGGCC 58.597 55.000 0.00 0.00 0.00 5.80
2663 5179 0.746659 GCTATTGGACATTGGTGGGC 59.253 55.000 0.00 0.00 0.00 5.36
2664 5180 2.428171 CAAGCTATTGGACATTGGTGGG 59.572 50.000 0.00 0.00 32.43 4.61
2665 5181 3.788333 CAAGCTATTGGACATTGGTGG 57.212 47.619 0.00 0.00 32.43 4.61
2676 5192 5.221126 GCAAATAGAACCCTCCAAGCTATTG 60.221 44.000 0.00 0.00 33.44 1.90
2677 5193 4.889995 GCAAATAGAACCCTCCAAGCTATT 59.110 41.667 0.00 0.00 34.29 1.73
2678 5194 4.079787 TGCAAATAGAACCCTCCAAGCTAT 60.080 41.667 0.00 0.00 0.00 2.97
2679 5195 3.265737 TGCAAATAGAACCCTCCAAGCTA 59.734 43.478 0.00 0.00 0.00 3.32
2680 5196 2.041620 TGCAAATAGAACCCTCCAAGCT 59.958 45.455 0.00 0.00 0.00 3.74
2681 5197 2.164422 GTGCAAATAGAACCCTCCAAGC 59.836 50.000 0.00 0.00 0.00 4.01
2682 5198 3.420893 TGTGCAAATAGAACCCTCCAAG 58.579 45.455 0.00 0.00 0.00 3.61
2683 5199 3.517296 TGTGCAAATAGAACCCTCCAA 57.483 42.857 0.00 0.00 0.00 3.53
2684 5200 3.153919 GTTGTGCAAATAGAACCCTCCA 58.846 45.455 0.00 0.00 0.00 3.86
2685 5201 3.057526 GTGTTGTGCAAATAGAACCCTCC 60.058 47.826 0.00 0.00 0.00 4.30
2686 5202 3.364964 CGTGTTGTGCAAATAGAACCCTC 60.365 47.826 0.00 0.00 0.00 4.30
2687 5203 2.552315 CGTGTTGTGCAAATAGAACCCT 59.448 45.455 0.00 0.00 0.00 4.34
2688 5204 2.920647 GCGTGTTGTGCAAATAGAACCC 60.921 50.000 0.00 0.00 0.00 4.11
2689 5205 2.287308 TGCGTGTTGTGCAAATAGAACC 60.287 45.455 0.00 0.00 39.87 3.62
2690 5206 2.993545 TGCGTGTTGTGCAAATAGAAC 58.006 42.857 0.00 0.00 39.87 3.01
2710 5226 8.859090 CCAGATCATCTAGAGAGTTAGTCAATT 58.141 37.037 0.00 0.00 0.00 2.32
2721 5237 4.044444 AGAGCATCCCAGATCATCTAGAGA 59.956 45.833 0.00 0.00 33.66 3.10
2776 5292 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2777 5293 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2778 5294 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2807 5323 8.350722 TCGTATGTAGTCACTTATTGGAATCTC 58.649 37.037 0.00 0.00 0.00 2.75
2808 5324 8.234136 TCGTATGTAGTCACTTATTGGAATCT 57.766 34.615 0.00 0.00 0.00 2.40
2811 5327 6.755141 GCTTCGTATGTAGTCACTTATTGGAA 59.245 38.462 0.00 0.00 0.00 3.53
2813 5329 6.040247 TGCTTCGTATGTAGTCACTTATTGG 58.960 40.000 0.00 0.00 0.00 3.16
2814 5330 7.520119 TTGCTTCGTATGTAGTCACTTATTG 57.480 36.000 0.00 0.00 0.00 1.90
2815 5331 8.542497 TTTTGCTTCGTATGTAGTCACTTATT 57.458 30.769 0.00 0.00 0.00 1.40
2816 5332 8.604035 CATTTTGCTTCGTATGTAGTCACTTAT 58.396 33.333 0.00 0.00 0.00 1.73
2817 5333 7.815549 TCATTTTGCTTCGTATGTAGTCACTTA 59.184 33.333 0.00 0.00 0.00 2.24
2818 5334 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
2819 5335 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
2821 5337 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2822 5338 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2823 5339 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2824 5340 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2826 5342 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2827 5343 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
2829 5345 6.034577 CGTAGATTCACTCATTTTGCTTCGTA 59.965 38.462 0.00 0.00 0.00 3.43
2830 5346 5.163953 CGTAGATTCACTCATTTTGCTTCGT 60.164 40.000 0.00 0.00 0.00 3.85
2831 5347 5.251081 CGTAGATTCACTCATTTTGCTTCG 58.749 41.667 0.00 0.00 0.00 3.79
2832 5348 5.024555 GCGTAGATTCACTCATTTTGCTTC 58.975 41.667 0.00 0.00 0.00 3.86
2833 5349 4.697352 AGCGTAGATTCACTCATTTTGCTT 59.303 37.500 0.00 0.00 0.00 3.91
2835 5351 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
2837 5353 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
2838 5354 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
2839 5355 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
2840 5356 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
2841 5357 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
2843 5359 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
2844 5360 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
2845 5361 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
2846 5362 9.894783 TGTAGACATATTTTAGAGCGTAGATTC 57.105 33.333 0.00 0.00 0.00 2.52
2853 5369 9.847706 AGATGTATGTAGACATATTTTAGAGCG 57.152 33.333 5.69 0.00 40.18 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.