Multiple sequence alignment - TraesCS2B01G141500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G141500 chr2B 100.000 3663 0 0 1 3663 107903342 107907004 0.000000e+00 6765
1 TraesCS2B01G141500 chr2D 89.890 3175 190 74 576 3663 71621163 71624293 0.000000e+00 3964
2 TraesCS2B01G141500 chr2A 93.733 1468 86 4 1950 3412 70675138 70676604 0.000000e+00 2196
3 TraesCS2B01G141500 chr2A 88.926 1183 59 37 576 1700 70673800 70674968 0.000000e+00 1393
4 TraesCS2B01G141500 chr2A 83.288 371 27 11 1 353 569188777 569189130 3.550000e-80 309
5 TraesCS2B01G141500 chr4A 90.272 699 68 0 1950 2648 559486897 559486199 0.000000e+00 915
6 TraesCS2B01G141500 chr4A 88.493 617 69 2 1029 1645 559487822 559487208 0.000000e+00 745
7 TraesCS2B01G141500 chr4A 77.219 338 31 21 595 900 559488375 559488052 4.900000e-34 156
8 TraesCS2B01G141500 chr4D 90.129 699 69 0 1950 2648 40402006 40402704 0.000000e+00 909
9 TraesCS2B01G141500 chr4D 88.169 617 71 2 1029 1645 40401115 40401729 0.000000e+00 734
10 TraesCS2B01G141500 chr4D 86.466 133 14 2 769 900 40400749 40400878 3.810000e-30 143
11 TraesCS2B01G141500 chr4B 86.436 811 97 10 1846 2648 58956336 58957141 0.000000e+00 876
12 TraesCS2B01G141500 chr4B 89.351 601 64 0 1029 1629 58955462 58956062 0.000000e+00 756
13 TraesCS2B01G141500 chr4B 84.418 507 55 9 1 493 423343493 423342997 9.200000e-131 477
14 TraesCS2B01G141500 chr4B 82.574 505 65 8 2 493 431584513 431584019 1.220000e-114 424
15 TraesCS2B01G141500 chr4B 77.607 326 31 17 595 889 58954902 58955216 3.790000e-35 159
16 TraesCS2B01G141500 chr4B 77.108 332 34 17 595 895 58976813 58976493 1.760000e-33 154
17 TraesCS2B01G141500 chr7B 87.415 588 66 6 1050 1630 507141176 507140590 0.000000e+00 669
18 TraesCS2B01G141500 chr7B 83.757 511 56 12 4 493 678968474 678967970 3.330000e-125 459
19 TraesCS2B01G141500 chr7B 82.819 518 57 11 1 493 7176783 7177293 5.620000e-118 435
20 TraesCS2B01G141500 chr7D 87.245 588 67 6 1050 1630 481697562 481696976 0.000000e+00 664
21 TraesCS2B01G141500 chr7D 85.039 508 51 9 1 493 426178348 426177851 9.140000e-136 494
22 TraesCS2B01G141500 chr7D 84.180 512 61 5 2 501 520339771 520339268 2.560000e-131 479
23 TraesCS2B01G141500 chr7D 84.418 507 51 9 1 493 153535728 153536220 1.190000e-129 473
24 TraesCS2B01G141500 chr7A 86.735 588 70 6 1050 1630 548585886 548585300 0.000000e+00 647
25 TraesCS2B01G141500 chr7A 81.113 503 71 14 1 494 442590540 442591027 7.420000e-102 381
26 TraesCS2B01G141500 chr3A 86.294 591 72 6 1049 1630 671732039 671732629 5.160000e-178 634
27 TraesCS2B01G141500 chr5D 85.631 515 51 8 1 502 323791954 323792458 1.510000e-143 520
28 TraesCS2B01G141500 chr3D 85.545 505 50 7 1 492 6297513 6298007 1.170000e-139 507
29 TraesCS2B01G141500 chr6D 85.039 508 52 9 1 493 465946729 465946231 2.540000e-136 496
30 TraesCS2B01G141500 chr5B 83.903 497 59 11 1 488 491947847 491948331 4.310000e-124 455
31 TraesCS2B01G141500 chr5B 84.823 481 42 8 40 497 496290528 496291000 4.310000e-124 455
32 TraesCS2B01G141500 chr5B 79.961 509 68 19 1 500 584856846 584856363 9.740000e-91 344
33 TraesCS2B01G141500 chr3B 83.562 511 53 18 1 497 199223464 199222971 2.010000e-122 449
34 TraesCS2B01G141500 chr3B 82.101 514 52 10 1 502 579171762 579172247 1.580000e-108 403
35 TraesCS2B01G141500 chr3B 86.919 344 37 2 151 493 610747599 610747935 2.670000e-101 379
36 TraesCS2B01G141500 chr1D 84.040 401 42 7 2 389 32761056 32760665 2.080000e-97 366


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G141500 chr2B 107903342 107907004 3662 False 6765.000000 6765 100.000000 1 3663 1 chr2B.!!$F1 3662
1 TraesCS2B01G141500 chr2D 71621163 71624293 3130 False 3964.000000 3964 89.890000 576 3663 1 chr2D.!!$F1 3087
2 TraesCS2B01G141500 chr2A 70673800 70676604 2804 False 1794.500000 2196 91.329500 576 3412 2 chr2A.!!$F2 2836
3 TraesCS2B01G141500 chr4A 559486199 559488375 2176 True 605.333333 915 85.328000 595 2648 3 chr4A.!!$R1 2053
4 TraesCS2B01G141500 chr4D 40400749 40402704 1955 False 595.333333 909 88.254667 769 2648 3 chr4D.!!$F1 1879
5 TraesCS2B01G141500 chr4B 58954902 58957141 2239 False 597.000000 876 84.464667 595 2648 3 chr4B.!!$F1 2053
6 TraesCS2B01G141500 chr7B 507140590 507141176 586 True 669.000000 669 87.415000 1050 1630 1 chr7B.!!$R1 580
7 TraesCS2B01G141500 chr7B 678967970 678968474 504 True 459.000000 459 83.757000 4 493 1 chr7B.!!$R2 489
8 TraesCS2B01G141500 chr7B 7176783 7177293 510 False 435.000000 435 82.819000 1 493 1 chr7B.!!$F1 492
9 TraesCS2B01G141500 chr7D 481696976 481697562 586 True 664.000000 664 87.245000 1050 1630 1 chr7D.!!$R2 580
10 TraesCS2B01G141500 chr7D 520339268 520339771 503 True 479.000000 479 84.180000 2 501 1 chr7D.!!$R3 499
11 TraesCS2B01G141500 chr7A 548585300 548585886 586 True 647.000000 647 86.735000 1050 1630 1 chr7A.!!$R1 580
12 TraesCS2B01G141500 chr3A 671732039 671732629 590 False 634.000000 634 86.294000 1049 1630 1 chr3A.!!$F1 581
13 TraesCS2B01G141500 chr5D 323791954 323792458 504 False 520.000000 520 85.631000 1 502 1 chr5D.!!$F1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.031585 CGGCCTTTACGGATCGATGA 59.968 55.0 0.54 0.0 34.37 2.92 F
546 547 0.038166 CTGCTACCCCTTCTGCCAAA 59.962 55.0 0.00 0.0 0.00 3.28 F
2200 2817 0.179094 ACGTGCACTTCGAACAAGGA 60.179 50.0 16.19 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 2691 0.107831 CTTTCCGGTCTTGGTGGTCA 59.892 55.0 0.00 0.0 0.0 4.02 R
2218 2835 0.892755 TGCATTCGTCGACCCTAACT 59.107 50.0 10.58 0.0 0.0 2.24 R
3167 3786 0.599558 CGGAAACTCGGGTCACAGTA 59.400 55.0 0.00 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.453892 GCATTGGCCAGCCCTCCT 62.454 66.667 5.11 0.00 34.56 3.69
23 24 2.441532 CATTGGCCAGCCCTCCTG 60.442 66.667 5.11 0.00 41.41 3.86
30 31 4.087892 CAGCCCTCCTGGTGGACG 62.088 72.222 16.24 1.75 37.46 4.79
34 35 3.636231 CCTCCTGGTGGACGGCAA 61.636 66.667 9.20 0.00 37.46 4.52
35 36 2.358737 CTCCTGGTGGACGGCAAC 60.359 66.667 0.00 0.00 37.46 4.17
36 37 3.164977 TCCTGGTGGACGGCAACA 61.165 61.111 0.00 0.00 37.46 3.33
37 38 2.669569 CCTGGTGGACGGCAACAG 60.670 66.667 0.00 0.00 34.57 3.16
38 39 2.425592 CTGGTGGACGGCAACAGA 59.574 61.111 0.00 0.00 0.00 3.41
39 40 1.003355 CTGGTGGACGGCAACAGAT 60.003 57.895 0.00 0.00 0.00 2.90
40 41 1.300971 CTGGTGGACGGCAACAGATG 61.301 60.000 0.00 0.00 0.00 2.90
41 42 2.040544 GGTGGACGGCAACAGATGG 61.041 63.158 0.00 0.00 0.00 3.51
42 43 2.040544 GTGGACGGCAACAGATGGG 61.041 63.158 0.00 0.00 0.00 4.00
43 44 2.438434 GGACGGCAACAGATGGGG 60.438 66.667 0.00 0.00 0.00 4.96
44 45 2.438434 GACGGCAACAGATGGGGG 60.438 66.667 0.00 0.00 0.00 5.40
45 46 2.933287 ACGGCAACAGATGGGGGA 60.933 61.111 0.00 0.00 0.00 4.81
46 47 2.354729 CGGCAACAGATGGGGGAA 59.645 61.111 0.00 0.00 0.00 3.97
47 48 1.750399 CGGCAACAGATGGGGGAAG 60.750 63.158 0.00 0.00 0.00 3.46
48 49 1.691219 GGCAACAGATGGGGGAAGA 59.309 57.895 0.00 0.00 0.00 2.87
49 50 0.681243 GGCAACAGATGGGGGAAGAC 60.681 60.000 0.00 0.00 0.00 3.01
50 51 1.026718 GCAACAGATGGGGGAAGACG 61.027 60.000 0.00 0.00 0.00 4.18
51 52 1.026718 CAACAGATGGGGGAAGACGC 61.027 60.000 0.00 0.00 0.00 5.19
52 53 1.201429 AACAGATGGGGGAAGACGCT 61.201 55.000 0.00 0.00 0.00 5.07
53 54 1.144936 CAGATGGGGGAAGACGCTC 59.855 63.158 0.00 0.00 0.00 5.03
54 55 2.107141 GATGGGGGAAGACGCTCG 59.893 66.667 0.00 0.00 31.75 5.03
55 56 4.162690 ATGGGGGAAGACGCTCGC 62.163 66.667 0.00 0.00 31.75 5.03
57 58 4.162690 GGGGGAAGACGCTCGCAT 62.163 66.667 0.00 0.00 0.00 4.73
58 59 2.586357 GGGGAAGACGCTCGCATC 60.586 66.667 0.00 0.00 0.00 3.91
59 60 2.184322 GGGAAGACGCTCGCATCA 59.816 61.111 0.00 0.00 0.00 3.07
60 61 2.167861 GGGAAGACGCTCGCATCAC 61.168 63.158 0.00 0.00 0.00 3.06
61 62 2.167861 GGAAGACGCTCGCATCACC 61.168 63.158 0.00 0.00 0.00 4.02
62 63 2.507102 AAGACGCTCGCATCACCG 60.507 61.111 0.00 0.00 0.00 4.94
63 64 2.867333 GAAGACGCTCGCATCACCGA 62.867 60.000 0.00 0.00 35.68 4.69
64 65 3.248171 GACGCTCGCATCACCGAC 61.248 66.667 0.00 0.00 33.12 4.79
68 69 4.794439 CTCGCATCACCGACGCCA 62.794 66.667 0.00 0.00 33.12 5.69
69 70 4.794439 TCGCATCACCGACGCCAG 62.794 66.667 0.00 0.00 31.36 4.85
71 72 4.760047 GCATCACCGACGCCAGGT 62.760 66.667 0.00 0.00 43.97 4.00
72 73 2.509336 CATCACCGACGCCAGGTC 60.509 66.667 0.00 0.00 40.59 3.85
73 74 3.771160 ATCACCGACGCCAGGTCC 61.771 66.667 0.00 0.00 42.99 4.46
84 85 3.322466 CAGGTCCCTGCCCGAGTT 61.322 66.667 0.00 0.00 37.24 3.01
85 86 3.003763 AGGTCCCTGCCCGAGTTC 61.004 66.667 0.00 0.00 0.00 3.01
86 87 3.003763 GGTCCCTGCCCGAGTTCT 61.004 66.667 0.00 0.00 0.00 3.01
87 88 1.684734 GGTCCCTGCCCGAGTTCTA 60.685 63.158 0.00 0.00 0.00 2.10
88 89 1.677637 GGTCCCTGCCCGAGTTCTAG 61.678 65.000 0.00 0.00 0.00 2.43
89 90 0.683504 GTCCCTGCCCGAGTTCTAGA 60.684 60.000 0.00 0.00 0.00 2.43
90 91 0.395862 TCCCTGCCCGAGTTCTAGAG 60.396 60.000 0.00 0.00 0.00 2.43
91 92 1.439644 CCTGCCCGAGTTCTAGAGC 59.560 63.158 0.00 0.00 0.00 4.09
92 93 1.439644 CTGCCCGAGTTCTAGAGCC 59.560 63.158 2.55 0.00 0.00 4.70
93 94 2.022240 CTGCCCGAGTTCTAGAGCCC 62.022 65.000 2.55 0.00 0.00 5.19
94 95 3.121019 CCCGAGTTCTAGAGCCCG 58.879 66.667 3.47 3.47 0.00 6.13
95 96 2.491022 CCCGAGTTCTAGAGCCCGG 61.491 68.421 20.39 20.39 36.98 5.73
96 97 2.413765 CGAGTTCTAGAGCCCGGC 59.586 66.667 0.00 0.00 0.00 6.13
97 98 2.816012 GAGTTCTAGAGCCCGGCC 59.184 66.667 5.55 0.00 0.00 6.13
98 99 2.038975 AGTTCTAGAGCCCGGCCA 59.961 61.111 5.55 0.00 0.00 5.36
99 100 2.022240 GAGTTCTAGAGCCCGGCCAG 62.022 65.000 5.55 1.09 0.00 4.85
100 101 3.470888 TTCTAGAGCCCGGCCAGC 61.471 66.667 5.55 4.79 0.00 4.85
118 119 4.220413 CAGTGCTCCTGGATGCTG 57.780 61.111 15.75 11.73 37.54 4.41
119 120 1.451567 CAGTGCTCCTGGATGCTGG 60.452 63.158 15.75 3.55 37.54 4.85
120 121 2.827642 GTGCTCCTGGATGCTGGC 60.828 66.667 15.75 8.38 0.00 4.85
121 122 4.478371 TGCTCCTGGATGCTGGCG 62.478 66.667 15.75 0.16 0.00 5.69
122 123 4.166888 GCTCCTGGATGCTGGCGA 62.167 66.667 5.18 0.00 0.00 5.54
123 124 2.827423 CTCCTGGATGCTGGCGAT 59.173 61.111 5.18 0.00 0.00 4.58
124 125 1.597302 CTCCTGGATGCTGGCGATG 60.597 63.158 5.18 0.00 0.00 3.84
125 126 3.285215 CCTGGATGCTGGCGATGC 61.285 66.667 0.00 0.00 0.00 3.91
126 127 3.646976 CTGGATGCTGGCGATGCG 61.647 66.667 0.00 0.00 0.00 4.73
144 145 3.760035 CTGGTCGACGGGGGTCAG 61.760 72.222 9.92 6.17 0.00 3.51
145 146 4.289101 TGGTCGACGGGGGTCAGA 62.289 66.667 9.92 0.00 0.00 3.27
146 147 3.450115 GGTCGACGGGGGTCAGAG 61.450 72.222 9.92 0.00 0.00 3.35
147 148 3.450115 GTCGACGGGGGTCAGAGG 61.450 72.222 0.00 0.00 0.00 3.69
148 149 3.654143 TCGACGGGGGTCAGAGGA 61.654 66.667 0.00 0.00 0.00 3.71
149 150 2.442272 CGACGGGGGTCAGAGGAT 60.442 66.667 0.00 0.00 0.00 3.24
150 151 2.786495 CGACGGGGGTCAGAGGATG 61.786 68.421 0.00 0.00 0.00 3.51
151 152 2.365635 ACGGGGGTCAGAGGATGG 60.366 66.667 0.00 0.00 0.00 3.51
152 153 3.866582 CGGGGGTCAGAGGATGGC 61.867 72.222 0.00 0.00 0.00 4.40
153 154 3.866582 GGGGGTCAGAGGATGGCG 61.867 72.222 0.00 0.00 32.79 5.69
154 155 4.554036 GGGGTCAGAGGATGGCGC 62.554 72.222 0.00 0.00 45.30 6.53
155 156 4.899239 GGGTCAGAGGATGGCGCG 62.899 72.222 0.00 0.00 36.67 6.86
156 157 4.899239 GGTCAGAGGATGGCGCGG 62.899 72.222 8.83 0.00 32.79 6.46
174 175 2.519541 CGGAGCCATCGGAGGAGA 60.520 66.667 0.00 0.00 0.00 3.71
175 176 2.560119 CGGAGCCATCGGAGGAGAG 61.560 68.421 0.00 0.00 0.00 3.20
176 177 2.206536 GGAGCCATCGGAGGAGAGG 61.207 68.421 0.00 0.00 0.00 3.69
177 178 1.152652 GAGCCATCGGAGGAGAGGA 60.153 63.158 0.00 0.00 0.00 3.71
178 179 1.152567 AGCCATCGGAGGAGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
179 180 1.152652 GCCATCGGAGGAGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
180 181 1.178534 GCCATCGGAGGAGAGGAGAG 61.179 65.000 0.00 0.00 0.00 3.20
181 182 0.539438 CCATCGGAGGAGAGGAGAGG 60.539 65.000 0.00 0.00 0.00 3.69
182 183 0.539438 CATCGGAGGAGAGGAGAGGG 60.539 65.000 0.00 0.00 0.00 4.30
183 184 0.699577 ATCGGAGGAGAGGAGAGGGA 60.700 60.000 0.00 0.00 0.00 4.20
184 185 1.150536 CGGAGGAGAGGAGAGGGAG 59.849 68.421 0.00 0.00 0.00 4.30
185 186 1.349542 CGGAGGAGAGGAGAGGGAGA 61.350 65.000 0.00 0.00 0.00 3.71
186 187 0.478507 GGAGGAGAGGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
187 188 1.518367 GAGGAGAGGAGAGGGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
188 189 1.143073 GAGGAGAGGAGAGGGAGAGAC 59.857 61.905 0.00 0.00 0.00 3.36
189 190 0.179029 GGAGAGGAGAGGGAGAGACG 60.179 65.000 0.00 0.00 0.00 4.18
190 191 0.179029 GAGAGGAGAGGGAGAGACGG 60.179 65.000 0.00 0.00 0.00 4.79
191 192 0.917333 AGAGGAGAGGGAGAGACGGT 60.917 60.000 0.00 0.00 0.00 4.83
192 193 0.750182 GAGGAGAGGGAGAGACGGTG 60.750 65.000 0.00 0.00 0.00 4.94
193 194 1.208844 AGGAGAGGGAGAGACGGTGA 61.209 60.000 0.00 0.00 0.00 4.02
194 195 0.750182 GGAGAGGGAGAGACGGTGAG 60.750 65.000 0.00 0.00 0.00 3.51
195 196 0.750182 GAGAGGGAGAGACGGTGAGG 60.750 65.000 0.00 0.00 0.00 3.86
196 197 2.363147 AGGGAGAGACGGTGAGGC 60.363 66.667 0.00 0.00 0.00 4.70
197 198 2.680352 GGGAGAGACGGTGAGGCA 60.680 66.667 0.00 0.00 0.00 4.75
198 199 2.716017 GGGAGAGACGGTGAGGCAG 61.716 68.421 0.00 0.00 0.00 4.85
199 200 1.679305 GGAGAGACGGTGAGGCAGA 60.679 63.158 0.00 0.00 0.00 4.26
200 201 1.662438 GGAGAGACGGTGAGGCAGAG 61.662 65.000 0.00 0.00 0.00 3.35
201 202 0.678366 GAGAGACGGTGAGGCAGAGA 60.678 60.000 0.00 0.00 0.00 3.10
202 203 0.679640 AGAGACGGTGAGGCAGAGAG 60.680 60.000 0.00 0.00 0.00 3.20
203 204 1.662438 GAGACGGTGAGGCAGAGAGG 61.662 65.000 0.00 0.00 0.00 3.69
204 205 2.681778 ACGGTGAGGCAGAGAGGG 60.682 66.667 0.00 0.00 0.00 4.30
205 206 2.363018 CGGTGAGGCAGAGAGGGA 60.363 66.667 0.00 0.00 0.00 4.20
206 207 2.422231 CGGTGAGGCAGAGAGGGAG 61.422 68.421 0.00 0.00 0.00 4.30
207 208 2.730524 GGTGAGGCAGAGAGGGAGC 61.731 68.421 0.00 0.00 0.00 4.70
208 209 2.757508 TGAGGCAGAGAGGGAGCG 60.758 66.667 0.00 0.00 0.00 5.03
209 210 3.535962 GAGGCAGAGAGGGAGCGG 61.536 72.222 0.00 0.00 0.00 5.52
210 211 4.390556 AGGCAGAGAGGGAGCGGT 62.391 66.667 0.00 0.00 0.00 5.68
211 212 4.154347 GGCAGAGAGGGAGCGGTG 62.154 72.222 0.00 0.00 0.00 4.94
212 213 4.154347 GCAGAGAGGGAGCGGTGG 62.154 72.222 0.00 0.00 0.00 4.61
213 214 3.465403 CAGAGAGGGAGCGGTGGG 61.465 72.222 0.00 0.00 0.00 4.61
214 215 3.673597 AGAGAGGGAGCGGTGGGA 61.674 66.667 0.00 0.00 0.00 4.37
215 216 2.683933 GAGAGGGAGCGGTGGGAA 60.684 66.667 0.00 0.00 0.00 3.97
216 217 3.003763 AGAGGGAGCGGTGGGAAC 61.004 66.667 0.00 0.00 0.00 3.62
217 218 3.319198 GAGGGAGCGGTGGGAACA 61.319 66.667 0.00 0.00 38.70 3.18
218 219 3.316573 GAGGGAGCGGTGGGAACAG 62.317 68.421 0.00 0.00 44.46 3.16
219 220 3.637273 GGGAGCGGTGGGAACAGT 61.637 66.667 0.00 0.00 44.46 3.55
220 221 2.358737 GGAGCGGTGGGAACAGTG 60.359 66.667 0.00 0.00 44.46 3.66
221 222 3.050275 GAGCGGTGGGAACAGTGC 61.050 66.667 0.00 0.00 44.46 4.40
222 223 4.988598 AGCGGTGGGAACAGTGCG 62.989 66.667 0.00 0.00 44.19 5.34
226 227 4.643387 GTGGGAACAGTGCGGGCT 62.643 66.667 0.00 0.00 44.46 5.19
227 228 4.641645 TGGGAACAGTGCGGGCTG 62.642 66.667 0.00 0.00 41.92 4.85
239 240 4.864334 GGGCTGGGCGATGACAGG 62.864 72.222 0.00 0.00 35.30 4.00
240 241 3.785859 GGCTGGGCGATGACAGGA 61.786 66.667 0.00 0.00 35.30 3.86
241 242 2.202987 GCTGGGCGATGACAGGAG 60.203 66.667 0.00 0.00 35.30 3.69
242 243 2.725312 GCTGGGCGATGACAGGAGA 61.725 63.158 0.00 0.00 35.30 3.71
243 244 1.440893 CTGGGCGATGACAGGAGAG 59.559 63.158 0.00 0.00 0.00 3.20
244 245 1.305297 TGGGCGATGACAGGAGAGT 60.305 57.895 0.00 0.00 0.00 3.24
245 246 1.142748 GGGCGATGACAGGAGAGTG 59.857 63.158 0.00 0.00 0.00 3.51
246 247 1.142748 GGCGATGACAGGAGAGTGG 59.857 63.158 0.00 0.00 0.00 4.00
247 248 1.142748 GCGATGACAGGAGAGTGGG 59.857 63.158 0.00 0.00 0.00 4.61
248 249 1.819229 CGATGACAGGAGAGTGGGG 59.181 63.158 0.00 0.00 0.00 4.96
249 250 1.680522 CGATGACAGGAGAGTGGGGG 61.681 65.000 0.00 0.00 0.00 5.40
264 265 4.040198 GGGGAGGGAGGGGGAGTT 62.040 72.222 0.00 0.00 0.00 3.01
265 266 2.654204 GGGGAGGGAGGGGGAGTTA 61.654 68.421 0.00 0.00 0.00 2.24
266 267 1.638542 GGGAGGGAGGGGGAGTTAT 59.361 63.158 0.00 0.00 0.00 1.89
267 268 0.768609 GGGAGGGAGGGGGAGTTATG 60.769 65.000 0.00 0.00 0.00 1.90
268 269 0.267960 GGAGGGAGGGGGAGTTATGA 59.732 60.000 0.00 0.00 0.00 2.15
269 270 1.723288 GAGGGAGGGGGAGTTATGAG 58.277 60.000 0.00 0.00 0.00 2.90
270 271 0.400670 AGGGAGGGGGAGTTATGAGC 60.401 60.000 0.00 0.00 0.00 4.26
271 272 1.419720 GGGAGGGGGAGTTATGAGCC 61.420 65.000 0.00 0.00 0.00 4.70
272 273 1.749033 GAGGGGGAGTTATGAGCCG 59.251 63.158 0.00 0.00 0.00 5.52
273 274 1.003051 AGGGGGAGTTATGAGCCGT 59.997 57.895 0.00 0.00 0.00 5.68
274 275 1.049289 AGGGGGAGTTATGAGCCGTC 61.049 60.000 0.00 0.00 0.00 4.79
275 276 1.067582 GGGGAGTTATGAGCCGTCG 59.932 63.158 0.00 0.00 0.00 5.12
276 277 1.591863 GGGAGTTATGAGCCGTCGC 60.592 63.158 0.00 0.00 0.00 5.19
277 278 1.944676 GGAGTTATGAGCCGTCGCG 60.945 63.158 0.00 0.00 41.18 5.87
278 279 1.226603 GAGTTATGAGCCGTCGCGT 60.227 57.895 5.77 0.00 41.18 6.01
279 280 1.201098 GAGTTATGAGCCGTCGCGTC 61.201 60.000 5.77 0.00 41.18 5.19
280 281 2.103538 TTATGAGCCGTCGCGTCC 59.896 61.111 5.77 0.00 41.18 4.79
281 282 3.744749 TTATGAGCCGTCGCGTCCG 62.745 63.158 5.77 10.10 41.18 4.79
348 349 2.973899 GAGCCAGGCTCGTGAGAA 59.026 61.111 26.09 0.00 45.85 2.87
349 350 1.293498 GAGCCAGGCTCGTGAGAAA 59.707 57.895 26.09 0.00 45.85 2.52
350 351 1.004440 AGCCAGGCTCGTGAGAAAC 60.004 57.895 8.70 0.00 41.32 2.78
351 352 1.004440 GCCAGGCTCGTGAGAAACT 60.004 57.895 3.29 0.00 41.32 2.66
352 353 1.294659 GCCAGGCTCGTGAGAAACTG 61.295 60.000 3.29 5.54 41.13 3.16
353 354 1.294659 CCAGGCTCGTGAGAAACTGC 61.295 60.000 0.00 0.00 40.52 4.40
354 355 1.004440 AGGCTCGTGAGAAACTGCC 60.004 57.895 0.00 0.00 42.72 4.85
355 356 2.383527 GGCTCGTGAGAAACTGCCG 61.384 63.158 0.00 0.00 41.32 5.69
356 357 1.372997 GCTCGTGAGAAACTGCCGA 60.373 57.895 0.00 0.00 41.32 5.54
357 358 0.737715 GCTCGTGAGAAACTGCCGAT 60.738 55.000 0.00 0.00 41.32 4.18
358 359 1.714794 CTCGTGAGAAACTGCCGATT 58.285 50.000 0.00 0.00 41.32 3.34
359 360 1.656095 CTCGTGAGAAACTGCCGATTC 59.344 52.381 0.00 0.00 41.32 2.52
360 361 1.272490 TCGTGAGAAACTGCCGATTCT 59.728 47.619 0.22 0.22 38.56 2.40
361 362 1.391485 CGTGAGAAACTGCCGATTCTG 59.609 52.381 5.39 0.00 36.08 3.02
362 363 1.129437 GTGAGAAACTGCCGATTCTGC 59.871 52.381 5.39 0.00 36.08 4.26
363 364 1.270785 TGAGAAACTGCCGATTCTGCA 60.271 47.619 5.39 2.68 36.08 4.41
369 370 2.555123 TGCCGATTCTGCAGTTTCC 58.445 52.632 14.67 1.04 34.05 3.13
370 371 1.298157 TGCCGATTCTGCAGTTTCCG 61.298 55.000 14.67 12.65 34.05 4.30
371 372 1.425428 CCGATTCTGCAGTTTCCGC 59.575 57.895 14.67 0.00 0.00 5.54
372 373 1.021390 CCGATTCTGCAGTTTCCGCT 61.021 55.000 14.67 0.00 0.00 5.52
373 374 0.095935 CGATTCTGCAGTTTCCGCTG 59.904 55.000 14.67 0.00 39.37 5.18
374 375 0.449388 GATTCTGCAGTTTCCGCTGG 59.551 55.000 14.67 0.00 37.00 4.85
375 376 0.962356 ATTCTGCAGTTTCCGCTGGG 60.962 55.000 14.67 0.00 37.00 4.45
376 377 3.741476 CTGCAGTTTCCGCTGGGC 61.741 66.667 5.25 0.00 37.00 5.36
379 380 3.058160 CAGTTTCCGCTGGGCCAG 61.058 66.667 29.44 29.44 33.11 4.85
380 381 4.351054 AGTTTCCGCTGGGCCAGG 62.351 66.667 33.43 22.61 31.21 4.45
397 398 3.502572 GCTCCGGCCTGCTTTAAG 58.497 61.111 0.00 0.00 0.00 1.85
398 399 1.377333 GCTCCGGCCTGCTTTAAGT 60.377 57.895 0.00 0.00 0.00 2.24
399 400 0.960861 GCTCCGGCCTGCTTTAAGTT 60.961 55.000 0.00 0.00 0.00 2.66
400 401 1.534729 CTCCGGCCTGCTTTAAGTTT 58.465 50.000 0.00 0.00 0.00 2.66
401 402 1.468914 CTCCGGCCTGCTTTAAGTTTC 59.531 52.381 0.00 0.00 0.00 2.78
402 403 0.168128 CCGGCCTGCTTTAAGTTTCG 59.832 55.000 0.00 0.00 0.00 3.46
403 404 0.872388 CGGCCTGCTTTAAGTTTCGT 59.128 50.000 0.00 0.00 0.00 3.85
404 405 1.399727 CGGCCTGCTTTAAGTTTCGTG 60.400 52.381 0.00 0.00 0.00 4.35
405 406 1.666023 GGCCTGCTTTAAGTTTCGTGC 60.666 52.381 0.00 0.00 0.00 5.34
406 407 1.001815 GCCTGCTTTAAGTTTCGTGCA 60.002 47.619 0.00 0.00 0.00 4.57
407 408 2.918131 GCCTGCTTTAAGTTTCGTGCAG 60.918 50.000 0.00 0.00 44.97 4.41
408 409 2.921126 CTGCTTTAAGTTTCGTGCAGG 58.079 47.619 0.00 0.00 42.64 4.85
409 410 1.001815 TGCTTTAAGTTTCGTGCAGGC 60.002 47.619 0.35 0.00 0.00 4.85
410 411 1.666023 GCTTTAAGTTTCGTGCAGGCC 60.666 52.381 0.35 0.00 0.00 5.19
411 412 1.606668 CTTTAAGTTTCGTGCAGGCCA 59.393 47.619 5.01 0.00 0.00 5.36
412 413 0.948678 TTAAGTTTCGTGCAGGCCAC 59.051 50.000 5.01 0.00 41.15 5.01
413 414 0.179043 TAAGTTTCGTGCAGGCCACA 60.179 50.000 5.01 0.00 44.91 4.17
414 415 1.034838 AAGTTTCGTGCAGGCCACAA 61.035 50.000 5.01 0.00 44.91 3.33
415 416 1.299089 GTTTCGTGCAGGCCACAAC 60.299 57.895 5.01 0.00 44.91 3.32
416 417 2.485795 TTTCGTGCAGGCCACAACC 61.486 57.895 5.01 0.00 44.91 3.77
417 418 4.947147 TCGTGCAGGCCACAACCC 62.947 66.667 5.01 0.00 44.91 4.11
422 423 3.751246 CAGGCCACAACCCGCATG 61.751 66.667 5.01 0.00 0.00 4.06
425 426 4.424566 GCCACAACCCGCATGCAG 62.425 66.667 19.57 10.96 0.00 4.41
426 427 4.424566 CCACAACCCGCATGCAGC 62.425 66.667 19.57 0.00 40.87 5.25
427 428 4.424566 CACAACCCGCATGCAGCC 62.425 66.667 19.57 0.00 41.38 4.85
436 437 3.766691 CATGCAGCCCAGGCAACC 61.767 66.667 12.03 0.00 45.60 3.77
437 438 4.304413 ATGCAGCCCAGGCAACCA 62.304 61.111 12.03 4.97 45.60 3.67
438 439 3.831727 ATGCAGCCCAGGCAACCAA 62.832 57.895 12.03 0.00 45.60 3.67
439 440 3.233231 GCAGCCCAGGCAACCAAA 61.233 61.111 12.03 0.00 44.88 3.28
440 441 2.736531 CAGCCCAGGCAACCAAAC 59.263 61.111 12.03 0.00 44.88 2.93
441 442 2.132996 CAGCCCAGGCAACCAAACA 61.133 57.895 12.03 0.00 44.88 2.83
442 443 1.833934 AGCCCAGGCAACCAAACAG 60.834 57.895 12.03 0.00 44.88 3.16
443 444 2.133641 GCCCAGGCAACCAAACAGT 61.134 57.895 3.12 0.00 41.49 3.55
444 445 2.041153 CCCAGGCAACCAAACAGTC 58.959 57.895 0.00 0.00 37.17 3.51
445 446 0.468029 CCCAGGCAACCAAACAGTCT 60.468 55.000 0.00 0.00 37.17 3.24
446 447 0.670162 CCAGGCAACCAAACAGTCTG 59.330 55.000 0.00 0.00 37.17 3.51
447 448 0.670162 CAGGCAACCAAACAGTCTGG 59.330 55.000 4.53 0.00 40.05 3.86
448 449 0.468029 AGGCAACCAAACAGTCTGGG 60.468 55.000 4.53 0.00 38.36 4.45
449 450 1.363807 GCAACCAAACAGTCTGGGC 59.636 57.895 4.53 0.00 38.36 5.36
450 451 1.391157 GCAACCAAACAGTCTGGGCA 61.391 55.000 4.53 0.00 38.36 5.36
451 452 0.385390 CAACCAAACAGTCTGGGCAC 59.615 55.000 4.53 0.00 38.36 5.01
452 453 0.033601 AACCAAACAGTCTGGGCACA 60.034 50.000 4.53 0.00 38.36 4.57
453 454 0.185901 ACCAAACAGTCTGGGCACAT 59.814 50.000 4.53 0.00 38.36 3.21
454 455 0.883833 CCAAACAGTCTGGGCACATC 59.116 55.000 4.53 0.00 0.00 3.06
455 456 0.883833 CAAACAGTCTGGGCACATCC 59.116 55.000 4.53 0.00 0.00 3.51
481 482 3.924507 CCTGGTTGGGCTACATGC 58.075 61.111 0.00 0.00 41.94 4.06
482 483 2.114670 CCTGGTTGGGCTACATGCG 61.115 63.158 0.00 0.00 44.05 4.73
483 484 2.045438 TGGTTGGGCTACATGCGG 60.045 61.111 0.00 0.00 44.05 5.69
484 485 2.828549 GGTTGGGCTACATGCGGG 60.829 66.667 0.00 0.00 44.05 6.13
485 486 3.518068 GTTGGGCTACATGCGGGC 61.518 66.667 0.00 0.00 44.05 6.13
486 487 4.040426 TTGGGCTACATGCGGGCA 62.040 61.111 12.64 0.00 44.05 5.36
487 488 3.575703 TTGGGCTACATGCGGGCAA 62.576 57.895 12.64 0.51 44.05 4.52
488 489 2.519302 GGGCTACATGCGGGCAAT 60.519 61.111 12.64 0.00 44.05 3.56
489 490 2.555547 GGGCTACATGCGGGCAATC 61.556 63.158 12.64 0.00 44.05 2.67
490 491 1.823470 GGCTACATGCGGGCAATCA 60.823 57.895 0.00 0.00 44.05 2.57
491 492 1.383456 GGCTACATGCGGGCAATCAA 61.383 55.000 0.00 0.00 44.05 2.57
492 493 0.455410 GCTACATGCGGGCAATCAAA 59.545 50.000 0.00 0.00 0.00 2.69
493 494 1.067516 GCTACATGCGGGCAATCAAAT 59.932 47.619 0.00 0.00 0.00 2.32
494 495 2.734670 CTACATGCGGGCAATCAAATG 58.265 47.619 0.00 0.00 0.00 2.32
495 496 0.460635 ACATGCGGGCAATCAAATGC 60.461 50.000 0.00 0.00 45.67 3.56
501 502 4.917474 GCAATCAAATGCGGCCTT 57.083 50.000 0.00 0.00 36.45 4.35
502 503 3.142124 GCAATCAAATGCGGCCTTT 57.858 47.368 0.00 0.00 36.45 3.11
503 504 2.292103 GCAATCAAATGCGGCCTTTA 57.708 45.000 0.00 0.00 36.45 1.85
504 505 1.926510 GCAATCAAATGCGGCCTTTAC 59.073 47.619 0.00 0.00 36.45 2.01
505 506 2.184448 CAATCAAATGCGGCCTTTACG 58.816 47.619 0.00 0.00 0.00 3.18
506 507 0.738389 ATCAAATGCGGCCTTTACGG 59.262 50.000 0.00 0.00 0.00 4.02
507 508 0.321741 TCAAATGCGGCCTTTACGGA 60.322 50.000 0.00 0.00 35.80 4.69
508 509 0.738389 CAAATGCGGCCTTTACGGAT 59.262 50.000 0.00 0.00 44.26 4.18
509 510 1.021968 AAATGCGGCCTTTACGGATC 58.978 50.000 0.00 0.00 41.54 3.36
510 511 1.157870 AATGCGGCCTTTACGGATCG 61.158 55.000 0.00 0.00 41.54 3.69
511 512 2.023414 ATGCGGCCTTTACGGATCGA 62.023 55.000 0.00 0.00 37.92 3.59
512 513 1.300697 GCGGCCTTTACGGATCGAT 60.301 57.895 0.00 0.00 34.37 3.59
513 514 1.557443 GCGGCCTTTACGGATCGATG 61.557 60.000 0.54 0.00 34.37 3.84
514 515 0.031585 CGGCCTTTACGGATCGATGA 59.968 55.000 0.54 0.00 34.37 2.92
515 516 1.336887 CGGCCTTTACGGATCGATGAT 60.337 52.381 0.54 0.00 34.37 2.45
516 517 2.338500 GGCCTTTACGGATCGATGATC 58.662 52.381 0.54 0.00 38.25 2.92
517 518 2.288825 GGCCTTTACGGATCGATGATCA 60.289 50.000 0.54 0.00 40.50 2.92
518 519 3.589988 GCCTTTACGGATCGATGATCAT 58.410 45.455 8.25 8.25 40.50 2.45
519 520 3.369147 GCCTTTACGGATCGATGATCATG 59.631 47.826 14.30 5.89 40.50 3.07
520 521 3.928992 CCTTTACGGATCGATGATCATGG 59.071 47.826 14.30 12.58 40.50 3.66
521 522 4.560128 CTTTACGGATCGATGATCATGGT 58.440 43.478 14.30 1.54 40.50 3.55
522 523 4.600692 TTACGGATCGATGATCATGGTT 57.399 40.909 14.30 6.98 40.50 3.67
523 524 3.475566 ACGGATCGATGATCATGGTTT 57.524 42.857 14.30 4.34 40.50 3.27
524 525 3.393800 ACGGATCGATGATCATGGTTTC 58.606 45.455 14.30 12.72 40.50 2.78
525 526 3.181466 ACGGATCGATGATCATGGTTTCA 60.181 43.478 14.30 0.00 40.50 2.69
526 527 3.185188 CGGATCGATGATCATGGTTTCAC 59.815 47.826 14.30 7.18 40.50 3.18
527 528 3.499918 GGATCGATGATCATGGTTTCACC 59.500 47.826 14.30 8.78 40.50 4.02
528 529 3.912496 TCGATGATCATGGTTTCACCT 57.088 42.857 14.30 0.00 39.58 4.00
529 530 3.534554 TCGATGATCATGGTTTCACCTG 58.465 45.455 14.30 0.00 39.58 4.00
530 531 2.032550 CGATGATCATGGTTTCACCTGC 59.967 50.000 14.30 0.00 39.58 4.85
531 532 2.885135 TGATCATGGTTTCACCTGCT 57.115 45.000 0.00 0.00 39.58 4.24
532 533 3.998913 TGATCATGGTTTCACCTGCTA 57.001 42.857 0.00 0.00 39.58 3.49
533 534 3.609853 TGATCATGGTTTCACCTGCTAC 58.390 45.455 0.00 0.00 39.58 3.58
534 535 2.489938 TCATGGTTTCACCTGCTACC 57.510 50.000 0.00 0.00 39.58 3.18
535 536 1.004277 TCATGGTTTCACCTGCTACCC 59.996 52.381 0.00 0.00 39.58 3.69
536 537 0.331616 ATGGTTTCACCTGCTACCCC 59.668 55.000 0.00 0.00 39.58 4.95
537 538 0.770557 TGGTTTCACCTGCTACCCCT 60.771 55.000 0.00 0.00 39.58 4.79
538 539 0.404426 GGTTTCACCTGCTACCCCTT 59.596 55.000 0.00 0.00 34.73 3.95
539 540 1.613520 GGTTTCACCTGCTACCCCTTC 60.614 57.143 0.00 0.00 34.73 3.46
540 541 1.351350 GTTTCACCTGCTACCCCTTCT 59.649 52.381 0.00 0.00 0.00 2.85
541 542 0.984230 TTCACCTGCTACCCCTTCTG 59.016 55.000 0.00 0.00 0.00 3.02
542 543 1.078143 CACCTGCTACCCCTTCTGC 60.078 63.158 0.00 0.00 0.00 4.26
543 544 2.301738 ACCTGCTACCCCTTCTGCC 61.302 63.158 0.00 0.00 0.00 4.85
544 545 2.300967 CCTGCTACCCCTTCTGCCA 61.301 63.158 0.00 0.00 0.00 4.92
545 546 1.685224 CTGCTACCCCTTCTGCCAA 59.315 57.895 0.00 0.00 0.00 4.52
546 547 0.038166 CTGCTACCCCTTCTGCCAAA 59.962 55.000 0.00 0.00 0.00 3.28
547 548 0.480690 TGCTACCCCTTCTGCCAAAA 59.519 50.000 0.00 0.00 0.00 2.44
548 549 1.133325 TGCTACCCCTTCTGCCAAAAA 60.133 47.619 0.00 0.00 0.00 1.94
599 601 3.009033 TGCACCATGACCTAGCTAGTTTT 59.991 43.478 19.31 3.31 0.00 2.43
681 691 4.619227 AGGGGTGCACCAACGACG 62.619 66.667 35.78 0.00 42.91 5.12
743 758 3.808728 TCCTTATCTTTGCCTTCCATCG 58.191 45.455 0.00 0.00 0.00 3.84
757 772 1.621814 TCCATCGACGAAAGGTTTCCT 59.378 47.619 16.38 0.00 33.68 3.36
801 848 4.959210 TGCAAAGAGAGGAGTATCTAGCTT 59.041 41.667 0.00 0.00 30.47 3.74
802 849 5.068460 TGCAAAGAGAGGAGTATCTAGCTTC 59.932 44.000 0.00 0.00 30.47 3.86
805 852 5.663158 AGAGAGGAGTATCTAGCTTCCTT 57.337 43.478 3.91 0.00 33.73 3.36
806 853 6.025793 AGAGAGGAGTATCTAGCTTCCTTT 57.974 41.667 3.91 0.00 33.73 3.11
807 854 5.833131 AGAGAGGAGTATCTAGCTTCCTTTG 59.167 44.000 3.91 0.00 33.73 2.77
808 855 4.898861 AGAGGAGTATCTAGCTTCCTTTGG 59.101 45.833 3.91 0.00 33.73 3.28
846 913 3.127548 CCATTATCACATATTCGGGCTGC 59.872 47.826 0.00 0.00 0.00 5.25
889 960 1.994779 CTTTGGTAATCGTTACGCCGT 59.005 47.619 0.00 0.00 37.00 5.68
890 961 2.077413 TTGGTAATCGTTACGCCGTT 57.923 45.000 0.00 0.00 37.00 4.44
927 1185 2.998097 CGATCCTGGCTTCCCCAA 59.002 61.111 0.00 0.00 44.81 4.12
992 1277 7.372918 GTGAGCTAAAGAAGTCTAATACGTACG 59.627 40.741 15.01 15.01 0.00 3.67
1019 1310 7.495934 CAGTATAATGGACAAGTACAAGGGAAG 59.504 40.741 0.00 0.00 0.00 3.46
1021 1315 1.702957 TGGACAAGTACAAGGGAAGGG 59.297 52.381 0.00 0.00 0.00 3.95
1545 2025 2.082140 TGTGGCGGTATATCCAGTCT 57.918 50.000 0.00 0.00 35.57 3.24
1660 2155 9.167311 ACTCAATTACTTGTTCATCCATTAGTC 57.833 33.333 0.00 0.00 33.87 2.59
1665 2162 8.722480 TTACTTGTTCATCCATTAGTCATCTG 57.278 34.615 0.00 0.00 0.00 2.90
1685 2182 8.950210 TCATCTGTTCTTCACCTTTTCATATTC 58.050 33.333 0.00 0.00 0.00 1.75
1708 2215 8.578308 TTCTTTAATTGACTTCATGTGCAAAG 57.422 30.769 0.00 0.00 0.00 2.77
1721 2228 5.125900 TCATGTGCAAAGAAATACCATCCTG 59.874 40.000 0.00 0.00 0.00 3.86
1734 2308 7.881775 AATACCATCCTGTCAAAATTAGGTC 57.118 36.000 0.00 0.00 33.30 3.85
1786 2363 9.586732 AATTAAAAAGGTGCATATATAGGAGCA 57.413 29.630 0.00 1.11 34.10 4.26
1844 2445 2.153645 CAACTATGCAAGCTCCACACA 58.846 47.619 0.00 0.00 0.00 3.72
1848 2450 1.813513 ATGCAAGCTCCACACAGTAC 58.186 50.000 0.00 0.00 0.00 2.73
1851 2453 1.865865 CAAGCTCCACACAGTACGTT 58.134 50.000 0.00 0.00 0.00 3.99
1862 2464 4.855388 CACACAGTACGTTGTCATACCTAC 59.145 45.833 0.00 0.00 0.00 3.18
1890 2492 6.869913 GGAAGATCAACAATGCAGAATGAAAA 59.130 34.615 0.00 0.00 39.69 2.29
1894 2496 8.717821 AGATCAACAATGCAGAATGAAAATTTG 58.282 29.630 0.00 0.00 39.69 2.32
1922 2524 4.974368 TTAATAGTGCAAAATCCCCGTG 57.026 40.909 0.00 0.00 0.00 4.94
1943 2545 9.999660 CCCGTGAGCTCTAACTATCTATATATA 57.000 37.037 16.19 0.00 0.00 0.86
1957 2568 6.694877 TCTATATATACATGTCAGGACGCC 57.305 41.667 0.00 0.00 0.00 5.68
1968 2579 2.122167 AGGACGCCCGAGAGATCAC 61.122 63.158 0.00 0.00 37.58 3.06
1969 2580 2.413765 GACGCCCGAGAGATCACC 59.586 66.667 0.00 0.00 0.00 4.02
1996 2607 2.076863 GTTCTTGATTCCCTGTGTCCG 58.923 52.381 0.00 0.00 0.00 4.79
2062 2679 3.306780 CCCTCGACATCTTACACCAAAGT 60.307 47.826 0.00 0.00 0.00 2.66
2074 2691 4.657814 ACACCAAAGTCTTACCCATGAT 57.342 40.909 0.00 0.00 0.00 2.45
2089 2706 0.253044 ATGATGACCACCAAGACCGG 59.747 55.000 0.00 0.00 0.00 5.28
2146 2763 6.656632 ATTGAGATCTACGAAGCAGGAATA 57.343 37.500 0.00 0.00 0.00 1.75
2200 2817 0.179094 ACGTGCACTTCGAACAAGGA 60.179 50.000 16.19 0.00 0.00 3.36
2212 2829 2.349886 CGAACAAGGAGTGCTAAGCATC 59.650 50.000 0.00 0.00 41.91 3.91
2218 2835 2.124736 GTGCTAAGCATCCCGGCA 60.125 61.111 0.00 0.00 41.91 5.69
2254 2871 0.321996 GCACCGAGAAGAGGTTCCTT 59.678 55.000 0.00 0.00 40.59 3.36
2370 2987 1.757118 TGTAGCCCTGCTCAGATGTAC 59.243 52.381 0.00 0.00 40.44 2.90
2483 3100 0.107361 CAGGCTCCATGATGTGCAGA 60.107 55.000 9.25 0.00 0.00 4.26
2605 3222 5.523916 CGCCACTGTTATTCTATTAGTTGCT 59.476 40.000 0.00 0.00 30.50 3.91
2672 3289 7.883311 AGTACATGTCAACCTAGTAGCAAATTT 59.117 33.333 0.00 0.00 0.00 1.82
2673 3290 7.524717 ACATGTCAACCTAGTAGCAAATTTT 57.475 32.000 0.00 0.00 0.00 1.82
2733 3350 7.334671 GGTTTTGTTAGGAAAAACATTTGACCA 59.665 33.333 12.32 0.00 45.25 4.02
2734 3351 8.722394 GTTTTGTTAGGAAAAACATTTGACCAA 58.278 29.630 6.84 0.00 43.71 3.67
2815 3432 7.857885 TGTTTTAAAAGCACCTTTTGTTGTTTG 59.142 29.630 11.94 0.00 42.61 2.93
2822 3439 5.122082 AGCACCTTTTGTTGTTTGTGATTTG 59.878 36.000 0.00 0.00 0.00 2.32
2823 3440 5.106752 GCACCTTTTGTTGTTTGTGATTTGT 60.107 36.000 0.00 0.00 0.00 2.83
2824 3441 6.305639 CACCTTTTGTTGTTTGTGATTTGTG 58.694 36.000 0.00 0.00 0.00 3.33
2826 3443 6.147000 ACCTTTTGTTGTTTGTGATTTGTGAC 59.853 34.615 0.00 0.00 0.00 3.67
2827 3444 6.146837 CCTTTTGTTGTTTGTGATTTGTGACA 59.853 34.615 0.00 0.00 0.00 3.58
2828 3445 6.459257 TTTGTTGTTTGTGATTTGTGACAC 57.541 33.333 0.00 0.00 37.51 3.67
2829 3446 4.162072 TGTTGTTTGTGATTTGTGACACG 58.838 39.130 0.22 0.00 39.52 4.49
3036 3654 4.810491 GCAACAAATTCAAAAGCCTTGAGA 59.190 37.500 0.00 0.00 0.00 3.27
3242 3861 4.461781 GGATGGGAGCCAAGAATATCATTG 59.538 45.833 0.00 0.00 36.95 2.82
3418 4037 1.240256 CGAGATCTCTAACCCCTCCG 58.760 60.000 20.26 0.00 0.00 4.63
3429 4048 1.301623 CCCCTCCGCCACAACATAA 59.698 57.895 0.00 0.00 0.00 1.90
3432 4051 0.035439 CCTCCGCCACAACATAAGGT 60.035 55.000 0.00 0.00 0.00 3.50
3445 4064 5.351948 AACATAAGGTTGCTTTGGTTTGT 57.648 34.783 0.00 0.00 38.60 2.83
3451 4070 4.532834 AGGTTGCTTTGGTTTGTCTCTAA 58.467 39.130 0.00 0.00 0.00 2.10
3556 4175 1.075536 TGCACTCCCTCACTAGACTCA 59.924 52.381 0.00 0.00 0.00 3.41
3562 4181 4.536888 ACTCCCTCACTAGACTCAGAGTAA 59.463 45.833 2.00 0.00 31.84 2.24
3563 4182 5.192923 ACTCCCTCACTAGACTCAGAGTAAT 59.807 44.000 2.00 0.00 31.84 1.89
3566 4185 8.507582 TCCCTCACTAGACTCAGAGTAATATA 57.492 38.462 2.00 0.00 0.00 0.86
3568 4187 8.380099 CCCTCACTAGACTCAGAGTAATATAGT 58.620 40.741 2.00 7.16 0.00 2.12
3592 4211 7.012327 AGTCCATATGTATTTGTGGAATCAACG 59.988 37.037 1.24 0.00 42.01 4.10
3603 4222 5.764131 TGTGGAATCAACGACAAATTAACC 58.236 37.500 0.00 0.00 0.00 2.85
3636 4255 1.393603 CCACATGCCTAGAGACGAGA 58.606 55.000 0.00 0.00 0.00 4.04
3659 4278 4.026052 CCCTCTAATTTTCTGGCCAACAT 58.974 43.478 7.01 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.721706 GTCCACCAGGAGGGCTGG 61.722 72.222 0.00 0.00 46.92 4.85
13 14 4.087892 CGTCCACCAGGAGGGCTG 62.088 72.222 5.92 0.00 46.92 4.85
17 18 3.636231 TTGCCGTCCACCAGGAGG 61.636 66.667 0.00 0.00 46.92 4.30
18 19 2.358737 GTTGCCGTCCACCAGGAG 60.359 66.667 0.00 0.00 46.92 3.69
19 20 3.164977 TGTTGCCGTCCACCAGGA 61.165 61.111 0.00 0.00 43.21 3.86
20 21 2.469465 ATCTGTTGCCGTCCACCAGG 62.469 60.000 0.00 0.00 34.95 4.45
21 22 1.003355 ATCTGTTGCCGTCCACCAG 60.003 57.895 0.00 0.00 35.47 4.00
22 23 1.302431 CATCTGTTGCCGTCCACCA 60.302 57.895 0.00 0.00 0.00 4.17
23 24 2.040544 CCATCTGTTGCCGTCCACC 61.041 63.158 0.00 0.00 0.00 4.61
24 25 2.040544 CCCATCTGTTGCCGTCCAC 61.041 63.158 0.00 0.00 0.00 4.02
25 26 2.350895 CCCATCTGTTGCCGTCCA 59.649 61.111 0.00 0.00 0.00 4.02
26 27 2.438434 CCCCATCTGTTGCCGTCC 60.438 66.667 0.00 0.00 0.00 4.79
27 28 2.438434 CCCCCATCTGTTGCCGTC 60.438 66.667 0.00 0.00 0.00 4.79
28 29 2.484287 CTTCCCCCATCTGTTGCCGT 62.484 60.000 0.00 0.00 0.00 5.68
29 30 1.750399 CTTCCCCCATCTGTTGCCG 60.750 63.158 0.00 0.00 0.00 5.69
30 31 0.681243 GTCTTCCCCCATCTGTTGCC 60.681 60.000 0.00 0.00 0.00 4.52
31 32 1.026718 CGTCTTCCCCCATCTGTTGC 61.027 60.000 0.00 0.00 0.00 4.17
32 33 1.026718 GCGTCTTCCCCCATCTGTTG 61.027 60.000 0.00 0.00 0.00 3.33
33 34 1.201429 AGCGTCTTCCCCCATCTGTT 61.201 55.000 0.00 0.00 0.00 3.16
34 35 1.613630 AGCGTCTTCCCCCATCTGT 60.614 57.895 0.00 0.00 0.00 3.41
35 36 1.144936 GAGCGTCTTCCCCCATCTG 59.855 63.158 0.00 0.00 0.00 2.90
36 37 2.427245 CGAGCGTCTTCCCCCATCT 61.427 63.158 0.00 0.00 0.00 2.90
37 38 2.107141 CGAGCGTCTTCCCCCATC 59.893 66.667 0.00 0.00 0.00 3.51
38 39 4.162690 GCGAGCGTCTTCCCCCAT 62.163 66.667 0.00 0.00 0.00 4.00
40 41 4.162690 ATGCGAGCGTCTTCCCCC 62.163 66.667 0.00 0.00 0.00 5.40
41 42 2.586357 GATGCGAGCGTCTTCCCC 60.586 66.667 9.82 0.00 0.00 4.81
42 43 2.167861 GTGATGCGAGCGTCTTCCC 61.168 63.158 16.93 1.25 33.41 3.97
43 44 2.167861 GGTGATGCGAGCGTCTTCC 61.168 63.158 16.93 14.67 33.41 3.46
44 45 2.508891 CGGTGATGCGAGCGTCTTC 61.509 63.158 16.93 10.45 33.41 2.87
45 46 2.507102 CGGTGATGCGAGCGTCTT 60.507 61.111 16.93 0.00 33.41 3.01
46 47 3.440415 TCGGTGATGCGAGCGTCT 61.440 61.111 16.93 0.00 38.04 4.18
47 48 3.248171 GTCGGTGATGCGAGCGTC 61.248 66.667 10.14 10.14 38.04 5.19
51 52 4.794439 TGGCGTCGGTGATGCGAG 62.794 66.667 5.04 0.00 44.61 5.03
52 53 4.794439 CTGGCGTCGGTGATGCGA 62.794 66.667 5.04 0.62 44.61 5.10
54 55 4.760047 ACCTGGCGTCGGTGATGC 62.760 66.667 2.76 2.41 43.13 3.91
55 56 2.509336 GACCTGGCGTCGGTGATG 60.509 66.667 8.24 0.00 34.19 3.07
56 57 3.771160 GGACCTGGCGTCGGTGAT 61.771 66.667 8.24 0.00 42.99 3.06
67 68 3.316573 GAACTCGGGCAGGGACCTG 62.317 68.421 13.99 13.99 46.15 4.00
68 69 2.164332 TAGAACTCGGGCAGGGACCT 62.164 60.000 0.00 0.00 0.00 3.85
69 70 1.677637 CTAGAACTCGGGCAGGGACC 61.678 65.000 0.00 0.00 0.00 4.46
70 71 0.683504 TCTAGAACTCGGGCAGGGAC 60.684 60.000 0.00 0.00 0.00 4.46
71 72 0.395862 CTCTAGAACTCGGGCAGGGA 60.396 60.000 0.00 0.00 0.00 4.20
72 73 2.022240 GCTCTAGAACTCGGGCAGGG 62.022 65.000 0.00 0.00 0.00 4.45
73 74 1.439644 GCTCTAGAACTCGGGCAGG 59.560 63.158 0.00 0.00 0.00 4.85
74 75 1.439644 GGCTCTAGAACTCGGGCAG 59.560 63.158 0.00 0.00 0.00 4.85
75 76 2.058595 GGGCTCTAGAACTCGGGCA 61.059 63.158 0.00 0.00 0.00 5.36
76 77 2.816012 GGGCTCTAGAACTCGGGC 59.184 66.667 0.00 0.00 0.00 6.13
77 78 2.491022 CCGGGCTCTAGAACTCGGG 61.491 68.421 24.15 11.45 34.54 5.14
78 79 3.121019 CCGGGCTCTAGAACTCGG 58.879 66.667 19.51 19.51 0.00 4.63
79 80 2.413765 GCCGGGCTCTAGAACTCG 59.586 66.667 12.87 8.49 0.00 4.18
80 81 2.022240 CTGGCCGGGCTCTAGAACTC 62.022 65.000 29.87 0.00 0.00 3.01
81 82 2.038975 TGGCCGGGCTCTAGAACT 59.961 61.111 29.87 0.00 0.00 3.01
82 83 2.501610 CTGGCCGGGCTCTAGAAC 59.498 66.667 29.87 0.07 0.00 3.01
83 84 3.470888 GCTGGCCGGGCTCTAGAA 61.471 66.667 29.87 6.41 0.00 2.10
102 103 2.996395 CCAGCATCCAGGAGCACT 59.004 61.111 11.98 0.00 0.00 4.40
103 104 2.827642 GCCAGCATCCAGGAGCAC 60.828 66.667 11.98 0.00 0.00 4.40
104 105 4.478371 CGCCAGCATCCAGGAGCA 62.478 66.667 11.98 0.00 0.00 4.26
105 106 3.472943 ATCGCCAGCATCCAGGAGC 62.473 63.158 0.00 0.00 0.00 4.70
106 107 1.597302 CATCGCCAGCATCCAGGAG 60.597 63.158 0.00 0.00 0.00 3.69
107 108 2.507452 CATCGCCAGCATCCAGGA 59.493 61.111 0.00 0.00 0.00 3.86
108 109 3.285215 GCATCGCCAGCATCCAGG 61.285 66.667 0.00 0.00 0.00 4.45
109 110 3.646976 CGCATCGCCAGCATCCAG 61.647 66.667 0.00 0.00 0.00 3.86
127 128 3.760035 CTGACCCCCGTCGACCAG 61.760 72.222 10.58 6.42 42.37 4.00
128 129 4.289101 TCTGACCCCCGTCGACCA 62.289 66.667 10.58 0.00 42.37 4.02
129 130 3.450115 CTCTGACCCCCGTCGACC 61.450 72.222 10.58 0.00 42.37 4.79
130 131 3.450115 CCTCTGACCCCCGTCGAC 61.450 72.222 5.18 5.18 42.37 4.20
131 132 2.992576 ATCCTCTGACCCCCGTCGA 61.993 63.158 0.00 0.00 42.37 4.20
132 133 2.442272 ATCCTCTGACCCCCGTCG 60.442 66.667 0.00 0.00 42.37 5.12
133 134 2.435693 CCATCCTCTGACCCCCGTC 61.436 68.421 0.00 0.00 39.66 4.79
134 135 2.365635 CCATCCTCTGACCCCCGT 60.366 66.667 0.00 0.00 0.00 5.28
135 136 3.866582 GCCATCCTCTGACCCCCG 61.867 72.222 0.00 0.00 0.00 5.73
136 137 3.866582 CGCCATCCTCTGACCCCC 61.867 72.222 0.00 0.00 0.00 5.40
137 138 4.554036 GCGCCATCCTCTGACCCC 62.554 72.222 0.00 0.00 0.00 4.95
138 139 4.899239 CGCGCCATCCTCTGACCC 62.899 72.222 0.00 0.00 0.00 4.46
139 140 4.899239 CCGCGCCATCCTCTGACC 62.899 72.222 0.00 0.00 0.00 4.02
156 157 4.292178 CTCCTCCGATGGCTCCGC 62.292 72.222 0.00 0.00 0.00 5.54
157 158 2.519541 TCTCCTCCGATGGCTCCG 60.520 66.667 0.00 0.00 0.00 4.63
158 159 2.206536 CCTCTCCTCCGATGGCTCC 61.207 68.421 0.00 0.00 0.00 4.70
159 160 1.152652 TCCTCTCCTCCGATGGCTC 60.153 63.158 0.00 0.00 0.00 4.70
160 161 1.152567 CTCCTCTCCTCCGATGGCT 60.153 63.158 0.00 0.00 0.00 4.75
161 162 1.152652 TCTCCTCTCCTCCGATGGC 60.153 63.158 0.00 0.00 0.00 4.40
162 163 0.539438 CCTCTCCTCTCCTCCGATGG 60.539 65.000 0.00 0.00 0.00 3.51
163 164 0.539438 CCCTCTCCTCTCCTCCGATG 60.539 65.000 0.00 0.00 0.00 3.84
164 165 0.699577 TCCCTCTCCTCTCCTCCGAT 60.700 60.000 0.00 0.00 0.00 4.18
165 166 1.307953 TCCCTCTCCTCTCCTCCGA 60.308 63.158 0.00 0.00 0.00 4.55
166 167 1.150536 CTCCCTCTCCTCTCCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
167 168 0.478507 CTCTCCCTCTCCTCTCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
168 169 1.143073 GTCTCTCCCTCTCCTCTCCTC 59.857 61.905 0.00 0.00 0.00 3.71
169 170 1.222567 GTCTCTCCCTCTCCTCTCCT 58.777 60.000 0.00 0.00 0.00 3.69
170 171 0.179029 CGTCTCTCCCTCTCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
171 172 0.179029 CCGTCTCTCCCTCTCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
172 173 0.917333 ACCGTCTCTCCCTCTCCTCT 60.917 60.000 0.00 0.00 0.00 3.69
173 174 0.750182 CACCGTCTCTCCCTCTCCTC 60.750 65.000 0.00 0.00 0.00 3.71
174 175 1.208844 TCACCGTCTCTCCCTCTCCT 61.209 60.000 0.00 0.00 0.00 3.69
175 176 0.750182 CTCACCGTCTCTCCCTCTCC 60.750 65.000 0.00 0.00 0.00 3.71
176 177 0.750182 CCTCACCGTCTCTCCCTCTC 60.750 65.000 0.00 0.00 0.00 3.20
177 178 1.304952 CCTCACCGTCTCTCCCTCT 59.695 63.158 0.00 0.00 0.00 3.69
178 179 2.419739 GCCTCACCGTCTCTCCCTC 61.420 68.421 0.00 0.00 0.00 4.30
179 180 2.363147 GCCTCACCGTCTCTCCCT 60.363 66.667 0.00 0.00 0.00 4.20
180 181 2.680352 TGCCTCACCGTCTCTCCC 60.680 66.667 0.00 0.00 0.00 4.30
181 182 1.662438 CTCTGCCTCACCGTCTCTCC 61.662 65.000 0.00 0.00 0.00 3.71
182 183 0.678366 TCTCTGCCTCACCGTCTCTC 60.678 60.000 0.00 0.00 0.00 3.20
183 184 0.679640 CTCTCTGCCTCACCGTCTCT 60.680 60.000 0.00 0.00 0.00 3.10
184 185 1.662438 CCTCTCTGCCTCACCGTCTC 61.662 65.000 0.00 0.00 0.00 3.36
185 186 1.680651 CCTCTCTGCCTCACCGTCT 60.681 63.158 0.00 0.00 0.00 4.18
186 187 2.716017 CCCTCTCTGCCTCACCGTC 61.716 68.421 0.00 0.00 0.00 4.79
187 188 2.681778 CCCTCTCTGCCTCACCGT 60.682 66.667 0.00 0.00 0.00 4.83
188 189 2.363018 TCCCTCTCTGCCTCACCG 60.363 66.667 0.00 0.00 0.00 4.94
189 190 2.730524 GCTCCCTCTCTGCCTCACC 61.731 68.421 0.00 0.00 0.00 4.02
190 191 2.899505 GCTCCCTCTCTGCCTCAC 59.100 66.667 0.00 0.00 0.00 3.51
191 192 2.757508 CGCTCCCTCTCTGCCTCA 60.758 66.667 0.00 0.00 0.00 3.86
192 193 3.535962 CCGCTCCCTCTCTGCCTC 61.536 72.222 0.00 0.00 0.00 4.70
193 194 4.390556 ACCGCTCCCTCTCTGCCT 62.391 66.667 0.00 0.00 0.00 4.75
194 195 4.154347 CACCGCTCCCTCTCTGCC 62.154 72.222 0.00 0.00 0.00 4.85
195 196 4.154347 CCACCGCTCCCTCTCTGC 62.154 72.222 0.00 0.00 0.00 4.26
196 197 3.465403 CCCACCGCTCCCTCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
197 198 3.239627 TTCCCACCGCTCCCTCTCT 62.240 63.158 0.00 0.00 0.00 3.10
198 199 2.683933 TTCCCACCGCTCCCTCTC 60.684 66.667 0.00 0.00 0.00 3.20
199 200 3.003763 GTTCCCACCGCTCCCTCT 61.004 66.667 0.00 0.00 0.00 3.69
200 201 3.316573 CTGTTCCCACCGCTCCCTC 62.317 68.421 0.00 0.00 0.00 4.30
201 202 3.322466 CTGTTCCCACCGCTCCCT 61.322 66.667 0.00 0.00 0.00 4.20
202 203 3.637273 ACTGTTCCCACCGCTCCC 61.637 66.667 0.00 0.00 0.00 4.30
203 204 2.358737 CACTGTTCCCACCGCTCC 60.359 66.667 0.00 0.00 0.00 4.70
204 205 3.050275 GCACTGTTCCCACCGCTC 61.050 66.667 0.00 0.00 0.00 5.03
205 206 4.988598 CGCACTGTTCCCACCGCT 62.989 66.667 0.00 0.00 0.00 5.52
209 210 4.643387 AGCCCGCACTGTTCCCAC 62.643 66.667 0.00 0.00 0.00 4.61
210 211 4.641645 CAGCCCGCACTGTTCCCA 62.642 66.667 0.00 0.00 32.78 4.37
222 223 4.864334 CCTGTCATCGCCCAGCCC 62.864 72.222 0.00 0.00 0.00 5.19
223 224 3.746949 CTCCTGTCATCGCCCAGCC 62.747 68.421 0.00 0.00 0.00 4.85
224 225 2.202987 CTCCTGTCATCGCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
225 226 1.326213 ACTCTCCTGTCATCGCCCAG 61.326 60.000 0.00 0.00 0.00 4.45
226 227 1.305297 ACTCTCCTGTCATCGCCCA 60.305 57.895 0.00 0.00 0.00 5.36
227 228 1.142748 CACTCTCCTGTCATCGCCC 59.857 63.158 0.00 0.00 0.00 6.13
228 229 1.142748 CCACTCTCCTGTCATCGCC 59.857 63.158 0.00 0.00 0.00 5.54
229 230 1.142748 CCCACTCTCCTGTCATCGC 59.857 63.158 0.00 0.00 0.00 4.58
230 231 1.680522 CCCCCACTCTCCTGTCATCG 61.681 65.000 0.00 0.00 0.00 3.84
231 232 2.216148 CCCCCACTCTCCTGTCATC 58.784 63.158 0.00 0.00 0.00 2.92
232 233 4.488303 CCCCCACTCTCCTGTCAT 57.512 61.111 0.00 0.00 0.00 3.06
247 248 1.986695 ATAACTCCCCCTCCCTCCCC 61.987 65.000 0.00 0.00 0.00 4.81
248 249 0.768609 CATAACTCCCCCTCCCTCCC 60.769 65.000 0.00 0.00 0.00 4.30
249 250 0.267960 TCATAACTCCCCCTCCCTCC 59.732 60.000 0.00 0.00 0.00 4.30
250 251 1.723288 CTCATAACTCCCCCTCCCTC 58.277 60.000 0.00 0.00 0.00 4.30
251 252 0.400670 GCTCATAACTCCCCCTCCCT 60.401 60.000 0.00 0.00 0.00 4.20
252 253 1.419720 GGCTCATAACTCCCCCTCCC 61.420 65.000 0.00 0.00 0.00 4.30
253 254 1.759459 CGGCTCATAACTCCCCCTCC 61.759 65.000 0.00 0.00 0.00 4.30
254 255 1.049289 ACGGCTCATAACTCCCCCTC 61.049 60.000 0.00 0.00 0.00 4.30
255 256 1.003051 ACGGCTCATAACTCCCCCT 59.997 57.895 0.00 0.00 0.00 4.79
256 257 1.446366 GACGGCTCATAACTCCCCC 59.554 63.158 0.00 0.00 0.00 5.40
257 258 1.067582 CGACGGCTCATAACTCCCC 59.932 63.158 0.00 0.00 0.00 4.81
258 259 1.591863 GCGACGGCTCATAACTCCC 60.592 63.158 0.00 0.00 35.83 4.30
259 260 1.944676 CGCGACGGCTCATAACTCC 60.945 63.158 0.00 0.00 36.88 3.85
260 261 1.201098 GACGCGACGGCTCATAACTC 61.201 60.000 15.93 0.00 36.88 3.01
261 262 1.226603 GACGCGACGGCTCATAACT 60.227 57.895 15.93 0.00 36.88 2.24
262 263 2.228914 GGACGCGACGGCTCATAAC 61.229 63.158 15.93 0.00 34.07 1.89
263 264 2.103538 GGACGCGACGGCTCATAA 59.896 61.111 15.93 0.00 34.07 1.90
264 265 4.246206 CGGACGCGACGGCTCATA 62.246 66.667 15.93 0.00 34.07 2.15
332 333 1.004440 GTTTCTCACGAGCCTGGCT 60.004 57.895 23.64 23.64 43.88 4.75
333 334 1.004440 AGTTTCTCACGAGCCTGGC 60.004 57.895 11.65 11.65 0.00 4.85
334 335 1.294659 GCAGTTTCTCACGAGCCTGG 61.295 60.000 0.00 0.00 0.00 4.45
335 336 1.294659 GGCAGTTTCTCACGAGCCTG 61.295 60.000 0.00 0.00 44.03 4.85
336 337 1.004440 GGCAGTTTCTCACGAGCCT 60.004 57.895 0.00 0.00 44.03 4.58
337 338 2.383527 CGGCAGTTTCTCACGAGCC 61.384 63.158 0.00 0.00 43.98 4.70
338 339 0.737715 ATCGGCAGTTTCTCACGAGC 60.738 55.000 0.00 0.00 36.97 5.03
339 340 1.656095 GAATCGGCAGTTTCTCACGAG 59.344 52.381 0.00 0.00 36.97 4.18
340 341 1.272490 AGAATCGGCAGTTTCTCACGA 59.728 47.619 4.56 0.00 32.57 4.35
341 342 1.391485 CAGAATCGGCAGTTTCTCACG 59.609 52.381 7.14 0.00 35.01 4.35
342 343 1.129437 GCAGAATCGGCAGTTTCTCAC 59.871 52.381 7.14 0.65 35.01 3.51
343 344 1.270785 TGCAGAATCGGCAGTTTCTCA 60.271 47.619 3.50 6.50 35.01 3.27
344 345 1.442769 TGCAGAATCGGCAGTTTCTC 58.557 50.000 3.50 4.44 35.01 2.87
345 346 3.631453 TGCAGAATCGGCAGTTTCT 57.369 47.368 3.50 4.56 37.00 2.52
351 352 1.298157 CGGAAACTGCAGAATCGGCA 61.298 55.000 23.35 7.95 39.32 5.69
352 353 1.425428 CGGAAACTGCAGAATCGGC 59.575 57.895 23.35 0.00 0.00 5.54
353 354 1.021390 AGCGGAAACTGCAGAATCGG 61.021 55.000 23.35 20.59 33.30 4.18
354 355 0.095935 CAGCGGAAACTGCAGAATCG 59.904 55.000 23.35 18.06 33.30 3.34
355 356 0.449388 CCAGCGGAAACTGCAGAATC 59.551 55.000 23.35 17.03 36.29 2.52
356 357 0.962356 CCCAGCGGAAACTGCAGAAT 60.962 55.000 23.35 8.38 36.29 2.40
357 358 1.600636 CCCAGCGGAAACTGCAGAA 60.601 57.895 23.35 0.00 36.29 3.02
358 359 2.032528 CCCAGCGGAAACTGCAGA 59.967 61.111 23.35 0.00 36.29 4.26
359 360 3.741476 GCCCAGCGGAAACTGCAG 61.741 66.667 13.48 13.48 36.29 4.41
362 363 3.058160 CTGGCCCAGCGGAAACTG 61.058 66.667 0.00 0.00 37.42 3.16
363 364 4.351054 CCTGGCCCAGCGGAAACT 62.351 66.667 4.81 0.00 0.00 2.66
380 381 0.960861 AACTTAAAGCAGGCCGGAGC 60.961 55.000 5.05 8.57 38.76 4.70
381 382 1.468914 GAAACTTAAAGCAGGCCGGAG 59.531 52.381 5.05 0.00 0.00 4.63
382 383 1.530323 GAAACTTAAAGCAGGCCGGA 58.470 50.000 5.05 0.00 0.00 5.14
383 384 0.168128 CGAAACTTAAAGCAGGCCGG 59.832 55.000 0.00 0.00 0.00 6.13
384 385 0.872388 ACGAAACTTAAAGCAGGCCG 59.128 50.000 0.00 0.00 0.00 6.13
385 386 1.666023 GCACGAAACTTAAAGCAGGCC 60.666 52.381 0.00 0.00 0.00 5.19
386 387 1.001815 TGCACGAAACTTAAAGCAGGC 60.002 47.619 0.00 0.00 0.00 4.85
387 388 2.921126 CTGCACGAAACTTAAAGCAGG 58.079 47.619 0.00 0.00 44.10 4.85
388 389 2.918131 GCCTGCACGAAACTTAAAGCAG 60.918 50.000 0.00 0.00 46.55 4.24
389 390 1.001815 GCCTGCACGAAACTTAAAGCA 60.002 47.619 0.00 0.00 0.00 3.91
390 391 1.666023 GGCCTGCACGAAACTTAAAGC 60.666 52.381 0.00 0.00 0.00 3.51
391 392 1.606668 TGGCCTGCACGAAACTTAAAG 59.393 47.619 3.32 0.00 0.00 1.85
392 393 1.335496 GTGGCCTGCACGAAACTTAAA 59.665 47.619 3.32 0.00 0.00 1.52
393 394 0.948678 GTGGCCTGCACGAAACTTAA 59.051 50.000 3.32 0.00 0.00 1.85
394 395 0.179043 TGTGGCCTGCACGAAACTTA 60.179 50.000 3.32 0.00 0.00 2.24
395 396 1.034838 TTGTGGCCTGCACGAAACTT 61.035 50.000 3.32 0.00 0.00 2.66
396 397 1.453015 TTGTGGCCTGCACGAAACT 60.453 52.632 3.32 0.00 0.00 2.66
397 398 1.299089 GTTGTGGCCTGCACGAAAC 60.299 57.895 3.32 0.00 0.00 2.78
398 399 2.485795 GGTTGTGGCCTGCACGAAA 61.486 57.895 3.32 0.00 0.00 3.46
399 400 2.904866 GGTTGTGGCCTGCACGAA 60.905 61.111 3.32 0.00 0.00 3.85
400 401 4.947147 GGGTTGTGGCCTGCACGA 62.947 66.667 3.32 0.00 0.00 4.35
405 406 3.751246 CATGCGGGTTGTGGCCTG 61.751 66.667 3.32 0.00 37.94 4.85
408 409 4.424566 CTGCATGCGGGTTGTGGC 62.425 66.667 19.33 0.00 0.00 5.01
409 410 4.424566 GCTGCATGCGGGTTGTGG 62.425 66.667 27.34 4.34 0.00 4.17
410 411 4.424566 GGCTGCATGCGGGTTGTG 62.425 66.667 27.34 5.67 44.05 3.33
418 419 4.446413 GTTGCCTGGGCTGCATGC 62.446 66.667 11.82 11.82 42.51 4.06
419 420 3.766691 GGTTGCCTGGGCTGCATG 61.767 66.667 13.05 0.00 42.51 4.06
420 421 3.831727 TTGGTTGCCTGGGCTGCAT 62.832 57.895 13.05 0.00 42.51 3.96
421 422 4.536526 TTGGTTGCCTGGGCTGCA 62.537 61.111 13.05 0.00 42.51 4.41
422 423 3.233231 TTTGGTTGCCTGGGCTGC 61.233 61.111 13.05 5.46 42.51 5.25
423 424 2.091102 CTGTTTGGTTGCCTGGGCTG 62.091 60.000 13.05 0.00 42.51 4.85
424 425 1.833934 CTGTTTGGTTGCCTGGGCT 60.834 57.895 13.05 0.00 42.51 5.19
425 426 2.087462 GACTGTTTGGTTGCCTGGGC 62.087 60.000 4.43 4.43 42.35 5.36
426 427 0.468029 AGACTGTTTGGTTGCCTGGG 60.468 55.000 0.00 0.00 0.00 4.45
427 428 0.670162 CAGACTGTTTGGTTGCCTGG 59.330 55.000 0.00 0.00 0.00 4.45
428 429 0.670162 CCAGACTGTTTGGTTGCCTG 59.330 55.000 9.11 0.00 0.00 4.85
429 430 0.468029 CCCAGACTGTTTGGTTGCCT 60.468 55.000 15.37 0.00 33.73 4.75
430 431 2.041153 CCCAGACTGTTTGGTTGCC 58.959 57.895 15.37 0.00 33.73 4.52
431 432 1.363807 GCCCAGACTGTTTGGTTGC 59.636 57.895 15.37 9.25 33.73 4.17
432 433 0.385390 GTGCCCAGACTGTTTGGTTG 59.615 55.000 15.37 3.37 33.73 3.77
433 434 0.033601 TGTGCCCAGACTGTTTGGTT 60.034 50.000 15.37 0.00 33.73 3.67
434 435 0.185901 ATGTGCCCAGACTGTTTGGT 59.814 50.000 15.37 0.00 33.73 3.67
435 436 0.883833 GATGTGCCCAGACTGTTTGG 59.116 55.000 10.27 10.27 35.41 3.28
436 437 0.883833 GGATGTGCCCAGACTGTTTG 59.116 55.000 0.93 0.00 0.00 2.93
437 438 3.346426 GGATGTGCCCAGACTGTTT 57.654 52.632 0.93 0.00 0.00 2.83
464 465 2.114670 CGCATGTAGCCCAACCAGG 61.115 63.158 0.00 0.00 41.38 4.45
465 466 2.114670 CCGCATGTAGCCCAACCAG 61.115 63.158 0.00 0.00 41.38 4.00
466 467 2.045438 CCGCATGTAGCCCAACCA 60.045 61.111 0.00 0.00 41.38 3.67
467 468 2.828549 CCCGCATGTAGCCCAACC 60.829 66.667 0.00 0.00 41.38 3.77
468 469 3.518068 GCCCGCATGTAGCCCAAC 61.518 66.667 0.00 0.00 41.38 3.77
469 470 2.852563 ATTGCCCGCATGTAGCCCAA 62.853 55.000 0.00 0.00 41.38 4.12
470 471 3.357444 ATTGCCCGCATGTAGCCCA 62.357 57.895 0.00 0.00 41.38 5.36
471 472 2.519302 ATTGCCCGCATGTAGCCC 60.519 61.111 0.00 0.00 41.38 5.19
472 473 1.383456 TTGATTGCCCGCATGTAGCC 61.383 55.000 0.00 0.00 41.38 3.93
473 474 0.455410 TTTGATTGCCCGCATGTAGC 59.545 50.000 0.00 0.00 40.87 3.58
474 475 2.734670 CATTTGATTGCCCGCATGTAG 58.265 47.619 0.00 0.00 0.00 2.74
475 476 1.202394 GCATTTGATTGCCCGCATGTA 60.202 47.619 0.00 0.00 36.60 2.29
476 477 0.460635 GCATTTGATTGCCCGCATGT 60.461 50.000 0.00 0.00 36.60 3.21
477 478 1.484227 CGCATTTGATTGCCCGCATG 61.484 55.000 0.00 0.00 39.52 4.06
478 479 1.227031 CGCATTTGATTGCCCGCAT 60.227 52.632 0.00 0.00 39.52 4.73
479 480 2.181273 CGCATTTGATTGCCCGCA 59.819 55.556 0.00 0.00 39.52 5.69
480 481 2.583045 CCGCATTTGATTGCCCGC 60.583 61.111 0.00 0.00 39.52 6.13
481 482 2.583045 GCCGCATTTGATTGCCCG 60.583 61.111 0.00 0.00 39.52 6.13
482 483 2.202919 GGCCGCATTTGATTGCCC 60.203 61.111 0.00 0.00 39.52 5.36
483 484 0.391528 AAAGGCCGCATTTGATTGCC 60.392 50.000 1.48 0.00 39.52 4.52
484 485 1.926510 GTAAAGGCCGCATTTGATTGC 59.073 47.619 13.09 0.00 39.29 3.56
485 486 2.184448 CGTAAAGGCCGCATTTGATTG 58.816 47.619 13.09 0.00 0.00 2.67
486 487 1.134175 CCGTAAAGGCCGCATTTGATT 59.866 47.619 13.09 0.00 0.00 2.57
487 488 0.738389 CCGTAAAGGCCGCATTTGAT 59.262 50.000 13.09 0.00 0.00 2.57
488 489 0.321741 TCCGTAAAGGCCGCATTTGA 60.322 50.000 13.09 0.00 40.77 2.69
489 490 0.738389 ATCCGTAAAGGCCGCATTTG 59.262 50.000 13.09 0.00 40.77 2.32
490 491 1.021968 GATCCGTAAAGGCCGCATTT 58.978 50.000 8.25 8.25 40.77 2.32
491 492 1.157870 CGATCCGTAAAGGCCGCATT 61.158 55.000 0.00 0.00 40.77 3.56
492 493 1.594293 CGATCCGTAAAGGCCGCAT 60.594 57.895 0.00 0.00 40.77 4.73
493 494 2.023414 ATCGATCCGTAAAGGCCGCA 62.023 55.000 0.00 0.00 40.77 5.69
494 495 1.300697 ATCGATCCGTAAAGGCCGC 60.301 57.895 0.00 0.00 40.77 6.53
495 496 0.031585 TCATCGATCCGTAAAGGCCG 59.968 55.000 0.00 0.00 40.77 6.13
496 497 2.288825 TGATCATCGATCCGTAAAGGCC 60.289 50.000 0.00 0.00 38.20 5.19
497 498 3.026630 TGATCATCGATCCGTAAAGGC 57.973 47.619 0.00 0.00 38.20 4.35
498 499 3.928992 CCATGATCATCGATCCGTAAAGG 59.071 47.826 4.86 0.00 38.20 3.11
499 500 4.560128 ACCATGATCATCGATCCGTAAAG 58.440 43.478 4.86 0.00 38.20 1.85
500 501 4.600692 ACCATGATCATCGATCCGTAAA 57.399 40.909 4.86 0.00 38.20 2.01
501 502 4.600692 AACCATGATCATCGATCCGTAA 57.399 40.909 4.86 0.00 38.20 3.18
502 503 4.038642 TGAAACCATGATCATCGATCCGTA 59.961 41.667 4.86 0.00 38.20 4.02
503 504 3.181466 TGAAACCATGATCATCGATCCGT 60.181 43.478 4.86 0.00 38.20 4.69
504 505 3.185188 GTGAAACCATGATCATCGATCCG 59.815 47.826 4.86 0.00 38.20 4.18
505 506 4.739046 GTGAAACCATGATCATCGATCC 57.261 45.455 4.86 0.00 38.20 3.36
520 521 1.351350 AGAAGGGGTAGCAGGTGAAAC 59.649 52.381 0.00 0.00 0.00 2.78
521 522 1.351017 CAGAAGGGGTAGCAGGTGAAA 59.649 52.381 0.00 0.00 0.00 2.69
522 523 0.984230 CAGAAGGGGTAGCAGGTGAA 59.016 55.000 0.00 0.00 0.00 3.18
523 524 1.553690 GCAGAAGGGGTAGCAGGTGA 61.554 60.000 0.00 0.00 0.00 4.02
524 525 1.078143 GCAGAAGGGGTAGCAGGTG 60.078 63.158 0.00 0.00 0.00 4.00
525 526 2.301738 GGCAGAAGGGGTAGCAGGT 61.302 63.158 0.00 0.00 0.00 4.00
526 527 1.852157 TTGGCAGAAGGGGTAGCAGG 61.852 60.000 0.00 0.00 0.00 4.85
527 528 0.038166 TTTGGCAGAAGGGGTAGCAG 59.962 55.000 0.00 0.00 0.00 4.24
528 529 0.480690 TTTTGGCAGAAGGGGTAGCA 59.519 50.000 0.00 0.00 0.00 3.49
529 530 1.627864 TTTTTGGCAGAAGGGGTAGC 58.372 50.000 0.00 0.00 0.00 3.58
566 567 4.016444 GGTCATGGTGCATAGAGGAAAAA 58.984 43.478 0.00 0.00 0.00 1.94
567 568 3.266772 AGGTCATGGTGCATAGAGGAAAA 59.733 43.478 0.00 0.00 0.00 2.29
568 569 2.846206 AGGTCATGGTGCATAGAGGAAA 59.154 45.455 0.00 0.00 0.00 3.13
569 570 2.481441 AGGTCATGGTGCATAGAGGAA 58.519 47.619 0.00 0.00 0.00 3.36
570 571 2.180946 AGGTCATGGTGCATAGAGGA 57.819 50.000 0.00 0.00 0.00 3.71
571 572 2.289320 GCTAGGTCATGGTGCATAGAGG 60.289 54.545 0.00 0.00 0.00 3.69
572 573 2.632028 AGCTAGGTCATGGTGCATAGAG 59.368 50.000 0.00 0.00 0.00 2.43
573 574 2.682594 AGCTAGGTCATGGTGCATAGA 58.317 47.619 0.00 0.00 0.00 1.98
574 575 3.576118 ACTAGCTAGGTCATGGTGCATAG 59.424 47.826 24.35 0.00 0.00 2.23
580 581 5.030820 AGGTAAAACTAGCTAGGTCATGGT 58.969 41.667 24.35 0.00 0.00 3.55
710 724 2.258109 AGATAAGGATAAGACCCGGCC 58.742 52.381 0.00 0.00 0.00 6.13
711 725 4.065789 CAAAGATAAGGATAAGACCCGGC 58.934 47.826 0.00 0.00 0.00 6.13
712 726 4.065789 GCAAAGATAAGGATAAGACCCGG 58.934 47.826 0.00 0.00 0.00 5.73
713 727 4.065789 GGCAAAGATAAGGATAAGACCCG 58.934 47.826 0.00 0.00 0.00 5.28
714 728 5.311844 AGGCAAAGATAAGGATAAGACCC 57.688 43.478 0.00 0.00 0.00 4.46
743 758 2.224209 TGGTCTGAGGAAACCTTTCGTC 60.224 50.000 11.77 11.77 46.60 4.20
801 848 5.488341 GTGTCTATCAAAGCTACCAAAGGA 58.512 41.667 0.00 0.00 0.00 3.36
802 849 4.636206 GGTGTCTATCAAAGCTACCAAAGG 59.364 45.833 0.00 0.00 33.51 3.11
805 852 4.901197 TGGTGTCTATCAAAGCTACCAA 57.099 40.909 0.00 0.00 37.72 3.67
806 853 5.435686 AATGGTGTCTATCAAAGCTACCA 57.564 39.130 1.87 1.87 41.85 3.25
807 854 7.171678 GTGATAATGGTGTCTATCAAAGCTACC 59.828 40.741 0.00 0.00 36.53 3.18
808 855 7.710907 TGTGATAATGGTGTCTATCAAAGCTAC 59.289 37.037 0.00 0.00 36.53 3.58
815 862 8.034804 CCGAATATGTGATAATGGTGTCTATCA 58.965 37.037 0.00 0.00 33.21 2.15
816 863 7.492669 CCCGAATATGTGATAATGGTGTCTATC 59.507 40.741 0.00 0.00 0.00 2.08
817 864 7.331026 CCCGAATATGTGATAATGGTGTCTAT 58.669 38.462 0.00 0.00 0.00 1.98
846 913 8.447924 AAGATATGAAATGACACTTCATGGAG 57.552 34.615 19.65 0.00 42.00 3.86
905 976 2.586357 GAAGCCAGGATCGCCGTC 60.586 66.667 0.00 0.00 39.96 4.79
906 977 4.162690 GGAAGCCAGGATCGCCGT 62.163 66.667 0.00 0.00 39.96 5.68
907 978 4.918201 GGGAAGCCAGGATCGCCG 62.918 72.222 0.00 0.00 39.96 6.46
908 979 4.570874 GGGGAAGCCAGGATCGCC 62.571 72.222 11.59 11.59 40.81 5.54
910 981 1.452108 GTTGGGGAAGCCAGGATCG 60.452 63.158 0.00 0.00 0.00 3.69
911 982 1.076705 GGTTGGGGAAGCCAGGATC 60.077 63.158 0.00 0.00 0.00 3.36
913 984 3.264845 GGGTTGGGGAAGCCAGGA 61.265 66.667 0.00 0.00 39.97 3.86
916 1174 0.253630 ATAGAGGGTTGGGGAAGCCA 60.254 55.000 5.86 0.00 42.56 4.75
957 1220 7.958088 AGACTTCTTTAGCTCACCCTAATATC 58.042 38.462 0.00 0.00 0.00 1.63
958 1221 7.922699 AGACTTCTTTAGCTCACCCTAATAT 57.077 36.000 0.00 0.00 0.00 1.28
959 1222 8.834004 TTAGACTTCTTTAGCTCACCCTAATA 57.166 34.615 0.00 0.00 0.00 0.98
960 1223 7.735326 TTAGACTTCTTTAGCTCACCCTAAT 57.265 36.000 0.00 0.00 0.00 1.73
961 1224 7.735326 ATTAGACTTCTTTAGCTCACCCTAA 57.265 36.000 0.00 0.00 0.00 2.69
962 1225 7.013083 CGTATTAGACTTCTTTAGCTCACCCTA 59.987 40.741 0.00 0.00 0.00 3.53
963 1226 6.183360 CGTATTAGACTTCTTTAGCTCACCCT 60.183 42.308 0.00 0.00 0.00 4.34
992 1277 5.527582 CCCTTGTACTTGTCCATTATACTGC 59.472 44.000 0.00 0.00 0.00 4.40
1019 1310 3.501458 GACGGCGCCTCATCTACCC 62.501 68.421 26.68 0.00 0.00 3.69
1021 1315 2.131294 ATCGACGGCGCCTCATCTAC 62.131 60.000 26.68 6.57 37.46 2.59
1464 1944 1.593006 GCGTAATCATCGTCCACCTTG 59.407 52.381 0.00 0.00 0.00 3.61
1644 2131 7.397221 AGAACAGATGACTAATGGATGAACAA 58.603 34.615 0.00 0.00 0.00 2.83
1647 2134 7.550551 GTGAAGAACAGATGACTAATGGATGAA 59.449 37.037 0.00 0.00 0.00 2.57
1660 2155 8.954350 AGAATATGAAAAGGTGAAGAACAGATG 58.046 33.333 0.00 0.00 0.00 2.90
1685 2182 8.578308 TTCTTTGCACATGAAGTCAATTAAAG 57.422 30.769 0.00 0.00 0.00 1.85
1693 2196 6.012658 TGGTATTTCTTTGCACATGAAGTC 57.987 37.500 0.00 0.00 0.00 3.01
1695 2198 6.038356 GGATGGTATTTCTTTGCACATGAAG 58.962 40.000 0.00 0.00 0.00 3.02
1701 2208 4.458989 TGACAGGATGGTATTTCTTTGCAC 59.541 41.667 0.00 0.00 43.62 4.57
1708 2215 8.293699 ACCTAATTTTGACAGGATGGTATTTC 57.706 34.615 0.00 0.00 43.62 2.17
1721 2228 4.675114 CAGTTTGCACGACCTAATTTTGAC 59.325 41.667 0.00 0.00 0.00 3.18
1837 2438 3.305539 GGTATGACAACGTACTGTGTGGA 60.306 47.826 0.00 0.00 38.25 4.02
1838 2439 2.991190 GGTATGACAACGTACTGTGTGG 59.009 50.000 0.00 0.00 38.25 4.17
1840 2441 4.520111 TGTAGGTATGACAACGTACTGTGT 59.480 41.667 0.00 0.00 39.99 3.72
1844 2445 5.012239 TCCTTGTAGGTATGACAACGTACT 58.988 41.667 15.26 0.00 39.99 2.73
1848 2450 5.068234 TCTTCCTTGTAGGTATGACAACG 57.932 43.478 0.00 0.00 36.53 4.10
1851 2453 6.212589 TGTTGATCTTCCTTGTAGGTATGACA 59.787 38.462 0.00 0.00 36.53 3.58
1862 2464 5.381174 TTCTGCATTGTTGATCTTCCTTG 57.619 39.130 0.00 0.00 0.00 3.61
1894 2496 9.191995 CGGGGATTTTGCACTATTAATATTTTC 57.808 33.333 0.00 0.00 0.00 2.29
1907 2509 1.212751 GCTCACGGGGATTTTGCAC 59.787 57.895 0.00 0.00 0.00 4.57
1912 2514 2.188817 AGTTAGAGCTCACGGGGATTT 58.811 47.619 17.77 0.00 0.00 2.17
1916 2518 2.588620 AGATAGTTAGAGCTCACGGGG 58.411 52.381 17.77 0.00 0.00 5.73
1943 2545 2.994995 TCGGGCGTCCTGACATGT 60.995 61.111 3.66 0.00 33.41 3.21
1944 2546 2.202797 CTCGGGCGTCCTGACATG 60.203 66.667 3.66 0.00 33.41 3.21
1945 2547 2.362503 TCTCGGGCGTCCTGACAT 60.363 61.111 3.66 0.00 33.41 3.06
1946 2548 2.838748 ATCTCTCGGGCGTCCTGACA 62.839 60.000 3.66 0.00 33.41 3.58
1947 2549 2.065906 GATCTCTCGGGCGTCCTGAC 62.066 65.000 3.66 0.00 33.41 3.51
1948 2550 1.824329 GATCTCTCGGGCGTCCTGA 60.824 63.158 3.66 5.83 36.43 3.86
1957 2568 2.015736 CCAACTTGGTGATCTCTCGG 57.984 55.000 0.00 0.00 31.35 4.63
1968 2579 3.256631 CAGGGAATCAAGAACCAACTTGG 59.743 47.826 6.24 6.24 44.84 3.61
1969 2580 3.891366 ACAGGGAATCAAGAACCAACTTG 59.109 43.478 0.00 0.00 45.73 3.16
1978 2589 1.001974 CACGGACACAGGGAATCAAGA 59.998 52.381 0.00 0.00 0.00 3.02
2035 2652 1.192428 GTAAGATGTCGAGGGGGTGT 58.808 55.000 0.00 0.00 0.00 4.16
2062 2679 2.556766 TGGTGGTCATCATGGGTAAGA 58.443 47.619 0.00 0.00 0.00 2.10
2074 2691 0.107831 CTTTCCGGTCTTGGTGGTCA 59.892 55.000 0.00 0.00 0.00 4.02
2089 2706 2.344025 ACATACGCCTTCGAACCTTTC 58.656 47.619 0.00 0.00 39.41 2.62
2146 2763 3.499918 CAGTCTCGCTCACCTTGAAATTT 59.500 43.478 0.00 0.00 0.00 1.82
2200 2817 2.190578 GCCGGGATGCTTAGCACT 59.809 61.111 9.82 0.00 43.04 4.40
2212 2829 3.072468 TCGACCCTAACTGCCGGG 61.072 66.667 2.18 0.00 46.26 5.73
2218 2835 0.892755 TGCATTCGTCGACCCTAACT 59.107 50.000 10.58 0.00 0.00 2.24
2254 2871 3.130633 CCGTTCGAATGCCATCAGATTA 58.869 45.455 12.04 0.00 0.00 1.75
2370 2987 4.923871 CCAACCCACTCTCGATAATATTCG 59.076 45.833 0.00 0.00 40.46 3.34
2605 3222 6.925011 CGTATAGACGGTCTGCAAGAGTGTA 61.925 48.000 20.58 0.00 42.01 2.90
2672 3289 3.681034 TGTTTTGGAACCGACGGAGTAAA 60.681 43.478 23.38 12.74 36.24 2.01
2673 3290 2.158986 TGTTTTGGAACCGACGGAGTAA 60.159 45.455 23.38 7.19 36.24 2.24
2800 3417 6.146837 TCACAAATCACAAACAACAAAAGGTG 59.853 34.615 0.00 0.00 0.00 4.00
2801 3418 6.147000 GTCACAAATCACAAACAACAAAAGGT 59.853 34.615 0.00 0.00 0.00 3.50
2815 3432 4.658071 ACAACTTTCGTGTCACAAATCAC 58.342 39.130 3.42 0.00 0.00 3.06
2822 3439 7.380320 CAACAATTAAACAACTTTCGTGTCAC 58.620 34.615 0.00 0.00 0.00 3.67
2823 3440 6.528423 CCAACAATTAAACAACTTTCGTGTCA 59.472 34.615 0.00 0.00 0.00 3.58
2824 3441 6.528774 ACCAACAATTAAACAACTTTCGTGTC 59.471 34.615 0.00 0.00 0.00 3.67
2826 3443 6.528423 TCACCAACAATTAAACAACTTTCGTG 59.472 34.615 0.00 0.00 0.00 4.35
2827 3444 6.622549 TCACCAACAATTAAACAACTTTCGT 58.377 32.000 0.00 0.00 0.00 3.85
2828 3445 7.513190 TTCACCAACAATTAAACAACTTTCG 57.487 32.000 0.00 0.00 0.00 3.46
2875 3493 5.180492 CCTTCGTTTCAAAATACCAGCTGTA 59.820 40.000 13.81 5.74 0.00 2.74
2879 3497 3.504520 TCCCTTCGTTTCAAAATACCAGC 59.495 43.478 0.00 0.00 0.00 4.85
2910 3528 2.108168 TGCTCATAGTAGGACACCCAC 58.892 52.381 0.00 0.00 33.88 4.61
3009 3627 4.463070 AGGCTTTTGAATTTGTTGCCAAT 58.537 34.783 0.00 0.00 41.12 3.16
3036 3654 5.977129 CCAACGAGTTAACAAGAGCATTTTT 59.023 36.000 8.61 0.00 0.00 1.94
3167 3786 0.599558 CGGAAACTCGGGTCACAGTA 59.400 55.000 0.00 0.00 0.00 2.74
3168 3787 1.366366 CGGAAACTCGGGTCACAGT 59.634 57.895 0.00 0.00 0.00 3.55
3169 3788 0.599558 TACGGAAACTCGGGTCACAG 59.400 55.000 0.00 0.00 0.00 3.66
3242 3861 9.700831 AATATATTTGGTGCCTAGGAAATATCC 57.299 33.333 21.08 7.98 46.98 2.59
3292 3911 9.773328 CGTTGATATTGAAGTTCACATAATGTT 57.227 29.630 4.68 0.00 0.00 2.71
3300 3919 7.399523 GTGTATCCGTTGATATTGAAGTTCAC 58.600 38.462 4.68 0.00 35.94 3.18
3307 3926 5.238432 GCATTGGTGTATCCGTTGATATTGA 59.762 40.000 0.00 0.00 35.94 2.57
3429 4048 3.018423 AGAGACAAACCAAAGCAACCT 57.982 42.857 0.00 0.00 0.00 3.50
3432 4051 4.272504 CGAGTTAGAGACAAACCAAAGCAA 59.727 41.667 0.00 0.00 0.00 3.91
3436 4055 4.411256 ACCGAGTTAGAGACAAACCAAA 57.589 40.909 0.00 0.00 0.00 3.28
3439 4058 3.725490 ACAACCGAGTTAGAGACAAACC 58.275 45.455 0.00 0.00 0.00 3.27
3441 4060 4.569162 CACAACAACCGAGTTAGAGACAAA 59.431 41.667 0.00 0.00 0.00 2.83
3445 4064 3.382227 TCACACAACAACCGAGTTAGAGA 59.618 43.478 0.00 0.00 0.00 3.10
3451 4070 2.325583 ATGTCACACAACAACCGAGT 57.674 45.000 0.00 0.00 31.81 4.18
3518 4137 7.328493 GGGAGTGCAACAAATTGTTATTAGAAC 59.672 37.037 11.33 4.17 38.77 3.01
3528 4147 2.624838 AGTGAGGGAGTGCAACAAATTG 59.375 45.455 0.00 0.00 41.43 2.32
3533 4152 1.618837 GTCTAGTGAGGGAGTGCAACA 59.381 52.381 0.00 0.00 41.43 3.33
3566 4185 7.012327 CGTTGATTCCACAAATACATATGGACT 59.988 37.037 7.80 0.00 40.96 3.85
3568 4187 7.011950 GTCGTTGATTCCACAAATACATATGGA 59.988 37.037 7.80 0.00 39.50 3.41
3575 4194 7.867445 AATTTGTCGTTGATTCCACAAATAC 57.133 32.000 8.81 0.00 44.76 1.89
3636 4255 3.181423 TGTTGGCCAGAAAATTAGAGGGT 60.181 43.478 5.11 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.