Multiple sequence alignment - TraesCS2B01G140400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G140400 chr2B 100.000 2824 0 0 1 2824 106963748 106960925 0.000000e+00 5216.0
1 TraesCS2B01G140400 chr2B 82.984 382 55 3 975 1356 107789223 107789594 1.250000e-88 337.0
2 TraesCS2B01G140400 chr2B 81.863 408 52 15 971 1374 107793260 107793649 9.760000e-85 324.0
3 TraesCS2B01G140400 chr2B 84.387 269 28 6 2495 2751 107795308 107795574 4.670000e-63 252.0
4 TraesCS2B01G140400 chr2B 85.093 161 22 1 2260 2418 107022837 107022677 2.250000e-36 163.0
5 TraesCS2B01G140400 chr2B 78.505 214 44 2 18 230 184874161 184873949 3.790000e-29 139.0
6 TraesCS2B01G140400 chr2B 92.727 55 4 0 2756 2810 583427959 583428013 2.330000e-11 80.5
7 TraesCS2B01G140400 chr2D 89.734 828 66 10 1944 2761 70634771 70635589 0.000000e+00 1040.0
8 TraesCS2B01G140400 chr2D 77.588 1584 259 61 974 2516 71594224 71595752 0.000000e+00 870.0
9 TraesCS2B01G140400 chr2D 85.478 785 55 13 673 1404 70632973 70633751 0.000000e+00 763.0
10 TraesCS2B01G140400 chr2D 92.408 461 29 2 2305 2761 70636922 70637380 0.000000e+00 652.0
11 TraesCS2B01G140400 chr2D 89.792 480 34 10 1417 1890 70633811 70634281 4.030000e-168 601.0
12 TraesCS2B01G140400 chr2D 87.089 426 43 7 976 1401 71399406 71399819 3.290000e-129 472.0
13 TraesCS2B01G140400 chr2D 80.113 709 80 28 1475 2131 71399961 71400660 3.290000e-129 472.0
14 TraesCS2B01G140400 chr2D 80.714 280 54 0 1121 1400 71578484 71578763 4.740000e-53 219.0
15 TraesCS2B01G140400 chr2D 79.200 250 35 9 1950 2187 70672764 70672520 1.050000e-34 158.0
16 TraesCS2B01G140400 chr2A 89.503 724 61 6 2047 2761 70150803 70150086 0.000000e+00 902.0
17 TraesCS2B01G140400 chr2A 85.870 736 42 23 688 1404 70153433 70152741 0.000000e+00 726.0
18 TraesCS2B01G140400 chr2A 87.132 645 42 22 1451 2058 70152674 70152034 0.000000e+00 693.0
19 TraesCS2B01G140400 chr2A 79.232 573 96 15 1947 2516 70650423 70650975 7.380000e-101 377.0
20 TraesCS2B01G140400 chr2A 81.699 459 58 12 1475 1910 70291284 70290829 2.670000e-95 359.0
21 TraesCS2B01G140400 chr2A 80.278 431 50 17 972 1400 70156776 70156379 2.750000e-75 292.0
22 TraesCS2B01G140400 chr2A 79.570 279 57 0 1122 1400 70644150 70644428 1.720000e-47 200.0
23 TraesCS2B01G140400 chr2A 91.045 67 4 2 2372 2437 70154789 70154724 3.870000e-14 89.8
24 TraesCS2B01G140400 chr7D 91.837 245 19 1 403 647 577218314 577218557 9.690000e-90 340.0
25 TraesCS2B01G140400 chr7D 92.340 235 17 1 413 646 598243206 598242972 1.620000e-87 333.0
26 TraesCS2B01G140400 chr7D 92.275 233 18 0 416 648 626566392 626566160 5.830000e-87 331.0
27 TraesCS2B01G140400 chr7D 90.726 248 22 1 403 650 495329950 495330196 2.100000e-86 329.0
28 TraesCS2B01G140400 chr7D 89.883 257 23 3 403 658 597920945 597921199 7.540000e-86 327.0
29 TraesCS2B01G140400 chr7D 89.956 229 23 0 1 229 501841013 501841241 2.130000e-76 296.0
30 TraesCS2B01G140400 chr1D 91.286 241 21 0 416 656 83826109 83826349 2.100000e-86 329.0
31 TraesCS2B01G140400 chr1D 86.486 74 5 3 2741 2810 203321331 203321403 3.020000e-10 76.8
32 TraesCS2B01G140400 chr6D 90.984 244 21 1 403 646 373278873 373279115 7.540000e-86 327.0
33 TraesCS2B01G140400 chr6D 90.612 245 21 2 403 647 302038148 302037906 9.760000e-85 324.0
34 TraesCS2B01G140400 chr7A 88.192 271 27 5 403 672 105401051 105400785 4.540000e-83 318.0
35 TraesCS2B01G140400 chr5D 86.611 239 30 2 4 240 465978603 465978365 2.160000e-66 263.0
36 TraesCS2B01G140400 chr5D 88.235 68 6 2 164 230 465981858 465981924 2.330000e-11 80.5
37 TraesCS2B01G140400 chr5D 92.308 52 4 0 2759 2810 410424020 410424071 1.080000e-09 75.0
38 TraesCS2B01G140400 chr3D 94.444 54 1 2 179 231 327713806 327713754 6.480000e-12 82.4
39 TraesCS2B01G140400 chr5B 94.231 52 3 0 2759 2810 521147455 521147404 2.330000e-11 80.5
40 TraesCS2B01G140400 chr3A 91.379 58 5 0 2753 2810 12489799 12489856 2.330000e-11 80.5
41 TraesCS2B01G140400 chr3A 90.909 55 5 0 2759 2813 613161531 613161477 1.080000e-09 75.0
42 TraesCS2B01G140400 chr1A 90.000 60 6 0 2751 2810 313267342 313267401 8.390000e-11 78.7
43 TraesCS2B01G140400 chr1A 92.308 52 4 0 2759 2810 20856292 20856343 1.080000e-09 75.0
44 TraesCS2B01G140400 chr7B 88.889 63 5 2 2753 2814 675217557 675217496 3.020000e-10 76.8
45 TraesCS2B01G140400 chr1B 92.857 42 3 0 363 404 133669618 133669659 8.450000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G140400 chr2B 106960925 106963748 2823 True 5216.000000 5216 100.0000 1 2824 1 chr2B.!!$R1 2823
1 TraesCS2B01G140400 chr2B 107789223 107795574 6351 False 304.333333 337 83.0780 971 2751 3 chr2B.!!$F2 1780
2 TraesCS2B01G140400 chr2D 71594224 71595752 1528 False 870.000000 870 77.5880 974 2516 1 chr2D.!!$F2 1542
3 TraesCS2B01G140400 chr2D 70632973 70637380 4407 False 764.000000 1040 89.3530 673 2761 4 chr2D.!!$F3 2088
4 TraesCS2B01G140400 chr2D 71399406 71400660 1254 False 472.000000 472 83.6010 976 2131 2 chr2D.!!$F4 1155
5 TraesCS2B01G140400 chr2A 70150086 70156776 6690 True 540.560000 902 86.7656 688 2761 5 chr2A.!!$R2 2073
6 TraesCS2B01G140400 chr2A 70650423 70650975 552 False 377.000000 377 79.2320 1947 2516 1 chr2A.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.033109 TCTTCCAGCTCGATCTCCCA 60.033 55.0 0.00 0.0 0.00 4.37 F
339 340 0.038744 CCTCTCATGGTGGCCAAAGT 59.961 55.0 7.24 0.0 36.95 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 4456 0.947960 TCGCGTGCATTCCAAAGAAA 59.052 45.000 5.77 0.0 35.09 2.52 R
2138 6622 1.002134 AACAATCACAGGGGGCGAG 60.002 57.895 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.094508 TGCTGTGAAAATCTAAAGTTGTCAA 57.905 32.000 0.00 0.00 0.00 3.18
27 28 7.195646 TGCTGTGAAAATCTAAAGTTGTCAAG 58.804 34.615 0.00 0.00 0.00 3.02
28 29 7.066887 TGCTGTGAAAATCTAAAGTTGTCAAGA 59.933 33.333 0.00 0.00 0.00 3.02
29 30 8.078596 GCTGTGAAAATCTAAAGTTGTCAAGAT 58.921 33.333 0.00 0.00 0.00 2.40
33 34 9.130661 TGAAAATCTAAAGTTGTCAAGATTGGA 57.869 29.630 0.00 0.00 38.39 3.53
39 40 9.605275 TCTAAAGTTGTCAAGATTGGATATGAG 57.395 33.333 0.00 0.00 0.00 2.90
40 41 7.636150 AAAGTTGTCAAGATTGGATATGAGG 57.364 36.000 0.00 0.00 0.00 3.86
41 42 6.566079 AGTTGTCAAGATTGGATATGAGGA 57.434 37.500 0.00 0.00 0.00 3.71
43 44 7.052873 AGTTGTCAAGATTGGATATGAGGAAG 58.947 38.462 0.00 0.00 0.00 3.46
44 45 5.371526 TGTCAAGATTGGATATGAGGAAGC 58.628 41.667 0.00 0.00 0.00 3.86
45 46 5.131642 TGTCAAGATTGGATATGAGGAAGCT 59.868 40.000 0.00 0.00 0.00 3.74
48 49 3.330110 AGATTGGATATGAGGAAGCTGGG 59.670 47.826 0.00 0.00 0.00 4.45
50 51 0.695347 GGATATGAGGAAGCTGGGGG 59.305 60.000 0.00 0.00 0.00 5.40
53 54 0.253160 TATGAGGAAGCTGGGGGTGT 60.253 55.000 0.00 0.00 0.00 4.16
54 55 1.142688 ATGAGGAAGCTGGGGGTGTT 61.143 55.000 0.00 0.00 0.00 3.32
55 56 0.474854 TGAGGAAGCTGGGGGTGTTA 60.475 55.000 0.00 0.00 0.00 2.41
56 57 0.035343 GAGGAAGCTGGGGGTGTTAC 60.035 60.000 0.00 0.00 0.00 2.50
57 58 0.770557 AGGAAGCTGGGGGTGTTACA 60.771 55.000 0.00 0.00 0.00 2.41
59 60 0.322546 GAAGCTGGGGGTGTTACAGG 60.323 60.000 0.00 0.00 32.98 4.00
60 61 0.770557 AAGCTGGGGGTGTTACAGGA 60.771 55.000 0.00 0.00 32.98 3.86
61 62 0.770557 AGCTGGGGGTGTTACAGGAA 60.771 55.000 0.00 0.00 32.98 3.36
62 63 0.111639 GCTGGGGGTGTTACAGGAAA 59.888 55.000 0.00 0.00 32.98 3.13
63 64 1.479757 GCTGGGGGTGTTACAGGAAAA 60.480 52.381 0.00 0.00 32.98 2.29
65 66 1.146152 TGGGGGTGTTACAGGAAAAGG 59.854 52.381 0.00 0.00 0.00 3.11
66 67 1.146359 GGGGGTGTTACAGGAAAAGGT 59.854 52.381 0.00 0.00 0.00 3.50
67 68 2.511659 GGGGTGTTACAGGAAAAGGTC 58.488 52.381 0.00 0.00 0.00 3.85
68 69 2.158579 GGGGTGTTACAGGAAAAGGTCA 60.159 50.000 0.00 0.00 0.00 4.02
69 70 3.499745 GGGGTGTTACAGGAAAAGGTCAT 60.500 47.826 0.00 0.00 0.00 3.06
70 71 3.506067 GGGTGTTACAGGAAAAGGTCATG 59.494 47.826 0.00 0.00 43.83 3.07
80 81 7.693969 CAGGAAAAGGTCATGTTTAATCTCT 57.306 36.000 0.00 0.00 33.24 3.10
82 83 7.391554 CAGGAAAAGGTCATGTTTAATCTCTGA 59.608 37.037 0.00 0.00 33.24 3.27
83 84 7.391833 AGGAAAAGGTCATGTTTAATCTCTGAC 59.608 37.037 0.00 9.50 36.38 3.51
86 87 5.104259 GGTCATGTTTAATCTCTGACCCT 57.896 43.478 18.57 0.00 46.57 4.34
87 88 4.878397 GGTCATGTTTAATCTCTGACCCTG 59.122 45.833 18.57 0.00 46.57 4.45
88 89 5.338381 GGTCATGTTTAATCTCTGACCCTGA 60.338 44.000 18.57 1.65 46.57 3.86
91 92 6.667848 TCATGTTTAATCTCTGACCCTGAGTA 59.332 38.462 0.00 0.00 32.50 2.59
93 94 5.422331 TGTTTAATCTCTGACCCTGAGTAGG 59.578 44.000 0.00 0.00 44.18 3.18
115 116 5.476091 GGGGGTTTTCATCAAATGTACAA 57.524 39.130 0.00 0.00 0.00 2.41
116 117 6.048732 GGGGGTTTTCATCAAATGTACAAT 57.951 37.500 0.00 0.00 0.00 2.71
117 118 7.176589 GGGGGTTTTCATCAAATGTACAATA 57.823 36.000 0.00 0.00 0.00 1.90
118 119 7.616313 GGGGGTTTTCATCAAATGTACAATAA 58.384 34.615 0.00 0.00 0.00 1.40
119 120 7.763985 GGGGGTTTTCATCAAATGTACAATAAG 59.236 37.037 0.00 0.00 0.00 1.73
124 125 6.449635 TCATCAAATGTACAATAAGTGGCC 57.550 37.500 0.00 0.00 0.00 5.36
125 126 6.186957 TCATCAAATGTACAATAAGTGGCCT 58.813 36.000 3.32 0.00 0.00 5.19
126 127 5.895636 TCAAATGTACAATAAGTGGCCTG 57.104 39.130 3.32 0.00 0.00 4.85
127 128 5.565509 TCAAATGTACAATAAGTGGCCTGA 58.434 37.500 3.32 0.00 0.00 3.86
131 132 1.668826 ACAATAAGTGGCCTGAGGGA 58.331 50.000 3.32 0.00 33.58 4.20
132 133 1.282157 ACAATAAGTGGCCTGAGGGAC 59.718 52.381 3.32 0.00 42.24 4.46
134 135 0.044855 ATAAGTGGCCTGAGGGACCT 59.955 55.000 3.32 0.00 40.82 3.85
135 136 0.617820 TAAGTGGCCTGAGGGACCTC 60.618 60.000 11.44 11.44 40.82 3.85
137 138 3.940480 TGGCCTGAGGGACCTCCA 61.940 66.667 15.40 4.26 40.82 3.86
139 140 2.003548 GGCCTGAGGGACCTCCATT 61.004 63.158 15.40 0.00 42.09 3.16
140 141 1.529309 GCCTGAGGGACCTCCATTC 59.471 63.158 15.40 0.00 42.09 2.67
141 142 1.988982 GCCTGAGGGACCTCCATTCC 61.989 65.000 15.40 0.00 42.09 3.01
142 143 0.327000 CCTGAGGGACCTCCATTCCT 60.327 60.000 15.40 0.00 42.09 3.36
143 144 1.062121 CCTGAGGGACCTCCATTCCTA 60.062 57.143 15.40 0.00 42.09 2.94
146 147 2.524440 TGAGGGACCTCCATTCCTATCT 59.476 50.000 15.40 0.00 42.09 1.98
147 148 2.903135 GAGGGACCTCCATTCCTATCTG 59.097 54.545 7.13 0.00 37.11 2.90
148 149 2.251338 AGGGACCTCCATTCCTATCTGT 59.749 50.000 0.00 0.00 38.24 3.41
149 150 3.471306 AGGGACCTCCATTCCTATCTGTA 59.529 47.826 0.00 0.00 38.24 2.74
150 151 3.579151 GGGACCTCCATTCCTATCTGTAC 59.421 52.174 0.00 0.00 37.91 2.90
151 152 3.579151 GGACCTCCATTCCTATCTGTACC 59.421 52.174 0.00 0.00 35.64 3.34
153 154 3.231818 CCTCCATTCCTATCTGTACCGT 58.768 50.000 0.00 0.00 0.00 4.83
154 155 3.256136 CCTCCATTCCTATCTGTACCGTC 59.744 52.174 0.00 0.00 0.00 4.79
155 156 3.228453 TCCATTCCTATCTGTACCGTCC 58.772 50.000 0.00 0.00 0.00 4.79
156 157 2.963101 CCATTCCTATCTGTACCGTCCA 59.037 50.000 0.00 0.00 0.00 4.02
157 158 3.578716 CCATTCCTATCTGTACCGTCCAT 59.421 47.826 0.00 0.00 0.00 3.41
158 159 4.040461 CCATTCCTATCTGTACCGTCCATT 59.960 45.833 0.00 0.00 0.00 3.16
160 161 5.687166 TTCCTATCTGTACCGTCCATTTT 57.313 39.130 0.00 0.00 0.00 1.82
161 162 5.272283 TCCTATCTGTACCGTCCATTTTC 57.728 43.478 0.00 0.00 0.00 2.29
162 163 4.712829 TCCTATCTGTACCGTCCATTTTCA 59.287 41.667 0.00 0.00 0.00 2.69
163 164 5.188163 TCCTATCTGTACCGTCCATTTTCAA 59.812 40.000 0.00 0.00 0.00 2.69
165 166 6.202954 CCTATCTGTACCGTCCATTTTCAATC 59.797 42.308 0.00 0.00 0.00 2.67
167 168 4.006989 CTGTACCGTCCATTTTCAATCCA 58.993 43.478 0.00 0.00 0.00 3.41
168 169 4.399219 TGTACCGTCCATTTTCAATCCAA 58.601 39.130 0.00 0.00 0.00 3.53
169 170 5.013547 TGTACCGTCCATTTTCAATCCAAT 58.986 37.500 0.00 0.00 0.00 3.16
170 171 4.454728 ACCGTCCATTTTCAATCCAATG 57.545 40.909 0.00 0.00 0.00 2.82
173 174 3.368220 CGTCCATTTTCAATCCAATGGCA 60.368 43.478 6.11 0.00 46.38 4.92
175 176 5.451659 CGTCCATTTTCAATCCAATGGCATA 60.452 40.000 0.00 0.00 46.38 3.14
177 178 5.070714 TCCATTTTCAATCCAATGGCATAGG 59.929 40.000 0.00 0.00 46.38 2.57
178 179 5.070714 CCATTTTCAATCCAATGGCATAGGA 59.929 40.000 0.00 0.00 42.31 2.94
179 180 6.239772 CCATTTTCAATCCAATGGCATAGGAT 60.240 38.462 0.00 0.00 42.31 3.24
181 182 4.038271 TCAATCCAATGGCATAGGATCC 57.962 45.455 2.48 2.48 41.15 3.36
182 183 3.659195 TCAATCCAATGGCATAGGATCCT 59.341 43.478 20.48 20.48 41.15 3.24
183 184 4.106825 TCAATCCAATGGCATAGGATCCTT 59.893 41.667 22.03 5.03 41.15 3.36
184 185 4.754411 ATCCAATGGCATAGGATCCTTT 57.246 40.909 22.03 9.68 37.61 3.11
186 187 4.882559 TCCAATGGCATAGGATCCTTTTT 58.117 39.130 22.03 2.34 0.00 1.94
187 188 4.895297 TCCAATGGCATAGGATCCTTTTTC 59.105 41.667 22.03 8.62 0.00 2.29
188 189 4.897670 CCAATGGCATAGGATCCTTTTTCT 59.102 41.667 22.03 0.00 0.00 2.52
189 190 6.070656 CCAATGGCATAGGATCCTTTTTCTA 58.929 40.000 22.03 0.00 0.00 2.10
190 191 6.723052 CCAATGGCATAGGATCCTTTTTCTAT 59.277 38.462 22.03 2.64 0.00 1.98
191 192 7.234166 CCAATGGCATAGGATCCTTTTTCTATT 59.766 37.037 22.03 12.94 0.00 1.73
193 194 7.154191 TGGCATAGGATCCTTTTTCTATTCT 57.846 36.000 22.03 0.00 0.00 2.40
196 197 7.941790 GGCATAGGATCCTTTTTCTATTCTTCT 59.058 37.037 22.03 0.00 0.00 2.85
200 201 7.807198 AGGATCCTTTTTCTATTCTTCTACCC 58.193 38.462 9.02 0.00 0.00 3.69
201 202 7.629721 AGGATCCTTTTTCTATTCTTCTACCCT 59.370 37.037 9.02 0.00 0.00 4.34
202 203 8.935741 GGATCCTTTTTCTATTCTTCTACCCTA 58.064 37.037 3.84 0.00 0.00 3.53
205 206 8.265764 TCCTTTTTCTATTCTTCTACCCTAAGC 58.734 37.037 0.00 0.00 0.00 3.09
206 207 7.499563 CCTTTTTCTATTCTTCTACCCTAAGCC 59.500 40.741 0.00 0.00 0.00 4.35
208 209 5.152306 TCTATTCTTCTACCCTAAGCCCA 57.848 43.478 0.00 0.00 0.00 5.36
210 211 3.484953 TTCTTCTACCCTAAGCCCAGA 57.515 47.619 0.00 0.00 0.00 3.86
211 212 3.708236 TCTTCTACCCTAAGCCCAGAT 57.292 47.619 0.00 0.00 0.00 2.90
212 213 4.008916 TCTTCTACCCTAAGCCCAGATT 57.991 45.455 0.00 0.00 0.00 2.40
213 214 3.967987 TCTTCTACCCTAAGCCCAGATTC 59.032 47.826 0.00 0.00 0.00 2.52
214 215 3.708236 TCTACCCTAAGCCCAGATTCT 57.292 47.619 0.00 0.00 0.00 2.40
218 219 3.252351 ACCCTAAGCCCAGATTCTATCC 58.748 50.000 0.00 0.00 0.00 2.59
220 221 4.109765 ACCCTAAGCCCAGATTCTATCCTA 59.890 45.833 0.00 0.00 0.00 2.94
222 223 5.337788 CCTAAGCCCAGATTCTATCCTAGT 58.662 45.833 0.00 0.00 0.00 2.57
223 224 5.420739 CCTAAGCCCAGATTCTATCCTAGTC 59.579 48.000 0.00 0.00 0.00 2.59
225 226 2.835156 GCCCAGATTCTATCCTAGTCCC 59.165 54.545 0.00 0.00 0.00 4.46
226 227 3.503227 GCCCAGATTCTATCCTAGTCCCT 60.503 52.174 0.00 0.00 0.00 4.20
228 229 4.349365 CCAGATTCTATCCTAGTCCCTCC 58.651 52.174 0.00 0.00 0.00 4.30
230 231 3.338519 AGATTCTATCCTAGTCCCTCCCC 59.661 52.174 0.00 0.00 0.00 4.81
231 232 1.073931 TCTATCCTAGTCCCTCCCCG 58.926 60.000 0.00 0.00 0.00 5.73
232 233 0.778720 CTATCCTAGTCCCTCCCCGT 59.221 60.000 0.00 0.00 0.00 5.28
234 235 1.238615 ATCCTAGTCCCTCCCCGTTA 58.761 55.000 0.00 0.00 0.00 3.18
235 236 1.238615 TCCTAGTCCCTCCCCGTTAT 58.761 55.000 0.00 0.00 0.00 1.89
236 237 1.146566 TCCTAGTCCCTCCCCGTTATC 59.853 57.143 0.00 0.00 0.00 1.75
237 238 1.147399 CCTAGTCCCTCCCCGTTATCT 59.853 57.143 0.00 0.00 0.00 1.98
238 239 2.425975 CCTAGTCCCTCCCCGTTATCTT 60.426 54.545 0.00 0.00 0.00 2.40
239 240 1.790818 AGTCCCTCCCCGTTATCTTC 58.209 55.000 0.00 0.00 0.00 2.87
240 241 1.291335 AGTCCCTCCCCGTTATCTTCT 59.709 52.381 0.00 0.00 0.00 2.85
241 242 1.687660 GTCCCTCCCCGTTATCTTCTC 59.312 57.143 0.00 0.00 0.00 2.87
242 243 1.574339 TCCCTCCCCGTTATCTTCTCT 59.426 52.381 0.00 0.00 0.00 3.10
243 244 1.964933 CCCTCCCCGTTATCTTCTCTC 59.035 57.143 0.00 0.00 0.00 3.20
247 248 2.514582 TCCCCGTTATCTTCTCTCCTCT 59.485 50.000 0.00 0.00 0.00 3.69
248 249 2.888414 CCCCGTTATCTTCTCTCCTCTC 59.112 54.545 0.00 0.00 0.00 3.20
249 250 3.556999 CCCGTTATCTTCTCTCCTCTCA 58.443 50.000 0.00 0.00 0.00 3.27
250 251 4.148838 CCCGTTATCTTCTCTCCTCTCAT 58.851 47.826 0.00 0.00 0.00 2.90
252 253 5.070001 CCGTTATCTTCTCTCCTCTCATCT 58.930 45.833 0.00 0.00 0.00 2.90
253 254 5.534654 CCGTTATCTTCTCTCCTCTCATCTT 59.465 44.000 0.00 0.00 0.00 2.40
254 255 6.293955 CCGTTATCTTCTCTCCTCTCATCTTC 60.294 46.154 0.00 0.00 0.00 2.87
255 256 6.293955 CGTTATCTTCTCTCCTCTCATCTTCC 60.294 46.154 0.00 0.00 0.00 3.46
256 257 4.599720 TCTTCTCTCCTCTCATCTTCCA 57.400 45.455 0.00 0.00 0.00 3.53
257 258 4.535781 TCTTCTCTCCTCTCATCTTCCAG 58.464 47.826 0.00 0.00 0.00 3.86
258 259 2.665165 TCTCTCCTCTCATCTTCCAGC 58.335 52.381 0.00 0.00 0.00 4.85
259 260 2.244510 TCTCTCCTCTCATCTTCCAGCT 59.755 50.000 0.00 0.00 0.00 4.24
260 261 2.624838 CTCTCCTCTCATCTTCCAGCTC 59.375 54.545 0.00 0.00 0.00 4.09
261 262 1.337703 CTCCTCTCATCTTCCAGCTCG 59.662 57.143 0.00 0.00 0.00 5.03
262 263 1.064389 TCCTCTCATCTTCCAGCTCGA 60.064 52.381 0.00 0.00 0.00 4.04
263 264 1.962807 CCTCTCATCTTCCAGCTCGAT 59.037 52.381 0.00 0.00 0.00 3.59
264 265 2.030007 CCTCTCATCTTCCAGCTCGATC 60.030 54.545 0.00 0.00 0.00 3.69
265 266 2.886523 CTCTCATCTTCCAGCTCGATCT 59.113 50.000 0.00 0.00 0.00 2.75
267 268 1.959985 TCATCTTCCAGCTCGATCTCC 59.040 52.381 0.00 0.00 0.00 3.71
268 269 1.000731 CATCTTCCAGCTCGATCTCCC 59.999 57.143 0.00 0.00 0.00 4.30
269 270 0.033109 TCTTCCAGCTCGATCTCCCA 60.033 55.000 0.00 0.00 0.00 4.37
270 271 0.388659 CTTCCAGCTCGATCTCCCAG 59.611 60.000 0.00 0.00 0.00 4.45
271 272 1.680522 TTCCAGCTCGATCTCCCAGC 61.681 60.000 0.00 0.00 0.00 4.85
272 273 2.027314 CAGCTCGATCTCCCAGCG 59.973 66.667 0.00 0.00 38.26 5.18
273 274 2.124109 AGCTCGATCTCCCAGCGA 60.124 61.111 0.00 0.00 38.26 4.93
274 275 1.530419 AGCTCGATCTCCCAGCGAT 60.530 57.895 0.00 0.00 38.26 4.58
275 276 1.372748 GCTCGATCTCCCAGCGATG 60.373 63.158 0.00 0.00 33.20 3.84
278 279 2.356793 GATCTCCCAGCGATGCGG 60.357 66.667 0.00 0.00 0.00 5.69
281 282 4.147449 CTCCCAGCGATGCGGACA 62.147 66.667 6.77 0.00 0.00 4.02
282 283 3.451556 CTCCCAGCGATGCGGACAT 62.452 63.158 6.77 0.00 39.98 3.06
283 284 2.087462 CTCCCAGCGATGCGGACATA 62.087 60.000 6.77 0.00 36.35 2.29
284 285 1.956170 CCCAGCGATGCGGACATAC 60.956 63.158 0.00 0.00 36.35 2.39
285 286 1.227234 CCAGCGATGCGGACATACA 60.227 57.895 0.00 0.00 36.35 2.29
286 287 1.217585 CCAGCGATGCGGACATACAG 61.218 60.000 0.00 0.00 36.35 2.74
287 288 0.249031 CAGCGATGCGGACATACAGA 60.249 55.000 0.00 0.00 36.35 3.41
288 289 0.249073 AGCGATGCGGACATACAGAC 60.249 55.000 0.00 0.00 36.35 3.51
290 291 0.385751 CGATGCGGACATACAGACCT 59.614 55.000 0.00 0.00 36.35 3.85
291 292 1.600663 CGATGCGGACATACAGACCTC 60.601 57.143 0.00 0.00 36.35 3.85
293 294 0.678684 TGCGGACATACAGACCTCGA 60.679 55.000 0.00 0.00 0.00 4.04
294 295 0.454600 GCGGACATACAGACCTCGAA 59.545 55.000 0.00 0.00 0.00 3.71
295 296 1.135199 GCGGACATACAGACCTCGAAA 60.135 52.381 0.00 0.00 0.00 3.46
296 297 2.673043 GCGGACATACAGACCTCGAAAA 60.673 50.000 0.00 0.00 0.00 2.29
297 298 3.581755 CGGACATACAGACCTCGAAAAA 58.418 45.455 0.00 0.00 0.00 1.94
316 317 4.655762 AAAAGAACAAAGCTTGACTCCC 57.344 40.909 0.00 0.00 0.00 4.30
318 319 3.133141 AGAACAAAGCTTGACTCCCTC 57.867 47.619 0.00 0.00 0.00 4.30
319 320 1.801178 GAACAAAGCTTGACTCCCTCG 59.199 52.381 0.00 0.00 0.00 4.63
320 321 0.603975 ACAAAGCTTGACTCCCTCGC 60.604 55.000 0.00 0.00 0.00 5.03
321 322 1.003233 AAAGCTTGACTCCCTCGCC 60.003 57.895 0.00 0.00 0.00 5.54
322 323 1.484444 AAAGCTTGACTCCCTCGCCT 61.484 55.000 0.00 0.00 0.00 5.52
323 324 1.893919 AAGCTTGACTCCCTCGCCTC 61.894 60.000 0.00 0.00 0.00 4.70
324 325 2.355193 GCTTGACTCCCTCGCCTCT 61.355 63.158 0.00 0.00 0.00 3.69
325 326 1.813192 CTTGACTCCCTCGCCTCTC 59.187 63.158 0.00 0.00 0.00 3.20
326 327 0.967887 CTTGACTCCCTCGCCTCTCA 60.968 60.000 0.00 0.00 0.00 3.27
328 329 1.039785 TGACTCCCTCGCCTCTCATG 61.040 60.000 0.00 0.00 0.00 3.07
330 331 1.760086 CTCCCTCGCCTCTCATGGT 60.760 63.158 0.00 0.00 0.00 3.55
331 332 2.025767 CTCCCTCGCCTCTCATGGTG 62.026 65.000 0.00 0.00 38.85 4.17
336 337 2.356278 GCCTCTCATGGTGGCCAA 59.644 61.111 7.24 0.00 45.77 4.52
337 338 1.304381 GCCTCTCATGGTGGCCAAA 60.304 57.895 7.24 0.00 45.77 3.28
338 339 1.318158 GCCTCTCATGGTGGCCAAAG 61.318 60.000 7.24 0.00 45.77 2.77
339 340 0.038744 CCTCTCATGGTGGCCAAAGT 59.961 55.000 7.24 0.00 36.95 2.66
340 341 1.281867 CCTCTCATGGTGGCCAAAGTA 59.718 52.381 7.24 0.00 36.95 2.24
342 343 1.985159 TCTCATGGTGGCCAAAGTAGT 59.015 47.619 7.24 0.00 36.95 2.73
346 347 0.179004 TGGTGGCCAAAGTAGTGTGG 60.179 55.000 7.24 1.89 38.00 4.17
348 349 0.893727 GTGGCCAAAGTAGTGTGGGG 60.894 60.000 7.24 0.00 35.28 4.96
350 351 1.458927 GCCAAAGTAGTGTGGGGGT 59.541 57.895 8.94 0.00 35.28 4.95
351 352 0.694196 GCCAAAGTAGTGTGGGGGTA 59.306 55.000 8.94 0.00 35.28 3.69
370 371 5.138758 GGTACCCCTAGGATCCAAAATTT 57.861 43.478 15.82 0.00 36.73 1.82
372 373 6.675565 GGTACCCCTAGGATCCAAAATTTTA 58.324 40.000 15.82 0.00 36.73 1.52
373 374 6.548622 GGTACCCCTAGGATCCAAAATTTTAC 59.451 42.308 15.82 6.65 36.73 2.01
374 375 6.417503 ACCCCTAGGATCCAAAATTTTACT 57.582 37.500 15.82 0.65 36.73 2.24
375 376 6.811574 ACCCCTAGGATCCAAAATTTTACTT 58.188 36.000 15.82 0.00 36.73 2.24
376 377 6.667848 ACCCCTAGGATCCAAAATTTTACTTG 59.332 38.462 15.82 0.00 36.73 3.16
377 378 6.098266 CCCCTAGGATCCAAAATTTTACTTGG 59.902 42.308 15.82 1.53 38.57 3.61
378 379 6.098266 CCCTAGGATCCAAAATTTTACTTGGG 59.902 42.308 15.82 11.75 42.09 4.12
379 380 6.098266 CCTAGGATCCAAAATTTTACTTGGGG 59.902 42.308 15.82 0.00 42.09 4.96
380 381 4.225042 AGGATCCAAAATTTTACTTGGGGC 59.775 41.667 15.82 0.00 42.09 5.80
381 382 3.669251 TCCAAAATTTTACTTGGGGCG 57.331 42.857 2.44 0.00 42.09 6.13
382 383 2.300437 TCCAAAATTTTACTTGGGGCGG 59.700 45.455 2.44 0.00 42.09 6.13
405 406 3.702048 CCCACACGACCCCACGAT 61.702 66.667 0.00 0.00 37.03 3.73
406 407 2.345991 CCACACGACCCCACGATT 59.654 61.111 0.00 0.00 37.03 3.34
407 408 2.032634 CCACACGACCCCACGATTG 61.033 63.158 0.00 0.00 37.03 2.67
409 410 0.391130 CACACGACCCCACGATTGAT 60.391 55.000 0.00 0.00 37.03 2.57
410 411 0.108329 ACACGACCCCACGATTGATC 60.108 55.000 0.00 0.00 37.03 2.92
411 412 0.810031 CACGACCCCACGATTGATCC 60.810 60.000 0.00 0.00 37.03 3.36
413 414 0.106708 CGACCCCACGATTGATCCAT 59.893 55.000 0.00 0.00 35.09 3.41
414 415 1.475034 CGACCCCACGATTGATCCATT 60.475 52.381 0.00 0.00 35.09 3.16
415 416 2.224185 CGACCCCACGATTGATCCATTA 60.224 50.000 0.00 0.00 35.09 1.90
416 417 3.742954 CGACCCCACGATTGATCCATTAA 60.743 47.826 0.00 0.00 35.09 1.40
417 418 3.815401 GACCCCACGATTGATCCATTAAG 59.185 47.826 0.00 0.00 0.00 1.85
418 419 3.202151 ACCCCACGATTGATCCATTAAGT 59.798 43.478 0.00 0.00 0.00 2.24
419 420 4.410883 ACCCCACGATTGATCCATTAAGTA 59.589 41.667 0.00 0.00 0.00 2.24
420 421 4.755123 CCCCACGATTGATCCATTAAGTAC 59.245 45.833 0.00 0.00 0.00 2.73
421 422 4.447724 CCCACGATTGATCCATTAAGTACG 59.552 45.833 0.00 0.00 0.00 3.67
422 423 5.047847 CCACGATTGATCCATTAAGTACGT 58.952 41.667 0.00 0.00 0.00 3.57
424 425 6.362551 CCACGATTGATCCATTAAGTACGTAG 59.637 42.308 0.00 0.00 0.00 3.51
425 426 6.362551 CACGATTGATCCATTAAGTACGTAGG 59.637 42.308 0.00 0.00 0.00 3.18
439 440 9.918630 TTAAGTACGTAGGATCTAATTAATGCC 57.081 33.333 0.00 0.00 0.00 4.40
442 443 8.035394 AGTACGTAGGATCTAATTAATGCCATG 58.965 37.037 0.00 0.00 0.00 3.66
443 444 7.004555 ACGTAGGATCTAATTAATGCCATGA 57.995 36.000 0.00 0.00 0.00 3.07
444 445 7.099764 ACGTAGGATCTAATTAATGCCATGAG 58.900 38.462 0.00 0.00 0.00 2.90
447 448 7.327064 AGGATCTAATTAATGCCATGAGAGT 57.673 36.000 0.00 0.00 0.00 3.24
448 449 7.753630 AGGATCTAATTAATGCCATGAGAGTT 58.246 34.615 0.00 0.00 0.00 3.01
450 451 7.094463 GGATCTAATTAATGCCATGAGAGTTGG 60.094 40.741 0.00 0.00 37.31 3.77
451 452 6.662755 TCTAATTAATGCCATGAGAGTTGGT 58.337 36.000 0.00 0.00 36.57 3.67
452 453 7.118723 TCTAATTAATGCCATGAGAGTTGGTT 58.881 34.615 0.00 0.00 36.57 3.67
453 454 5.841957 ATTAATGCCATGAGAGTTGGTTC 57.158 39.130 0.00 0.00 36.57 3.62
456 457 4.574674 ATGCCATGAGAGTTGGTTCTAA 57.425 40.909 0.00 0.00 36.57 2.10
457 458 3.674997 TGCCATGAGAGTTGGTTCTAAC 58.325 45.455 0.00 0.00 36.57 2.34
458 459 2.673368 GCCATGAGAGTTGGTTCTAACG 59.327 50.000 0.00 0.00 36.57 3.18
459 460 3.864921 GCCATGAGAGTTGGTTCTAACGT 60.865 47.826 0.00 0.00 36.57 3.99
460 461 3.679980 CCATGAGAGTTGGTTCTAACGTG 59.320 47.826 0.00 0.00 35.73 4.49
463 464 4.116961 TGAGAGTTGGTTCTAACGTGTTG 58.883 43.478 0.00 0.00 35.73 3.33
464 465 3.463944 AGAGTTGGTTCTAACGTGTTGG 58.536 45.455 0.00 0.00 35.73 3.77
465 466 3.118519 AGAGTTGGTTCTAACGTGTTGGT 60.119 43.478 0.00 0.00 35.73 3.67
466 467 4.099881 AGAGTTGGTTCTAACGTGTTGGTA 59.900 41.667 0.00 0.00 35.73 3.25
467 468 4.374399 AGTTGGTTCTAACGTGTTGGTAG 58.626 43.478 0.00 0.00 35.73 3.18
469 470 2.102757 TGGTTCTAACGTGTTGGTAGCA 59.897 45.455 4.10 4.10 0.00 3.49
471 472 3.059393 GGTTCTAACGTGTTGGTAGCAAC 60.059 47.826 26.90 26.90 35.75 4.17
472 473 2.758009 TCTAACGTGTTGGTAGCAACC 58.242 47.619 29.46 20.70 46.98 3.77
475 476 2.450609 ACGTGTTGGTAGCAACCTAG 57.549 50.000 29.46 22.61 46.91 3.02
476 477 1.690352 ACGTGTTGGTAGCAACCTAGT 59.310 47.619 29.46 23.14 46.91 2.57
478 479 2.735134 CGTGTTGGTAGCAACCTAGTTC 59.265 50.000 29.46 14.40 46.91 3.01
479 480 3.072211 GTGTTGGTAGCAACCTAGTTCC 58.928 50.000 29.46 7.82 46.91 3.62
480 481 2.976882 TGTTGGTAGCAACCTAGTTCCT 59.023 45.455 29.46 0.00 46.91 3.36
481 482 4.020839 GTGTTGGTAGCAACCTAGTTCCTA 60.021 45.833 29.46 9.48 46.91 2.94
482 483 4.781087 TGTTGGTAGCAACCTAGTTCCTAT 59.219 41.667 29.46 0.00 46.91 2.57
484 485 6.178324 GTTGGTAGCAACCTAGTTCCTATTT 58.822 40.000 24.08 0.00 46.91 1.40
486 487 6.177610 TGGTAGCAACCTAGTTCCTATTTTG 58.822 40.000 0.00 0.00 46.91 2.44
487 488 6.013206 TGGTAGCAACCTAGTTCCTATTTTGA 60.013 38.462 0.00 0.00 46.91 2.69
488 489 6.539103 GGTAGCAACCTAGTTCCTATTTTGAG 59.461 42.308 0.00 0.00 43.08 3.02
489 490 6.374417 AGCAACCTAGTTCCTATTTTGAGA 57.626 37.500 0.00 0.00 0.00 3.27
490 491 6.410540 AGCAACCTAGTTCCTATTTTGAGAG 58.589 40.000 0.00 0.00 0.00 3.20
491 492 5.586643 GCAACCTAGTTCCTATTTTGAGAGG 59.413 44.000 0.00 0.00 0.00 3.69
492 493 6.712276 CAACCTAGTTCCTATTTTGAGAGGT 58.288 40.000 0.00 0.00 36.34 3.85
493 494 6.547930 ACCTAGTTCCTATTTTGAGAGGTC 57.452 41.667 0.00 0.00 34.20 3.85
495 496 6.381707 ACCTAGTTCCTATTTTGAGAGGTCTC 59.618 42.308 0.00 0.00 43.15 3.36
496 497 6.609616 CCTAGTTCCTATTTTGAGAGGTCTCT 59.390 42.308 8.44 0.00 43.25 3.10
497 498 7.780745 CCTAGTTCCTATTTTGAGAGGTCTCTA 59.219 40.741 8.44 0.00 43.25 2.43
498 499 7.654022 AGTTCCTATTTTGAGAGGTCTCTAG 57.346 40.000 8.44 2.16 43.25 2.43
499 500 6.097696 AGTTCCTATTTTGAGAGGTCTCTAGC 59.902 42.308 8.44 0.00 43.25 3.42
500 501 5.772004 TCCTATTTTGAGAGGTCTCTAGCT 58.228 41.667 8.44 0.00 43.25 3.32
510 511 5.041951 GAGGTCTCTAGCTCGAATGTATG 57.958 47.826 0.00 0.00 40.21 2.39
511 512 4.465886 AGGTCTCTAGCTCGAATGTATGT 58.534 43.478 0.00 0.00 0.00 2.29
514 515 5.221067 GGTCTCTAGCTCGAATGTATGTTCA 60.221 44.000 0.00 0.00 0.00 3.18
515 516 6.442952 GTCTCTAGCTCGAATGTATGTTCAT 58.557 40.000 0.00 0.00 0.00 2.57
568 569 8.841444 ATGAAATTCGTTTGAAATATTCTCGG 57.159 30.769 0.00 0.00 37.71 4.63
569 570 7.812648 TGAAATTCGTTTGAAATATTCTCGGT 58.187 30.769 0.00 0.00 37.71 4.69
574 575 9.931210 ATTCGTTTGAAATATTCTCGGTATTTC 57.069 29.630 10.23 10.23 43.70 2.17
575 576 8.712285 TCGTTTGAAATATTCTCGGTATTTCT 57.288 30.769 15.51 0.00 43.75 2.52
578 579 7.709269 TTGAAATATTCTCGGTATTTCTCGG 57.291 36.000 15.51 0.00 43.75 4.63
579 580 6.812998 TGAAATATTCTCGGTATTTCTCGGT 58.187 36.000 15.51 0.00 43.75 4.69
580 581 7.944061 TGAAATATTCTCGGTATTTCTCGGTA 58.056 34.615 15.51 0.00 43.75 4.02
582 583 8.585189 AAATATTCTCGGTATTTCTCGGTAAC 57.415 34.615 0.00 0.00 28.29 2.50
583 584 4.376340 TTCTCGGTATTTCTCGGTAACC 57.624 45.455 0.00 0.00 0.00 2.85
588 589 3.489738 CGGTATTTCTCGGTAACCGTGAT 60.490 47.826 0.00 0.00 46.35 3.06
589 590 4.261155 CGGTATTTCTCGGTAACCGTGATA 60.261 45.833 0.00 0.00 46.35 2.15
590 591 5.591099 GGTATTTCTCGGTAACCGTGATAA 58.409 41.667 0.00 0.00 46.35 1.75
591 592 5.460091 GGTATTTCTCGGTAACCGTGATAAC 59.540 44.000 0.00 0.00 46.35 1.89
593 594 2.824936 TTCTCGGTAACCGTGATAACCA 59.175 45.455 0.00 0.00 46.35 3.67
594 595 3.367292 TTCTCGGTAACCGTGATAACCAC 60.367 47.826 0.00 0.00 46.35 4.16
604 605 2.687370 GTGATAACCACGTTTACCGGT 58.313 47.619 13.98 13.98 42.24 5.28
605 606 2.667969 GTGATAACCACGTTTACCGGTC 59.332 50.000 12.40 0.00 42.24 4.79
606 607 2.270923 GATAACCACGTTTACCGGTCC 58.729 52.381 12.40 0.00 42.24 4.46
607 608 0.320050 TAACCACGTTTACCGGTCCC 59.680 55.000 12.40 0.00 42.24 4.46
608 609 2.046988 CCACGTTTACCGGTCCCC 60.047 66.667 12.40 0.00 42.24 4.81
609 610 2.046988 CACGTTTACCGGTCCCCC 60.047 66.667 12.40 0.00 42.24 5.40
610 611 2.203832 ACGTTTACCGGTCCCCCT 60.204 61.111 12.40 0.00 42.24 4.79
611 612 2.285773 ACGTTTACCGGTCCCCCTC 61.286 63.158 12.40 0.00 42.24 4.30
612 613 2.580815 GTTTACCGGTCCCCCTCG 59.419 66.667 12.40 0.00 0.00 4.63
614 615 1.002017 TTTACCGGTCCCCCTCGAT 59.998 57.895 12.40 0.00 0.00 3.59
615 616 0.261402 TTTACCGGTCCCCCTCGATA 59.739 55.000 12.40 0.00 0.00 2.92
616 617 0.261402 TTACCGGTCCCCCTCGATAA 59.739 55.000 12.40 0.00 0.00 1.75
619 620 0.763035 CCGGTCCCCCTCGATAAAAT 59.237 55.000 0.00 0.00 0.00 1.82
620 621 1.142262 CCGGTCCCCCTCGATAAAATT 59.858 52.381 0.00 0.00 0.00 1.82
621 622 2.218603 CGGTCCCCCTCGATAAAATTG 58.781 52.381 0.00 0.00 0.00 2.32
623 624 1.954382 GTCCCCCTCGATAAAATTGCC 59.046 52.381 0.00 0.00 0.00 4.52
624 625 0.951558 CCCCCTCGATAAAATTGCCG 59.048 55.000 0.00 0.00 0.00 5.69
625 626 0.310854 CCCCTCGATAAAATTGCCGC 59.689 55.000 0.00 0.00 0.00 6.53
626 627 1.021202 CCCTCGATAAAATTGCCGCA 58.979 50.000 0.00 0.00 0.00 5.69
642 643 1.971792 CGCATTCGGTAACCAAAACC 58.028 50.000 0.00 0.00 0.00 3.27
643 644 1.538075 CGCATTCGGTAACCAAAACCT 59.462 47.619 0.00 0.00 34.66 3.50
653 654 3.986970 CCAAAACCTTGGTCCAAGC 57.013 52.632 24.19 0.00 46.25 4.01
654 655 1.118838 CCAAAACCTTGGTCCAAGCA 58.881 50.000 24.19 0.00 46.25 3.91
655 656 1.202521 CCAAAACCTTGGTCCAAGCAC 60.203 52.381 24.19 0.00 46.25 4.40
656 657 1.480137 CAAAACCTTGGTCCAAGCACA 59.520 47.619 24.19 0.00 39.85 4.57
657 658 2.086610 AAACCTTGGTCCAAGCACAT 57.913 45.000 24.19 8.52 39.85 3.21
661 662 1.004044 CCTTGGTCCAAGCACATCTCT 59.996 52.381 24.19 0.00 39.85 3.10
662 663 2.237143 CCTTGGTCCAAGCACATCTCTA 59.763 50.000 24.19 0.00 39.85 2.43
664 665 2.820178 TGGTCCAAGCACATCTCTAGA 58.180 47.619 0.00 0.00 0.00 2.43
665 666 3.378512 TGGTCCAAGCACATCTCTAGAT 58.621 45.455 0.00 0.00 34.56 1.98
666 667 3.776969 TGGTCCAAGCACATCTCTAGATT 59.223 43.478 0.00 0.00 31.21 2.40
668 669 4.100808 GGTCCAAGCACATCTCTAGATTCT 59.899 45.833 0.00 0.00 31.21 2.40
669 670 5.288804 GTCCAAGCACATCTCTAGATTCTC 58.711 45.833 0.00 0.00 31.21 2.87
671 672 6.264292 GTCCAAGCACATCTCTAGATTCTCTA 59.736 42.308 0.00 0.00 31.21 2.43
680 681 7.836685 ACATCTCTAGATTCTCTACCTTCACAA 59.163 37.037 0.00 0.00 31.21 3.33
687 688 4.730949 TCTCTACCTTCACAAATACCCG 57.269 45.455 0.00 0.00 0.00 5.28
701 702 1.833787 TACCCGGCCAAACCTGAGAC 61.834 60.000 2.24 0.00 35.61 3.36
714 715 3.567797 GAGACGGAGCATTGCGCC 61.568 66.667 20.22 20.22 44.88 6.53
733 734 2.357034 GACTGCGCGTCCAGGAAA 60.357 61.111 17.73 0.00 37.16 3.13
791 816 1.079543 GTCTCACGCATGCACTCCT 60.080 57.895 19.57 0.00 0.00 3.69
815 840 2.271800 CTGGTTTGTAGGATCTCACGC 58.728 52.381 0.00 0.00 0.00 5.34
817 842 2.236146 TGGTTTGTAGGATCTCACGCAT 59.764 45.455 0.00 0.00 0.00 4.73
826 851 1.164662 ATCTCACGCATGCCATCTGC 61.165 55.000 13.15 0.00 41.77 4.26
843 868 1.447643 GCAGAGGGCATACGGTCAT 59.552 57.895 0.00 0.00 43.97 3.06
856 881 1.286553 ACGGTCATCCTCTCCTTCTCT 59.713 52.381 0.00 0.00 0.00 3.10
859 884 1.336755 GTCATCCTCTCCTTCTCTCGC 59.663 57.143 0.00 0.00 0.00 5.03
860 885 0.310543 CATCCTCTCCTTCTCTCGCG 59.689 60.000 0.00 0.00 0.00 5.87
866 891 2.026157 CCTTCTCTCGCGCGCATA 59.974 61.111 32.61 17.65 0.00 3.14
867 892 2.296480 CCTTCTCTCGCGCGCATAC 61.296 63.158 32.61 0.72 0.00 2.39
901 926 5.156355 CCATGCACACATTCAGTTTAACTC 58.844 41.667 0.00 0.00 32.87 3.01
905 930 3.813166 CACACATTCAGTTTAACTCCCGT 59.187 43.478 0.00 0.00 0.00 5.28
920 945 0.179145 CCCGTGTTCGTCGCTAATCT 60.179 55.000 0.00 0.00 35.01 2.40
961 994 3.977244 CGCAGCCCAACCACAACC 61.977 66.667 0.00 0.00 0.00 3.77
962 995 3.977244 GCAGCCCAACCACAACCG 61.977 66.667 0.00 0.00 0.00 4.44
963 996 2.203280 CAGCCCAACCACAACCGA 60.203 61.111 0.00 0.00 0.00 4.69
965 998 2.203294 GCCCAACCACAACCGAGT 60.203 61.111 0.00 0.00 0.00 4.18
966 999 2.551912 GCCCAACCACAACCGAGTG 61.552 63.158 0.00 0.00 39.21 3.51
967 1000 2.551912 CCCAACCACAACCGAGTGC 61.552 63.158 0.00 0.00 38.18 4.40
968 1001 2.631428 CAACCACAACCGAGTGCG 59.369 61.111 0.00 0.00 38.18 5.34
969 1002 1.885388 CAACCACAACCGAGTGCGA 60.885 57.895 0.00 0.00 40.82 5.10
970 1003 1.070786 AACCACAACCGAGTGCGAT 59.929 52.632 0.00 0.00 40.82 4.58
1014 3654 4.170062 TCGATGGCCGTCGACGAC 62.170 66.667 39.46 27.72 44.87 4.34
1022 3662 1.733041 CCGTCGACGACAATGTGCT 60.733 57.895 37.65 0.00 43.02 4.40
1390 4045 3.795638 GACGCGGTCCAGAATTCC 58.204 61.111 12.47 0.00 0.00 3.01
1404 4059 7.420214 GGTCCAGAATTCCAGAAGGTATATCAA 60.420 40.741 0.65 0.00 35.89 2.57
1405 4060 7.442666 GTCCAGAATTCCAGAAGGTATATCAAC 59.557 40.741 0.65 0.00 35.89 3.18
1407 4062 6.425114 CAGAATTCCAGAAGGTATATCAACCG 59.575 42.308 0.65 0.00 44.77 4.44
1446 4151 3.955650 TGAGTAGCACTAGTGTTTCCC 57.044 47.619 23.44 7.75 0.00 3.97
1447 4152 3.236047 TGAGTAGCACTAGTGTTTCCCA 58.764 45.455 23.44 10.33 0.00 4.37
1556 4288 0.741221 GAGCAATCACGTGGGAGTCC 60.741 60.000 17.00 0.00 0.00 3.85
1574 4315 0.321653 CCAACTCGTTTAGGCTGCCT 60.322 55.000 26.52 26.52 37.71 4.75
1618 4359 1.166531 ACAGTTGTGCCCTTCTTCGC 61.167 55.000 0.00 0.00 0.00 4.70
1715 4456 0.690192 TTGTGATCGTGGATGTGGGT 59.310 50.000 0.00 0.00 0.00 4.51
1718 4459 1.737793 GTGATCGTGGATGTGGGTTTC 59.262 52.381 0.00 0.00 0.00 2.78
1864 4617 6.183360 CCTTTGCTTTGAAATATGCACATCAC 60.183 38.462 0.00 0.00 35.01 3.06
1872 4625 6.990798 TGAAATATGCACATCACTTGGAAAA 58.009 32.000 0.00 0.00 0.00 2.29
1887 5045 5.954150 ACTTGGAAAAATCATATGGCTCACT 59.046 36.000 2.13 0.00 0.00 3.41
1948 5176 7.446931 TGTGTAGTTGTGTTGGTATTTGATGAT 59.553 33.333 0.00 0.00 0.00 2.45
1966 5194 7.281040 TGATGATGATTTTGCTATTTCCTCC 57.719 36.000 0.00 0.00 0.00 4.30
1976 5204 1.867233 CTATTTCCTCCGGTCATTGCG 59.133 52.381 0.00 0.00 0.00 4.85
2008 5242 7.095940 GCATTCATGATAAAATTGGGATTGTCG 60.096 37.037 0.00 0.00 0.00 4.35
2027 5261 7.915293 TTGTCGTGGATCTTATATTTGTGTT 57.085 32.000 0.00 0.00 0.00 3.32
2070 6552 6.509677 GCTCTACCATATGCTTTTGTTACGAC 60.510 42.308 0.00 0.00 0.00 4.34
2071 6553 6.399743 TCTACCATATGCTTTTGTTACGACA 58.600 36.000 0.00 0.00 0.00 4.35
2077 6559 7.591057 CCATATGCTTTTGTTACGACATAATGG 59.409 37.037 0.00 0.00 35.29 3.16
2137 6621 8.396272 AGCAATATTAATTTCTTACGCTCCAT 57.604 30.769 0.00 0.00 0.00 3.41
2138 6622 8.507249 AGCAATATTAATTTCTTACGCTCCATC 58.493 33.333 0.00 0.00 0.00 3.51
2173 6657 3.038788 TGTTGTATCTTTGCAGCGAGA 57.961 42.857 1.15 1.15 0.00 4.04
2174 6658 2.995939 TGTTGTATCTTTGCAGCGAGAG 59.004 45.455 4.78 0.00 0.00 3.20
2181 6665 1.925847 CTTTGCAGCGAGAGTGAGATC 59.074 52.381 0.00 0.00 0.00 2.75
2187 6671 3.295785 CAGCGAGAGTGAGATCATAACG 58.704 50.000 0.00 0.00 0.00 3.18
2257 6742 8.881743 GCTCTCATCATTGATAATTACTCCATC 58.118 37.037 0.00 0.00 0.00 3.51
2258 6743 9.939802 CTCTCATCATTGATAATTACTCCATCA 57.060 33.333 0.00 0.00 0.00 3.07
2259 6744 9.939802 TCTCATCATTGATAATTACTCCATCAG 57.060 33.333 0.00 0.00 30.77 2.90
2284 6771 4.255301 CCAATGGAATGACCCAATGTTTG 58.745 43.478 0.00 0.00 40.04 2.93
2294 6781 4.187694 GACCCAATGTTTGCAAGTTTTGA 58.812 39.130 15.01 0.00 0.00 2.69
2295 6782 4.190772 ACCCAATGTTTGCAAGTTTTGAG 58.809 39.130 15.01 7.66 0.00 3.02
2299 6786 7.151308 CCCAATGTTTGCAAGTTTTGAGTATA 58.849 34.615 15.01 0.00 0.00 1.47
2322 8596 5.144100 AGCATGAGTATACTCTACTTGGCT 58.856 41.667 28.53 22.77 43.25 4.75
2354 8628 5.288015 CAATTGTGACTTTGTGCCATGTTA 58.712 37.500 0.00 0.00 0.00 2.41
2492 8766 3.254166 CACTGCATTTTGGTAGAAGTGCT 59.746 43.478 6.65 0.00 41.26 4.40
2493 8767 3.254166 ACTGCATTTTGGTAGAAGTGCTG 59.746 43.478 9.30 9.30 41.26 4.41
2533 9050 6.595326 CCTGTTCTATGACTCAGTTTAATGCA 59.405 38.462 0.00 0.00 0.00 3.96
2631 13367 4.781087 TCTAGTACTTTAAGGTGGTGCCAT 59.219 41.667 0.00 0.00 40.61 4.40
2632 13368 3.686016 AGTACTTTAAGGTGGTGCCATG 58.314 45.455 0.00 0.00 40.61 3.66
2642 13378 2.398554 GGTGCCATGTGCCACTACG 61.399 63.158 0.00 0.00 40.16 3.51
2670 13409 5.159925 GGTAGACGTTCCTTTGAGAACTAC 58.840 45.833 0.00 0.00 43.27 2.73
2689 13428 1.476488 ACTTTCTGGCGTTGCAAGTTT 59.524 42.857 0.00 0.00 30.42 2.66
2711 13450 7.701924 AGTTTGTATCATCAGTTGTGTGTTTTG 59.298 33.333 0.00 0.00 0.00 2.44
2738 13477 4.511826 CACTACCAACTGAAAGGACAAGAC 59.488 45.833 0.00 0.00 39.30 3.01
2761 13500 9.927668 AGACCAAATCGAATTCAATAACATTTT 57.072 25.926 6.22 0.00 0.00 1.82
2763 13502 9.927668 ACCAAATCGAATTCAATAACATTTTCT 57.072 25.926 6.22 0.00 0.00 2.52
2785 13524 8.533569 TTCTTGAAAGAAAAGGTAGACCATTT 57.466 30.769 3.00 1.66 41.75 2.32
2786 13525 8.533569 TCTTGAAAGAAAAGGTAGACCATTTT 57.466 30.769 3.60 6.11 37.09 1.82
2787 13526 8.630037 TCTTGAAAGAAAAGGTAGACCATTTTC 58.370 33.333 18.70 18.70 37.09 2.29
2788 13527 8.533569 TTGAAAGAAAAGGTAGACCATTTTCT 57.466 30.769 21.05 21.05 45.00 2.52
2789 13528 9.635404 TTGAAAGAAAAGGTAGACCATTTTCTA 57.365 29.630 23.96 14.56 43.86 2.10
2790 13529 9.063615 TGAAAGAAAAGGTAGACCATTTTCTAC 57.936 33.333 23.96 21.39 43.86 2.59
2800 13539 8.451908 GTAGACCATTTTCTACCTTATGCATT 57.548 34.615 3.54 0.00 41.50 3.56
2801 13540 7.573968 AGACCATTTTCTACCTTATGCATTC 57.426 36.000 3.54 0.00 0.00 2.67
2802 13541 7.118723 AGACCATTTTCTACCTTATGCATTCA 58.881 34.615 3.54 0.00 0.00 2.57
2803 13542 7.615365 AGACCATTTTCTACCTTATGCATTCAA 59.385 33.333 3.54 0.00 0.00 2.69
2804 13543 8.133024 ACCATTTTCTACCTTATGCATTCAAA 57.867 30.769 3.54 0.00 0.00 2.69
2805 13544 8.592809 ACCATTTTCTACCTTATGCATTCAAAA 58.407 29.630 3.54 1.07 0.00 2.44
2806 13545 8.872845 CCATTTTCTACCTTATGCATTCAAAAC 58.127 33.333 3.54 0.00 0.00 2.43
2807 13546 8.586273 CATTTTCTACCTTATGCATTCAAAACG 58.414 33.333 3.54 0.00 0.00 3.60
2808 13547 5.811399 TCTACCTTATGCATTCAAAACGG 57.189 39.130 3.54 0.00 0.00 4.44
2809 13548 3.866883 ACCTTATGCATTCAAAACGGG 57.133 42.857 3.54 0.00 0.00 5.28
2810 13549 2.495669 ACCTTATGCATTCAAAACGGGG 59.504 45.455 3.54 0.00 0.00 5.73
2811 13550 2.757868 CCTTATGCATTCAAAACGGGGA 59.242 45.455 3.54 0.00 0.00 4.81
2812 13551 3.181487 CCTTATGCATTCAAAACGGGGAG 60.181 47.826 3.54 0.00 0.00 4.30
2813 13552 2.214376 ATGCATTCAAAACGGGGAGA 57.786 45.000 0.00 0.00 0.00 3.71
2814 13553 1.243902 TGCATTCAAAACGGGGAGAC 58.756 50.000 0.00 0.00 0.00 3.36
2815 13554 1.202879 TGCATTCAAAACGGGGAGACT 60.203 47.619 0.00 0.00 0.00 3.24
2816 13555 1.468914 GCATTCAAAACGGGGAGACTC 59.531 52.381 0.00 0.00 0.00 3.36
2817 13556 2.084546 CATTCAAAACGGGGAGACTCC 58.915 52.381 13.60 13.60 35.23 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.275888 TGACAACTTTAGATTTTCACAGCAT 57.724 32.000 0.00 0.00 0.00 3.79
2 3 6.691754 TGACAACTTTAGATTTTCACAGCA 57.308 33.333 0.00 0.00 0.00 4.41
4 5 9.956720 AATCTTGACAACTTTAGATTTTCACAG 57.043 29.630 0.00 0.00 34.57 3.66
5 6 9.734620 CAATCTTGACAACTTTAGATTTTCACA 57.265 29.630 0.00 0.00 35.70 3.58
7 8 9.130661 TCCAATCTTGACAACTTTAGATTTTCA 57.869 29.630 0.00 0.00 35.70 2.69
14 15 8.834465 CCTCATATCCAATCTTGACAACTTTAG 58.166 37.037 0.00 0.00 0.00 1.85
16 17 7.405292 TCCTCATATCCAATCTTGACAACTTT 58.595 34.615 0.00 0.00 0.00 2.66
17 18 6.962182 TCCTCATATCCAATCTTGACAACTT 58.038 36.000 0.00 0.00 0.00 2.66
18 19 6.566079 TCCTCATATCCAATCTTGACAACT 57.434 37.500 0.00 0.00 0.00 3.16
21 22 5.131642 AGCTTCCTCATATCCAATCTTGACA 59.868 40.000 0.00 0.00 0.00 3.58
22 23 5.469421 CAGCTTCCTCATATCCAATCTTGAC 59.531 44.000 0.00 0.00 0.00 3.18
23 24 5.455755 CCAGCTTCCTCATATCCAATCTTGA 60.456 44.000 0.00 0.00 0.00 3.02
24 25 4.760715 CCAGCTTCCTCATATCCAATCTTG 59.239 45.833 0.00 0.00 0.00 3.02
26 27 3.330110 CCCAGCTTCCTCATATCCAATCT 59.670 47.826 0.00 0.00 0.00 2.40
27 28 3.560882 CCCCAGCTTCCTCATATCCAATC 60.561 52.174 0.00 0.00 0.00 2.67
28 29 2.377869 CCCCAGCTTCCTCATATCCAAT 59.622 50.000 0.00 0.00 0.00 3.16
29 30 1.776667 CCCCAGCTTCCTCATATCCAA 59.223 52.381 0.00 0.00 0.00 3.53
33 34 1.143813 CACCCCCAGCTTCCTCATAT 58.856 55.000 0.00 0.00 0.00 1.78
34 35 0.253160 ACACCCCCAGCTTCCTCATA 60.253 55.000 0.00 0.00 0.00 2.15
35 36 1.142688 AACACCCCCAGCTTCCTCAT 61.143 55.000 0.00 0.00 0.00 2.90
37 38 0.035343 GTAACACCCCCAGCTTCCTC 60.035 60.000 0.00 0.00 0.00 3.71
38 39 0.770557 TGTAACACCCCCAGCTTCCT 60.771 55.000 0.00 0.00 0.00 3.36
39 40 0.322546 CTGTAACACCCCCAGCTTCC 60.323 60.000 0.00 0.00 0.00 3.46
40 41 0.322546 CCTGTAACACCCCCAGCTTC 60.323 60.000 0.00 0.00 0.00 3.86
41 42 0.770557 TCCTGTAACACCCCCAGCTT 60.771 55.000 0.00 0.00 0.00 3.74
43 44 0.111639 TTTCCTGTAACACCCCCAGC 59.888 55.000 0.00 0.00 0.00 4.85
44 45 2.514803 CTTTTCCTGTAACACCCCCAG 58.485 52.381 0.00 0.00 0.00 4.45
45 46 1.146152 CCTTTTCCTGTAACACCCCCA 59.854 52.381 0.00 0.00 0.00 4.96
48 49 3.217681 TGACCTTTTCCTGTAACACCC 57.782 47.619 0.00 0.00 0.00 4.61
50 51 5.767816 AACATGACCTTTTCCTGTAACAC 57.232 39.130 0.00 0.00 32.33 3.32
53 54 8.934023 AGATTAAACATGACCTTTTCCTGTAA 57.066 30.769 0.00 0.00 32.33 2.41
54 55 8.383175 AGAGATTAAACATGACCTTTTCCTGTA 58.617 33.333 0.00 0.00 32.33 2.74
55 56 7.175641 CAGAGATTAAACATGACCTTTTCCTGT 59.824 37.037 0.00 0.00 34.78 4.00
56 57 7.391554 TCAGAGATTAAACATGACCTTTTCCTG 59.608 37.037 0.00 0.00 0.00 3.86
57 58 7.391833 GTCAGAGATTAAACATGACCTTTTCCT 59.608 37.037 0.00 0.00 35.37 3.36
65 66 5.734720 TCAGGGTCAGAGATTAAACATGAC 58.265 41.667 0.00 10.68 39.59 3.06
66 67 5.485353 ACTCAGGGTCAGAGATTAAACATGA 59.515 40.000 0.00 0.00 36.91 3.07
67 68 5.738909 ACTCAGGGTCAGAGATTAAACATG 58.261 41.667 0.00 0.00 36.91 3.21
68 69 6.098982 CCTACTCAGGGTCAGAGATTAAACAT 59.901 42.308 0.00 0.00 38.41 2.71
69 70 5.422331 CCTACTCAGGGTCAGAGATTAAACA 59.578 44.000 0.00 0.00 38.41 2.83
70 71 5.908341 CCTACTCAGGGTCAGAGATTAAAC 58.092 45.833 0.00 0.00 38.41 2.01
93 94 5.476091 TTGTACATTTGATGAAAACCCCC 57.524 39.130 0.00 0.00 0.00 5.40
94 95 8.311109 ACTTATTGTACATTTGATGAAAACCCC 58.689 33.333 0.00 0.00 0.00 4.95
96 97 9.139174 CCACTTATTGTACATTTGATGAAAACC 57.861 33.333 0.00 0.00 0.00 3.27
98 99 7.816995 GGCCACTTATTGTACATTTGATGAAAA 59.183 33.333 0.00 0.00 0.00 2.29
99 100 7.178274 AGGCCACTTATTGTACATTTGATGAAA 59.822 33.333 5.01 0.00 0.00 2.69
100 101 6.663093 AGGCCACTTATTGTACATTTGATGAA 59.337 34.615 5.01 0.00 0.00 2.57
102 103 6.095300 TCAGGCCACTTATTGTACATTTGATG 59.905 38.462 5.01 0.00 0.00 3.07
103 104 6.186957 TCAGGCCACTTATTGTACATTTGAT 58.813 36.000 5.01 0.00 0.00 2.57
104 105 5.565509 TCAGGCCACTTATTGTACATTTGA 58.434 37.500 5.01 0.00 0.00 2.69
106 107 4.949856 CCTCAGGCCACTTATTGTACATTT 59.050 41.667 5.01 0.00 0.00 2.32
107 108 4.526970 CCTCAGGCCACTTATTGTACATT 58.473 43.478 5.01 0.00 0.00 2.71
108 109 3.117888 CCCTCAGGCCACTTATTGTACAT 60.118 47.826 5.01 0.00 0.00 2.29
109 110 2.238646 CCCTCAGGCCACTTATTGTACA 59.761 50.000 5.01 0.00 0.00 2.90
110 111 2.504175 TCCCTCAGGCCACTTATTGTAC 59.496 50.000 5.01 0.00 0.00 2.90
111 112 2.504175 GTCCCTCAGGCCACTTATTGTA 59.496 50.000 5.01 0.00 0.00 2.41
112 113 1.282157 GTCCCTCAGGCCACTTATTGT 59.718 52.381 5.01 0.00 0.00 2.71
114 115 0.919710 GGTCCCTCAGGCCACTTATT 59.080 55.000 5.01 0.00 31.63 1.40
115 116 0.044855 AGGTCCCTCAGGCCACTTAT 59.955 55.000 5.01 0.00 33.20 1.73
116 117 0.617820 GAGGTCCCTCAGGCCACTTA 60.618 60.000 5.01 0.00 42.31 2.24
117 118 1.920835 GAGGTCCCTCAGGCCACTT 60.921 63.158 5.01 0.00 42.31 3.16
118 119 2.284995 GAGGTCCCTCAGGCCACT 60.285 66.667 5.01 0.00 42.31 4.00
119 120 3.403558 GGAGGTCCCTCAGGCCAC 61.404 72.222 15.01 0.00 44.40 5.01
124 125 2.478872 TAGGAATGGAGGTCCCTCAG 57.521 55.000 15.01 0.00 44.40 3.35
125 126 2.524440 AGATAGGAATGGAGGTCCCTCA 59.476 50.000 15.01 2.32 44.40 3.86
126 127 2.903135 CAGATAGGAATGGAGGTCCCTC 59.097 54.545 4.68 4.68 42.04 4.30
127 128 2.251338 ACAGATAGGAATGGAGGTCCCT 59.749 50.000 0.00 0.00 35.59 4.20
131 132 3.231818 CGGTACAGATAGGAATGGAGGT 58.768 50.000 0.00 0.00 0.00 3.85
132 133 3.231818 ACGGTACAGATAGGAATGGAGG 58.768 50.000 0.00 0.00 0.00 4.30
134 135 3.228453 GGACGGTACAGATAGGAATGGA 58.772 50.000 0.00 0.00 0.00 3.41
135 136 2.963101 TGGACGGTACAGATAGGAATGG 59.037 50.000 0.00 0.00 0.00 3.16
137 138 5.888982 AAATGGACGGTACAGATAGGAAT 57.111 39.130 0.00 0.00 0.00 3.01
139 140 4.712829 TGAAAATGGACGGTACAGATAGGA 59.287 41.667 0.00 0.00 0.00 2.94
140 141 5.018539 TGAAAATGGACGGTACAGATAGG 57.981 43.478 0.00 0.00 0.00 2.57
141 142 6.202954 GGATTGAAAATGGACGGTACAGATAG 59.797 42.308 0.00 0.00 0.00 2.08
142 143 6.053005 GGATTGAAAATGGACGGTACAGATA 58.947 40.000 0.00 0.00 0.00 1.98
143 144 4.881850 GGATTGAAAATGGACGGTACAGAT 59.118 41.667 0.00 0.00 0.00 2.90
146 147 4.022413 TGGATTGAAAATGGACGGTACA 57.978 40.909 0.00 0.00 0.00 2.90
147 148 5.339990 CATTGGATTGAAAATGGACGGTAC 58.660 41.667 0.00 0.00 31.46 3.34
148 149 5.574891 CATTGGATTGAAAATGGACGGTA 57.425 39.130 0.00 0.00 31.46 4.02
149 150 4.454728 CATTGGATTGAAAATGGACGGT 57.545 40.909 0.00 0.00 31.46 4.83
155 156 6.164417 TCCTATGCCATTGGATTGAAAATG 57.836 37.500 6.95 0.00 34.26 2.32
156 157 6.013984 GGATCCTATGCCATTGGATTGAAAAT 60.014 38.462 19.48 0.00 43.41 1.82
157 158 5.305128 GGATCCTATGCCATTGGATTGAAAA 59.695 40.000 19.48 0.00 43.41 2.29
158 159 4.834496 GGATCCTATGCCATTGGATTGAAA 59.166 41.667 19.48 0.00 43.41 2.69
160 161 3.659195 AGGATCCTATGCCATTGGATTGA 59.341 43.478 19.48 0.00 43.41 2.57
161 162 4.043608 AGGATCCTATGCCATTGGATTG 57.956 45.455 19.48 0.00 43.41 2.67
162 163 4.754411 AAGGATCCTATGCCATTGGATT 57.246 40.909 19.48 4.62 43.41 3.01
163 164 4.754411 AAAGGATCCTATGCCATTGGAT 57.246 40.909 18.73 18.73 45.50 3.41
165 166 4.897670 AGAAAAAGGATCCTATGCCATTGG 59.102 41.667 16.55 0.00 0.00 3.16
167 168 8.230306 AGAATAGAAAAAGGATCCTATGCCATT 58.770 33.333 16.55 10.49 0.00 3.16
168 169 7.763613 AGAATAGAAAAAGGATCCTATGCCAT 58.236 34.615 16.55 2.61 0.00 4.40
169 170 7.154191 AGAATAGAAAAAGGATCCTATGCCA 57.846 36.000 16.55 0.00 0.00 4.92
170 171 7.941790 AGAAGAATAGAAAAAGGATCCTATGCC 59.058 37.037 16.55 5.38 0.00 4.40
175 176 7.629721 AGGGTAGAAGAATAGAAAAAGGATCCT 59.370 37.037 9.02 9.02 0.00 3.24
179 180 8.265764 GCTTAGGGTAGAAGAATAGAAAAAGGA 58.734 37.037 0.00 0.00 0.00 3.36
181 182 7.499563 GGGCTTAGGGTAGAAGAATAGAAAAAG 59.500 40.741 0.00 0.00 0.00 2.27
182 183 7.037153 TGGGCTTAGGGTAGAAGAATAGAAAAA 60.037 37.037 0.00 0.00 0.00 1.94
183 184 6.445786 TGGGCTTAGGGTAGAAGAATAGAAAA 59.554 38.462 0.00 0.00 0.00 2.29
184 185 5.968167 TGGGCTTAGGGTAGAAGAATAGAAA 59.032 40.000 0.00 0.00 0.00 2.52
186 187 5.103215 TCTGGGCTTAGGGTAGAAGAATAGA 60.103 44.000 0.00 0.00 0.00 1.98
187 188 5.148502 TCTGGGCTTAGGGTAGAAGAATAG 58.851 45.833 0.00 0.00 0.00 1.73
188 189 5.152306 TCTGGGCTTAGGGTAGAAGAATA 57.848 43.478 0.00 0.00 0.00 1.75
189 190 4.008916 TCTGGGCTTAGGGTAGAAGAAT 57.991 45.455 0.00 0.00 0.00 2.40
190 191 3.484953 TCTGGGCTTAGGGTAGAAGAA 57.515 47.619 0.00 0.00 0.00 2.52
191 192 3.708236 ATCTGGGCTTAGGGTAGAAGA 57.292 47.619 0.00 0.00 0.00 2.87
193 194 4.008916 AGAATCTGGGCTTAGGGTAGAA 57.991 45.455 0.00 0.00 0.00 2.10
196 197 4.109765 AGGATAGAATCTGGGCTTAGGGTA 59.890 45.833 0.00 0.00 0.00 3.69
197 198 3.116159 AGGATAGAATCTGGGCTTAGGGT 60.116 47.826 0.00 0.00 0.00 4.34
198 199 3.525862 AGGATAGAATCTGGGCTTAGGG 58.474 50.000 0.00 0.00 0.00 3.53
199 200 5.337788 ACTAGGATAGAATCTGGGCTTAGG 58.662 45.833 0.00 0.00 42.77 2.69
200 201 5.420739 GGACTAGGATAGAATCTGGGCTTAG 59.579 48.000 0.00 0.00 42.77 2.18
201 202 5.334421 GGACTAGGATAGAATCTGGGCTTA 58.666 45.833 0.00 0.00 42.77 3.09
202 203 4.164204 GGACTAGGATAGAATCTGGGCTT 58.836 47.826 0.00 0.00 42.77 4.35
203 204 3.503227 GGGACTAGGATAGAATCTGGGCT 60.503 52.174 0.00 0.00 42.77 5.19
204 205 2.835156 GGGACTAGGATAGAATCTGGGC 59.165 54.545 0.00 0.00 42.77 5.36
205 206 4.349365 GAGGGACTAGGATAGAATCTGGG 58.651 52.174 0.00 0.00 42.77 4.45
206 207 4.349365 GGAGGGACTAGGATAGAATCTGG 58.651 52.174 0.00 0.00 42.77 3.86
208 209 3.338519 GGGGAGGGACTAGGATAGAATCT 59.661 52.174 0.00 0.00 42.77 2.40
210 211 2.043252 CGGGGAGGGACTAGGATAGAAT 59.957 54.545 0.00 0.00 42.77 2.40
211 212 1.428139 CGGGGAGGGACTAGGATAGAA 59.572 57.143 0.00 0.00 42.77 2.10
212 213 1.073931 CGGGGAGGGACTAGGATAGA 58.926 60.000 0.00 0.00 42.77 1.98
213 214 0.778720 ACGGGGAGGGACTAGGATAG 59.221 60.000 0.00 0.00 46.50 2.08
214 215 1.238615 AACGGGGAGGGACTAGGATA 58.761 55.000 0.00 0.00 41.55 2.59
218 219 2.679429 AGATAACGGGGAGGGACTAG 57.321 55.000 0.00 0.00 41.55 2.57
222 223 1.574339 AGAGAAGATAACGGGGAGGGA 59.426 52.381 0.00 0.00 0.00 4.20
223 224 1.964933 GAGAGAAGATAACGGGGAGGG 59.035 57.143 0.00 0.00 0.00 4.30
225 226 2.888414 GAGGAGAGAAGATAACGGGGAG 59.112 54.545 0.00 0.00 0.00 4.30
226 227 2.514582 AGAGGAGAGAAGATAACGGGGA 59.485 50.000 0.00 0.00 0.00 4.81
228 229 3.556999 TGAGAGGAGAGAAGATAACGGG 58.443 50.000 0.00 0.00 0.00 5.28
230 231 6.293955 GGAAGATGAGAGGAGAGAAGATAACG 60.294 46.154 0.00 0.00 0.00 3.18
231 232 6.549364 TGGAAGATGAGAGGAGAGAAGATAAC 59.451 42.308 0.00 0.00 0.00 1.89
232 233 6.677552 TGGAAGATGAGAGGAGAGAAGATAA 58.322 40.000 0.00 0.00 0.00 1.75
234 235 5.141455 TGGAAGATGAGAGGAGAGAAGAT 57.859 43.478 0.00 0.00 0.00 2.40
235 236 4.535781 CTGGAAGATGAGAGGAGAGAAGA 58.464 47.826 0.00 0.00 34.07 2.87
236 237 3.068590 GCTGGAAGATGAGAGGAGAGAAG 59.931 52.174 0.00 0.00 34.07 2.85
237 238 3.030291 GCTGGAAGATGAGAGGAGAGAA 58.970 50.000 0.00 0.00 34.07 2.87
238 239 2.244510 AGCTGGAAGATGAGAGGAGAGA 59.755 50.000 0.00 0.00 34.07 3.10
239 240 2.624838 GAGCTGGAAGATGAGAGGAGAG 59.375 54.545 0.00 0.00 34.07 3.20
240 241 2.665165 GAGCTGGAAGATGAGAGGAGA 58.335 52.381 0.00 0.00 34.07 3.71
241 242 1.337703 CGAGCTGGAAGATGAGAGGAG 59.662 57.143 0.00 0.00 34.07 3.69
242 243 1.064389 TCGAGCTGGAAGATGAGAGGA 60.064 52.381 0.00 0.00 34.07 3.71
243 244 1.397672 TCGAGCTGGAAGATGAGAGG 58.602 55.000 0.00 0.00 34.07 3.69
247 248 1.959985 GGAGATCGAGCTGGAAGATGA 59.040 52.381 8.50 0.00 34.07 2.92
248 249 1.000731 GGGAGATCGAGCTGGAAGATG 59.999 57.143 8.50 0.00 34.07 2.90
249 250 1.337118 GGGAGATCGAGCTGGAAGAT 58.663 55.000 8.50 0.00 34.07 2.40
250 251 0.033109 TGGGAGATCGAGCTGGAAGA 60.033 55.000 8.50 0.00 34.07 2.87
252 253 1.680522 GCTGGGAGATCGAGCTGGAA 61.681 60.000 8.50 0.00 42.84 3.53
253 254 2.130426 GCTGGGAGATCGAGCTGGA 61.130 63.158 8.50 0.00 42.84 3.86
254 255 2.420890 GCTGGGAGATCGAGCTGG 59.579 66.667 8.50 0.00 42.84 4.85
255 256 1.804396 ATCGCTGGGAGATCGAGCTG 61.804 60.000 8.50 0.00 43.78 4.24
256 257 1.530419 ATCGCTGGGAGATCGAGCT 60.530 57.895 1.00 1.00 43.78 4.09
257 258 1.372748 CATCGCTGGGAGATCGAGC 60.373 63.158 0.00 0.00 42.73 5.03
258 259 1.372748 GCATCGCTGGGAGATCGAG 60.373 63.158 0.00 0.00 35.61 4.04
259 260 2.730733 GCATCGCTGGGAGATCGA 59.269 61.111 0.00 0.00 36.63 3.59
260 261 2.732468 CGCATCGCTGGGAGATCG 60.732 66.667 0.00 0.23 37.51 3.69
261 262 2.356793 CCGCATCGCTGGGAGATC 60.357 66.667 4.73 0.00 37.51 2.75
262 263 2.839632 TCCGCATCGCTGGGAGAT 60.840 61.111 4.73 0.00 37.51 2.75
263 264 3.838271 GTCCGCATCGCTGGGAGA 61.838 66.667 4.73 0.00 37.51 3.71
264 265 2.087462 TATGTCCGCATCGCTGGGAG 62.087 60.000 4.73 0.00 37.51 4.30
265 266 2.131067 TATGTCCGCATCGCTGGGA 61.131 57.895 4.73 0.00 37.51 4.37
267 268 1.217585 CTGTATGTCCGCATCGCTGG 61.218 60.000 0.00 0.00 36.58 4.85
268 269 0.249031 TCTGTATGTCCGCATCGCTG 60.249 55.000 0.00 0.00 36.58 5.18
269 270 0.249073 GTCTGTATGTCCGCATCGCT 60.249 55.000 0.00 0.00 36.58 4.93
270 271 1.215655 GGTCTGTATGTCCGCATCGC 61.216 60.000 0.00 0.00 36.58 4.58
271 272 0.385751 AGGTCTGTATGTCCGCATCG 59.614 55.000 0.00 0.00 36.58 3.84
272 273 1.600663 CGAGGTCTGTATGTCCGCATC 60.601 57.143 0.00 0.00 36.58 3.91
273 274 0.385751 CGAGGTCTGTATGTCCGCAT 59.614 55.000 0.00 0.00 39.03 4.73
274 275 0.678684 TCGAGGTCTGTATGTCCGCA 60.679 55.000 0.00 0.00 0.00 5.69
275 276 0.454600 TTCGAGGTCTGTATGTCCGC 59.545 55.000 0.00 0.00 0.00 5.54
294 295 4.711846 AGGGAGTCAAGCTTTGTTCTTTTT 59.288 37.500 0.00 0.00 0.00 1.94
295 296 4.281657 AGGGAGTCAAGCTTTGTTCTTTT 58.718 39.130 0.00 0.00 0.00 2.27
296 297 3.885901 GAGGGAGTCAAGCTTTGTTCTTT 59.114 43.478 0.00 0.00 0.00 2.52
297 298 3.481453 GAGGGAGTCAAGCTTTGTTCTT 58.519 45.455 0.00 0.00 0.00 2.52
298 299 2.548920 CGAGGGAGTCAAGCTTTGTTCT 60.549 50.000 0.00 0.00 0.00 3.01
300 301 1.884235 CGAGGGAGTCAAGCTTTGTT 58.116 50.000 0.00 0.00 0.00 2.83
301 302 0.603975 GCGAGGGAGTCAAGCTTTGT 60.604 55.000 0.00 0.00 0.00 2.83
302 303 1.301677 GGCGAGGGAGTCAAGCTTTG 61.302 60.000 0.00 0.00 0.00 2.77
303 304 1.003233 GGCGAGGGAGTCAAGCTTT 60.003 57.895 0.00 0.00 0.00 3.51
304 305 1.893919 GAGGCGAGGGAGTCAAGCTT 61.894 60.000 0.00 0.00 0.00 3.74
310 311 1.739049 CATGAGAGGCGAGGGAGTC 59.261 63.158 0.00 0.00 0.00 3.36
311 312 1.760086 CCATGAGAGGCGAGGGAGT 60.760 63.158 0.00 0.00 0.00 3.85
312 313 1.760086 ACCATGAGAGGCGAGGGAG 60.760 63.158 0.00 0.00 0.00 4.30
314 315 2.503061 CACCATGAGAGGCGAGGG 59.497 66.667 0.00 0.00 0.00 4.30
315 316 2.503061 CCACCATGAGAGGCGAGG 59.497 66.667 0.00 0.00 0.00 4.63
316 317 2.202987 GCCACCATGAGAGGCGAG 60.203 66.667 7.17 0.00 38.86 5.03
320 321 0.038744 ACTTTGGCCACCATGAGAGG 59.961 55.000 3.88 0.00 31.53 3.69
321 322 2.026822 ACTACTTTGGCCACCATGAGAG 60.027 50.000 3.88 0.00 31.53 3.20
322 323 1.985159 ACTACTTTGGCCACCATGAGA 59.015 47.619 3.88 0.00 31.53 3.27
323 324 2.086869 CACTACTTTGGCCACCATGAG 58.913 52.381 3.88 1.62 31.53 2.90
324 325 1.423541 ACACTACTTTGGCCACCATGA 59.576 47.619 3.88 0.00 31.53 3.07
325 326 1.541147 CACACTACTTTGGCCACCATG 59.459 52.381 3.88 0.45 31.53 3.66
326 327 1.547675 CCACACTACTTTGGCCACCAT 60.548 52.381 3.88 0.00 31.53 3.55
328 329 0.893727 CCCACACTACTTTGGCCACC 60.894 60.000 3.88 0.00 0.00 4.61
330 331 1.458486 CCCCACACTACTTTGGCCA 59.542 57.895 0.00 0.00 0.00 5.36
331 332 1.304134 CCCCCACACTACTTTGGCC 60.304 63.158 0.00 0.00 0.00 5.36
333 334 1.003928 GGTACCCCCACACTACTTTGG 59.996 57.143 0.00 0.00 0.00 3.28
350 351 7.533923 AGTAAAATTTTGGATCCTAGGGGTA 57.466 36.000 14.23 0.00 0.00 3.69
351 352 6.417503 AGTAAAATTTTGGATCCTAGGGGT 57.582 37.500 14.23 0.00 0.00 4.95
353 354 6.098266 CCCAAGTAAAATTTTGGATCCTAGGG 59.902 42.308 14.23 4.45 45.32 3.53
354 355 6.098266 CCCCAAGTAAAATTTTGGATCCTAGG 59.902 42.308 14.23 0.82 45.32 3.02
356 357 5.423931 GCCCCAAGTAAAATTTTGGATCCTA 59.576 40.000 14.23 1.56 45.32 2.94
357 358 4.225042 GCCCCAAGTAAAATTTTGGATCCT 59.775 41.667 14.23 0.00 45.32 3.24
359 360 4.180817 CGCCCCAAGTAAAATTTTGGATC 58.819 43.478 13.76 2.14 45.32 3.36
360 361 3.055458 CCGCCCCAAGTAAAATTTTGGAT 60.055 43.478 13.76 0.00 45.32 3.41
362 363 2.694213 CCGCCCCAAGTAAAATTTTGG 58.306 47.619 13.76 6.67 42.77 3.28
365 366 0.611200 GGCCGCCCCAAGTAAAATTT 59.389 50.000 0.00 0.00 0.00 1.82
366 367 1.600511 CGGCCGCCCCAAGTAAAATT 61.601 55.000 14.67 0.00 0.00 1.82
367 368 2.049767 CGGCCGCCCCAAGTAAAAT 61.050 57.895 14.67 0.00 0.00 1.82
368 369 2.673687 CGGCCGCCCCAAGTAAAA 60.674 61.111 14.67 0.00 0.00 1.52
388 389 3.248446 AATCGTGGGGTCGTGTGGG 62.248 63.158 0.00 0.00 0.00 4.61
389 390 2.032634 CAATCGTGGGGTCGTGTGG 61.033 63.158 0.00 0.00 0.00 4.17
390 391 0.391130 ATCAATCGTGGGGTCGTGTG 60.391 55.000 0.00 0.00 0.00 3.82
391 392 0.108329 GATCAATCGTGGGGTCGTGT 60.108 55.000 0.00 0.00 0.00 4.49
392 393 0.810031 GGATCAATCGTGGGGTCGTG 60.810 60.000 0.00 0.00 0.00 4.35
394 395 0.106708 ATGGATCAATCGTGGGGTCG 59.893 55.000 0.00 0.00 0.00 4.79
395 396 2.348411 AATGGATCAATCGTGGGGTC 57.652 50.000 0.00 0.00 0.00 4.46
397 398 3.820557 ACTTAATGGATCAATCGTGGGG 58.179 45.455 0.00 0.00 0.00 4.96
398 399 4.447724 CGTACTTAATGGATCAATCGTGGG 59.552 45.833 0.00 0.00 0.00 4.61
399 400 5.047847 ACGTACTTAATGGATCAATCGTGG 58.952 41.667 0.00 0.00 0.00 4.94
400 401 6.362551 CCTACGTACTTAATGGATCAATCGTG 59.637 42.308 3.24 0.00 0.00 4.35
401 402 6.263842 TCCTACGTACTTAATGGATCAATCGT 59.736 38.462 0.00 0.00 0.00 3.73
413 414 9.918630 GGCATTAATTAGATCCTACGTACTTAA 57.081 33.333 0.00 0.00 0.00 1.85
414 415 9.081204 TGGCATTAATTAGATCCTACGTACTTA 57.919 33.333 0.00 0.00 0.00 2.24
415 416 7.959175 TGGCATTAATTAGATCCTACGTACTT 58.041 34.615 0.00 0.00 0.00 2.24
416 417 7.534723 TGGCATTAATTAGATCCTACGTACT 57.465 36.000 0.00 0.00 0.00 2.73
417 418 8.033038 TCATGGCATTAATTAGATCCTACGTAC 58.967 37.037 0.00 0.00 0.00 3.67
418 419 8.129496 TCATGGCATTAATTAGATCCTACGTA 57.871 34.615 0.00 0.00 0.00 3.57
419 420 7.004555 TCATGGCATTAATTAGATCCTACGT 57.995 36.000 0.00 0.00 0.00 3.57
420 421 7.323420 TCTCATGGCATTAATTAGATCCTACG 58.677 38.462 0.00 0.00 0.00 3.51
421 422 8.317679 ACTCTCATGGCATTAATTAGATCCTAC 58.682 37.037 0.00 0.00 0.00 3.18
422 423 8.441311 ACTCTCATGGCATTAATTAGATCCTA 57.559 34.615 0.00 0.00 0.00 2.94
424 425 7.094463 CCAACTCTCATGGCATTAATTAGATCC 60.094 40.741 0.00 0.00 0.00 3.36
425 426 7.446625 ACCAACTCTCATGGCATTAATTAGATC 59.553 37.037 0.00 0.00 41.89 2.75
428 429 6.949352 ACCAACTCTCATGGCATTAATTAG 57.051 37.500 0.00 0.00 41.89 1.73
429 430 7.118723 AGAACCAACTCTCATGGCATTAATTA 58.881 34.615 0.00 0.00 41.89 1.40
430 431 5.954150 AGAACCAACTCTCATGGCATTAATT 59.046 36.000 0.00 0.00 41.89 1.40
431 432 5.513233 AGAACCAACTCTCATGGCATTAAT 58.487 37.500 0.00 0.00 41.89 1.40
432 433 4.922206 AGAACCAACTCTCATGGCATTAA 58.078 39.130 0.00 0.00 41.89 1.40
433 434 4.574674 AGAACCAACTCTCATGGCATTA 57.425 40.909 0.00 0.00 41.89 1.90
434 435 3.446442 AGAACCAACTCTCATGGCATT 57.554 42.857 0.00 0.00 41.89 3.56
435 436 4.265073 GTTAGAACCAACTCTCATGGCAT 58.735 43.478 0.00 0.00 41.89 4.40
437 438 2.673368 CGTTAGAACCAACTCTCATGGC 59.327 50.000 0.00 0.00 41.89 4.40
438 439 3.679980 CACGTTAGAACCAACTCTCATGG 59.320 47.826 0.00 0.00 43.84 3.66
439 440 4.307432 ACACGTTAGAACCAACTCTCATG 58.693 43.478 0.00 0.00 0.00 3.07
442 443 3.493503 CCAACACGTTAGAACCAACTCTC 59.506 47.826 0.00 0.00 0.00 3.20
443 444 3.118519 ACCAACACGTTAGAACCAACTCT 60.119 43.478 0.00 0.00 0.00 3.24
444 445 3.200483 ACCAACACGTTAGAACCAACTC 58.800 45.455 0.00 0.00 0.00 3.01
447 448 3.132925 GCTACCAACACGTTAGAACCAA 58.867 45.455 0.00 0.00 0.00 3.67
448 449 2.102757 TGCTACCAACACGTTAGAACCA 59.897 45.455 0.00 0.00 0.00 3.67
457 458 6.596015 AGGAACTAGGTTGCTACCAACACG 62.596 50.000 19.71 5.18 45.66 4.49
458 459 3.244457 AGGAACTAGGTTGCTACCAACAC 60.244 47.826 19.71 6.56 45.66 3.32
459 460 2.976882 AGGAACTAGGTTGCTACCAACA 59.023 45.455 19.71 3.35 45.66 3.33
460 461 4.813750 TAGGAACTAGGTTGCTACCAAC 57.186 45.455 19.71 5.58 42.11 3.77
463 464 6.412214 TCAAAATAGGAACTAGGTTGCTACC 58.588 40.000 9.54 9.54 45.99 3.18
464 465 7.328737 TCTCAAAATAGGAACTAGGTTGCTAC 58.671 38.462 12.40 0.00 45.99 3.58
469 470 7.093245 GAGACCTCTCAAAATAGGAACTAGGTT 60.093 40.741 0.00 0.00 42.96 3.50
471 472 6.609616 AGAGACCTCTCAAAATAGGAACTAGG 59.390 42.308 5.13 0.00 44.66 3.02
472 473 7.654022 AGAGACCTCTCAAAATAGGAACTAG 57.346 40.000 5.13 0.00 44.66 2.57
475 476 6.097696 AGCTAGAGACCTCTCAAAATAGGAAC 59.902 42.308 2.36 0.00 45.21 3.62
476 477 6.198639 AGCTAGAGACCTCTCAAAATAGGAA 58.801 40.000 2.36 0.00 45.21 3.36
478 479 5.278266 CGAGCTAGAGACCTCTCAAAATAGG 60.278 48.000 2.36 0.00 45.21 2.57
479 480 5.529430 TCGAGCTAGAGACCTCTCAAAATAG 59.471 44.000 2.36 0.00 45.21 1.73
480 481 5.437946 TCGAGCTAGAGACCTCTCAAAATA 58.562 41.667 2.36 0.00 45.21 1.40
481 482 4.274147 TCGAGCTAGAGACCTCTCAAAAT 58.726 43.478 2.36 0.00 45.21 1.82
482 483 3.687125 TCGAGCTAGAGACCTCTCAAAA 58.313 45.455 2.36 0.00 45.21 2.44
484 485 3.351794 TTCGAGCTAGAGACCTCTCAA 57.648 47.619 2.36 0.00 45.21 3.02
486 487 3.211045 ACATTCGAGCTAGAGACCTCTC 58.789 50.000 2.36 0.00 40.93 3.20
487 488 3.290948 ACATTCGAGCTAGAGACCTCT 57.709 47.619 4.81 4.81 43.40 3.69
488 489 4.517453 ACATACATTCGAGCTAGAGACCTC 59.483 45.833 0.00 0.00 0.00 3.85
489 490 4.465886 ACATACATTCGAGCTAGAGACCT 58.534 43.478 0.00 0.00 0.00 3.85
490 491 4.839668 ACATACATTCGAGCTAGAGACC 57.160 45.455 0.00 0.00 0.00 3.85
491 492 5.822278 TGAACATACATTCGAGCTAGAGAC 58.178 41.667 0.00 0.00 0.00 3.36
492 493 6.641169 ATGAACATACATTCGAGCTAGAGA 57.359 37.500 0.00 0.00 0.00 3.10
493 494 7.332003 GAATGAACATACATTCGAGCTAGAG 57.668 40.000 0.00 0.00 43.85 2.43
542 543 9.929722 CCGAGAATATTTCAAACGAATTTCATA 57.070 29.630 0.00 0.00 0.00 2.15
543 544 8.458843 ACCGAGAATATTTCAAACGAATTTCAT 58.541 29.630 0.00 0.00 0.00 2.57
545 546 9.931210 ATACCGAGAATATTTCAAACGAATTTC 57.069 29.630 0.00 0.00 0.00 2.17
548 549 9.931210 GAAATACCGAGAATATTTCAAACGAAT 57.069 29.630 10.98 0.00 43.76 3.34
549 550 9.158233 AGAAATACCGAGAATATTTCAAACGAA 57.842 29.630 15.98 0.00 45.46 3.85
550 551 8.712285 AGAAATACCGAGAATATTTCAAACGA 57.288 30.769 15.98 0.00 45.46 3.85
551 552 7.787935 CGAGAAATACCGAGAATATTTCAAACG 59.212 37.037 15.98 13.94 45.46 3.60
554 555 7.270047 ACCGAGAAATACCGAGAATATTTCAA 58.730 34.615 15.98 0.00 45.46 2.69
555 556 6.812998 ACCGAGAAATACCGAGAATATTTCA 58.187 36.000 15.98 0.00 45.46 2.69
556 557 8.697960 GTTACCGAGAAATACCGAGAATATTTC 58.302 37.037 8.71 8.71 44.27 2.17
558 559 7.150640 GGTTACCGAGAAATACCGAGAATATT 58.849 38.462 0.00 0.00 0.00 1.28
559 560 6.685657 GGTTACCGAGAAATACCGAGAATAT 58.314 40.000 0.00 0.00 0.00 1.28
561 562 4.941657 GGTTACCGAGAAATACCGAGAAT 58.058 43.478 0.00 0.00 0.00 2.40
562 563 4.376340 GGTTACCGAGAAATACCGAGAA 57.624 45.455 0.00 0.00 0.00 2.87
584 585 2.667969 GACCGGTAAACGTGGTTATCAC 59.332 50.000 7.34 0.00 42.24 3.06
585 586 2.353605 GGACCGGTAAACGTGGTTATCA 60.354 50.000 7.34 0.00 42.24 2.15
586 587 2.270923 GGACCGGTAAACGTGGTTATC 58.729 52.381 7.34 0.00 42.24 1.75
587 588 1.066215 GGGACCGGTAAACGTGGTTAT 60.066 52.381 7.34 0.00 42.24 1.89
588 589 0.320050 GGGACCGGTAAACGTGGTTA 59.680 55.000 7.34 0.00 42.24 2.85
589 590 1.071299 GGGACCGGTAAACGTGGTT 59.929 57.895 7.34 0.00 42.24 3.67
590 591 2.743060 GGGACCGGTAAACGTGGT 59.257 61.111 7.34 0.00 42.24 4.16
591 592 2.046988 GGGGACCGGTAAACGTGG 60.047 66.667 7.34 0.00 40.86 4.94
603 604 1.954382 GGCAATTTTATCGAGGGGGAC 59.046 52.381 0.00 0.00 0.00 4.46
604 605 1.476110 CGGCAATTTTATCGAGGGGGA 60.476 52.381 0.00 0.00 0.00 4.81
605 606 0.951558 CGGCAATTTTATCGAGGGGG 59.048 55.000 0.00 0.00 0.00 5.40
606 607 0.310854 GCGGCAATTTTATCGAGGGG 59.689 55.000 0.00 0.00 0.00 4.79
607 608 1.021202 TGCGGCAATTTTATCGAGGG 58.979 50.000 0.00 0.00 0.00 4.30
608 609 3.300009 GAATGCGGCAATTTTATCGAGG 58.700 45.455 6.82 0.00 0.00 4.63
609 610 2.966708 CGAATGCGGCAATTTTATCGAG 59.033 45.455 6.82 0.00 0.00 4.04
610 611 2.980586 CGAATGCGGCAATTTTATCGA 58.019 42.857 6.82 0.00 0.00 3.59
623 624 1.538075 AGGTTTTGGTTACCGAATGCG 59.462 47.619 4.72 0.00 40.69 4.73
624 625 3.313690 CAAGGTTTTGGTTACCGAATGC 58.686 45.455 4.72 1.86 40.69 3.56
636 637 1.480137 TGTGCTTGGACCAAGGTTTTG 59.520 47.619 30.87 10.07 41.31 2.44
639 640 1.145738 AGATGTGCTTGGACCAAGGTT 59.854 47.619 30.87 4.11 41.31 3.50
640 641 0.773644 AGATGTGCTTGGACCAAGGT 59.226 50.000 30.87 0.00 41.31 3.50
642 643 2.486472 AGAGATGTGCTTGGACCAAG 57.514 50.000 27.16 27.16 43.57 3.61
643 644 3.173151 TCTAGAGATGTGCTTGGACCAA 58.827 45.455 6.76 6.76 0.00 3.67
646 647 5.275067 AGAATCTAGAGATGTGCTTGGAC 57.725 43.478 0.00 0.00 34.49 4.02
664 665 5.396436 CCGGGTATTTGTGAAGGTAGAGAAT 60.396 44.000 0.00 0.00 0.00 2.40
665 666 4.081309 CCGGGTATTTGTGAAGGTAGAGAA 60.081 45.833 0.00 0.00 0.00 2.87
666 667 3.449737 CCGGGTATTTGTGAAGGTAGAGA 59.550 47.826 0.00 0.00 0.00 3.10
668 669 2.093341 GCCGGGTATTTGTGAAGGTAGA 60.093 50.000 2.18 0.00 0.00 2.59
669 670 2.285977 GCCGGGTATTTGTGAAGGTAG 58.714 52.381 2.18 0.00 0.00 3.18
671 672 0.323087 GGCCGGGTATTTGTGAAGGT 60.323 55.000 2.18 0.00 0.00 3.50
680 681 0.034477 CTCAGGTTTGGCCGGGTATT 60.034 55.000 2.18 0.00 43.70 1.89
687 688 1.376037 CTCCGTCTCAGGTTTGGCC 60.376 63.158 0.00 0.00 37.58 5.36
729 730 3.893813 CCCTGATTTCCATGGAGATTTCC 59.106 47.826 18.31 7.27 44.31 3.13
733 734 2.444766 GGACCCTGATTTCCATGGAGAT 59.555 50.000 17.38 17.38 34.96 2.75
760 761 4.491676 TGCGTGAGACTAGGTAAAATGTC 58.508 43.478 0.00 0.00 0.00 3.06
762 763 4.260375 GCATGCGTGAGACTAGGTAAAATG 60.260 45.833 10.93 0.00 0.00 2.32
763 764 3.871594 GCATGCGTGAGACTAGGTAAAAT 59.128 43.478 10.93 0.00 0.00 1.82
764 765 3.259064 GCATGCGTGAGACTAGGTAAAA 58.741 45.455 10.93 0.00 0.00 1.52
765 766 2.232696 TGCATGCGTGAGACTAGGTAAA 59.767 45.455 14.09 0.00 0.00 2.01
766 767 1.822371 TGCATGCGTGAGACTAGGTAA 59.178 47.619 14.09 0.00 0.00 2.85
767 768 1.134367 GTGCATGCGTGAGACTAGGTA 59.866 52.381 14.09 0.00 0.00 3.08
791 816 3.769844 GTGAGATCCTACAAACCAGGAGA 59.230 47.826 0.00 0.00 45.27 3.71
826 851 0.034059 GGATGACCGTATGCCCTCTG 59.966 60.000 0.00 0.00 0.00 3.35
841 866 0.310543 CGCGAGAGAAGGAGAGGATG 59.689 60.000 0.00 0.00 0.00 3.51
843 868 2.115911 GCGCGAGAGAAGGAGAGGA 61.116 63.158 12.10 0.00 0.00 3.71
901 926 0.179145 AGATTAGCGACGAACACGGG 60.179 55.000 0.00 0.00 0.00 5.28
905 930 3.863424 GGAAATGAGATTAGCGACGAACA 59.137 43.478 0.00 0.00 0.00 3.18
920 945 1.546773 CGAGGGGTTTGTGGGAAATGA 60.547 52.381 0.00 0.00 0.00 2.57
958 991 1.994507 CTCCTCGATCGCACTCGGTT 61.995 60.000 11.09 0.00 39.13 4.44
959 992 2.437895 TCCTCGATCGCACTCGGT 60.438 61.111 11.09 0.00 39.13 4.69
961 994 1.499688 TAGCTCCTCGATCGCACTCG 61.500 60.000 11.09 0.00 39.99 4.18
962 995 0.237235 CTAGCTCCTCGATCGCACTC 59.763 60.000 11.09 0.00 0.00 3.51
963 996 1.791103 GCTAGCTCCTCGATCGCACT 61.791 60.000 11.09 5.41 0.00 4.40
965 998 2.897922 CGCTAGCTCCTCGATCGCA 61.898 63.158 13.93 0.00 0.00 5.10
966 999 2.127042 CGCTAGCTCCTCGATCGC 60.127 66.667 13.93 0.00 0.00 4.58
967 1000 0.029567 AAACGCTAGCTCCTCGATCG 59.970 55.000 13.93 9.36 0.00 3.69
968 1001 1.600912 GGAAACGCTAGCTCCTCGATC 60.601 57.143 13.93 1.51 0.00 3.69
969 1002 0.386113 GGAAACGCTAGCTCCTCGAT 59.614 55.000 13.93 0.00 0.00 3.59
970 1003 1.664321 GGGAAACGCTAGCTCCTCGA 61.664 60.000 18.15 0.00 0.00 4.04
1010 3650 1.672356 GAGGGCAGCACATTGTCGT 60.672 57.895 0.00 0.00 0.00 4.34
1014 3654 3.818787 GGCGAGGGCAGCACATTG 61.819 66.667 0.00 0.00 42.47 2.82
1404 4059 8.053963 ACTCATCAACTAGCCTATATATACGGT 58.946 37.037 0.00 5.00 0.00 4.83
1405 4060 8.453238 ACTCATCAACTAGCCTATATATACGG 57.547 38.462 0.00 0.00 0.00 4.02
1423 4128 4.081642 GGGAAACACTAGTGCTACTCATCA 60.082 45.833 22.90 0.00 0.00 3.07
1435 4140 4.326826 TGAGCTCAATTGGGAAACACTAG 58.673 43.478 15.67 0.00 0.00 2.57
1446 4151 6.258899 CAGATGAAAGTGATGAGCTCAATTG 58.741 40.000 22.50 0.00 41.09 2.32
1447 4152 5.163642 GCAGATGAAAGTGATGAGCTCAATT 60.164 40.000 22.50 4.69 43.66 2.32
1556 4288 1.079503 GAGGCAGCCTAAACGAGTTG 58.920 55.000 16.16 0.00 31.76 3.16
1618 4359 2.814183 AAGACCGGCGACAACTAGCG 62.814 60.000 9.30 0.00 0.00 4.26
1715 4456 0.947960 TCGCGTGCATTCCAAAGAAA 59.052 45.000 5.77 0.00 35.09 2.52
1718 4459 1.509787 CGTCGCGTGCATTCCAAAG 60.510 57.895 5.77 0.00 0.00 2.77
1743 4484 4.039730 TGCTAGAGCTGGGATGATAAGAAC 59.960 45.833 2.72 0.00 42.66 3.01
1864 4617 6.095860 TCAGTGAGCCATATGATTTTTCCAAG 59.904 38.462 3.65 0.00 0.00 3.61
1872 4625 6.013119 TCCATGTATCAGTGAGCCATATGATT 60.013 38.462 3.65 0.00 34.38 2.57
1918 5110 7.769507 TCAAATACCAACACAACTACACAAGTA 59.230 33.333 0.00 0.00 37.50 2.24
1919 5111 6.600032 TCAAATACCAACACAACTACACAAGT 59.400 34.615 0.00 0.00 41.49 3.16
1920 5112 7.022055 TCAAATACCAACACAACTACACAAG 57.978 36.000 0.00 0.00 0.00 3.16
1921 5113 7.283354 TCATCAAATACCAACACAACTACACAA 59.717 33.333 0.00 0.00 0.00 3.33
1924 5116 7.663493 TCATCATCAAATACCAACACAACTACA 59.337 33.333 0.00 0.00 0.00 2.74
1925 5117 8.039603 TCATCATCAAATACCAACACAACTAC 57.960 34.615 0.00 0.00 0.00 2.73
1928 5120 8.761575 AAATCATCATCAAATACCAACACAAC 57.238 30.769 0.00 0.00 0.00 3.32
1966 5194 3.247411 TGAATGCTAATACGCAATGACCG 59.753 43.478 0.00 0.00 44.06 4.79
2046 5281 6.533723 TGTCGTAACAAAAGCATATGGTAGAG 59.466 38.462 8.04 3.57 30.70 2.43
2137 6621 1.488705 AACAATCACAGGGGGCGAGA 61.489 55.000 0.00 0.00 0.00 4.04
2138 6622 1.002134 AACAATCACAGGGGGCGAG 60.002 57.895 0.00 0.00 0.00 5.03
2173 6657 5.178061 TGCAAACATCGTTATGATCTCACT 58.822 37.500 0.00 0.00 34.13 3.41
2174 6658 5.469373 TGCAAACATCGTTATGATCTCAC 57.531 39.130 0.00 0.00 34.13 3.51
2181 6665 3.792956 GGAAGCATGCAAACATCGTTATG 59.207 43.478 21.98 0.00 39.17 1.90
2226 6711 8.028354 AGTAATTATCAATGATGAGAGCTCTCG 58.972 37.037 32.86 20.24 45.72 4.04
2257 6742 2.806434 TGGGTCATTCCATTGGTTCTG 58.194 47.619 1.86 0.00 38.11 3.02
2258 6743 3.541242 TTGGGTCATTCCATTGGTTCT 57.459 42.857 1.86 0.00 36.58 3.01
2259 6744 3.515104 ACATTGGGTCATTCCATTGGTTC 59.485 43.478 1.86 0.00 40.52 3.62
2271 6758 3.902881 AAACTTGCAAACATTGGGTCA 57.097 38.095 0.00 0.00 0.00 4.02
2284 6771 6.428385 ACTCATGCTATACTCAAAACTTGC 57.572 37.500 0.00 0.00 0.00 4.01
2295 6782 8.185505 GCCAAGTAGAGTATACTCATGCTATAC 58.814 40.741 29.85 21.71 45.21 1.47
2299 6786 5.010516 CAGCCAAGTAGAGTATACTCATGCT 59.989 44.000 29.85 22.74 45.21 3.79
2474 8748 3.923017 ACAGCACTTCTACCAAAATGC 57.077 42.857 0.00 0.00 0.00 3.56
2492 8766 0.758734 CAGGGGACAGAGACACAACA 59.241 55.000 0.00 0.00 0.00 3.33
2493 8767 0.759346 ACAGGGGACAGAGACACAAC 59.241 55.000 0.00 0.00 0.00 3.32
2600 13324 6.405065 CCACCTTAAAGTACTAGATGTGCGTA 60.405 42.308 0.00 0.00 36.37 4.42
2631 13367 2.102757 TCTACCAAAACGTAGTGGCACA 59.897 45.455 21.41 2.83 45.00 4.57
2632 13368 2.477754 GTCTACCAAAACGTAGTGGCAC 59.522 50.000 10.29 10.29 45.00 5.01
2642 13378 4.812626 TCTCAAAGGAACGTCTACCAAAAC 59.187 41.667 8.63 0.00 0.00 2.43
2670 13409 1.854126 CAAACTTGCAACGCCAGAAAG 59.146 47.619 0.00 0.00 0.00 2.62
2689 13428 6.691754 ACAAAACACACAACTGATGATACA 57.308 33.333 0.00 0.00 0.00 2.29
2711 13450 3.995048 GTCCTTTCAGTTGGTAGTGCTAC 59.005 47.826 0.95 0.95 35.40 3.58
2761 13500 8.533569 AAAATGGTCTACCTTTTCTTTCAAGA 57.466 30.769 12.01 0.00 40.96 3.02
2762 13501 8.633561 AGAAAATGGTCTACCTTTTCTTTCAAG 58.366 33.333 21.18 0.00 43.12 3.02
2763 13502 8.533569 AGAAAATGGTCTACCTTTTCTTTCAA 57.466 30.769 21.18 0.00 43.12 2.69
2764 13503 9.063615 GTAGAAAATGGTCTACCTTTTCTTTCA 57.936 33.333 26.35 15.98 43.12 2.69
2775 13514 8.451908 AATGCATAAGGTAGAAAATGGTCTAC 57.548 34.615 0.00 7.30 46.27 2.59
2776 13515 8.271458 TGAATGCATAAGGTAGAAAATGGTCTA 58.729 33.333 0.00 0.00 0.00 2.59
2777 13516 7.118723 TGAATGCATAAGGTAGAAAATGGTCT 58.881 34.615 0.00 0.00 0.00 3.85
2778 13517 7.333528 TGAATGCATAAGGTAGAAAATGGTC 57.666 36.000 0.00 0.00 0.00 4.02
2779 13518 7.716799 TTGAATGCATAAGGTAGAAAATGGT 57.283 32.000 0.00 0.00 0.00 3.55
2780 13519 8.872845 GTTTTGAATGCATAAGGTAGAAAATGG 58.127 33.333 0.00 0.00 0.00 3.16
2781 13520 8.586273 CGTTTTGAATGCATAAGGTAGAAAATG 58.414 33.333 0.00 0.56 0.00 2.32
2782 13521 7.759433 CCGTTTTGAATGCATAAGGTAGAAAAT 59.241 33.333 0.00 0.00 0.00 1.82
2783 13522 7.087639 CCGTTTTGAATGCATAAGGTAGAAAA 58.912 34.615 0.00 0.00 0.00 2.29
2784 13523 6.349777 CCCGTTTTGAATGCATAAGGTAGAAA 60.350 38.462 0.00 0.00 0.00 2.52
2785 13524 5.124776 CCCGTTTTGAATGCATAAGGTAGAA 59.875 40.000 0.00 0.00 0.00 2.10
2786 13525 4.638421 CCCGTTTTGAATGCATAAGGTAGA 59.362 41.667 0.00 0.00 0.00 2.59
2787 13526 4.202010 CCCCGTTTTGAATGCATAAGGTAG 60.202 45.833 0.00 0.00 0.00 3.18
2788 13527 3.697045 CCCCGTTTTGAATGCATAAGGTA 59.303 43.478 0.00 0.00 0.00 3.08
2789 13528 2.495669 CCCCGTTTTGAATGCATAAGGT 59.504 45.455 0.00 0.00 0.00 3.50
2790 13529 2.757868 TCCCCGTTTTGAATGCATAAGG 59.242 45.455 0.00 0.00 0.00 2.69
2791 13530 3.694072 TCTCCCCGTTTTGAATGCATAAG 59.306 43.478 0.00 0.00 0.00 1.73
2792 13531 3.442273 GTCTCCCCGTTTTGAATGCATAA 59.558 43.478 0.00 0.00 0.00 1.90
2793 13532 3.013921 GTCTCCCCGTTTTGAATGCATA 58.986 45.455 0.00 0.00 0.00 3.14
2794 13533 1.818674 GTCTCCCCGTTTTGAATGCAT 59.181 47.619 0.00 0.00 0.00 3.96
2795 13534 1.202879 AGTCTCCCCGTTTTGAATGCA 60.203 47.619 0.00 0.00 0.00 3.96
2796 13535 1.468914 GAGTCTCCCCGTTTTGAATGC 59.531 52.381 0.00 0.00 0.00 3.56
2797 13536 2.084546 GGAGTCTCCCCGTTTTGAATG 58.915 52.381 7.78 0.00 0.00 2.67
2798 13537 1.338769 CGGAGTCTCCCCGTTTTGAAT 60.339 52.381 13.54 0.00 41.91 2.57
2799 13538 0.034337 CGGAGTCTCCCCGTTTTGAA 59.966 55.000 13.54 0.00 41.91 2.69
2800 13539 0.828762 TCGGAGTCTCCCCGTTTTGA 60.829 55.000 13.54 0.00 46.53 2.69
2801 13540 0.034337 TTCGGAGTCTCCCCGTTTTG 59.966 55.000 13.54 0.00 46.53 2.44
2802 13541 0.981943 ATTCGGAGTCTCCCCGTTTT 59.018 50.000 13.54 0.00 46.53 2.43
2803 13542 0.981943 AATTCGGAGTCTCCCCGTTT 59.018 50.000 13.54 0.00 46.53 3.60
2804 13543 0.535797 GAATTCGGAGTCTCCCCGTT 59.464 55.000 13.54 5.27 46.53 4.44
2805 13544 2.200052 GAATTCGGAGTCTCCCCGT 58.800 57.895 13.54 0.00 46.53 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.