Multiple sequence alignment - TraesCS2B01G139600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G139600 chr2B 100.000 3108 0 0 1 3108 106163770 106160663 0.000000e+00 5740.0
1 TraesCS2B01G139600 chr2B 78.996 1195 199 38 941 2104 106619489 106620662 0.000000e+00 769.0
2 TraesCS2B01G139600 chr2B 78.408 1181 204 37 947 2104 106149327 106148175 0.000000e+00 721.0
3 TraesCS2B01G139600 chr2B 77.934 1210 220 32 915 2104 106717791 106718973 0.000000e+00 712.0
4 TraesCS2B01G139600 chr2B 89.254 456 34 8 231 678 742451851 742451403 9.740000e-155 556.0
5 TraesCS2B01G139600 chr2B 77.764 823 156 18 1302 2104 106751052 106751867 6.030000e-132 481.0
6 TraesCS2B01G139600 chr2B 77.978 722 134 18 1302 2003 106429374 106430090 2.210000e-116 429.0
7 TraesCS2B01G139600 chr2B 93.519 216 14 0 1 216 742452050 742451835 3.870000e-84 322.0
8 TraesCS2B01G139600 chr2B 88.764 89 4 4 591 678 526898012 526898095 1.520000e-18 104.0
9 TraesCS2B01G139600 chr2D 93.710 1415 63 11 735 2145 70376309 70377701 0.000000e+00 2097.0
10 TraesCS2B01G139600 chr2D 91.911 853 30 13 2206 3048 70377716 70378539 0.000000e+00 1157.0
11 TraesCS2B01G139600 chr2D 79.466 1198 185 40 937 2104 70464150 70465316 0.000000e+00 793.0
12 TraesCS2B01G139600 chr2D 79.125 1188 197 37 947 2104 70511533 70512699 0.000000e+00 773.0
13 TraesCS2B01G139600 chr2D 79.951 823 140 14 1302 2104 69962180 69961363 1.610000e-162 582.0
14 TraesCS2B01G139600 chr2D 80.544 699 125 9 1414 2104 70460540 70461235 7.630000e-146 527.0
15 TraesCS2B01G139600 chr2D 84.946 279 42 0 1826 2104 70512733 70513011 1.820000e-72 283.0
16 TraesCS2B01G139600 chr2D 90.278 216 21 0 1 216 199140995 199141210 1.820000e-72 283.0
17 TraesCS2B01G139600 chr2D 79.177 389 75 5 1539 1927 81152422 81152040 6.610000e-67 265.0
18 TraesCS2B01G139600 chr2D 94.667 75 4 0 679 753 70376220 70376294 1.960000e-22 117.0
19 TraesCS2B01G139600 chr1A 85.938 448 52 5 231 678 309752252 309751816 4.690000e-128 468.0
20 TraesCS2B01G139600 chr1A 90.868 219 17 2 1 216 309752454 309752236 1.090000e-74 291.0
21 TraesCS2B01G139600 chr7D 91.697 277 23 0 231 507 416811837 416812113 4.860000e-103 385.0
22 TraesCS2B01G139600 chr7D 91.204 216 19 0 1 216 416811638 416811853 8.430000e-76 294.0
23 TraesCS2B01G139600 chrUn 85.522 297 36 5 383 678 335714805 335714515 1.400000e-78 303.0
24 TraesCS2B01G139600 chrUn 86.170 282 32 5 398 678 351191957 351191682 6.520000e-77 298.0
25 TraesCS2B01G139600 chr5B 86.170 282 32 5 398 678 1158746 1158471 6.520000e-77 298.0
26 TraesCS2B01G139600 chr5B 85.000 300 38 5 380 678 6021213 6021506 6.520000e-77 298.0
27 TraesCS2B01G139600 chr2A 78.920 389 76 5 1539 1927 81660180 81659798 3.070000e-65 259.0
28 TraesCS2B01G139600 chr4B 86.387 191 26 0 4 194 454694811 454694621 3.140000e-50 209.0
29 TraesCS2B01G139600 chr7B 78.571 280 52 6 399 677 591523216 591522944 8.860000e-41 178.0
30 TraesCS2B01G139600 chr3A 96.078 51 1 1 628 678 44691853 44691902 7.140000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G139600 chr2B 106160663 106163770 3107 True 5740.000000 5740 100.000000 1 3108 1 chr2B.!!$R2 3107
1 TraesCS2B01G139600 chr2B 106619489 106620662 1173 False 769.000000 769 78.996000 941 2104 1 chr2B.!!$F2 1163
2 TraesCS2B01G139600 chr2B 106148175 106149327 1152 True 721.000000 721 78.408000 947 2104 1 chr2B.!!$R1 1157
3 TraesCS2B01G139600 chr2B 106717791 106718973 1182 False 712.000000 712 77.934000 915 2104 1 chr2B.!!$F3 1189
4 TraesCS2B01G139600 chr2B 106751052 106751867 815 False 481.000000 481 77.764000 1302 2104 1 chr2B.!!$F4 802
5 TraesCS2B01G139600 chr2B 742451403 742452050 647 True 439.000000 556 91.386500 1 678 2 chr2B.!!$R3 677
6 TraesCS2B01G139600 chr2B 106429374 106430090 716 False 429.000000 429 77.978000 1302 2003 1 chr2B.!!$F1 701
7 TraesCS2B01G139600 chr2D 70376220 70378539 2319 False 1123.666667 2097 93.429333 679 3048 3 chr2D.!!$F2 2369
8 TraesCS2B01G139600 chr2D 70460540 70465316 4776 False 660.000000 793 80.005000 937 2104 2 chr2D.!!$F3 1167
9 TraesCS2B01G139600 chr2D 69961363 69962180 817 True 582.000000 582 79.951000 1302 2104 1 chr2D.!!$R1 802
10 TraesCS2B01G139600 chr2D 70511533 70513011 1478 False 528.000000 773 82.035500 947 2104 2 chr2D.!!$F4 1157
11 TraesCS2B01G139600 chr1A 309751816 309752454 638 True 379.500000 468 88.403000 1 678 2 chr1A.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 817 1.00006 GCATCTTCCAAAAGCTGTGCA 60.0 47.619 0.0 0.0 36.24 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 5221 0.106769 TGAGCACTTTTCCAGCCACA 60.107 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.215382 CACGGCGGATCTCACTTGA 59.785 57.895 13.24 0.00 0.00 3.02
81 82 3.504863 CCCTCACAATGCAAATTCTTCG 58.495 45.455 0.00 0.00 0.00 3.79
119 120 1.542030 GATAGATGCTGGACGTCGGAT 59.458 52.381 9.92 3.10 39.47 4.18
159 160 2.279186 CGCATCGGGATACGTGCA 60.279 61.111 0.00 0.00 44.27 4.57
207 211 6.711277 TCTATCAACCACATCTTGCTTACTT 58.289 36.000 0.00 0.00 0.00 2.24
208 212 5.633830 ATCAACCACATCTTGCTTACTTG 57.366 39.130 0.00 0.00 0.00 3.16
209 213 4.460263 TCAACCACATCTTGCTTACTTGT 58.540 39.130 0.00 0.00 0.00 3.16
210 214 4.275689 TCAACCACATCTTGCTTACTTGTG 59.724 41.667 0.00 0.00 37.90 3.33
211 215 3.820557 ACCACATCTTGCTTACTTGTGT 58.179 40.909 0.00 0.00 36.75 3.72
212 216 4.207165 ACCACATCTTGCTTACTTGTGTT 58.793 39.130 0.00 0.00 36.75 3.32
213 217 4.644685 ACCACATCTTGCTTACTTGTGTTT 59.355 37.500 0.00 0.00 36.75 2.83
214 218 5.127031 ACCACATCTTGCTTACTTGTGTTTT 59.873 36.000 0.00 0.00 36.75 2.43
215 219 6.042143 CCACATCTTGCTTACTTGTGTTTTT 58.958 36.000 0.00 0.00 36.75 1.94
352 356 2.032681 GCGGCAAGAGTGGACCTT 59.967 61.111 0.00 0.00 0.00 3.50
372 376 5.010282 CCTTACAAAGCCAGTACAAAGGAT 58.990 41.667 0.00 0.00 0.00 3.24
406 410 4.169856 TCCTTGGGCTTATATTGTGGGAAT 59.830 41.667 0.00 0.00 0.00 3.01
420 424 3.010027 TGTGGGAATTATGGAAGCACAGA 59.990 43.478 0.00 0.00 0.00 3.41
483 495 4.740695 GCGCTACTTGGTAGAATTAGACTG 59.259 45.833 0.00 0.00 38.29 3.51
493 505 6.731919 TGGTAGAATTAGACTGGAGGGTTTAA 59.268 38.462 0.00 0.00 0.00 1.52
616 628 4.328536 TGTAACTAACGGTGGATGCATTT 58.671 39.130 0.00 0.00 0.00 2.32
723 738 9.257651 GTACCACTGTATACCATCATAGTTTTC 57.742 37.037 0.00 0.00 0.00 2.29
756 804 3.262420 AGACGTAACCACATGCATCTTC 58.738 45.455 0.00 0.00 0.00 2.87
769 817 1.000060 GCATCTTCCAAAAGCTGTGCA 60.000 47.619 0.00 0.00 36.24 4.57
801 849 2.798283 CGTGTTTCTTCCTACGCAAGAA 59.202 45.455 0.00 0.00 37.96 2.52
810 858 5.642063 TCTTCCTACGCAAGAACATAAAAGG 59.358 40.000 0.00 0.00 43.62 3.11
892 940 7.712204 TTCTTTCTACAAAACCCTTCAAACT 57.288 32.000 0.00 0.00 0.00 2.66
944 3615 6.464222 ACACGTATGGATAAATGGATCGATT 58.536 36.000 0.00 0.00 0.00 3.34
945 3616 6.590292 ACACGTATGGATAAATGGATCGATTC 59.410 38.462 3.21 0.00 0.00 2.52
1007 3678 3.517901 ACGTGGGAGAAATTCATGGAGTA 59.482 43.478 0.00 0.00 0.00 2.59
1041 3718 4.953868 TTGGTCGCGGTCGTGGTG 62.954 66.667 6.13 0.00 36.96 4.17
1133 3810 2.105649 GTCATGGAGGAGGGGATTTCTC 59.894 54.545 0.00 0.00 0.00 2.87
1218 3895 2.202623 GCAGGGAGCTACACGTCG 60.203 66.667 0.00 0.00 41.15 5.12
1234 3911 1.596464 CGTCGGTCGTCCTTGCTATAC 60.596 57.143 0.00 0.00 34.52 1.47
1236 3913 0.659427 CGGTCGTCCTTGCTATACGA 59.341 55.000 0.00 0.00 42.83 3.43
1237 3914 1.266175 CGGTCGTCCTTGCTATACGAT 59.734 52.381 8.59 0.00 46.12 3.73
1239 3916 3.306818 GGTCGTCCTTGCTATACGATTC 58.693 50.000 8.59 3.02 46.12 2.52
1240 3917 3.306818 GTCGTCCTTGCTATACGATTCC 58.693 50.000 8.59 0.00 46.12 3.01
1241 3918 2.953648 TCGTCCTTGCTATACGATTCCA 59.046 45.455 0.00 0.00 40.43 3.53
1242 3919 3.572682 TCGTCCTTGCTATACGATTCCAT 59.427 43.478 0.00 0.00 40.43 3.41
1243 3920 4.763279 TCGTCCTTGCTATACGATTCCATA 59.237 41.667 0.00 0.00 40.43 2.74
1244 3921 5.417894 TCGTCCTTGCTATACGATTCCATAT 59.582 40.000 0.00 0.00 40.43 1.78
1245 3922 6.071560 TCGTCCTTGCTATACGATTCCATATT 60.072 38.462 0.00 0.00 40.43 1.28
1246 3923 6.035005 CGTCCTTGCTATACGATTCCATATTG 59.965 42.308 0.00 0.00 38.89 1.90
1247 3924 5.874810 TCCTTGCTATACGATTCCATATTGC 59.125 40.000 0.00 0.00 32.35 3.56
1248 3925 5.643348 CCTTGCTATACGATTCCATATTGCA 59.357 40.000 0.00 7.28 37.62 4.08
1288 3973 7.458397 TGTACTCCTTCCAAGATGTTTACATT 58.542 34.615 0.00 0.00 36.57 2.71
1295 3980 4.586421 TCCAAGATGTTTACATTTGGTGCA 59.414 37.500 22.05 10.99 40.81 4.57
1296 3981 4.685628 CCAAGATGTTTACATTTGGTGCAC 59.314 41.667 8.80 8.80 38.38 4.57
1297 3982 4.159377 AGATGTTTACATTTGGTGCACG 57.841 40.909 11.45 0.00 36.57 5.34
1298 3983 3.568007 AGATGTTTACATTTGGTGCACGT 59.432 39.130 11.45 5.11 36.57 4.49
1299 3984 3.071786 TGTTTACATTTGGTGCACGTG 57.928 42.857 12.28 12.28 0.00 4.49
1316 4001 2.352805 GGTGCAGGGAGAAGGTGG 59.647 66.667 0.00 0.00 0.00 4.61
1449 4147 2.494918 GACGTACCAGAGCGCCAT 59.505 61.111 2.29 0.00 0.00 4.40
1660 4358 2.121538 CGACTGCTCCATCGAGGGA 61.122 63.158 19.23 19.23 40.86 4.20
1717 4415 2.183300 GACGGCTGCACCATCGTA 59.817 61.111 0.50 0.00 39.03 3.43
1735 4433 1.966901 TATCCAACATGCCGCCGTCT 61.967 55.000 0.00 0.00 0.00 4.18
1822 4523 3.948719 TTCAAGGGCGGCGAGGTT 61.949 61.111 12.98 0.00 0.00 3.50
1888 4593 1.607628 GCCACGGTCGTCTACTATCAT 59.392 52.381 0.00 0.00 0.00 2.45
1903 4608 8.031864 GTCTACTATCATGTGAATATGTCCAGG 58.968 40.741 0.00 0.00 0.00 4.45
1939 4644 1.304381 GTGGGAGGCATGGAAAGCA 60.304 57.895 0.00 0.00 0.00 3.91
1942 4647 0.106318 GGGAGGCATGGAAAGCAGAT 60.106 55.000 0.00 0.00 0.00 2.90
1957 4662 2.346803 GCAGATGGCGAGACTAACAAA 58.653 47.619 0.00 0.00 0.00 2.83
2113 5130 3.671971 GCGAGCAGCCATACTAGTATGAG 60.672 52.174 34.61 26.24 41.97 2.90
2120 5137 4.744795 CCATACTAGTATGAGATGGCCC 57.255 50.000 34.61 0.00 44.22 5.80
2133 5150 3.068691 GGCCCGGCCTTCTTTTCC 61.069 66.667 22.31 0.00 46.69 3.13
2145 5162 4.199310 CCTTCTTTTCCACAACTCACTCA 58.801 43.478 0.00 0.00 0.00 3.41
2148 5165 4.780815 TCTTTTCCACAACTCACTCATGT 58.219 39.130 0.00 0.00 0.00 3.21
2151 5168 6.998074 TCTTTTCCACAACTCACTCATGTATT 59.002 34.615 0.00 0.00 0.00 1.89
2153 5170 8.684386 TTTTCCACAACTCACTCATGTATTTA 57.316 30.769 0.00 0.00 0.00 1.40
2154 5171 7.905604 TTCCACAACTCACTCATGTATTTAG 57.094 36.000 0.00 0.00 0.00 1.85
2155 5172 7.239763 TCCACAACTCACTCATGTATTTAGA 57.760 36.000 0.00 0.00 0.00 2.10
2156 5173 7.851228 TCCACAACTCACTCATGTATTTAGAT 58.149 34.615 0.00 0.00 0.00 1.98
2157 5174 8.321353 TCCACAACTCACTCATGTATTTAGATT 58.679 33.333 0.00 0.00 0.00 2.40
2158 5175 8.950210 CCACAACTCACTCATGTATTTAGATTT 58.050 33.333 0.00 0.00 0.00 2.17
2159 5176 9.764870 CACAACTCACTCATGTATTTAGATTTG 57.235 33.333 0.00 0.00 0.00 2.32
2160 5177 9.507329 ACAACTCACTCATGTATTTAGATTTGT 57.493 29.630 0.00 0.00 0.00 2.83
2166 5183 9.988350 CACTCATGTATTTAGATTTGTAACACC 57.012 33.333 0.00 0.00 0.00 4.16
2167 5184 9.733556 ACTCATGTATTTAGATTTGTAACACCA 57.266 29.630 0.00 0.00 0.00 4.17
2179 5196 9.131791 AGATTTGTAACACCAATCTGTAAAAGT 57.868 29.630 6.35 0.00 0.00 2.66
2180 5197 9.180678 GATTTGTAACACCAATCTGTAAAAGTG 57.819 33.333 0.00 0.00 0.00 3.16
2181 5198 6.067263 TGTAACACCAATCTGTAAAAGTGC 57.933 37.500 0.00 0.00 0.00 4.40
2182 5199 5.825679 TGTAACACCAATCTGTAAAAGTGCT 59.174 36.000 0.00 0.00 0.00 4.40
2183 5200 5.438761 AACACCAATCTGTAAAAGTGCTC 57.561 39.130 0.00 0.00 0.00 4.26
2184 5201 4.460263 ACACCAATCTGTAAAAGTGCTCA 58.540 39.130 0.00 0.00 0.00 4.26
2185 5202 4.887071 ACACCAATCTGTAAAAGTGCTCAA 59.113 37.500 0.00 0.00 0.00 3.02
2186 5203 5.215160 CACCAATCTGTAAAAGTGCTCAAC 58.785 41.667 0.00 0.00 0.00 3.18
2187 5204 5.009010 CACCAATCTGTAAAAGTGCTCAACT 59.991 40.000 0.00 0.00 42.60 3.16
2188 5205 6.204688 CACCAATCTGTAAAAGTGCTCAACTA 59.795 38.462 0.00 0.00 38.56 2.24
2189 5206 6.942576 ACCAATCTGTAAAAGTGCTCAACTAT 59.057 34.615 0.00 0.00 38.56 2.12
2190 5207 8.100791 ACCAATCTGTAAAAGTGCTCAACTATA 58.899 33.333 0.00 0.00 38.56 1.31
2191 5208 8.391106 CCAATCTGTAAAAGTGCTCAACTATAC 58.609 37.037 0.00 0.00 38.56 1.47
2192 5209 9.155975 CAATCTGTAAAAGTGCTCAACTATACT 57.844 33.333 0.00 0.00 38.56 2.12
2193 5210 9.726438 AATCTGTAAAAGTGCTCAACTATACTT 57.274 29.630 0.00 0.00 38.56 2.24
2194 5211 9.726438 ATCTGTAAAAGTGCTCAACTATACTTT 57.274 29.630 0.00 0.00 43.11 2.66
2196 5213 9.813080 CTGTAAAAGTGCTCAACTATACTTTTC 57.187 33.333 14.80 9.23 45.18 2.29
2197 5214 8.780249 TGTAAAAGTGCTCAACTATACTTTTCC 58.220 33.333 14.80 7.02 45.18 3.13
2198 5215 7.817418 AAAAGTGCTCAACTATACTTTTCCA 57.183 32.000 0.00 0.00 45.18 3.53
2199 5216 6.803154 AAGTGCTCAACTATACTTTTCCAC 57.197 37.500 0.00 0.00 38.56 4.02
2200 5217 5.865085 AGTGCTCAACTATACTTTTCCACA 58.135 37.500 0.00 0.00 37.36 4.17
2201 5218 6.296026 AGTGCTCAACTATACTTTTCCACAA 58.704 36.000 0.00 0.00 37.36 3.33
2202 5219 6.204882 AGTGCTCAACTATACTTTTCCACAAC 59.795 38.462 0.00 0.00 37.36 3.32
2203 5220 6.204882 GTGCTCAACTATACTTTTCCACAACT 59.795 38.462 0.00 0.00 0.00 3.16
2204 5221 6.770785 TGCTCAACTATACTTTTCCACAACTT 59.229 34.615 0.00 0.00 0.00 2.66
2264 5286 8.553459 AACACCAATATGTTTTGTTTGTTTGA 57.447 26.923 0.00 0.00 39.86 2.69
2285 5307 7.658525 TTGAAAATATACACCATGGCATCTT 57.341 32.000 13.04 0.00 0.00 2.40
2304 5326 9.736023 GGCATCTTTATTTAGGAAAACATACAG 57.264 33.333 0.00 0.00 0.00 2.74
2317 5339 9.574516 AGGAAAACATACAGAGTAAAATGTCTT 57.425 29.630 0.00 0.00 31.53 3.01
2345 5367 6.952773 TGTTTTCCTAAATATAGCCGCAAT 57.047 33.333 0.00 0.00 0.00 3.56
2373 5395 8.458573 AAAACAACTCATACTATTGTTCCACA 57.541 30.769 2.35 0.00 43.85 4.17
2401 5426 7.065803 ACAAAACGTCATCGAAATCCAGATATT 59.934 33.333 0.00 0.00 40.62 1.28
2632 5658 5.425196 AAGCACCTGATATTTTTGGCATT 57.575 34.783 0.00 0.00 0.00 3.56
2645 5671 0.914644 TGGCATTGGAAGAGAGAGGG 59.085 55.000 0.00 0.00 0.00 4.30
2694 5720 2.486504 CATTGCGCGGTTGCATCT 59.513 55.556 8.83 0.00 45.78 2.90
2715 5741 2.266055 CAAGAGAGGGCCGGACAC 59.734 66.667 11.00 1.64 0.00 3.67
2725 5751 2.760385 CCGGACACTCCTCCTCCC 60.760 72.222 0.00 0.00 33.30 4.30
2774 5800 4.164221 ACCAGAAGTGTGGAAGAAGAAAGA 59.836 41.667 0.74 0.00 40.44 2.52
2857 5883 5.496133 TCTTTCGGGTCGATTAAGTCTAG 57.504 43.478 0.00 0.00 35.23 2.43
2863 5889 6.870769 TCGGGTCGATTAAGTCTAGAAAAAT 58.129 36.000 0.00 0.00 0.00 1.82
2976 6003 4.142381 GCCTTTTATGGTGATTGGTGTCTC 60.142 45.833 0.00 0.00 0.00 3.36
2979 6006 4.545208 TTATGGTGATTGGTGTCTCGAA 57.455 40.909 0.00 0.00 0.00 3.71
3001 6028 0.249120 CCATCAGCCGAACTACACCA 59.751 55.000 0.00 0.00 0.00 4.17
3044 6071 2.153034 TGTCCATCTCCCGTGACATA 57.847 50.000 0.00 0.00 33.09 2.29
3053 6080 3.780624 CCGTGACATAAGGGAAGGG 57.219 57.895 0.00 0.00 0.00 3.95
3054 6081 0.463833 CCGTGACATAAGGGAAGGGC 60.464 60.000 0.00 0.00 0.00 5.19
3055 6082 0.810031 CGTGACATAAGGGAAGGGCG 60.810 60.000 0.00 0.00 0.00 6.13
3056 6083 0.539986 GTGACATAAGGGAAGGGCGA 59.460 55.000 0.00 0.00 0.00 5.54
3057 6084 0.830648 TGACATAAGGGAAGGGCGAG 59.169 55.000 0.00 0.00 0.00 5.03
3058 6085 0.831307 GACATAAGGGAAGGGCGAGT 59.169 55.000 0.00 0.00 0.00 4.18
3059 6086 0.541863 ACATAAGGGAAGGGCGAGTG 59.458 55.000 0.00 0.00 0.00 3.51
3060 6087 0.815615 CATAAGGGAAGGGCGAGTGC 60.816 60.000 0.00 0.00 41.71 4.40
3061 6088 0.983378 ATAAGGGAAGGGCGAGTGCT 60.983 55.000 0.00 0.00 42.25 4.40
3062 6089 0.324923 TAAGGGAAGGGCGAGTGCTA 60.325 55.000 0.00 0.00 42.25 3.49
3063 6090 1.198759 AAGGGAAGGGCGAGTGCTAA 61.199 55.000 0.00 0.00 42.25 3.09
3064 6091 0.983378 AGGGAAGGGCGAGTGCTAAT 60.983 55.000 0.00 0.00 42.25 1.73
3065 6092 0.107165 GGGAAGGGCGAGTGCTAATT 60.107 55.000 0.00 0.00 42.25 1.40
3066 6093 1.140252 GGGAAGGGCGAGTGCTAATTA 59.860 52.381 0.00 0.00 42.25 1.40
3067 6094 2.420967 GGGAAGGGCGAGTGCTAATTAA 60.421 50.000 0.00 0.00 42.25 1.40
3068 6095 2.872858 GGAAGGGCGAGTGCTAATTAAG 59.127 50.000 0.00 0.00 42.25 1.85
3069 6096 3.532542 GAAGGGCGAGTGCTAATTAAGT 58.467 45.455 0.00 0.00 42.25 2.24
3070 6097 4.442472 GGAAGGGCGAGTGCTAATTAAGTA 60.442 45.833 0.00 0.00 42.25 2.24
3071 6098 4.957684 AGGGCGAGTGCTAATTAAGTAT 57.042 40.909 0.00 0.00 42.25 2.12
3072 6099 6.415206 AAGGGCGAGTGCTAATTAAGTATA 57.585 37.500 0.00 0.00 42.25 1.47
3073 6100 6.607004 AGGGCGAGTGCTAATTAAGTATAT 57.393 37.500 0.00 0.00 42.25 0.86
3074 6101 6.631962 AGGGCGAGTGCTAATTAAGTATATC 58.368 40.000 0.00 0.00 42.25 1.63
3075 6102 5.811100 GGGCGAGTGCTAATTAAGTATATCC 59.189 44.000 0.00 0.00 42.25 2.59
3076 6103 6.395629 GGCGAGTGCTAATTAAGTATATCCA 58.604 40.000 0.00 0.00 42.25 3.41
3077 6104 7.042335 GGCGAGTGCTAATTAAGTATATCCAT 58.958 38.462 0.00 0.00 42.25 3.41
3078 6105 7.549488 GGCGAGTGCTAATTAAGTATATCCATT 59.451 37.037 0.00 0.00 42.25 3.16
3079 6106 8.383619 GCGAGTGCTAATTAAGTATATCCATTG 58.616 37.037 0.00 0.00 38.39 2.82
3080 6107 8.873830 CGAGTGCTAATTAAGTATATCCATTGG 58.126 37.037 0.00 0.00 0.00 3.16
3081 6108 9.726438 GAGTGCTAATTAAGTATATCCATTGGT 57.274 33.333 1.86 0.00 0.00 3.67
3088 6115 9.569122 AATTAAGTATATCCATTGGTTACGCTT 57.431 29.630 1.86 9.02 0.00 4.68
3089 6116 6.861065 AAGTATATCCATTGGTTACGCTTG 57.139 37.500 1.86 0.00 0.00 4.01
3090 6117 5.305585 AGTATATCCATTGGTTACGCTTGG 58.694 41.667 1.86 0.00 0.00 3.61
3091 6118 2.507407 ATCCATTGGTTACGCTTGGT 57.493 45.000 1.86 0.00 0.00 3.67
3092 6119 1.816074 TCCATTGGTTACGCTTGGTC 58.184 50.000 1.86 0.00 0.00 4.02
3093 6120 0.808755 CCATTGGTTACGCTTGGTCC 59.191 55.000 0.00 0.00 0.00 4.46
3094 6121 1.529226 CATTGGTTACGCTTGGTCCA 58.471 50.000 0.00 0.00 0.00 4.02
3095 6122 2.091541 CATTGGTTACGCTTGGTCCAT 58.908 47.619 0.00 0.00 0.00 3.41
3096 6123 2.279935 TTGGTTACGCTTGGTCCATT 57.720 45.000 0.00 0.00 0.00 3.16
3097 6124 3.420300 TTGGTTACGCTTGGTCCATTA 57.580 42.857 0.00 0.00 0.00 1.90
3098 6125 3.637911 TGGTTACGCTTGGTCCATTAT 57.362 42.857 0.00 0.00 0.00 1.28
3099 6126 3.537580 TGGTTACGCTTGGTCCATTATC 58.462 45.455 0.00 0.00 0.00 1.75
3100 6127 3.055021 TGGTTACGCTTGGTCCATTATCA 60.055 43.478 0.00 0.00 0.00 2.15
3101 6128 4.134563 GGTTACGCTTGGTCCATTATCAT 58.865 43.478 0.00 0.00 0.00 2.45
3102 6129 4.024048 GGTTACGCTTGGTCCATTATCATG 60.024 45.833 0.00 0.00 0.00 3.07
3103 6130 3.558931 ACGCTTGGTCCATTATCATGA 57.441 42.857 0.00 0.00 31.07 3.07
3104 6131 4.090761 ACGCTTGGTCCATTATCATGAT 57.909 40.909 13.81 13.81 31.07 2.45
3105 6132 3.817084 ACGCTTGGTCCATTATCATGATG 59.183 43.478 18.72 2.98 31.07 3.07
3106 6133 4.067192 CGCTTGGTCCATTATCATGATGA 58.933 43.478 18.72 10.78 31.07 2.92
3107 6134 4.083643 CGCTTGGTCCATTATCATGATGAC 60.084 45.833 18.72 15.44 31.07 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 149 2.477880 CAAAGGGTGCACGTATCCC 58.522 57.895 11.45 5.93 41.36 3.85
159 160 2.750350 CTCCTGGTCGCAAAGGGT 59.250 61.111 0.00 0.00 34.08 4.34
219 223 4.101942 CACAAGTAAGCACGCTTCAAAAA 58.898 39.130 7.71 0.00 37.47 1.94
220 224 3.127895 ACACAAGTAAGCACGCTTCAAAA 59.872 39.130 7.71 0.00 37.47 2.44
222 226 2.285083 ACACAAGTAAGCACGCTTCAA 58.715 42.857 7.71 0.00 37.47 2.69
223 227 1.948104 ACACAAGTAAGCACGCTTCA 58.052 45.000 7.71 0.00 37.47 3.02
224 228 3.334272 AAACACAAGTAAGCACGCTTC 57.666 42.857 7.71 0.66 37.47 3.86
225 229 3.775661 AAAACACAAGTAAGCACGCTT 57.224 38.095 9.57 9.57 39.83 4.68
226 230 3.434637 CAAAAACACAAGTAAGCACGCT 58.565 40.909 0.00 0.00 0.00 5.07
227 231 2.034926 GCAAAAACACAAGTAAGCACGC 60.035 45.455 0.00 0.00 0.00 5.34
228 232 2.533942 GGCAAAAACACAAGTAAGCACG 59.466 45.455 0.00 0.00 0.00 5.34
229 233 3.516615 TGGCAAAAACACAAGTAAGCAC 58.483 40.909 0.00 0.00 0.00 4.40
230 234 3.430098 CCTGGCAAAAACACAAGTAAGCA 60.430 43.478 0.00 0.00 0.00 3.91
231 235 3.123050 CCTGGCAAAAACACAAGTAAGC 58.877 45.455 0.00 0.00 0.00 3.09
232 236 3.132111 ACCCTGGCAAAAACACAAGTAAG 59.868 43.478 0.00 0.00 0.00 2.34
234 238 2.428890 CACCCTGGCAAAAACACAAGTA 59.571 45.455 0.00 0.00 0.00 2.24
236 240 1.480137 TCACCCTGGCAAAAACACAAG 59.520 47.619 0.00 0.00 0.00 3.16
301 305 2.263077 GAGAGAATCATGTTGCGACGT 58.737 47.619 0.00 0.00 37.82 4.34
344 348 2.271944 ACTGGCTTTGTAAGGTCCAC 57.728 50.000 0.00 0.00 0.00 4.02
352 356 6.325919 CAAATCCTTTGTACTGGCTTTGTA 57.674 37.500 14.97 0.00 35.77 2.41
372 376 1.075374 AGCCCAAGGATAGTGCACAAA 59.925 47.619 21.04 7.03 0.00 2.83
406 410 5.664294 ATTGCATTTCTGTGCTTCCATAA 57.336 34.783 0.00 0.00 45.27 1.90
420 424 4.549458 CTCCGTCAAAGACAATTGCATTT 58.451 39.130 5.05 4.01 32.09 2.32
449 453 1.069906 CAAGTAGCGCCTCACACAAAC 60.070 52.381 2.29 0.00 0.00 2.93
452 456 1.005037 CCAAGTAGCGCCTCACACA 60.005 57.895 2.29 0.00 0.00 3.72
483 495 3.057104 CCGACAACCAAATTAAACCCTCC 60.057 47.826 0.00 0.00 0.00 4.30
493 505 3.370231 GCCGGCCGACAACCAAAT 61.370 61.111 30.73 0.00 0.00 2.32
554 566 3.536917 CCTCGCGCCTATCCCACA 61.537 66.667 0.00 0.00 0.00 4.17
567 579 5.869888 AGCTTACATAAAACTTCACTCCTCG 59.130 40.000 0.00 0.00 0.00 4.63
723 738 7.894376 TGTGGTTACGTCTTAATTTCCTAAG 57.106 36.000 0.00 0.00 0.00 2.18
756 804 1.279527 CGCACATGCACAGCTTTTGG 61.280 55.000 4.49 0.00 42.21 3.28
769 817 1.010125 GAAACACGCACACGCACAT 60.010 52.632 0.00 0.00 45.53 3.21
810 858 5.965334 CACACGCACAACATTTTATCTATCC 59.035 40.000 0.00 0.00 0.00 2.59
822 870 2.188849 AAACACGCACACGCACAACA 62.189 50.000 0.00 0.00 45.53 3.33
1007 3678 2.224113 ACCAAACTAACGACACGGTGAT 60.224 45.455 16.29 0.00 0.00 3.06
1185 3862 4.222847 GCCCGGACGTGGATCCTC 62.223 72.222 14.23 8.71 36.52 3.71
1229 3906 7.410835 CGTTGAGTGCAATATGGAATCGTATAG 60.411 40.741 0.00 0.00 35.56 1.31
1230 3907 6.364976 CGTTGAGTGCAATATGGAATCGTATA 59.635 38.462 0.00 0.00 35.56 1.47
1234 3911 3.555547 TCGTTGAGTGCAATATGGAATCG 59.444 43.478 0.00 0.00 35.56 3.34
1236 3913 6.455360 AAATCGTTGAGTGCAATATGGAAT 57.545 33.333 0.00 0.00 36.22 3.01
1237 3914 5.895636 AAATCGTTGAGTGCAATATGGAA 57.104 34.783 0.00 0.00 36.22 3.53
1295 3980 2.743718 CTTCTCCCTGCACCACGT 59.256 61.111 0.00 0.00 0.00 4.49
1296 3981 2.046892 CCTTCTCCCTGCACCACG 60.047 66.667 0.00 0.00 0.00 4.94
1297 3982 1.302832 CACCTTCTCCCTGCACCAC 60.303 63.158 0.00 0.00 0.00 4.16
1298 3983 2.528818 CCACCTTCTCCCTGCACCA 61.529 63.158 0.00 0.00 0.00 4.17
1299 3984 2.352805 CCACCTTCTCCCTGCACC 59.647 66.667 0.00 0.00 0.00 5.01
1316 4001 1.147153 CTTTCTCCTCCGGGATGGC 59.853 63.158 0.00 0.00 41.36 4.40
1439 4137 2.169789 CGGTGAAGATGGCGCTCTG 61.170 63.158 7.64 0.00 0.00 3.35
1449 4147 3.744719 CGGCGAGGACGGTGAAGA 61.745 66.667 0.00 0.00 40.15 2.87
1561 4259 0.870307 CATAGAAGGCGTTCCGGTCG 60.870 60.000 15.23 15.04 37.47 4.79
1624 4322 2.125106 CTGAAGTAGTGGCGGCCC 60.125 66.667 17.97 8.02 0.00 5.80
1650 4348 0.394565 GTCAATCCCTCCCTCGATGG 59.605 60.000 0.00 0.00 0.00 3.51
1660 4358 2.420687 GCCGAAGATGAAGTCAATCCCT 60.421 50.000 0.00 0.00 0.00 4.20
1666 4364 1.134367 CCGTAGCCGAAGATGAAGTCA 59.866 52.381 0.00 0.00 35.63 3.41
1717 4415 2.819984 AAGACGGCGGCATGTTGGAT 62.820 55.000 18.30 0.00 0.00 3.41
1735 4433 2.737881 CCCGGGATTCTGGCCGTAA 61.738 63.158 18.48 0.00 38.11 3.18
1775 4476 3.771160 GGGGTCACTGGCGTCGAT 61.771 66.667 0.00 0.00 0.00 3.59
1888 4593 4.344968 ACGATGATCCTGGACATATTCACA 59.655 41.667 0.00 0.00 0.00 3.58
1939 4644 3.963428 ACTTTGTTAGTCTCGCCATCT 57.037 42.857 0.00 0.00 28.23 2.90
1957 4662 1.135083 CCAACCTCTGCGAATACGACT 60.135 52.381 0.00 0.00 42.66 4.18
1990 4695 1.137086 CTTCCGGTCATGTTCGATCCT 59.863 52.381 0.00 0.00 0.00 3.24
2120 5137 1.266989 GAGTTGTGGAAAAGAAGGCCG 59.733 52.381 0.00 0.00 0.00 6.13
2133 5150 9.764870 CAAATCTAAATACATGAGTGAGTTGTG 57.235 33.333 0.00 0.00 0.00 3.33
2153 5170 9.131791 ACTTTTACAGATTGGTGTTACAAATCT 57.868 29.630 6.49 6.49 33.48 2.40
2154 5171 9.180678 CACTTTTACAGATTGGTGTTACAAATC 57.819 33.333 2.50 2.50 33.48 2.17
2155 5172 7.651704 GCACTTTTACAGATTGGTGTTACAAAT 59.348 33.333 0.00 0.00 33.48 2.32
2156 5173 6.975772 GCACTTTTACAGATTGGTGTTACAAA 59.024 34.615 0.00 0.00 33.48 2.83
2157 5174 6.320164 AGCACTTTTACAGATTGGTGTTACAA 59.680 34.615 0.00 0.00 34.41 2.41
2158 5175 5.825679 AGCACTTTTACAGATTGGTGTTACA 59.174 36.000 0.00 0.00 31.46 2.41
2159 5176 6.017440 TGAGCACTTTTACAGATTGGTGTTAC 60.017 38.462 0.00 0.00 31.46 2.50
2160 5177 6.058833 TGAGCACTTTTACAGATTGGTGTTA 58.941 36.000 0.00 0.00 31.46 2.41
2161 5178 4.887071 TGAGCACTTTTACAGATTGGTGTT 59.113 37.500 0.00 0.00 31.46 3.32
2162 5179 4.460263 TGAGCACTTTTACAGATTGGTGT 58.540 39.130 0.00 0.00 34.21 4.16
2163 5180 5.009010 AGTTGAGCACTTTTACAGATTGGTG 59.991 40.000 0.00 0.00 27.32 4.17
2164 5181 5.133221 AGTTGAGCACTTTTACAGATTGGT 58.867 37.500 0.00 0.00 27.32 3.67
2165 5182 5.695851 AGTTGAGCACTTTTACAGATTGG 57.304 39.130 0.00 0.00 27.32 3.16
2166 5183 9.155975 AGTATAGTTGAGCACTTTTACAGATTG 57.844 33.333 0.00 0.00 36.88 2.67
2167 5184 9.726438 AAGTATAGTTGAGCACTTTTACAGATT 57.274 29.630 0.00 0.00 36.88 2.40
2168 5185 9.726438 AAAGTATAGTTGAGCACTTTTACAGAT 57.274 29.630 0.00 0.00 37.84 2.90
2169 5186 9.555727 AAAAGTATAGTTGAGCACTTTTACAGA 57.444 29.630 8.99 0.00 44.92 3.41
2170 5187 9.813080 GAAAAGTATAGTTGAGCACTTTTACAG 57.187 33.333 10.34 0.00 46.05 2.74
2171 5188 8.780249 GGAAAAGTATAGTTGAGCACTTTTACA 58.220 33.333 13.50 0.00 46.05 2.41
2172 5189 8.780249 TGGAAAAGTATAGTTGAGCACTTTTAC 58.220 33.333 12.09 12.09 46.05 2.01
2173 5190 8.780249 GTGGAAAAGTATAGTTGAGCACTTTTA 58.220 33.333 10.34 0.00 46.05 1.52
2175 5192 6.770785 TGTGGAAAAGTATAGTTGAGCACTTT 59.229 34.615 0.00 0.00 41.67 2.66
2176 5193 6.296026 TGTGGAAAAGTATAGTTGAGCACTT 58.704 36.000 0.00 0.00 36.88 3.16
2177 5194 5.865085 TGTGGAAAAGTATAGTTGAGCACT 58.135 37.500 0.00 0.00 39.87 4.40
2178 5195 6.204882 AGTTGTGGAAAAGTATAGTTGAGCAC 59.795 38.462 0.00 0.00 0.00 4.40
2179 5196 6.296026 AGTTGTGGAAAAGTATAGTTGAGCA 58.704 36.000 0.00 0.00 0.00 4.26
2180 5197 6.803154 AGTTGTGGAAAAGTATAGTTGAGC 57.197 37.500 0.00 0.00 0.00 4.26
2181 5198 8.070171 CACAAGTTGTGGAAAAGTATAGTTGAG 58.930 37.037 25.45 0.00 44.27 3.02
2182 5199 7.925993 CACAAGTTGTGGAAAAGTATAGTTGA 58.074 34.615 25.45 0.00 44.27 3.18
2198 5215 2.166254 CACTTTTCCAGCCACAAGTTGT 59.834 45.455 1.64 1.64 0.00 3.32
2199 5216 2.813061 CACTTTTCCAGCCACAAGTTG 58.187 47.619 0.00 0.00 0.00 3.16
2200 5217 1.136891 GCACTTTTCCAGCCACAAGTT 59.863 47.619 0.00 0.00 0.00 2.66
2201 5218 0.746659 GCACTTTTCCAGCCACAAGT 59.253 50.000 0.00 0.00 0.00 3.16
2202 5219 1.000938 GAGCACTTTTCCAGCCACAAG 60.001 52.381 0.00 0.00 0.00 3.16
2203 5220 1.032014 GAGCACTTTTCCAGCCACAA 58.968 50.000 0.00 0.00 0.00 3.33
2204 5221 0.106769 TGAGCACTTTTCCAGCCACA 60.107 50.000 0.00 0.00 0.00 4.17
2278 5300 9.736023 CTGTATGTTTTCCTAAATAAAGATGCC 57.264 33.333 0.00 0.00 0.00 4.40
2315 5337 9.878599 CGGCTATATTTAGGAAAACATACAAAG 57.121 33.333 0.00 0.00 0.00 2.77
2316 5338 8.347035 GCGGCTATATTTAGGAAAACATACAAA 58.653 33.333 0.00 0.00 0.00 2.83
2317 5339 7.499563 TGCGGCTATATTTAGGAAAACATACAA 59.500 33.333 0.00 0.00 0.00 2.41
2318 5340 6.993308 TGCGGCTATATTTAGGAAAACATACA 59.007 34.615 0.00 0.00 0.00 2.29
2319 5341 7.429636 TGCGGCTATATTTAGGAAAACATAC 57.570 36.000 0.00 0.00 0.00 2.39
2320 5342 8.630054 ATTGCGGCTATATTTAGGAAAACATA 57.370 30.769 0.00 0.00 0.00 2.29
2321 5343 6.952773 TTGCGGCTATATTTAGGAAAACAT 57.047 33.333 0.00 0.00 0.00 2.71
2322 5344 6.544197 TGATTGCGGCTATATTTAGGAAAACA 59.456 34.615 0.00 0.00 0.00 2.83
2323 5345 6.966021 TGATTGCGGCTATATTTAGGAAAAC 58.034 36.000 0.00 0.00 0.00 2.43
2324 5346 7.575414 TTGATTGCGGCTATATTTAGGAAAA 57.425 32.000 0.00 0.00 0.00 2.29
2325 5347 7.575414 TTTGATTGCGGCTATATTTAGGAAA 57.425 32.000 0.00 0.00 0.00 3.13
2326 5348 7.575414 TTTTGATTGCGGCTATATTTAGGAA 57.425 32.000 0.00 0.00 0.00 3.36
2327 5349 7.067615 TGTTTTTGATTGCGGCTATATTTAGGA 59.932 33.333 0.00 0.00 0.00 2.94
2328 5350 7.199766 TGTTTTTGATTGCGGCTATATTTAGG 58.800 34.615 0.00 0.00 0.00 2.69
2329 5351 8.531530 GTTGTTTTTGATTGCGGCTATATTTAG 58.468 33.333 0.00 0.00 0.00 1.85
2330 5352 8.247562 AGTTGTTTTTGATTGCGGCTATATTTA 58.752 29.630 0.00 0.00 0.00 1.40
2331 5353 7.096551 AGTTGTTTTTGATTGCGGCTATATTT 58.903 30.769 0.00 0.00 0.00 1.40
2332 5354 6.630071 AGTTGTTTTTGATTGCGGCTATATT 58.370 32.000 0.00 0.00 0.00 1.28
2339 5361 5.460646 AGTATGAGTTGTTTTTGATTGCGG 58.539 37.500 0.00 0.00 0.00 5.69
2345 5367 9.126151 TGGAACAATAGTATGAGTTGTTTTTGA 57.874 29.630 6.09 0.00 43.74 2.69
2373 5395 5.008217 TCTGGATTTCGATGACGTTTTGTTT 59.992 36.000 0.00 0.00 40.69 2.83
2415 5440 6.978080 GTGTGTCAGAAATGCTAAAGGAAAAA 59.022 34.615 0.00 0.00 0.00 1.94
2420 5445 6.992063 ATAGTGTGTCAGAAATGCTAAAGG 57.008 37.500 0.00 0.00 0.00 3.11
2423 5448 7.919690 GCATTATAGTGTGTCAGAAATGCTAA 58.080 34.615 8.94 0.00 42.61 3.09
2486 5511 6.158871 ACCCCCTGAAAAGTTTAATTCCAAAA 59.841 34.615 0.00 0.00 0.00 2.44
2496 5521 3.841255 TGACAAAACCCCCTGAAAAGTTT 59.159 39.130 0.00 0.00 34.02 2.66
2498 5523 2.764010 GTGACAAAACCCCCTGAAAAGT 59.236 45.455 0.00 0.00 0.00 2.66
2499 5524 2.763448 TGTGACAAAACCCCCTGAAAAG 59.237 45.455 0.00 0.00 0.00 2.27
2503 5528 1.216678 ACATGTGACAAAACCCCCTGA 59.783 47.619 0.00 0.00 0.00 3.86
2504 5529 1.613437 GACATGTGACAAAACCCCCTG 59.387 52.381 1.15 0.00 0.00 4.45
2505 5530 1.499007 AGACATGTGACAAAACCCCCT 59.501 47.619 1.15 0.00 0.00 4.79
2506 5531 1.995376 AGACATGTGACAAAACCCCC 58.005 50.000 1.15 0.00 0.00 5.40
2632 5658 2.023984 TCATACTGCCCTCTCTCTTCCA 60.024 50.000 0.00 0.00 0.00 3.53
2645 5671 7.384115 TGAGTGTAAACTTGTAACTCATACTGC 59.616 37.037 0.00 0.00 41.63 4.40
2715 5741 3.083997 CGGGTTGGGGAGGAGGAG 61.084 72.222 0.00 0.00 0.00 3.69
2725 5751 3.992260 TTAAACACATGAACGGGTTGG 57.008 42.857 0.00 0.00 0.00 3.77
2944 5971 2.159382 ACCATAAAAGGCTTGGTGACG 58.841 47.619 7.78 0.00 42.09 4.35
2976 6003 0.670546 AGTTCGGCTGATGGTGTTCG 60.671 55.000 0.00 0.00 0.00 3.95
2979 6006 0.973632 TGTAGTTCGGCTGATGGTGT 59.026 50.000 0.00 0.00 0.00 4.16
3001 6028 2.484417 GGAGTTGAGACATGCCGATGAT 60.484 50.000 0.00 0.00 33.36 2.45
3044 6071 1.198759 TTAGCACTCGCCCTTCCCTT 61.199 55.000 0.00 0.00 39.83 3.95
3048 6075 3.532542 ACTTAATTAGCACTCGCCCTTC 58.467 45.455 0.00 0.00 39.83 3.46
3049 6076 3.629142 ACTTAATTAGCACTCGCCCTT 57.371 42.857 0.00 0.00 39.83 3.95
3050 6077 4.957684 ATACTTAATTAGCACTCGCCCT 57.042 40.909 0.00 0.00 39.83 5.19
3051 6078 5.811100 GGATATACTTAATTAGCACTCGCCC 59.189 44.000 0.00 0.00 39.83 6.13
3052 6079 6.395629 TGGATATACTTAATTAGCACTCGCC 58.604 40.000 0.00 0.00 39.83 5.54
3053 6080 8.383619 CAATGGATATACTTAATTAGCACTCGC 58.616 37.037 0.00 0.00 38.99 5.03
3054 6081 8.873830 CCAATGGATATACTTAATTAGCACTCG 58.126 37.037 0.00 0.00 0.00 4.18
3055 6082 9.726438 ACCAATGGATATACTTAATTAGCACTC 57.274 33.333 6.16 0.00 0.00 3.51
3062 6089 9.569122 AAGCGTAACCAATGGATATACTTAATT 57.431 29.630 6.16 0.00 0.00 1.40
3063 6090 8.999431 CAAGCGTAACCAATGGATATACTTAAT 58.001 33.333 6.16 0.00 0.00 1.40
3064 6091 7.442969 CCAAGCGTAACCAATGGATATACTTAA 59.557 37.037 6.16 0.00 32.82 1.85
3065 6092 6.932400 CCAAGCGTAACCAATGGATATACTTA 59.068 38.462 6.16 0.00 32.82 2.24
3066 6093 5.763204 CCAAGCGTAACCAATGGATATACTT 59.237 40.000 6.16 3.86 32.82 2.24
3067 6094 5.163237 ACCAAGCGTAACCAATGGATATACT 60.163 40.000 6.16 0.00 35.16 2.12
3068 6095 5.061179 ACCAAGCGTAACCAATGGATATAC 58.939 41.667 6.16 5.49 35.16 1.47
3069 6096 5.298989 ACCAAGCGTAACCAATGGATATA 57.701 39.130 6.16 0.00 35.16 0.86
3070 6097 4.134563 GACCAAGCGTAACCAATGGATAT 58.865 43.478 6.16 0.00 35.16 1.63
3071 6098 3.537580 GACCAAGCGTAACCAATGGATA 58.462 45.455 6.16 0.00 35.16 2.59
3072 6099 2.365582 GACCAAGCGTAACCAATGGAT 58.634 47.619 6.16 0.00 35.16 3.41
3073 6100 1.612199 GGACCAAGCGTAACCAATGGA 60.612 52.381 6.16 0.00 35.16 3.41
3074 6101 0.808755 GGACCAAGCGTAACCAATGG 59.191 55.000 0.00 0.00 37.19 3.16
3075 6102 1.529226 TGGACCAAGCGTAACCAATG 58.471 50.000 0.00 0.00 0.00 2.82
3076 6103 2.507407 ATGGACCAAGCGTAACCAAT 57.493 45.000 0.00 0.00 34.28 3.16
3077 6104 2.279935 AATGGACCAAGCGTAACCAA 57.720 45.000 0.00 0.00 34.28 3.67
3078 6105 3.055021 TGATAATGGACCAAGCGTAACCA 60.055 43.478 0.00 0.00 35.09 3.67
3079 6106 3.537580 TGATAATGGACCAAGCGTAACC 58.462 45.455 0.00 0.00 0.00 2.85
3080 6107 4.814234 TCATGATAATGGACCAAGCGTAAC 59.186 41.667 0.00 0.00 0.00 2.50
3081 6108 5.029807 TCATGATAATGGACCAAGCGTAA 57.970 39.130 0.00 0.00 0.00 3.18
3082 6109 4.681074 TCATGATAATGGACCAAGCGTA 57.319 40.909 0.00 0.00 0.00 4.42
3083 6110 3.558931 TCATGATAATGGACCAAGCGT 57.441 42.857 0.00 0.00 0.00 5.07
3084 6111 4.067192 TCATCATGATAATGGACCAAGCG 58.933 43.478 8.15 0.00 0.00 4.68
3085 6112 5.368256 GTCATCATGATAATGGACCAAGC 57.632 43.478 8.15 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.