Multiple sequence alignment - TraesCS2B01G139200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G139200 chr2B 100.000 4105 0 0 1 4105 106119317 106115213 0.000000e+00 7581.0
1 TraesCS2B01G139200 chr2B 97.661 513 8 3 249 760 106116332 106115823 0.000000e+00 878.0
2 TraesCS2B01G139200 chr2B 97.661 513 8 3 2986 3495 106119069 106118558 0.000000e+00 878.0
3 TraesCS2B01G139200 chr2B 84.946 93 10 3 3937 4028 76082745 76082834 1.570000e-14 91.6
4 TraesCS2B01G139200 chr7B 96.234 2443 83 5 250 2690 372580212 372577777 0.000000e+00 3993.0
5 TraesCS2B01G139200 chr7B 96.920 974 28 2 2519 3491 372577903 372576931 0.000000e+00 1631.0
6 TraesCS2B01G139200 chr7B 97.843 510 7 3 249 757 372577437 372576931 0.000000e+00 878.0
7 TraesCS2B01G139200 chr7B 97.059 510 11 3 2987 3495 372580212 372579706 0.000000e+00 856.0
8 TraesCS2B01G139200 chr3B 95.713 2216 58 14 250 2436 763557841 763560048 0.000000e+00 3531.0
9 TraesCS2B01G139200 chr3B 95.828 2181 69 5 698 2859 449152913 449155090 0.000000e+00 3504.0
10 TraesCS2B01G139200 chr3B 96.452 1860 62 4 250 2107 793124952 793126809 0.000000e+00 3066.0
11 TraesCS2B01G139200 chr3B 95.283 1696 76 2 741 2435 281517161 281518853 0.000000e+00 2686.0
12 TraesCS2B01G139200 chr3B 95.106 1696 78 3 741 2435 281415431 281417122 0.000000e+00 2667.0
13 TraesCS2B01G139200 chr3B 96.721 976 26 4 2519 3488 793127320 793128295 0.000000e+00 1620.0
14 TraesCS2B01G139200 chr3B 96.111 977 32 3 2519 3491 763560311 763561285 0.000000e+00 1589.0
15 TraesCS2B01G139200 chr3B 97.642 509 9 2 249 754 793127787 793128295 0.000000e+00 870.0
16 TraesCS2B01G139200 chr3B 96.471 510 14 3 2987 3495 763557841 763558347 0.000000e+00 839.0
17 TraesCS2B01G139200 chr1B 94.223 2233 79 7 248 2436 563542056 563539830 0.000000e+00 3363.0
18 TraesCS2B01G139200 chr1B 97.116 971 25 2 2522 3491 563539564 563538596 0.000000e+00 1635.0
19 TraesCS2B01G139200 chr1B 97.266 512 8 3 249 759 563539100 563538594 0.000000e+00 863.0
20 TraesCS2B01G139200 chr1B 97.065 511 13 2 2986 3495 563542055 563541546 0.000000e+00 859.0
21 TraesCS2B01G139200 chr1B 81.457 151 20 4 7 157 442110029 442109887 2.590000e-22 117.0
22 TraesCS2B01G139200 chr4B 92.830 1841 111 6 868 2690 75564774 75566611 0.000000e+00 2649.0
23 TraesCS2B01G139200 chr6B 91.844 1925 89 12 250 2130 133450734 133448834 0.000000e+00 2623.0
24 TraesCS2B01G139200 chr6B 96.201 974 31 3 2519 3491 133448346 133447378 0.000000e+00 1589.0
25 TraesCS2B01G139200 chr5A 96.095 1434 55 1 698 2130 461880370 461878937 0.000000e+00 2337.0
26 TraesCS2B01G139200 chr5A 95.780 1019 35 2 2044 3054 461878969 461877951 0.000000e+00 1637.0
27 TraesCS2B01G139200 chr3A 95.886 1434 58 1 698 2130 36385317 36383884 0.000000e+00 2320.0
28 TraesCS2B01G139200 chr3A 95.721 1262 52 2 871 2130 36387900 36386639 0.000000e+00 2030.0
29 TraesCS2B01G139200 chr3A 95.388 1019 39 2 2044 3054 36383916 36382898 0.000000e+00 1615.0
30 TraesCS2B01G139200 chr3A 95.740 986 36 1 2044 3023 36386671 36385686 0.000000e+00 1583.0
31 TraesCS2B01G139200 chr7A 93.228 1462 70 12 698 2130 18774453 18772992 0.000000e+00 2124.0
32 TraesCS2B01G139200 chr7A 95.093 1019 42 2 2044 3054 18773024 18772006 0.000000e+00 1598.0
33 TraesCS2B01G139200 chr2D 92.814 334 22 1 3701 4034 70460145 70460476 2.220000e-132 483.0
34 TraesCS2B01G139200 chr2D 90.517 232 15 3 1 225 70459701 70459932 2.400000e-77 300.0
35 TraesCS2B01G139200 chr2D 93.789 161 6 3 3492 3651 70460011 70460168 5.300000e-59 239.0
36 TraesCS2B01G139200 chr2D 88.125 160 8 3 3492 3641 70458932 70459090 3.260000e-41 180.0
37 TraesCS2B01G139200 chr2D 85.161 155 12 3 3507 3651 69920801 69920648 9.190000e-32 148.0
38 TraesCS2B01G139200 chr2D 90.385 104 7 3 3825 3928 69920533 69920433 2.570000e-27 134.0
39 TraesCS2B01G139200 chr2D 84.559 136 13 3 3701 3828 70459075 70459210 1.200000e-25 128.0
40 TraesCS2B01G139200 chr1D 88.750 160 7 3 3492 3641 391357301 391357143 7.010000e-43 185.0
41 TraesCS2B01G139200 chr1D 85.294 136 12 4 3701 3828 391357158 391357023 2.570000e-27 134.0
42 TraesCS2B01G139200 chr1D 83.333 126 13 4 7 132 327993590 327993473 4.340000e-20 110.0
43 TraesCS2B01G139200 chr5B 85.027 187 16 4 2 187 638486315 638486140 3.260000e-41 180.0
44 TraesCS2B01G139200 chr5D 82.609 184 20 6 2 184 508620789 508620961 7.110000e-33 152.0
45 TraesCS2B01G139200 chr5D 100.000 35 0 0 3793 3827 530616312 530616278 9.520000e-07 65.8
46 TraesCS2B01G139200 chr1A 82.014 139 17 4 7 145 407116338 407116208 1.210000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G139200 chr2B 106115213 106119317 4104 True 3112.333333 7581 98.440667 1 4105 3 chr2B.!!$R1 4104
1 TraesCS2B01G139200 chr7B 372576931 372580212 3281 True 1839.500000 3993 97.014000 249 3495 4 chr7B.!!$R1 3246
2 TraesCS2B01G139200 chr3B 449152913 449155090 2177 False 3504.000000 3504 95.828000 698 2859 1 chr3B.!!$F3 2161
3 TraesCS2B01G139200 chr3B 281517161 281518853 1692 False 2686.000000 2686 95.283000 741 2435 1 chr3B.!!$F2 1694
4 TraesCS2B01G139200 chr3B 281415431 281417122 1691 False 2667.000000 2667 95.106000 741 2435 1 chr3B.!!$F1 1694
5 TraesCS2B01G139200 chr3B 763557841 763561285 3444 False 1986.333333 3531 96.098333 250 3495 3 chr3B.!!$F4 3245
6 TraesCS2B01G139200 chr3B 793124952 793128295 3343 False 1852.000000 3066 96.938333 249 3488 3 chr3B.!!$F5 3239
7 TraesCS2B01G139200 chr1B 563538594 563542056 3462 True 1680.000000 3363 96.417500 248 3495 4 chr1B.!!$R2 3247
8 TraesCS2B01G139200 chr4B 75564774 75566611 1837 False 2649.000000 2649 92.830000 868 2690 1 chr4B.!!$F1 1822
9 TraesCS2B01G139200 chr6B 133447378 133450734 3356 True 2106.000000 2623 94.022500 250 3491 2 chr6B.!!$R1 3241
10 TraesCS2B01G139200 chr5A 461877951 461880370 2419 True 1987.000000 2337 95.937500 698 3054 2 chr5A.!!$R1 2356
11 TraesCS2B01G139200 chr3A 36382898 36387900 5002 True 1887.000000 2320 95.683750 698 3054 4 chr3A.!!$R1 2356
12 TraesCS2B01G139200 chr7A 18772006 18774453 2447 True 1861.000000 2124 94.160500 698 3054 2 chr7A.!!$R1 2356
13 TraesCS2B01G139200 chr2D 70458932 70460476 1544 False 266.000000 483 89.960800 1 4034 5 chr2D.!!$F1 4033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.034380 TACGACTGGGAGAGTGGGAG 60.034 60.0 0.0 0.0 34.78 4.30 F
97 98 0.250770 GTCCCTCCTGGTTGTGGTTC 60.251 60.0 0.0 0.0 34.77 3.62 F
212 213 0.320946 GGCATTTTGGCTGCACACAT 60.321 50.0 0.5 0.0 41.47 3.21 F
1972 3986 0.896940 AACGTTCTCGGGAGGCTACA 60.897 55.0 0.0 0.0 41.85 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 3784 1.607801 CCTCCTGCATGGTCTCGACA 61.608 60.000 0.00 0.0 37.07 4.35 R
1972 3986 2.511637 GGGTCTTCATCTCCTCCCAATT 59.488 50.000 0.00 0.0 35.43 2.32 R
2204 4381 3.091190 TGGTTGTCGGGGTGTGGT 61.091 61.111 0.00 0.0 0.00 4.16 R
3658 6084 0.108019 CTAAAGACCGGGGGTATGCC 59.892 60.000 6.32 0.0 35.25 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.897271 TTGTGCCAGGTATGATTGGT 57.103 45.000 0.00 0.00 36.81 3.67
24 25 3.815401 GTGCCAGGTATGATTGGTACATC 59.185 47.826 6.83 0.00 45.76 3.06
26 27 3.664107 CCAGGTATGATTGGTACATCGG 58.336 50.000 0.00 0.00 39.30 4.18
27 28 3.067106 CAGGTATGATTGGTACATCGGC 58.933 50.000 0.00 0.00 39.30 5.54
29 30 3.327757 AGGTATGATTGGTACATCGGCAT 59.672 43.478 0.00 0.00 39.30 4.40
30 31 4.072131 GGTATGATTGGTACATCGGCATT 58.928 43.478 0.00 0.00 39.30 3.56
31 32 4.083324 GGTATGATTGGTACATCGGCATTG 60.083 45.833 0.00 0.00 39.30 2.82
32 33 3.274095 TGATTGGTACATCGGCATTGA 57.726 42.857 0.00 0.00 39.30 2.57
33 34 3.819368 TGATTGGTACATCGGCATTGAT 58.181 40.909 0.00 0.00 39.30 2.57
34 35 3.814842 TGATTGGTACATCGGCATTGATC 59.185 43.478 0.00 0.00 39.30 2.92
35 36 2.998316 TGGTACATCGGCATTGATCA 57.002 45.000 0.00 0.00 0.00 2.92
36 37 3.490439 TGGTACATCGGCATTGATCAT 57.510 42.857 0.00 0.00 0.00 2.45
37 38 4.615588 TGGTACATCGGCATTGATCATA 57.384 40.909 0.00 0.00 0.00 2.15
39 40 4.937015 TGGTACATCGGCATTGATCATATG 59.063 41.667 0.00 4.97 0.00 1.78
41 42 4.290711 ACATCGGCATTGATCATATGGA 57.709 40.909 15.25 8.52 0.00 3.41
42 43 4.654915 ACATCGGCATTGATCATATGGAA 58.345 39.130 15.25 0.00 0.00 3.53
43 44 4.698780 ACATCGGCATTGATCATATGGAAG 59.301 41.667 15.25 7.99 0.00 3.46
45 46 2.751259 CGGCATTGATCATATGGAAGGG 59.249 50.000 15.25 0.00 0.00 3.95
46 47 3.559811 CGGCATTGATCATATGGAAGGGA 60.560 47.826 15.25 0.00 0.00 4.20
47 48 4.607239 GGCATTGATCATATGGAAGGGAT 58.393 43.478 15.25 0.00 0.00 3.85
48 49 5.021458 GGCATTGATCATATGGAAGGGATT 58.979 41.667 15.25 0.00 0.00 3.01
49 50 6.189859 GGCATTGATCATATGGAAGGGATTA 58.810 40.000 15.25 0.00 0.00 1.75
50 51 6.664816 GGCATTGATCATATGGAAGGGATTAA 59.335 38.462 15.25 0.00 0.00 1.40
51 52 7.343833 GGCATTGATCATATGGAAGGGATTAAT 59.656 37.037 15.25 0.00 0.00 1.40
53 54 8.692710 CATTGATCATATGGAAGGGATTAATGG 58.307 37.037 2.13 0.00 38.78 3.16
54 55 7.347319 TGATCATATGGAAGGGATTAATGGT 57.653 36.000 2.13 0.00 0.00 3.55
55 56 7.768643 TGATCATATGGAAGGGATTAATGGTT 58.231 34.615 2.13 0.00 0.00 3.67
56 57 8.899765 TGATCATATGGAAGGGATTAATGGTTA 58.100 33.333 2.13 0.00 0.00 2.85
57 58 9.178758 GATCATATGGAAGGGATTAATGGTTAC 57.821 37.037 2.13 0.00 0.00 2.50
58 59 7.165485 TCATATGGAAGGGATTAATGGTTACG 58.835 38.462 2.13 0.00 0.00 3.18
59 60 5.640158 ATGGAAGGGATTAATGGTTACGA 57.360 39.130 0.00 0.00 0.00 3.43
60 61 4.773013 TGGAAGGGATTAATGGTTACGAC 58.227 43.478 0.00 0.00 0.00 4.34
61 62 4.472108 TGGAAGGGATTAATGGTTACGACT 59.528 41.667 0.00 0.00 0.00 4.18
62 63 4.814771 GGAAGGGATTAATGGTTACGACTG 59.185 45.833 0.00 0.00 0.00 3.51
63 64 4.417426 AGGGATTAATGGTTACGACTGG 57.583 45.455 0.00 0.00 0.00 4.00
64 65 3.135895 AGGGATTAATGGTTACGACTGGG 59.864 47.826 0.00 0.00 0.00 4.45
65 66 3.135167 GGGATTAATGGTTACGACTGGGA 59.865 47.826 0.00 0.00 0.00 4.37
66 67 4.377897 GGATTAATGGTTACGACTGGGAG 58.622 47.826 0.00 0.00 0.00 4.30
67 68 4.100498 GGATTAATGGTTACGACTGGGAGA 59.900 45.833 0.00 0.00 0.00 3.71
68 69 4.730949 TTAATGGTTACGACTGGGAGAG 57.269 45.455 0.00 0.00 0.00 3.20
69 70 2.233305 ATGGTTACGACTGGGAGAGT 57.767 50.000 0.00 0.00 37.76 3.24
71 72 0.531200 GGTTACGACTGGGAGAGTGG 59.469 60.000 0.00 0.00 33.83 4.00
72 73 0.531200 GTTACGACTGGGAGAGTGGG 59.469 60.000 0.00 0.00 34.78 4.61
73 74 0.406750 TTACGACTGGGAGAGTGGGA 59.593 55.000 0.00 0.00 34.78 4.37
74 75 0.034380 TACGACTGGGAGAGTGGGAG 60.034 60.000 0.00 0.00 34.78 4.30
75 76 2.716017 CGACTGGGAGAGTGGGAGC 61.716 68.421 0.00 0.00 33.83 4.70
76 77 2.681778 ACTGGGAGAGTGGGAGCG 60.682 66.667 0.00 0.00 31.75 5.03
77 78 2.363018 CTGGGAGAGTGGGAGCGA 60.363 66.667 0.00 0.00 0.00 4.93
78 79 2.363018 TGGGAGAGTGGGAGCGAG 60.363 66.667 0.00 0.00 0.00 5.03
79 80 2.363147 GGGAGAGTGGGAGCGAGT 60.363 66.667 0.00 0.00 0.00 4.18
81 82 2.419739 GGAGAGTGGGAGCGAGTCC 61.420 68.421 0.00 0.00 46.10 3.85
88 89 3.151022 GGAGCGAGTCCCTCCTGG 61.151 72.222 15.49 0.00 44.40 4.45
89 90 2.363147 GAGCGAGTCCCTCCTGGT 60.363 66.667 0.00 0.00 34.77 4.00
90 91 1.985116 GAGCGAGTCCCTCCTGGTT 60.985 63.158 0.00 0.00 34.77 3.67
91 92 2.232298 GAGCGAGTCCCTCCTGGTTG 62.232 65.000 0.00 0.00 34.77 3.77
92 93 2.584391 GCGAGTCCCTCCTGGTTGT 61.584 63.158 0.00 0.00 34.77 3.32
93 94 1.293498 CGAGTCCCTCCTGGTTGTG 59.707 63.158 0.00 0.00 34.77 3.33
94 95 1.679898 GAGTCCCTCCTGGTTGTGG 59.320 63.158 0.00 0.00 34.77 4.17
95 96 1.073706 AGTCCCTCCTGGTTGTGGT 60.074 57.895 0.00 0.00 34.77 4.16
96 97 0.697854 AGTCCCTCCTGGTTGTGGTT 60.698 55.000 0.00 0.00 34.77 3.67
97 98 0.250770 GTCCCTCCTGGTTGTGGTTC 60.251 60.000 0.00 0.00 34.77 3.62
98 99 0.401395 TCCCTCCTGGTTGTGGTTCT 60.401 55.000 0.00 0.00 34.77 3.01
99 100 0.478507 CCCTCCTGGTTGTGGTTCTT 59.521 55.000 0.00 0.00 0.00 2.52
100 101 1.133482 CCCTCCTGGTTGTGGTTCTTT 60.133 52.381 0.00 0.00 0.00 2.52
101 102 2.230660 CCTCCTGGTTGTGGTTCTTTC 58.769 52.381 0.00 0.00 0.00 2.62
102 103 2.158608 CCTCCTGGTTGTGGTTCTTTCT 60.159 50.000 0.00 0.00 0.00 2.52
104 105 1.956477 CCTGGTTGTGGTTCTTTCTGG 59.044 52.381 0.00 0.00 0.00 3.86
106 107 3.434453 CCTGGTTGTGGTTCTTTCTGGTA 60.434 47.826 0.00 0.00 0.00 3.25
108 109 2.552743 GGTTGTGGTTCTTTCTGGTAGC 59.447 50.000 0.00 0.00 0.00 3.58
110 111 3.788227 TGTGGTTCTTTCTGGTAGCAT 57.212 42.857 0.00 0.00 0.00 3.79
111 112 3.411446 TGTGGTTCTTTCTGGTAGCATG 58.589 45.455 0.00 0.00 0.00 4.06
112 113 2.749621 GTGGTTCTTTCTGGTAGCATGG 59.250 50.000 0.00 0.00 0.00 3.66
113 114 2.642311 TGGTTCTTTCTGGTAGCATGGA 59.358 45.455 0.00 0.00 0.00 3.41
114 115 3.274288 GGTTCTTTCTGGTAGCATGGAG 58.726 50.000 0.00 0.00 0.00 3.86
115 116 2.680339 GTTCTTTCTGGTAGCATGGAGC 59.320 50.000 0.00 0.00 46.19 4.70
129 130 3.181472 GCATGGAGCCTGGATTAAAAAGG 60.181 47.826 0.00 0.00 37.23 3.11
130 131 3.100207 TGGAGCCTGGATTAAAAAGGG 57.900 47.619 0.00 0.00 0.00 3.95
131 132 2.381961 TGGAGCCTGGATTAAAAAGGGT 59.618 45.455 0.00 6.00 44.31 4.34
133 134 3.825908 AGCCTGGATTAAAAAGGGTCA 57.174 42.857 0.00 0.00 37.21 4.02
135 136 3.076032 AGCCTGGATTAAAAAGGGTCAGT 59.924 43.478 0.00 0.00 37.21 3.41
136 137 3.832490 GCCTGGATTAAAAAGGGTCAGTT 59.168 43.478 0.00 0.00 0.00 3.16
137 138 5.014202 GCCTGGATTAAAAAGGGTCAGTTA 58.986 41.667 0.00 0.00 0.00 2.24
138 139 5.105877 GCCTGGATTAAAAAGGGTCAGTTAC 60.106 44.000 0.00 0.00 0.00 2.50
149 150 3.396260 GGTCAGTTACCTAGTTGCACA 57.604 47.619 0.00 0.00 45.75 4.57
150 151 3.735591 GGTCAGTTACCTAGTTGCACAA 58.264 45.455 0.00 0.00 45.75 3.33
151 152 4.324267 GGTCAGTTACCTAGTTGCACAAT 58.676 43.478 0.00 0.00 45.75 2.71
153 154 4.755123 GTCAGTTACCTAGTTGCACAATGT 59.245 41.667 0.00 0.00 0.00 2.71
154 155 4.754618 TCAGTTACCTAGTTGCACAATGTG 59.245 41.667 9.36 9.36 36.51 3.21
155 156 4.754618 CAGTTACCTAGTTGCACAATGTGA 59.245 41.667 18.66 0.00 35.23 3.58
156 157 4.997395 AGTTACCTAGTTGCACAATGTGAG 59.003 41.667 18.66 4.80 35.23 3.51
158 159 2.371841 ACCTAGTTGCACAATGTGAGGA 59.628 45.455 18.66 0.00 35.23 3.71
159 160 3.009473 ACCTAGTTGCACAATGTGAGGAT 59.991 43.478 18.66 2.32 35.23 3.24
160 161 3.376234 CCTAGTTGCACAATGTGAGGATG 59.624 47.826 18.66 2.02 35.23 3.51
161 162 3.144657 AGTTGCACAATGTGAGGATGA 57.855 42.857 18.66 0.00 35.23 2.92
163 164 4.084287 AGTTGCACAATGTGAGGATGATT 58.916 39.130 18.66 0.00 35.23 2.57
164 165 4.157289 AGTTGCACAATGTGAGGATGATTC 59.843 41.667 18.66 0.00 35.23 2.52
165 166 3.959293 TGCACAATGTGAGGATGATTCT 58.041 40.909 18.66 0.00 35.23 2.40
166 167 4.338012 TGCACAATGTGAGGATGATTCTT 58.662 39.130 18.66 0.00 35.23 2.52
168 169 5.945191 TGCACAATGTGAGGATGATTCTTTA 59.055 36.000 18.66 0.00 35.23 1.85
169 170 6.094464 TGCACAATGTGAGGATGATTCTTTAG 59.906 38.462 18.66 0.00 35.23 1.85
170 171 6.317140 GCACAATGTGAGGATGATTCTTTAGA 59.683 38.462 18.66 0.00 35.23 2.10
171 172 7.013083 GCACAATGTGAGGATGATTCTTTAGAT 59.987 37.037 18.66 0.00 35.23 1.98
172 173 8.343366 CACAATGTGAGGATGATTCTTTAGATG 58.657 37.037 7.78 0.00 35.23 2.90
173 174 7.013083 ACAATGTGAGGATGATTCTTTAGATGC 59.987 37.037 0.00 0.00 0.00 3.91
174 175 5.993055 TGTGAGGATGATTCTTTAGATGCA 58.007 37.500 0.00 0.00 0.00 3.96
175 176 6.598503 TGTGAGGATGATTCTTTAGATGCAT 58.401 36.000 0.00 0.00 0.00 3.96
177 178 5.472478 TGAGGATGATTCTTTAGATGCATGC 59.528 40.000 11.82 11.82 31.46 4.06
178 179 5.632118 AGGATGATTCTTTAGATGCATGCT 58.368 37.500 20.33 4.11 34.42 3.79
179 180 6.069331 AGGATGATTCTTTAGATGCATGCTT 58.931 36.000 20.33 13.23 35.09 3.91
180 181 6.550108 AGGATGATTCTTTAGATGCATGCTTT 59.450 34.615 20.33 6.31 35.09 3.51
181 182 7.069578 AGGATGATTCTTTAGATGCATGCTTTT 59.930 33.333 20.33 10.58 35.09 2.27
183 184 7.400599 TGATTCTTTAGATGCATGCTTTTCT 57.599 32.000 20.33 18.93 0.00 2.52
185 186 8.959548 TGATTCTTTAGATGCATGCTTTTCTTA 58.040 29.630 20.33 9.48 0.00 2.10
186 187 9.962783 GATTCTTTAGATGCATGCTTTTCTTAT 57.037 29.630 20.33 1.08 0.00 1.73
194 195 7.983484 AGATGCATGCTTTTCTTATTTTTAGGG 59.017 33.333 20.33 0.00 0.00 3.53
195 196 5.874261 TGCATGCTTTTCTTATTTTTAGGGC 59.126 36.000 20.33 0.00 0.00 5.19
197 198 6.539826 GCATGCTTTTCTTATTTTTAGGGCAT 59.460 34.615 11.37 0.00 37.19 4.40
198 199 7.066163 GCATGCTTTTCTTATTTTTAGGGCATT 59.934 33.333 11.37 0.00 35.02 3.56
199 200 8.949177 CATGCTTTTCTTATTTTTAGGGCATTT 58.051 29.630 0.00 0.00 35.02 2.32
200 201 8.916628 TGCTTTTCTTATTTTTAGGGCATTTT 57.083 26.923 0.00 0.00 0.00 1.82
202 203 8.236586 GCTTTTCTTATTTTTAGGGCATTTTGG 58.763 33.333 0.00 0.00 0.00 3.28
204 205 6.619329 TCTTATTTTTAGGGCATTTTGGCT 57.381 33.333 0.94 0.00 43.20 4.75
206 207 2.470983 TTTTAGGGCATTTTGGCTGC 57.529 45.000 0.94 0.00 43.20 5.25
208 209 0.607620 TTAGGGCATTTTGGCTGCAC 59.392 50.000 0.50 0.00 43.50 4.57
210 211 1.668793 GGGCATTTTGGCTGCACAC 60.669 57.895 0.50 0.00 42.69 3.82
212 213 0.320946 GGCATTTTGGCTGCACACAT 60.321 50.000 0.50 0.00 41.47 3.21
216 217 3.861886 GCATTTTGGCTGCACACATAACT 60.862 43.478 0.50 0.00 39.46 2.24
217 218 3.367992 TTTTGGCTGCACACATAACTG 57.632 42.857 0.50 0.00 0.00 3.16
224 225 3.004734 GCTGCACACATAACTGTTTCCTT 59.995 43.478 0.00 0.00 31.62 3.36
229 230 5.472137 GCACACATAACTGTTTCCTTAGGAA 59.528 40.000 10.01 10.01 40.27 3.36
231 232 7.335924 GCACACATAACTGTTTCCTTAGGAATA 59.664 37.037 15.09 4.19 41.71 1.75
234 235 9.396022 CACATAACTGTTTCCTTAGGAATACAT 57.604 33.333 15.09 10.00 41.71 2.29
244 245 7.676683 TCCTTAGGAATACATATAGATGGGC 57.323 40.000 0.00 0.00 37.39 5.36
647 965 9.658475 CTGTGTACTAGTACTACTACTACTACG 57.342 40.741 28.56 10.61 37.00 3.51
648 966 9.175312 TGTGTACTAGTACTACTACTACTACGT 57.825 37.037 28.56 0.00 37.00 3.57
828 2715 4.980805 GCAACGCACCACCTCGGA 62.981 66.667 0.00 0.00 38.63 4.55
1079 3048 3.580895 GAGAGAAAGGAGGACAGGAAAGT 59.419 47.826 0.00 0.00 0.00 2.66
1972 3986 0.896940 AACGTTCTCGGGAGGCTACA 60.897 55.000 0.00 0.00 41.85 2.74
2073 4250 3.910490 GTTGGCACGGCAAAGGCA 61.910 61.111 7.68 0.00 43.71 4.75
2302 4482 1.138568 CTGGGAGGCCATGAAGAGAT 58.861 55.000 5.01 0.00 0.00 2.75
3045 5464 0.893270 ATGCTTGGTTACAGCGGCAA 60.893 50.000 1.45 0.00 34.20 4.52
3137 5557 2.627945 CGCATGCCTTGGTAGTTAAGA 58.372 47.619 13.15 0.00 0.00 2.10
3248 5668 7.552458 TCATACGTATAGTTAGTCGGTTCAA 57.448 36.000 7.96 0.00 0.00 2.69
3286 5706 3.340034 CTGCATCCCGGTTGTAAAACTA 58.660 45.455 0.00 0.00 0.00 2.24
3294 5714 4.263435 CCGGTTGTAAAACTAAGGCCATA 58.737 43.478 5.01 0.00 0.00 2.74
3298 5718 5.106038 GGTTGTAAAACTAAGGCCATACCAC 60.106 44.000 5.01 0.00 43.14 4.16
3303 5724 4.650972 AACTAAGGCCATACCACTTCAA 57.349 40.909 5.01 0.00 43.14 2.69
3332 5753 4.103311 GGCATTTCCTCCTTCTAGTACCAT 59.897 45.833 0.00 0.00 0.00 3.55
3357 5778 0.536006 GTGCTCCAAGCCTCAAGTGT 60.536 55.000 0.00 0.00 41.51 3.55
3491 5916 1.402984 CGAGTAGTTCTGGGCTGACAC 60.403 57.143 0.00 0.00 0.00 3.67
3492 5917 1.618837 GAGTAGTTCTGGGCTGACACA 59.381 52.381 0.00 0.00 0.00 3.72
3493 5918 2.234908 GAGTAGTTCTGGGCTGACACAT 59.765 50.000 0.00 0.00 0.00 3.21
3494 5919 2.639839 AGTAGTTCTGGGCTGACACATT 59.360 45.455 0.00 0.00 0.00 2.71
3495 5920 2.664402 AGTTCTGGGCTGACACATTT 57.336 45.000 0.00 0.00 0.00 2.32
3581 6006 1.139455 GCCTTGCCATGCACCATTAAT 59.861 47.619 0.00 0.00 38.71 1.40
3582 6007 2.420408 GCCTTGCCATGCACCATTAATT 60.420 45.455 0.00 0.00 38.71 1.40
3632 6058 5.221303 CCCTATTTGGCAAACAGTATCCATG 60.221 44.000 16.00 0.00 0.00 3.66
3633 6059 4.741321 ATTTGGCAAACAGTATCCATGG 57.259 40.909 16.00 4.97 0.00 3.66
3634 6060 3.448093 TTGGCAAACAGTATCCATGGA 57.552 42.857 18.88 18.88 0.00 3.41
3635 6061 3.668141 TGGCAAACAGTATCCATGGAT 57.332 42.857 29.66 29.66 38.54 3.41
3636 6062 4.787135 TGGCAAACAGTATCCATGGATA 57.213 40.909 27.46 27.46 36.17 2.59
3637 6063 5.323382 TGGCAAACAGTATCCATGGATAT 57.677 39.130 32.15 19.99 39.04 1.63
3638 6064 6.446909 TGGCAAACAGTATCCATGGATATA 57.553 37.500 32.15 14.85 39.04 0.86
3639 6065 6.846988 TGGCAAACAGTATCCATGGATATAA 58.153 36.000 32.15 14.12 39.04 0.98
3640 6066 7.469343 TGGCAAACAGTATCCATGGATATAAT 58.531 34.615 32.15 20.33 39.04 1.28
3641 6067 7.394077 TGGCAAACAGTATCCATGGATATAATG 59.606 37.037 32.15 29.06 39.04 1.90
3642 6068 7.394359 GGCAAACAGTATCCATGGATATAATGT 59.606 37.037 32.15 29.58 39.04 2.71
3643 6069 8.796475 GCAAACAGTATCCATGGATATAATGTT 58.204 33.333 32.18 32.18 39.67 2.71
3667 6093 3.876309 TTAGAAATGGAGGCATACCCC 57.124 47.619 0.00 0.00 36.11 4.95
3668 6094 0.853530 AGAAATGGAGGCATACCCCC 59.146 55.000 0.00 0.00 36.11 5.40
3669 6095 0.537371 GAAATGGAGGCATACCCCCG 60.537 60.000 0.00 0.00 36.11 5.73
3670 6096 2.006805 AAATGGAGGCATACCCCCGG 62.007 60.000 0.00 0.00 36.11 5.73
3671 6097 3.731886 ATGGAGGCATACCCCCGGT 62.732 63.158 0.00 0.00 40.16 5.28
3672 6098 3.557290 GGAGGCATACCCCCGGTC 61.557 72.222 0.00 0.00 37.09 4.79
3673 6099 2.446036 GAGGCATACCCCCGGTCT 60.446 66.667 0.00 0.00 37.09 3.85
3674 6100 2.042261 AGGCATACCCCCGGTCTT 59.958 61.111 0.00 0.00 37.09 3.01
3675 6101 1.618447 AGGCATACCCCCGGTCTTT 60.618 57.895 0.00 0.00 37.09 2.52
3676 6102 0.326808 AGGCATACCCCCGGTCTTTA 60.327 55.000 0.00 0.00 37.09 1.85
3677 6103 0.108019 GGCATACCCCCGGTCTTTAG 59.892 60.000 0.00 0.00 37.09 1.85
3678 6104 1.125633 GCATACCCCCGGTCTTTAGA 58.874 55.000 0.00 0.00 37.09 2.10
3679 6105 1.697982 GCATACCCCCGGTCTTTAGAT 59.302 52.381 0.00 0.00 37.09 1.98
3680 6106 2.289506 GCATACCCCCGGTCTTTAGATC 60.290 54.545 0.00 0.00 37.09 2.75
3681 6107 2.852714 TACCCCCGGTCTTTAGATCA 57.147 50.000 0.00 0.00 37.09 2.92
3682 6108 2.191981 ACCCCCGGTCTTTAGATCAT 57.808 50.000 0.00 0.00 0.00 2.45
3683 6109 1.768870 ACCCCCGGTCTTTAGATCATG 59.231 52.381 0.00 0.00 0.00 3.07
3684 6110 2.047061 CCCCCGGTCTTTAGATCATGA 58.953 52.381 0.00 0.00 0.00 3.07
3685 6111 2.639839 CCCCCGGTCTTTAGATCATGAT 59.360 50.000 8.25 8.25 0.00 2.45
3686 6112 3.557898 CCCCCGGTCTTTAGATCATGATG 60.558 52.174 14.30 0.00 0.00 3.07
3687 6113 3.324846 CCCCGGTCTTTAGATCATGATGA 59.675 47.826 14.30 0.00 0.00 2.92
3688 6114 4.019860 CCCCGGTCTTTAGATCATGATGAT 60.020 45.833 14.30 7.81 40.34 2.45
3689 6115 4.934001 CCCGGTCTTTAGATCATGATGATG 59.066 45.833 14.30 0.00 37.20 3.07
3690 6116 4.391216 CCGGTCTTTAGATCATGATGATGC 59.609 45.833 14.30 4.86 37.20 3.91
3691 6117 4.992951 CGGTCTTTAGATCATGATGATGCA 59.007 41.667 14.30 0.00 37.20 3.96
3692 6118 5.642491 CGGTCTTTAGATCATGATGATGCAT 59.358 40.000 14.30 0.00 37.20 3.96
3693 6119 6.402226 CGGTCTTTAGATCATGATGATGCATG 60.402 42.308 14.30 0.00 45.41 4.06
3694 6120 6.315551 GTCTTTAGATCATGATGATGCATGC 58.684 40.000 14.30 11.82 44.08 4.06
3695 6121 4.939509 TTAGATCATGATGATGCATGCG 57.060 40.909 14.30 0.00 44.08 4.73
3696 6122 2.084546 AGATCATGATGATGCATGCGG 58.915 47.619 14.30 0.00 44.08 5.69
3697 6123 0.526211 ATCATGATGATGCATGCGGC 59.474 50.000 14.09 7.96 44.08 6.53
3698 6124 1.080772 CATGATGATGCATGCGGCC 60.081 57.895 14.09 5.01 43.89 6.13
3699 6125 2.273179 ATGATGATGCATGCGGCCC 61.273 57.895 14.09 2.37 43.89 5.80
3700 6126 2.596631 GATGATGCATGCGGCCCT 60.597 61.111 14.09 0.00 43.89 5.19
3701 6127 1.302752 GATGATGCATGCGGCCCTA 60.303 57.895 14.09 0.00 43.89 3.53
3702 6128 0.679002 GATGATGCATGCGGCCCTAT 60.679 55.000 14.09 0.00 43.89 2.57
3703 6129 0.679002 ATGATGCATGCGGCCCTATC 60.679 55.000 14.09 9.71 43.89 2.08
3704 6130 2.034687 ATGCATGCGGCCCTATCC 59.965 61.111 14.09 0.00 43.89 2.59
3705 6131 2.753009 GATGCATGCGGCCCTATCCA 62.753 60.000 14.09 0.00 43.89 3.41
3706 6132 2.034687 GCATGCGGCCCTATCCAT 59.965 61.111 0.00 0.00 36.11 3.41
3707 6133 2.338015 GCATGCGGCCCTATCCATG 61.338 63.158 0.00 3.98 38.41 3.66
3708 6134 1.676635 CATGCGGCCCTATCCATGG 60.677 63.158 4.97 4.97 33.28 3.66
3715 6141 3.073062 GCGGCCCTATCCATGGATATAAT 59.927 47.826 30.35 12.15 36.62 1.28
3743 6169 8.202745 AGTTTTAGTTTCACTTCAGAGTTCTG 57.797 34.615 2.69 2.69 45.08 3.02
3759 6185 1.774639 TCTGTTTCGCGTCCTGTAAC 58.225 50.000 5.77 3.31 0.00 2.50
3770 6196 1.933853 GTCCTGTAACGTGCCATCATC 59.066 52.381 0.00 0.00 0.00 2.92
3777 6203 2.533266 ACGTGCCATCATCATAGGTC 57.467 50.000 0.00 0.00 0.00 3.85
3780 6206 3.118261 ACGTGCCATCATCATAGGTCTTT 60.118 43.478 0.00 0.00 0.00 2.52
3821 6247 8.918202 TGATTGAATCTTGTACTAAAACTGGT 57.082 30.769 6.73 0.00 0.00 4.00
3823 6249 8.691661 ATTGAATCTTGTACTAAAACTGGTGT 57.308 30.769 0.00 0.00 0.00 4.16
3846 6272 2.213499 GTGGATTCCACGCTCTATTGG 58.787 52.381 19.65 0.00 44.95 3.16
3847 6273 1.230324 GGATTCCACGCTCTATTGGC 58.770 55.000 0.00 0.00 32.37 4.52
3864 6290 9.938670 CTCTATTGGCTCGATTATACATACTAC 57.061 37.037 0.00 0.00 0.00 2.73
3870 6296 7.231925 TGGCTCGATTATACATACTACTGGAAA 59.768 37.037 0.00 0.00 0.00 3.13
3901 6327 3.617540 AATCGAGACATGTAGCGAGAG 57.382 47.619 21.88 2.69 36.12 3.20
3914 6340 7.712639 ACATGTAGCGAGAGTAAATCAATCAAT 59.287 33.333 0.00 0.00 0.00 2.57
3933 6359 8.445493 CAATCAATTTTACCAATGAAAGGAAGC 58.555 33.333 0.00 0.00 0.00 3.86
4017 6443 2.483876 CATCATGTACACGGGATGACC 58.516 52.381 20.96 0.00 39.52 4.02
4034 6460 2.669133 CCCATCGCCCTTGTCAGGA 61.669 63.158 0.00 0.00 44.19 3.86
4035 6461 1.153289 CCATCGCCCTTGTCAGGAG 60.153 63.158 0.00 0.00 44.19 3.69
4036 6462 1.817099 CATCGCCCTTGTCAGGAGC 60.817 63.158 0.00 0.00 44.19 4.70
4037 6463 2.293318 ATCGCCCTTGTCAGGAGCA 61.293 57.895 0.00 0.00 44.19 4.26
4038 6464 1.630126 ATCGCCCTTGTCAGGAGCAT 61.630 55.000 0.00 0.00 44.19 3.79
4039 6465 0.975556 TCGCCCTTGTCAGGAGCATA 60.976 55.000 0.00 0.00 44.19 3.14
4040 6466 0.107456 CGCCCTTGTCAGGAGCATAT 59.893 55.000 0.00 0.00 44.19 1.78
4041 6467 1.875576 CGCCCTTGTCAGGAGCATATC 60.876 57.143 0.00 0.00 44.19 1.63
4042 6468 1.141657 GCCCTTGTCAGGAGCATATCA 59.858 52.381 0.00 0.00 44.19 2.15
4043 6469 2.224719 GCCCTTGTCAGGAGCATATCAT 60.225 50.000 0.00 0.00 44.19 2.45
4044 6470 3.672808 CCCTTGTCAGGAGCATATCATC 58.327 50.000 0.00 0.00 44.19 2.92
4045 6471 3.072038 CCCTTGTCAGGAGCATATCATCA 59.928 47.826 0.00 0.00 44.19 3.07
4046 6472 4.263374 CCCTTGTCAGGAGCATATCATCAT 60.263 45.833 0.00 0.00 44.19 2.45
4047 6473 5.314529 CCTTGTCAGGAGCATATCATCATT 58.685 41.667 0.00 0.00 44.19 2.57
4048 6474 5.181433 CCTTGTCAGGAGCATATCATCATTG 59.819 44.000 0.00 0.00 44.19 2.82
4049 6475 5.556006 TGTCAGGAGCATATCATCATTGA 57.444 39.130 0.00 0.00 36.00 2.57
4050 6476 6.123045 TGTCAGGAGCATATCATCATTGAT 57.877 37.500 0.00 0.00 44.76 2.57
4051 6477 5.938125 TGTCAGGAGCATATCATCATTGATG 59.062 40.000 18.71 18.71 42.60 3.07
4052 6478 4.941873 TCAGGAGCATATCATCATTGATGC 59.058 41.667 19.74 10.81 42.60 3.91
4053 6479 4.096532 CAGGAGCATATCATCATTGATGCC 59.903 45.833 19.74 13.51 42.60 4.40
4054 6480 4.018324 AGGAGCATATCATCATTGATGCCT 60.018 41.667 19.74 15.25 42.60 4.75
4055 6481 4.096532 GGAGCATATCATCATTGATGCCTG 59.903 45.833 19.74 16.29 42.60 4.85
4056 6482 4.663334 AGCATATCATCATTGATGCCTGT 58.337 39.130 19.74 9.44 42.60 4.00
4057 6483 4.459337 AGCATATCATCATTGATGCCTGTG 59.541 41.667 19.74 17.05 42.60 3.66
4058 6484 4.733850 CATATCATCATTGATGCCTGTGC 58.266 43.478 19.74 0.00 42.60 4.57
4059 6485 1.018910 TCATCATTGATGCCTGTGCG 58.981 50.000 19.74 0.00 39.63 5.34
4060 6486 0.030235 CATCATTGATGCCTGTGCGG 59.970 55.000 13.43 0.00 41.78 5.69
4061 6487 0.107066 ATCATTGATGCCTGTGCGGA 60.107 50.000 0.00 0.00 41.78 5.54
4062 6488 0.322366 TCATTGATGCCTGTGCGGAA 60.322 50.000 0.00 0.00 41.78 4.30
4063 6489 0.099968 CATTGATGCCTGTGCGGAAG 59.900 55.000 0.00 0.00 41.78 3.46
4064 6490 0.322816 ATTGATGCCTGTGCGGAAGT 60.323 50.000 0.00 0.00 41.78 3.01
4065 6491 1.236616 TTGATGCCTGTGCGGAAGTG 61.237 55.000 0.00 0.00 41.78 3.16
4066 6492 1.672356 GATGCCTGTGCGGAAGTGT 60.672 57.895 0.00 0.00 41.78 3.55
4067 6493 1.915614 GATGCCTGTGCGGAAGTGTG 61.916 60.000 0.00 0.00 41.78 3.82
4068 6494 4.030452 GCCTGTGCGGAAGTGTGC 62.030 66.667 0.00 0.00 33.16 4.57
4069 6495 2.281070 CCTGTGCGGAAGTGTGCT 60.281 61.111 0.00 0.00 33.16 4.40
4070 6496 1.005037 CCTGTGCGGAAGTGTGCTA 60.005 57.895 0.00 0.00 33.16 3.49
4071 6497 1.291877 CCTGTGCGGAAGTGTGCTAC 61.292 60.000 0.00 0.00 33.16 3.58
4072 6498 0.319900 CTGTGCGGAAGTGTGCTACT 60.320 55.000 0.00 0.00 42.89 2.57
4079 6505 4.386413 AGTGTGCTACTTGCCTGC 57.614 55.556 0.00 0.00 42.00 4.85
4080 6506 1.451504 AGTGTGCTACTTGCCTGCA 59.548 52.632 0.00 0.00 42.00 4.41
4081 6507 0.037303 AGTGTGCTACTTGCCTGCAT 59.963 50.000 0.00 0.00 42.00 3.96
4082 6508 0.449388 GTGTGCTACTTGCCTGCATC 59.551 55.000 0.00 0.00 42.00 3.91
4083 6509 0.325933 TGTGCTACTTGCCTGCATCT 59.674 50.000 0.00 0.00 42.00 2.90
4084 6510 1.012841 GTGCTACTTGCCTGCATCTC 58.987 55.000 0.00 0.00 42.00 2.75
4085 6511 0.907486 TGCTACTTGCCTGCATCTCT 59.093 50.000 0.00 0.00 42.00 3.10
4086 6512 1.297664 GCTACTTGCCTGCATCTCTG 58.702 55.000 0.00 0.00 35.15 3.35
4087 6513 2.671655 GCTACTTGCCTGCATCTCTGC 61.672 57.143 0.00 0.00 41.55 4.26
4096 6522 1.446791 GCATCTCTGCCTCCTCAGG 59.553 63.158 0.00 0.00 42.88 3.86
4097 6523 1.336632 GCATCTCTGCCTCCTCAGGT 61.337 60.000 0.00 0.00 42.74 4.00
4098 6524 0.752054 CATCTCTGCCTCCTCAGGTC 59.248 60.000 0.00 0.00 42.74 3.85
4099 6525 0.337773 ATCTCTGCCTCCTCAGGTCA 59.662 55.000 0.00 0.00 42.74 4.02
4100 6526 0.115152 TCTCTGCCTCCTCAGGTCAA 59.885 55.000 0.00 0.00 42.74 3.18
4101 6527 0.536260 CTCTGCCTCCTCAGGTCAAG 59.464 60.000 0.00 0.00 42.74 3.02
4102 6528 0.906756 TCTGCCTCCTCAGGTCAAGG 60.907 60.000 0.00 0.00 42.74 3.61
4103 6529 0.906756 CTGCCTCCTCAGGTCAAGGA 60.907 60.000 0.77 0.00 42.74 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.275617 TGTACCAATCATACCTGGCAC 57.724 47.619 0.00 0.00 36.03 5.01
6 7 3.067106 GCCGATGTACCAATCATACCTG 58.933 50.000 0.00 0.00 0.00 4.00
7 8 2.703536 TGCCGATGTACCAATCATACCT 59.296 45.455 0.00 0.00 0.00 3.08
8 9 3.120321 TGCCGATGTACCAATCATACC 57.880 47.619 0.00 0.00 0.00 2.73
14 15 3.819368 TGATCAATGCCGATGTACCAAT 58.181 40.909 0.00 0.00 0.00 3.16
17 18 4.333649 CCATATGATCAATGCCGATGTACC 59.666 45.833 3.65 0.00 0.00 3.34
18 19 5.178061 TCCATATGATCAATGCCGATGTAC 58.822 41.667 3.65 0.00 0.00 2.90
19 20 5.419239 TCCATATGATCAATGCCGATGTA 57.581 39.130 3.65 0.00 0.00 2.29
24 25 2.751259 CCCTTCCATATGATCAATGCCG 59.249 50.000 3.65 0.00 0.00 5.69
26 27 7.707624 TTAATCCCTTCCATATGATCAATGC 57.292 36.000 3.65 0.00 0.00 3.56
27 28 8.692710 CCATTAATCCCTTCCATATGATCAATG 58.307 37.037 3.65 5.28 0.00 2.82
29 30 7.768643 ACCATTAATCCCTTCCATATGATCAA 58.231 34.615 3.65 0.00 0.00 2.57
30 31 7.347319 ACCATTAATCCCTTCCATATGATCA 57.653 36.000 3.65 0.00 0.00 2.92
31 32 9.178758 GTAACCATTAATCCCTTCCATATGATC 57.821 37.037 3.65 0.00 0.00 2.92
32 33 7.829211 CGTAACCATTAATCCCTTCCATATGAT 59.171 37.037 3.65 0.00 0.00 2.45
33 34 7.016760 TCGTAACCATTAATCCCTTCCATATGA 59.983 37.037 3.65 0.00 0.00 2.15
34 35 7.119262 GTCGTAACCATTAATCCCTTCCATATG 59.881 40.741 0.00 0.00 0.00 1.78
35 36 7.017254 AGTCGTAACCATTAATCCCTTCCATAT 59.983 37.037 0.00 0.00 0.00 1.78
36 37 6.328148 AGTCGTAACCATTAATCCCTTCCATA 59.672 38.462 0.00 0.00 0.00 2.74
37 38 5.132144 AGTCGTAACCATTAATCCCTTCCAT 59.868 40.000 0.00 0.00 0.00 3.41
39 40 4.814771 CAGTCGTAACCATTAATCCCTTCC 59.185 45.833 0.00 0.00 0.00 3.46
41 42 4.384868 CCCAGTCGTAACCATTAATCCCTT 60.385 45.833 0.00 0.00 0.00 3.95
42 43 3.135895 CCCAGTCGTAACCATTAATCCCT 59.864 47.826 0.00 0.00 0.00 4.20
43 44 3.135167 TCCCAGTCGTAACCATTAATCCC 59.865 47.826 0.00 0.00 0.00 3.85
45 46 5.163437 ACTCTCCCAGTCGTAACCATTAATC 60.163 44.000 0.00 0.00 0.00 1.75
46 47 4.715297 ACTCTCCCAGTCGTAACCATTAAT 59.285 41.667 0.00 0.00 0.00 1.40
47 48 4.081862 CACTCTCCCAGTCGTAACCATTAA 60.082 45.833 0.00 0.00 30.26 1.40
48 49 3.446161 CACTCTCCCAGTCGTAACCATTA 59.554 47.826 0.00 0.00 30.26 1.90
49 50 2.233922 CACTCTCCCAGTCGTAACCATT 59.766 50.000 0.00 0.00 30.26 3.16
50 51 1.825474 CACTCTCCCAGTCGTAACCAT 59.175 52.381 0.00 0.00 30.26 3.55
51 52 1.254026 CACTCTCCCAGTCGTAACCA 58.746 55.000 0.00 0.00 30.26 3.67
53 54 0.531200 CCCACTCTCCCAGTCGTAAC 59.469 60.000 0.00 0.00 30.26 2.50
54 55 0.406750 TCCCACTCTCCCAGTCGTAA 59.593 55.000 0.00 0.00 30.26 3.18
55 56 0.034380 CTCCCACTCTCCCAGTCGTA 60.034 60.000 0.00 0.00 30.26 3.43
56 57 1.304547 CTCCCACTCTCCCAGTCGT 60.305 63.158 0.00 0.00 30.26 4.34
57 58 2.716017 GCTCCCACTCTCCCAGTCG 61.716 68.421 0.00 0.00 30.26 4.18
58 59 2.716017 CGCTCCCACTCTCCCAGTC 61.716 68.421 0.00 0.00 30.26 3.51
59 60 2.681778 CGCTCCCACTCTCCCAGT 60.682 66.667 0.00 0.00 34.67 4.00
60 61 2.363018 TCGCTCCCACTCTCCCAG 60.363 66.667 0.00 0.00 0.00 4.45
61 62 2.363018 CTCGCTCCCACTCTCCCA 60.363 66.667 0.00 0.00 0.00 4.37
62 63 2.363147 ACTCGCTCCCACTCTCCC 60.363 66.667 0.00 0.00 0.00 4.30
63 64 2.419739 GGACTCGCTCCCACTCTCC 61.420 68.421 0.00 0.00 31.83 3.71
64 65 3.202467 GGACTCGCTCCCACTCTC 58.798 66.667 0.00 0.00 31.83 3.20
78 79 0.250770 GAACCACAACCAGGAGGGAC 60.251 60.000 0.00 0.00 41.15 4.46
79 80 0.401395 AGAACCACAACCAGGAGGGA 60.401 55.000 0.00 0.00 41.15 4.20
81 82 2.158608 AGAAAGAACCACAACCAGGAGG 60.159 50.000 0.00 0.00 42.21 4.30
82 83 2.880890 CAGAAAGAACCACAACCAGGAG 59.119 50.000 0.00 0.00 0.00 3.69
83 84 2.422803 CCAGAAAGAACCACAACCAGGA 60.423 50.000 0.00 0.00 0.00 3.86
84 85 1.956477 CCAGAAAGAACCACAACCAGG 59.044 52.381 0.00 0.00 0.00 4.45
86 87 2.818751 ACCAGAAAGAACCACAACCA 57.181 45.000 0.00 0.00 0.00 3.67
87 88 2.552743 GCTACCAGAAAGAACCACAACC 59.447 50.000 0.00 0.00 0.00 3.77
88 89 3.211045 TGCTACCAGAAAGAACCACAAC 58.789 45.455 0.00 0.00 0.00 3.32
89 90 3.569194 TGCTACCAGAAAGAACCACAA 57.431 42.857 0.00 0.00 0.00 3.33
90 91 3.411446 CATGCTACCAGAAAGAACCACA 58.589 45.455 0.00 0.00 0.00 4.17
91 92 2.749621 CCATGCTACCAGAAAGAACCAC 59.250 50.000 0.00 0.00 0.00 4.16
92 93 2.642311 TCCATGCTACCAGAAAGAACCA 59.358 45.455 0.00 0.00 0.00 3.67
93 94 3.274288 CTCCATGCTACCAGAAAGAACC 58.726 50.000 0.00 0.00 0.00 3.62
94 95 2.680339 GCTCCATGCTACCAGAAAGAAC 59.320 50.000 0.00 0.00 38.95 3.01
95 96 2.356125 GGCTCCATGCTACCAGAAAGAA 60.356 50.000 0.00 0.00 42.39 2.52
96 97 1.210478 GGCTCCATGCTACCAGAAAGA 59.790 52.381 0.00 0.00 42.39 2.52
97 98 1.211457 AGGCTCCATGCTACCAGAAAG 59.789 52.381 0.00 0.00 42.39 2.62
98 99 1.065199 CAGGCTCCATGCTACCAGAAA 60.065 52.381 0.00 0.00 42.39 2.52
99 100 0.543277 CAGGCTCCATGCTACCAGAA 59.457 55.000 0.00 0.00 42.39 3.02
100 101 1.340399 CCAGGCTCCATGCTACCAGA 61.340 60.000 0.00 0.00 42.39 3.86
101 102 1.147824 CCAGGCTCCATGCTACCAG 59.852 63.158 0.00 0.00 42.39 4.00
102 103 0.695462 ATCCAGGCTCCATGCTACCA 60.695 55.000 0.00 0.00 42.39 3.25
104 105 3.492102 TTAATCCAGGCTCCATGCTAC 57.508 47.619 0.00 0.00 42.39 3.58
106 107 3.386932 TTTTAATCCAGGCTCCATGCT 57.613 42.857 0.00 0.00 42.39 3.79
108 109 3.385755 CCCTTTTTAATCCAGGCTCCATG 59.614 47.826 0.00 0.00 0.00 3.66
110 111 2.381961 ACCCTTTTTAATCCAGGCTCCA 59.618 45.455 0.00 0.00 0.00 3.86
111 112 3.024547 GACCCTTTTTAATCCAGGCTCC 58.975 50.000 0.00 0.00 0.00 4.70
112 113 3.696548 CTGACCCTTTTTAATCCAGGCTC 59.303 47.826 0.00 0.00 0.00 4.70
113 114 3.076032 ACTGACCCTTTTTAATCCAGGCT 59.924 43.478 0.00 0.00 0.00 4.58
114 115 3.431415 ACTGACCCTTTTTAATCCAGGC 58.569 45.455 0.00 0.00 0.00 4.85
115 116 5.417894 GGTAACTGACCCTTTTTAATCCAGG 59.582 44.000 0.00 0.00 43.25 4.45
123 124 9.915707 TGTGCAACTAGGTAACTGACCCTTTTT 62.916 40.741 0.00 0.00 44.17 1.94
124 125 8.551025 TGTGCAACTAGGTAACTGACCCTTTT 62.551 42.308 0.00 0.00 44.17 2.27
125 126 7.157004 TGTGCAACTAGGTAACTGACCCTTT 62.157 44.000 0.00 0.00 44.17 3.11
126 127 5.729954 TGTGCAACTAGGTAACTGACCCTT 61.730 45.833 0.00 0.00 44.17 3.95
127 128 4.265542 TGTGCAACTAGGTAACTGACCCT 61.266 47.826 0.00 0.00 44.17 4.34
129 130 3.396260 TGTGCAACTAGGTAACTGACC 57.604 47.619 0.00 0.00 42.92 4.02
130 131 4.755123 ACATTGTGCAACTAGGTAACTGAC 59.245 41.667 0.00 0.00 42.92 3.51
131 132 4.754618 CACATTGTGCAACTAGGTAACTGA 59.245 41.667 3.43 0.00 42.92 3.41
132 133 4.754618 TCACATTGTGCAACTAGGTAACTG 59.245 41.667 12.04 0.00 42.92 3.16
133 134 4.968259 TCACATTGTGCAACTAGGTAACT 58.032 39.130 12.04 0.00 33.73 2.24
135 136 4.041075 TCCTCACATTGTGCAACTAGGTAA 59.959 41.667 12.04 0.00 33.73 2.85
136 137 3.580895 TCCTCACATTGTGCAACTAGGTA 59.419 43.478 12.04 1.86 33.73 3.08
137 138 2.371841 TCCTCACATTGTGCAACTAGGT 59.628 45.455 12.04 0.00 36.98 3.08
138 139 3.057969 TCCTCACATTGTGCAACTAGG 57.942 47.619 12.04 12.56 38.04 3.02
139 140 4.256110 TCATCCTCACATTGTGCAACTAG 58.744 43.478 12.04 3.92 38.04 2.57
140 141 4.284829 TCATCCTCACATTGTGCAACTA 57.715 40.909 12.04 0.00 38.04 2.24
142 143 4.157289 AGAATCATCCTCACATTGTGCAAC 59.843 41.667 12.04 0.00 32.98 4.17
143 144 4.338012 AGAATCATCCTCACATTGTGCAA 58.662 39.130 12.04 0.43 32.98 4.08
144 145 3.959293 AGAATCATCCTCACATTGTGCA 58.041 40.909 12.04 0.90 32.98 4.57
145 146 4.978083 AAGAATCATCCTCACATTGTGC 57.022 40.909 12.04 0.00 32.98 4.57
146 147 7.854557 TCTAAAGAATCATCCTCACATTGTG 57.145 36.000 10.64 10.64 34.45 3.33
147 148 7.013083 GCATCTAAAGAATCATCCTCACATTGT 59.987 37.037 0.00 0.00 0.00 2.71
148 149 7.012989 TGCATCTAAAGAATCATCCTCACATTG 59.987 37.037 0.00 0.00 0.00 2.82
149 150 7.058525 TGCATCTAAAGAATCATCCTCACATT 58.941 34.615 0.00 0.00 0.00 2.71
150 151 6.598503 TGCATCTAAAGAATCATCCTCACAT 58.401 36.000 0.00 0.00 0.00 3.21
151 152 5.993055 TGCATCTAAAGAATCATCCTCACA 58.007 37.500 0.00 0.00 0.00 3.58
153 154 5.472478 GCATGCATCTAAAGAATCATCCTCA 59.528 40.000 14.21 0.00 0.00 3.86
154 155 5.706369 AGCATGCATCTAAAGAATCATCCTC 59.294 40.000 21.98 0.00 0.00 3.71
155 156 5.632118 AGCATGCATCTAAAGAATCATCCT 58.368 37.500 21.98 0.00 0.00 3.24
156 157 5.961396 AGCATGCATCTAAAGAATCATCC 57.039 39.130 21.98 0.00 0.00 3.51
158 159 8.008513 AGAAAAGCATGCATCTAAAGAATCAT 57.991 30.769 21.98 0.00 0.00 2.45
159 160 7.400599 AGAAAAGCATGCATCTAAAGAATCA 57.599 32.000 21.98 0.00 0.00 2.57
160 161 9.962783 ATAAGAAAAGCATGCATCTAAAGAATC 57.037 29.630 21.98 3.31 0.00 2.52
168 169 7.983484 CCCTAAAAATAAGAAAAGCATGCATCT 59.017 33.333 21.98 16.77 0.00 2.90
169 170 7.254556 GCCCTAAAAATAAGAAAAGCATGCATC 60.255 37.037 21.98 14.71 0.00 3.91
170 171 6.539826 GCCCTAAAAATAAGAAAAGCATGCAT 59.460 34.615 21.98 4.57 0.00 3.96
171 172 5.874261 GCCCTAAAAATAAGAAAAGCATGCA 59.126 36.000 21.98 0.00 0.00 3.96
172 173 5.874261 TGCCCTAAAAATAAGAAAAGCATGC 59.126 36.000 10.51 10.51 0.00 4.06
173 174 8.496707 AATGCCCTAAAAATAAGAAAAGCATG 57.503 30.769 0.00 0.00 37.31 4.06
174 175 9.519191 AAAATGCCCTAAAAATAAGAAAAGCAT 57.481 25.926 0.00 0.00 38.78 3.79
175 176 8.782144 CAAAATGCCCTAAAAATAAGAAAAGCA 58.218 29.630 0.00 0.00 0.00 3.91
177 178 8.236586 GCCAAAATGCCCTAAAAATAAGAAAAG 58.763 33.333 0.00 0.00 0.00 2.27
178 179 7.941790 AGCCAAAATGCCCTAAAAATAAGAAAA 59.058 29.630 0.00 0.00 0.00 2.29
179 180 7.390162 CAGCCAAAATGCCCTAAAAATAAGAAA 59.610 33.333 0.00 0.00 0.00 2.52
180 181 6.878389 CAGCCAAAATGCCCTAAAAATAAGAA 59.122 34.615 0.00 0.00 0.00 2.52
181 182 6.405538 CAGCCAAAATGCCCTAAAAATAAGA 58.594 36.000 0.00 0.00 0.00 2.10
183 184 4.940654 GCAGCCAAAATGCCCTAAAAATAA 59.059 37.500 0.00 0.00 37.73 1.40
185 186 3.244840 TGCAGCCAAAATGCCCTAAAAAT 60.245 39.130 0.00 0.00 43.18 1.82
186 187 2.105477 TGCAGCCAAAATGCCCTAAAAA 59.895 40.909 0.00 0.00 43.18 1.94
188 189 1.001860 GTGCAGCCAAAATGCCCTAAA 59.998 47.619 0.00 0.00 43.18 1.85
189 190 0.607620 GTGCAGCCAAAATGCCCTAA 59.392 50.000 0.00 0.00 43.18 2.69
190 191 0.541530 TGTGCAGCCAAAATGCCCTA 60.542 50.000 0.00 0.00 43.18 3.53
191 192 1.837947 TGTGCAGCCAAAATGCCCT 60.838 52.632 0.00 0.00 43.18 5.19
192 193 1.668793 GTGTGCAGCCAAAATGCCC 60.669 57.895 0.00 0.00 43.18 5.36
194 195 2.367030 TATGTGTGCAGCCAAAATGC 57.633 45.000 0.00 0.00 44.11 3.56
195 196 3.676172 CAGTTATGTGTGCAGCCAAAATG 59.324 43.478 0.00 0.00 0.00 2.32
197 198 2.692557 ACAGTTATGTGTGCAGCCAAAA 59.307 40.909 0.00 0.00 38.57 2.44
198 199 2.305928 ACAGTTATGTGTGCAGCCAAA 58.694 42.857 0.00 0.00 38.57 3.28
199 200 1.979855 ACAGTTATGTGTGCAGCCAA 58.020 45.000 0.00 0.00 38.57 4.52
200 201 1.979855 AACAGTTATGTGTGCAGCCA 58.020 45.000 0.00 0.00 40.39 4.75
202 203 2.554032 AGGAAACAGTTATGTGTGCAGC 59.446 45.455 0.00 0.00 37.45 5.25
204 205 4.759693 CCTAAGGAAACAGTTATGTGTGCA 59.240 41.667 0.00 0.00 37.45 4.57
206 207 7.687941 ATTCCTAAGGAAACAGTTATGTGTG 57.312 36.000 0.00 0.00 45.41 3.82
208 209 8.786826 TGTATTCCTAAGGAAACAGTTATGTG 57.213 34.615 0.00 0.00 45.41 3.21
217 218 9.892130 CCCATCTATATGTATTCCTAAGGAAAC 57.108 37.037 0.00 0.00 45.41 2.78
224 225 9.685276 CAAAATGCCCATCTATATGTATTCCTA 57.315 33.333 0.00 0.00 0.00 2.94
229 230 8.938801 TCAACAAAATGCCCATCTATATGTAT 57.061 30.769 0.00 0.00 0.00 2.29
231 232 6.835488 ACTCAACAAAATGCCCATCTATATGT 59.165 34.615 0.00 0.00 0.00 2.29
234 235 6.422333 TGACTCAACAAAATGCCCATCTATA 58.578 36.000 0.00 0.00 0.00 1.31
235 236 5.263599 TGACTCAACAAAATGCCCATCTAT 58.736 37.500 0.00 0.00 0.00 1.98
236 237 4.661222 TGACTCAACAAAATGCCCATCTA 58.339 39.130 0.00 0.00 0.00 1.98
238 239 3.940209 TGACTCAACAAAATGCCCATC 57.060 42.857 0.00 0.00 0.00 3.51
244 245 5.894807 AGACAGGTTTGACTCAACAAAATG 58.105 37.500 0.00 0.00 40.62 2.32
383 384 5.641155 AGTTTCCTTAACTACCAAGGCATT 58.359 37.500 0.00 0.00 45.22 3.56
1079 3048 4.783621 GCATGAGGGCTGCCACGA 62.784 66.667 22.05 2.87 33.44 4.35
1104 3073 4.082523 CCGTGCATCTCCGGTGGT 62.083 66.667 0.00 0.00 39.38 4.16
1770 3784 1.607801 CCTCCTGCATGGTCTCGACA 61.608 60.000 0.00 0.00 37.07 4.35
1972 3986 2.511637 GGGTCTTCATCTCCTCCCAATT 59.488 50.000 0.00 0.00 35.43 2.32
2204 4381 3.091190 TGGTTGTCGGGGTGTGGT 61.091 61.111 0.00 0.00 0.00 4.16
2302 4482 4.738998 CTTGCCGCCCCATGACCA 62.739 66.667 0.00 0.00 0.00 4.02
2366 4681 2.996985 TGGCTGACCATAGAGCACT 58.003 52.632 0.00 0.00 42.67 4.40
3045 5464 3.195825 CCTGGCTAAGTAACTGCTACTGT 59.804 47.826 0.00 0.00 40.14 3.55
3117 5536 2.627945 TCTTAACTACCAAGGCATGCG 58.372 47.619 12.44 0.00 0.00 4.73
3248 5668 5.221742 GGATGCAGCTCCTTTTATAGGTAGT 60.222 44.000 0.22 0.00 45.03 2.73
3286 5706 4.584638 TGTATTGAAGTGGTATGGCCTT 57.415 40.909 3.32 0.00 38.35 4.35
3294 5714 4.220602 GGAAATGCCTTGTATTGAAGTGGT 59.779 41.667 0.00 0.00 0.00 4.16
3332 5753 2.280797 GGCTTGGAGCACACACGA 60.281 61.111 2.04 0.00 44.75 4.35
3379 5800 3.373849 TGTATCACACACACACACGTAC 58.626 45.455 0.00 0.00 30.04 3.67
3520 5945 8.391106 CAAATCAGTAGAATTCTTAGGAAACCG 58.609 37.037 14.36 0.00 34.90 4.44
3604 6029 4.046286 ACTGTTTGCCAAATAGGGATGA 57.954 40.909 16.80 0.00 37.68 2.92
3644 6070 4.959839 GGGGTATGCCTCCATTTCTAAAAA 59.040 41.667 0.00 0.00 32.85 1.94
3645 6071 4.542697 GGGGTATGCCTCCATTTCTAAAA 58.457 43.478 0.00 0.00 32.85 1.52
3646 6072 4.178956 GGGGTATGCCTCCATTTCTAAA 57.821 45.455 0.00 0.00 32.85 1.85
3647 6073 3.876309 GGGGTATGCCTCCATTTCTAA 57.124 47.619 0.00 0.00 32.85 2.10
3656 6082 1.632965 AAAGACCGGGGGTATGCCTC 61.633 60.000 6.32 0.00 35.25 4.70
3657 6083 0.326808 TAAAGACCGGGGGTATGCCT 60.327 55.000 6.32 0.00 35.25 4.75
3658 6084 0.108019 CTAAAGACCGGGGGTATGCC 59.892 60.000 6.32 0.00 35.25 4.40
3659 6085 1.125633 TCTAAAGACCGGGGGTATGC 58.874 55.000 6.32 0.00 35.25 3.14
3660 6086 2.969950 TGATCTAAAGACCGGGGGTATG 59.030 50.000 6.32 0.00 35.25 2.39
3661 6087 3.339713 TGATCTAAAGACCGGGGGTAT 57.660 47.619 6.32 0.00 35.25 2.73
3662 6088 2.852714 TGATCTAAAGACCGGGGGTA 57.147 50.000 6.32 0.00 35.25 3.69
3663 6089 1.768870 CATGATCTAAAGACCGGGGGT 59.231 52.381 6.32 0.00 39.44 4.95
3664 6090 2.047061 TCATGATCTAAAGACCGGGGG 58.953 52.381 6.32 0.00 0.00 5.40
3665 6091 3.324846 TCATCATGATCTAAAGACCGGGG 59.675 47.826 6.32 0.00 0.00 5.73
3666 6092 4.607293 TCATCATGATCTAAAGACCGGG 57.393 45.455 6.32 0.00 0.00 5.73
3667 6093 4.391216 GCATCATCATGATCTAAAGACCGG 59.609 45.833 4.86 0.00 34.28 5.28
3668 6094 4.992951 TGCATCATCATGATCTAAAGACCG 59.007 41.667 4.86 0.00 34.28 4.79
3669 6095 6.623114 GCATGCATCATCATGATCTAAAGACC 60.623 42.308 14.21 0.00 44.94 3.85
3670 6096 6.315551 GCATGCATCATCATGATCTAAAGAC 58.684 40.000 14.21 0.00 44.94 3.01
3671 6097 5.121768 CGCATGCATCATCATGATCTAAAGA 59.878 40.000 19.57 0.00 44.94 2.52
3672 6098 5.324697 CGCATGCATCATCATGATCTAAAG 58.675 41.667 19.57 0.00 44.94 1.85
3673 6099 4.155280 CCGCATGCATCATCATGATCTAAA 59.845 41.667 19.57 0.00 44.94 1.85
3674 6100 3.687698 CCGCATGCATCATCATGATCTAA 59.312 43.478 19.57 0.00 44.94 2.10
3675 6101 3.267483 CCGCATGCATCATCATGATCTA 58.733 45.455 19.57 0.00 44.94 1.98
3676 6102 2.084546 CCGCATGCATCATCATGATCT 58.915 47.619 19.57 0.00 44.94 2.75
3677 6103 1.467543 GCCGCATGCATCATCATGATC 60.468 52.381 19.57 0.00 44.94 2.92
3678 6104 0.526211 GCCGCATGCATCATCATGAT 59.474 50.000 19.57 1.18 44.94 2.45
3679 6105 1.520600 GGCCGCATGCATCATCATGA 61.521 55.000 19.57 0.00 44.94 3.07
3680 6106 1.080772 GGCCGCATGCATCATCATG 60.081 57.895 19.57 0.00 44.93 3.07
3681 6107 2.273179 GGGCCGCATGCATCATCAT 61.273 57.895 19.57 0.00 43.89 2.45
3682 6108 2.054473 TAGGGCCGCATGCATCATCA 62.054 55.000 19.57 0.00 43.89 3.07
3683 6109 0.679002 ATAGGGCCGCATGCATCATC 60.679 55.000 19.57 2.74 43.89 2.92
3684 6110 0.679002 GATAGGGCCGCATGCATCAT 60.679 55.000 19.57 6.41 43.89 2.45
3685 6111 1.302752 GATAGGGCCGCATGCATCA 60.303 57.895 19.57 0.00 43.89 3.07
3686 6112 2.042831 GGATAGGGCCGCATGCATC 61.043 63.158 19.57 11.45 43.89 3.91
3687 6113 2.034687 GGATAGGGCCGCATGCAT 59.965 61.111 19.57 1.49 43.89 3.96
3688 6114 2.832778 ATGGATAGGGCCGCATGCA 61.833 57.895 19.57 15.50 43.89 3.96
3689 6115 2.034687 ATGGATAGGGCCGCATGC 59.965 61.111 7.91 7.91 40.16 4.06
3690 6116 1.676635 CCATGGATAGGGCCGCATG 60.677 63.158 5.56 0.00 0.00 4.06
3691 6117 1.210204 ATCCATGGATAGGGCCGCAT 61.210 55.000 26.25 0.00 32.36 4.73
3692 6118 0.546507 TATCCATGGATAGGGCCGCA 60.547 55.000 27.46 7.86 36.17 5.69
3693 6119 0.839946 ATATCCATGGATAGGGCCGC 59.160 55.000 32.47 0.00 40.01 6.53
3694 6120 4.103153 ACATTATATCCATGGATAGGGCCG 59.897 45.833 32.47 22.73 40.01 6.13
3695 6121 5.653255 ACATTATATCCATGGATAGGGCC 57.347 43.478 32.47 0.00 40.01 5.80
3696 6122 7.380423 ACTACATTATATCCATGGATAGGGC 57.620 40.000 32.47 0.00 40.01 5.19
3736 6162 0.784778 CAGGACGCGAAACAGAACTC 59.215 55.000 15.93 0.00 0.00 3.01
3743 6169 0.160182 CACGTTACAGGACGCGAAAC 59.840 55.000 15.93 1.49 46.47 2.78
3759 6185 2.827800 AGACCTATGATGATGGCACG 57.172 50.000 0.00 0.00 0.00 5.34
3839 6265 9.682465 AGTAGTATGTATAATCGAGCCAATAGA 57.318 33.333 0.00 0.00 0.00 1.98
3846 6272 9.472361 TTTTTCCAGTAGTATGTATAATCGAGC 57.528 33.333 0.00 0.00 0.00 5.03
3876 6302 4.490743 TCGCTACATGTCTCGATTTGAAA 58.509 39.130 15.55 0.00 0.00 2.69
3877 6303 4.104696 TCGCTACATGTCTCGATTTGAA 57.895 40.909 15.55 0.00 0.00 2.69
3885 6311 5.822278 TGATTTACTCTCGCTACATGTCTC 58.178 41.667 0.00 0.00 0.00 3.36
3914 6340 5.860941 TGTGCTTCCTTTCATTGGTAAAA 57.139 34.783 0.00 0.00 0.00 1.52
3933 6359 9.722056 GCAAAGGTACTGAAGAAATTATATGTG 57.278 33.333 0.00 0.00 40.86 3.21
4017 6443 1.153289 CTCCTGACAAGGGCGATGG 60.153 63.158 0.00 0.00 44.62 3.51
4034 6460 4.459337 CACAGGCATCAATGATGATATGCT 59.541 41.667 25.77 8.89 44.53 3.79
4035 6461 4.733850 CACAGGCATCAATGATGATATGC 58.266 43.478 25.77 11.98 44.53 3.14
4036 6462 4.671766 CGCACAGGCATCAATGATGATATG 60.672 45.833 25.77 20.08 44.53 1.78
4037 6463 3.439129 CGCACAGGCATCAATGATGATAT 59.561 43.478 25.77 8.24 44.53 1.63
4038 6464 2.809696 CGCACAGGCATCAATGATGATA 59.190 45.455 25.77 0.00 44.53 2.15
4039 6465 5.882792 TCCGCACAGGCATCAATGATGAT 62.883 47.826 25.77 11.03 42.29 2.45
4040 6466 1.018910 CGCACAGGCATCAATGATGA 58.981 50.000 25.77 1.46 42.09 2.92
4041 6467 0.030235 CCGCACAGGCATCAATGATG 59.970 55.000 18.25 18.25 42.37 3.07
4042 6468 0.107066 TCCGCACAGGCATCAATGAT 60.107 50.000 0.00 0.00 41.24 2.45
4043 6469 0.322366 TTCCGCACAGGCATCAATGA 60.322 50.000 0.00 0.00 41.24 2.57
4044 6470 0.099968 CTTCCGCACAGGCATCAATG 59.900 55.000 0.00 0.00 41.24 2.82
4045 6471 0.322816 ACTTCCGCACAGGCATCAAT 60.323 50.000 0.00 0.00 41.24 2.57
4046 6472 1.073025 ACTTCCGCACAGGCATCAA 59.927 52.632 0.00 0.00 41.24 2.57
4047 6473 1.672030 CACTTCCGCACAGGCATCA 60.672 57.895 0.00 0.00 41.24 3.07
4048 6474 1.672356 ACACTTCCGCACAGGCATC 60.672 57.895 0.00 0.00 41.24 3.91
4049 6475 1.968017 CACACTTCCGCACAGGCAT 60.968 57.895 0.00 0.00 41.24 4.40
4050 6476 2.591429 CACACTTCCGCACAGGCA 60.591 61.111 0.00 0.00 41.24 4.75
4051 6477 4.030452 GCACACTTCCGCACAGGC 62.030 66.667 0.00 0.00 40.77 4.85
4052 6478 1.005037 TAGCACACTTCCGCACAGG 60.005 57.895 0.00 0.00 42.97 4.00
4053 6479 0.319900 AGTAGCACACTTCCGCACAG 60.320 55.000 0.00 0.00 31.59 3.66
4054 6480 0.105964 AAGTAGCACACTTCCGCACA 59.894 50.000 0.00 0.00 44.48 4.57
4055 6481 0.512952 CAAGTAGCACACTTCCGCAC 59.487 55.000 1.04 0.00 44.48 5.34
4056 6482 1.227999 GCAAGTAGCACACTTCCGCA 61.228 55.000 1.04 0.00 44.48 5.69
4057 6483 1.497722 GCAAGTAGCACACTTCCGC 59.502 57.895 1.04 0.46 44.48 5.54
4058 6484 0.320771 AGGCAAGTAGCACACTTCCG 60.321 55.000 1.04 0.00 44.48 4.30
4059 6485 1.160137 CAGGCAAGTAGCACACTTCC 58.840 55.000 1.04 6.29 44.48 3.46
4060 6486 0.519077 GCAGGCAAGTAGCACACTTC 59.481 55.000 1.04 0.00 44.48 3.01
4067 6493 1.297664 CAGAGATGCAGGCAAGTAGC 58.702 55.000 0.00 0.00 44.65 3.58
4068 6494 1.297664 GCAGAGATGCAGGCAAGTAG 58.702 55.000 0.00 0.00 34.41 2.57
4069 6495 0.107508 GGCAGAGATGCAGGCAAGTA 60.108 55.000 0.00 0.00 36.33 2.24
4070 6496 1.378250 GGCAGAGATGCAGGCAAGT 60.378 57.895 0.00 0.00 36.33 3.16
4071 6497 1.077644 AGGCAGAGATGCAGGCAAG 60.078 57.895 0.00 0.00 36.33 4.01
4072 6498 1.077930 GAGGCAGAGATGCAGGCAA 60.078 57.895 0.00 0.00 36.33 4.52
4073 6499 2.588439 GAGGCAGAGATGCAGGCA 59.412 61.111 0.00 0.00 36.33 4.75
4074 6500 2.203181 GGAGGCAGAGATGCAGGC 60.203 66.667 2.29 0.00 36.33 4.85
4075 6501 1.335882 TGAGGAGGCAGAGATGCAGG 61.336 60.000 2.29 0.00 36.33 4.85
4076 6502 0.105224 CTGAGGAGGCAGAGATGCAG 59.895 60.000 2.29 0.00 38.14 4.41
4077 6503 1.335882 CCTGAGGAGGCAGAGATGCA 61.336 60.000 0.00 0.00 38.14 3.96
4078 6504 1.336632 ACCTGAGGAGGCAGAGATGC 61.337 60.000 4.99 0.00 44.33 3.91
4079 6505 0.752054 GACCTGAGGAGGCAGAGATG 59.248 60.000 4.99 0.00 44.33 2.90
4080 6506 0.337773 TGACCTGAGGAGGCAGAGAT 59.662 55.000 4.99 0.00 44.33 2.75
4081 6507 0.115152 TTGACCTGAGGAGGCAGAGA 59.885 55.000 4.99 0.00 44.33 3.10
4082 6508 0.536260 CTTGACCTGAGGAGGCAGAG 59.464 60.000 4.99 0.00 44.33 3.35
4083 6509 0.906756 CCTTGACCTGAGGAGGCAGA 60.907 60.000 4.99 0.00 44.33 4.26
4084 6510 0.906756 TCCTTGACCTGAGGAGGCAG 60.907 60.000 4.99 0.00 44.33 4.85
4085 6511 1.158466 TCCTTGACCTGAGGAGGCA 59.842 57.895 4.99 0.00 44.33 4.75
4086 6512 4.136978 TCCTTGACCTGAGGAGGC 57.863 61.111 4.99 0.00 44.33 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.