Multiple sequence alignment - TraesCS2B01G139100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G139100 chr2B 100.000 5506 0 0 1 5506 105996237 105990732 0.000000e+00 10168.0
1 TraesCS2B01G139100 chr2B 83.824 952 146 8 1 947 535025225 535024277 0.000000e+00 898.0
2 TraesCS2B01G139100 chr2B 100.000 28 0 0 4335 4362 281832287 281832260 1.000000e-02 52.8
3 TraesCS2B01G139100 chr2A 93.033 2483 113 29 2498 4947 69354080 69351625 0.000000e+00 3572.0
4 TraesCS2B01G139100 chr2A 84.189 721 77 30 1797 2501 69354851 69354152 0.000000e+00 665.0
5 TraesCS2B01G139100 chr2A 94.087 389 18 4 5122 5506 69351311 69350924 2.210000e-163 586.0
6 TraesCS2B01G139100 chr2A 91.457 398 22 8 1003 1389 69355669 69355273 2.260000e-148 536.0
7 TraesCS2B01G139100 chr2A 86.000 150 12 5 4167 4316 69343710 69343570 9.550000e-33 152.0
8 TraesCS2B01G139100 chr2A 91.579 95 3 3 4944 5038 69351401 69351312 5.790000e-25 126.0
9 TraesCS2B01G139100 chr1B 93.162 2413 119 17 2528 4921 611929163 611926778 0.000000e+00 3500.0
10 TraesCS2B01G139100 chr1B 84.167 720 76 25 1797 2501 611929969 611929273 0.000000e+00 664.0
11 TraesCS2B01G139100 chr1B 88.108 370 16 13 1003 1363 611930761 611930411 1.100000e-111 414.0
12 TraesCS2B01G139100 chr1B 94.043 235 11 2 5122 5353 611926477 611926243 2.440000e-93 353.0
13 TraesCS2B01G139100 chr1B 90.789 152 14 0 5348 5499 611407190 611407341 2.600000e-48 204.0
14 TraesCS2B01G139100 chr1B 84.659 176 25 2 5141 5315 656676183 656676357 2.040000e-39 174.0
15 TraesCS2B01G139100 chr1B 83.708 178 25 4 5140 5315 656851506 656851331 1.230000e-36 165.0
16 TraesCS2B01G139100 chr1B 83.616 177 25 4 5140 5315 656673313 656673486 4.410000e-36 163.0
17 TraesCS2B01G139100 chr1B 96.667 90 2 1 5036 5124 352884955 352885044 1.240000e-31 148.0
18 TraesCS2B01G139100 chr1B 90.722 97 7 1 4944 5038 611926574 611926478 1.610000e-25 128.0
19 TraesCS2B01G139100 chr2D 94.247 1321 64 5 2498 3815 69537180 69535869 0.000000e+00 2008.0
20 TraesCS2B01G139100 chr2D 93.176 850 38 10 3986 4820 69535674 69534830 0.000000e+00 1230.0
21 TraesCS2B01G139100 chr2D 86.435 951 123 6 1 947 119980723 119979775 0.000000e+00 1037.0
22 TraesCS2B01G139100 chr2D 87.922 563 40 17 1910 2465 69537848 69537307 6.020000e-179 638.0
23 TraesCS2B01G139100 chr2D 94.247 365 17 2 1003 1363 69538753 69538389 6.230000e-154 555.0
24 TraesCS2B01G139100 chr2D 91.731 387 22 7 5122 5506 69534478 69534100 3.780000e-146 529.0
25 TraesCS2B01G139100 chr2D 87.821 156 16 3 3737 3891 69535871 69535718 4.380000e-41 180.0
26 TraesCS2B01G139100 chr2D 93.684 95 5 1 4944 5038 69534572 69534479 2.070000e-29 141.0
27 TraesCS2B01G139100 chr2D 94.340 53 3 0 4845 4897 69534830 69534778 1.270000e-11 82.4
28 TraesCS2B01G139100 chr2D 90.909 55 3 1 3906 3958 69535720 69535666 7.650000e-09 73.1
29 TraesCS2B01G139100 chr5B 89.263 950 96 5 1 947 506362839 506363785 0.000000e+00 1184.0
30 TraesCS2B01G139100 chr4A 89.076 952 96 8 1 947 684391904 684392852 0.000000e+00 1175.0
31 TraesCS2B01G139100 chr4A 81.954 604 92 14 2528 3123 222107592 222108186 3.830000e-136 496.0
32 TraesCS2B01G139100 chr4A 78.876 445 60 23 3291 3715 222108508 222108938 2.530000e-68 270.0
33 TraesCS2B01G139100 chr4A 81.915 188 32 2 5126 5312 564892875 564893061 2.050000e-34 158.0
34 TraesCS2B01G139100 chr6A 87.447 940 110 6 1 937 17598125 17599059 0.000000e+00 1075.0
35 TraesCS2B01G139100 chr6A 95.652 92 4 0 5036 5127 152028463 152028372 1.240000e-31 148.0
36 TraesCS2B01G139100 chr6A 75.510 147 29 7 2555 2698 614721997 614722139 1.280000e-06 65.8
37 TraesCS2B01G139100 chr1D 86.961 951 115 7 1 947 193433925 193432980 0.000000e+00 1061.0
38 TraesCS2B01G139100 chr1D 97.674 43 1 0 4944 4986 436855918 436855876 2.130000e-09 75.0
39 TraesCS2B01G139100 chr7B 83.088 952 153 8 1 947 444168192 444169140 0.000000e+00 859.0
40 TraesCS2B01G139100 chr7A 83.228 948 148 11 1 941 708746364 708747307 0.000000e+00 859.0
41 TraesCS2B01G139100 chr7A 96.774 93 3 0 5034 5126 98539632 98539540 7.380000e-34 156.0
42 TraesCS2B01G139100 chr3A 82.759 957 147 17 1 947 746440031 746439083 0.000000e+00 837.0
43 TraesCS2B01G139100 chr1A 82.979 188 30 2 5129 5315 566413213 566413399 9.490000e-38 169.0
44 TraesCS2B01G139100 chr1A 83.429 175 27 2 5142 5315 566416081 566416254 1.590000e-35 161.0
45 TraesCS2B01G139100 chr1A 94.118 51 2 1 4944 4994 533779227 533779178 5.910000e-10 76.8
46 TraesCS2B01G139100 chr1A 92.157 51 3 1 4944 4994 533760090 533760041 2.750000e-08 71.3
47 TraesCS2B01G139100 chr4D 94.737 95 4 1 5036 5130 112194207 112194114 4.440000e-31 147.0
48 TraesCS2B01G139100 chr3B 88.710 124 9 5 5001 5123 421670470 421670589 4.440000e-31 147.0
49 TraesCS2B01G139100 chr6D 94.681 94 3 2 5033 5124 149721753 149721660 1.600000e-30 145.0
50 TraesCS2B01G139100 chr3D 93.000 100 6 1 5031 5130 112210180 112210082 1.600000e-30 145.0
51 TraesCS2B01G139100 chr7D 93.617 94 6 0 5027 5120 622185055 622185148 2.070000e-29 141.0
52 TraesCS2B01G139100 chr7D 91.262 103 7 2 5036 5137 69956977 69957078 7.440000e-29 139.0
53 TraesCS2B01G139100 chr5D 91.304 46 4 0 4944 4989 17506456 17506411 4.600000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G139100 chr2B 105990732 105996237 5505 True 10168.000000 10168 100.000000 1 5506 1 chr2B.!!$R1 5505
1 TraesCS2B01G139100 chr2B 535024277 535025225 948 True 898.000000 898 83.824000 1 947 1 chr2B.!!$R3 946
2 TraesCS2B01G139100 chr2A 69350924 69355669 4745 True 1097.000000 3572 90.869000 1003 5506 5 chr2A.!!$R2 4503
3 TraesCS2B01G139100 chr1B 611926243 611930761 4518 True 1011.800000 3500 90.040400 1003 5353 5 chr1B.!!$R2 4350
4 TraesCS2B01G139100 chr2D 119979775 119980723 948 True 1037.000000 1037 86.435000 1 947 1 chr2D.!!$R1 946
5 TraesCS2B01G139100 chr2D 69534100 69538753 4653 True 604.055556 2008 92.008556 1003 5506 9 chr2D.!!$R2 4503
6 TraesCS2B01G139100 chr5B 506362839 506363785 946 False 1184.000000 1184 89.263000 1 947 1 chr5B.!!$F1 946
7 TraesCS2B01G139100 chr4A 684391904 684392852 948 False 1175.000000 1175 89.076000 1 947 1 chr4A.!!$F2 946
8 TraesCS2B01G139100 chr4A 222107592 222108938 1346 False 383.000000 496 80.415000 2528 3715 2 chr4A.!!$F3 1187
9 TraesCS2B01G139100 chr6A 17598125 17599059 934 False 1075.000000 1075 87.447000 1 937 1 chr6A.!!$F1 936
10 TraesCS2B01G139100 chr1D 193432980 193433925 945 True 1061.000000 1061 86.961000 1 947 1 chr1D.!!$R1 946
11 TraesCS2B01G139100 chr7B 444168192 444169140 948 False 859.000000 859 83.088000 1 947 1 chr7B.!!$F1 946
12 TraesCS2B01G139100 chr7A 708746364 708747307 943 False 859.000000 859 83.228000 1 941 1 chr7A.!!$F1 940
13 TraesCS2B01G139100 chr3A 746439083 746440031 948 True 837.000000 837 82.759000 1 947 1 chr3A.!!$R1 946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.618458 AATACCATGCCGGAGTGTGT 59.382 50.0 5.05 5.82 38.63 3.72 F
1755 1886 0.038166 TTGACTGCCTGGTTGGATCC 59.962 55.0 4.20 4.20 38.35 3.36 F
2426 2566 0.185901 AGCCCTGAAAAGGTGAGCAA 59.814 50.0 0.00 0.00 0.00 3.91 F
4011 4501 0.250038 TTCTGTCACAGAGCACCTGC 60.250 55.0 7.75 0.00 46.81 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1915 0.036732 CTCCCACAACAAGCTGCCTA 59.963 55.0 0.00 0.0 0.00 3.93 R
3420 3824 0.397941 TGGCAAGTGCACTCTTAGCT 59.602 50.0 21.95 0.0 44.36 3.32 R
4229 4720 1.603236 CGTCCTCTTCAGCTGCCTCT 61.603 60.0 9.47 0.0 0.00 3.69 R
5391 6179 2.237143 TCAACCTCTGGCTGATTGGTAG 59.763 50.0 5.87 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.618458 AATACCATGCCGGAGTGTGT 59.382 50.000 5.05 5.82 38.63 3.72
48 49 1.539496 GCCGGAGTGTGTTAGTGAACA 60.539 52.381 5.05 0.00 43.41 3.18
95 96 3.125316 GTCCATTTTGTACAGAAGGAGCG 59.875 47.826 11.91 0.00 0.00 5.03
98 99 3.695830 TTTTGTACAGAAGGAGCGGAT 57.304 42.857 0.00 0.00 0.00 4.18
200 201 1.084370 CCTGTCAAACGGATCGAGCC 61.084 60.000 10.41 10.41 0.00 4.70
284 287 4.202121 TGCTTGAGTTACCGGAGCTTATAG 60.202 45.833 9.46 0.00 34.56 1.31
330 333 1.013596 CAACGGAGACAGTTTGTGCA 58.986 50.000 0.00 0.00 0.00 4.57
542 546 4.202161 GGTCATCCGTGATCACTGTAGAAT 60.202 45.833 22.95 4.06 35.47 2.40
552 556 7.148590 CGTGATCACTGTAGAATTTTCATGTCA 60.149 37.037 22.95 0.00 0.00 3.58
650 654 2.818132 GAGGGAGACAGGATGCCG 59.182 66.667 0.00 0.00 42.53 5.69
680 684 9.475620 TGTGGTAGTAAGATCGGATAATATCAT 57.524 33.333 2.41 0.00 0.00 2.45
682 686 9.695155 TGGTAGTAAGATCGGATAATATCATGA 57.305 33.333 0.00 0.00 0.00 3.07
896 904 6.095377 GCCTGATTTCATTGTAAACCTTCTG 58.905 40.000 0.00 0.00 0.00 3.02
972 982 4.513198 TTTTTACAAAGGCTGATTCCCG 57.487 40.909 0.00 0.00 0.00 5.14
973 983 3.426787 TTTACAAAGGCTGATTCCCGA 57.573 42.857 0.00 0.00 0.00 5.14
974 984 3.426787 TTACAAAGGCTGATTCCCGAA 57.573 42.857 0.00 0.00 0.00 4.30
975 985 2.286365 ACAAAGGCTGATTCCCGAAA 57.714 45.000 0.00 0.00 0.00 3.46
976 986 2.593026 ACAAAGGCTGATTCCCGAAAA 58.407 42.857 0.00 0.00 0.00 2.29
977 987 2.962421 ACAAAGGCTGATTCCCGAAAAA 59.038 40.909 0.00 0.00 0.00 1.94
1000 1010 6.976934 AAAAAGGCTCTGATTGGTTTAAGA 57.023 33.333 0.00 0.00 0.00 2.10
1001 1011 7.544804 AAAAAGGCTCTGATTGGTTTAAGAT 57.455 32.000 0.00 0.00 0.00 2.40
1020 1030 1.382629 GAGCCCTAAAACCCTGGCA 59.617 57.895 1.86 0.00 46.45 4.92
1026 1036 1.005450 CCTAAAACCCTGGCAGCCTTA 59.995 52.381 14.15 0.46 0.00 2.69
1070 1080 0.618968 GCCTCCTTTCCTCTCCTCCA 60.619 60.000 0.00 0.00 0.00 3.86
1248 1271 2.177580 CGTTCGTGCTGTGGTTGGT 61.178 57.895 0.00 0.00 0.00 3.67
1344 1370 2.172483 GACGAGGGGAAGCTCAGCAA 62.172 60.000 0.00 0.00 0.00 3.91
1345 1371 1.003355 CGAGGGGAAGCTCAGCAAA 60.003 57.895 0.00 0.00 0.00 3.68
1363 1389 0.831307 AAGTCGAGGTATTGGCTCCC 59.169 55.000 0.00 0.00 0.00 4.30
1369 1395 1.300697 GGTATTGGCTCCCGCTACG 60.301 63.158 0.00 0.00 36.09 3.51
1370 1396 1.954651 GTATTGGCTCCCGCTACGC 60.955 63.158 0.00 0.00 36.09 4.42
1378 1404 3.148279 CCCGCTACGCCCTTCTCT 61.148 66.667 0.00 0.00 0.00 3.10
1381 1407 2.413765 GCTACGCCCTTCTCTCCG 59.586 66.667 0.00 0.00 0.00 4.63
1389 1415 2.050350 CCTTCTCTCCGCCGGTGTA 61.050 63.158 15.14 0.00 0.00 2.90
1393 1419 0.968901 TCTCTCCGCCGGTGTATGTT 60.969 55.000 15.14 0.00 0.00 2.71
1394 1420 0.108329 CTCTCCGCCGGTGTATGTTT 60.108 55.000 15.14 0.00 0.00 2.83
1401 1447 1.448985 CCGGTGTATGTTTGAGGTGG 58.551 55.000 0.00 0.00 0.00 4.61
1404 1450 2.482721 CGGTGTATGTTTGAGGTGGTTC 59.517 50.000 0.00 0.00 0.00 3.62
1405 1451 2.482721 GGTGTATGTTTGAGGTGGTTCG 59.517 50.000 0.00 0.00 0.00 3.95
1409 1455 4.641094 TGTATGTTTGAGGTGGTTCGTTTT 59.359 37.500 0.00 0.00 0.00 2.43
1411 1457 3.839293 TGTTTGAGGTGGTTCGTTTTTG 58.161 40.909 0.00 0.00 0.00 2.44
1412 1458 3.183754 GTTTGAGGTGGTTCGTTTTTGG 58.816 45.455 0.00 0.00 0.00 3.28
1413 1459 2.131776 TGAGGTGGTTCGTTTTTGGT 57.868 45.000 0.00 0.00 0.00 3.67
1414 1460 2.018515 TGAGGTGGTTCGTTTTTGGTC 58.981 47.619 0.00 0.00 0.00 4.02
1418 1464 2.164827 GGTGGTTCGTTTTTGGTCTGTT 59.835 45.455 0.00 0.00 0.00 3.16
1420 1466 2.164624 TGGTTCGTTTTTGGTCTGTTGG 59.835 45.455 0.00 0.00 0.00 3.77
1427 1473 4.261405 CGTTTTTGGTCTGTTGGCTAATGA 60.261 41.667 0.00 0.00 0.00 2.57
1430 1476 5.643379 TTTGGTCTGTTGGCTAATGATTC 57.357 39.130 0.00 0.00 0.00 2.52
1432 1478 3.266772 TGGTCTGTTGGCTAATGATTCCT 59.733 43.478 0.00 0.00 0.00 3.36
1435 1481 4.702131 GTCTGTTGGCTAATGATTCCTGTT 59.298 41.667 0.00 0.00 0.00 3.16
1436 1482 5.183904 GTCTGTTGGCTAATGATTCCTGTTT 59.816 40.000 0.00 0.00 0.00 2.83
1463 1509 2.113860 TGCTGTTTAGGATCTGTGGC 57.886 50.000 0.00 0.00 0.00 5.01
1471 1517 0.908198 AGGATCTGTGGCAGGACTTC 59.092 55.000 0.00 0.00 31.51 3.01
1499 1545 1.946768 CGGACAAAGCAAGAAAGGTGA 59.053 47.619 0.00 0.00 0.00 4.02
1500 1546 2.357637 CGGACAAAGCAAGAAAGGTGAA 59.642 45.455 0.00 0.00 0.00 3.18
1502 1548 4.112634 GGACAAAGCAAGAAAGGTGAAAC 58.887 43.478 0.00 0.00 0.00 2.78
1508 1554 3.058914 AGCAAGAAAGGTGAAACGATTCG 60.059 43.478 4.14 4.14 37.23 3.34
1509 1555 3.059188 GCAAGAAAGGTGAAACGATTCGA 60.059 43.478 13.95 0.00 37.23 3.71
1510 1556 4.553938 GCAAGAAAGGTGAAACGATTCGAA 60.554 41.667 13.95 0.00 37.23 3.71
1511 1557 4.727235 AGAAAGGTGAAACGATTCGAAC 57.273 40.909 13.95 5.39 37.23 3.95
1519 1567 3.739300 TGAAACGATTCGAACCTCTGTTC 59.261 43.478 13.95 2.64 46.05 3.18
1532 1580 5.931441 ACCTCTGTTCTTGATTTTTCTCG 57.069 39.130 0.00 0.00 0.00 4.04
1536 1584 5.364778 TCTGTTCTTGATTTTTCTCGTGGA 58.635 37.500 0.00 0.00 0.00 4.02
1543 1591 5.356882 TGATTTTTCTCGTGGATGTTGTC 57.643 39.130 0.00 0.00 0.00 3.18
1544 1592 4.819088 TGATTTTTCTCGTGGATGTTGTCA 59.181 37.500 0.00 0.00 0.00 3.58
1545 1593 4.811555 TTTTTCTCGTGGATGTTGTCAG 57.188 40.909 0.00 0.00 0.00 3.51
1551 1599 1.069703 CGTGGATGTTGTCAGTTGCTG 60.070 52.381 0.00 0.00 0.00 4.41
1553 1601 3.138304 GTGGATGTTGTCAGTTGCTGTA 58.862 45.455 0.00 0.00 32.61 2.74
1555 1603 4.036262 GTGGATGTTGTCAGTTGCTGTAAA 59.964 41.667 0.00 0.00 32.61 2.01
1556 1604 4.275689 TGGATGTTGTCAGTTGCTGTAAAG 59.724 41.667 0.00 0.00 32.61 1.85
1557 1605 3.691049 TGTTGTCAGTTGCTGTAAAGC 57.309 42.857 0.00 0.00 32.61 3.51
1558 1606 3.278574 TGTTGTCAGTTGCTGTAAAGCT 58.721 40.909 6.43 0.00 35.49 3.74
1559 1607 3.065233 TGTTGTCAGTTGCTGTAAAGCTG 59.935 43.478 6.43 0.00 35.49 4.24
1560 1608 2.917933 TGTCAGTTGCTGTAAAGCTGT 58.082 42.857 6.43 0.00 35.49 4.40
1561 1609 2.613595 TGTCAGTTGCTGTAAAGCTGTG 59.386 45.455 6.43 1.12 35.49 3.66
1562 1610 2.872245 GTCAGTTGCTGTAAAGCTGTGA 59.128 45.455 6.43 3.57 35.49 3.58
1563 1611 3.499918 GTCAGTTGCTGTAAAGCTGTGAT 59.500 43.478 6.43 0.00 35.49 3.06
1564 1612 4.023707 GTCAGTTGCTGTAAAGCTGTGATT 60.024 41.667 6.43 0.00 35.49 2.57
1567 1615 5.750067 CAGTTGCTGTAAAGCTGTGATTTTT 59.250 36.000 6.43 0.00 35.49 1.94
1568 1616 6.917477 CAGTTGCTGTAAAGCTGTGATTTTTA 59.083 34.615 6.43 0.00 35.49 1.52
1569 1617 7.596248 CAGTTGCTGTAAAGCTGTGATTTTTAT 59.404 33.333 6.43 0.00 35.49 1.40
1571 1699 6.389091 TGCTGTAAAGCTGTGATTTTTATGG 58.611 36.000 6.43 0.00 35.49 2.74
1575 1703 9.906660 CTGTAAAGCTGTGATTTTTATGGTTAA 57.093 29.630 0.00 0.00 0.00 2.01
1581 1712 6.980397 GCTGTGATTTTTATGGTTAATCTGGG 59.020 38.462 0.00 0.00 31.25 4.45
1583 1714 8.062065 TGTGATTTTTATGGTTAATCTGGGAC 57.938 34.615 0.00 0.00 31.25 4.46
1588 1719 1.367346 TGGTTAATCTGGGACCTGCA 58.633 50.000 0.00 0.00 34.52 4.41
1590 1721 3.119319 TGGTTAATCTGGGACCTGCATA 58.881 45.455 0.00 0.00 34.52 3.14
1591 1722 3.118038 TGGTTAATCTGGGACCTGCATAC 60.118 47.826 0.00 0.00 34.52 2.39
1593 1724 2.717639 AATCTGGGACCTGCATACAC 57.282 50.000 0.00 0.00 0.00 2.90
1594 1725 0.839946 ATCTGGGACCTGCATACACC 59.160 55.000 0.00 0.00 0.00 4.16
1595 1726 0.252696 TCTGGGACCTGCATACACCT 60.253 55.000 0.00 0.00 0.00 4.00
1602 1733 3.197983 GGACCTGCATACACCTAGTTTCT 59.802 47.826 0.00 0.00 0.00 2.52
1604 1735 5.340439 ACCTGCATACACCTAGTTTCTAC 57.660 43.478 0.00 0.00 0.00 2.59
1608 1739 5.730550 TGCATACACCTAGTTTCTACCTTG 58.269 41.667 0.00 0.00 0.00 3.61
1609 1740 5.247564 TGCATACACCTAGTTTCTACCTTGT 59.752 40.000 0.00 0.00 0.00 3.16
1612 1743 5.725325 ACACCTAGTTTCTACCTTGTCTC 57.275 43.478 0.00 0.00 0.00 3.36
1616 1747 4.220163 CCTAGTTTCTACCTTGTCTCGGTT 59.780 45.833 0.00 0.00 35.98 4.44
1618 1749 3.640029 AGTTTCTACCTTGTCTCGGTTCA 59.360 43.478 0.00 0.00 35.98 3.18
1619 1750 3.936372 TTCTACCTTGTCTCGGTTCAG 57.064 47.619 0.00 0.00 35.98 3.02
1622 1753 0.969894 ACCTTGTCTCGGTTCAGAGG 59.030 55.000 0.77 0.00 38.71 3.69
1624 1755 1.067495 CCTTGTCTCGGTTCAGAGGTC 60.067 57.143 0.77 0.00 38.71 3.85
1625 1756 1.613925 CTTGTCTCGGTTCAGAGGTCA 59.386 52.381 0.77 0.00 38.71 4.02
1626 1757 0.959553 TGTCTCGGTTCAGAGGTCAC 59.040 55.000 0.77 0.00 38.71 3.67
1627 1758 0.244178 GTCTCGGTTCAGAGGTCACC 59.756 60.000 0.00 0.00 38.71 4.02
1630 1761 2.047179 GGTTCAGAGGTCACCGCC 60.047 66.667 0.00 0.00 0.00 6.13
1631 1762 2.741092 GTTCAGAGGTCACCGCCA 59.259 61.111 0.00 0.00 0.00 5.69
1632 1763 1.296715 GTTCAGAGGTCACCGCCAT 59.703 57.895 0.00 0.00 0.00 4.40
1633 1764 1.021390 GTTCAGAGGTCACCGCCATG 61.021 60.000 0.00 0.00 0.00 3.66
1634 1765 1.480212 TTCAGAGGTCACCGCCATGT 61.480 55.000 0.00 0.00 0.00 3.21
1635 1766 1.448540 CAGAGGTCACCGCCATGTC 60.449 63.158 0.00 0.00 0.00 3.06
1636 1767 1.610673 AGAGGTCACCGCCATGTCT 60.611 57.895 0.00 0.00 0.00 3.41
1637 1768 1.194781 AGAGGTCACCGCCATGTCTT 61.195 55.000 0.00 0.00 0.00 3.01
1638 1769 0.741221 GAGGTCACCGCCATGTCTTC 60.741 60.000 0.00 0.00 0.00 2.87
1639 1770 1.194781 AGGTCACCGCCATGTCTTCT 61.195 55.000 0.00 0.00 0.00 2.85
1640 1771 1.021390 GGTCACCGCCATGTCTTCTG 61.021 60.000 0.00 0.00 0.00 3.02
1641 1772 0.320771 GTCACCGCCATGTCTTCTGT 60.321 55.000 0.00 0.00 0.00 3.41
1642 1773 0.396435 TCACCGCCATGTCTTCTGTT 59.604 50.000 0.00 0.00 0.00 3.16
1643 1774 1.202758 TCACCGCCATGTCTTCTGTTT 60.203 47.619 0.00 0.00 0.00 2.83
1644 1775 1.608590 CACCGCCATGTCTTCTGTTTT 59.391 47.619 0.00 0.00 0.00 2.43
1645 1776 2.034558 CACCGCCATGTCTTCTGTTTTT 59.965 45.455 0.00 0.00 0.00 1.94
1646 1777 2.034558 ACCGCCATGTCTTCTGTTTTTG 59.965 45.455 0.00 0.00 0.00 2.44
1647 1778 2.293122 CCGCCATGTCTTCTGTTTTTGA 59.707 45.455 0.00 0.00 0.00 2.69
1648 1779 3.243367 CCGCCATGTCTTCTGTTTTTGAA 60.243 43.478 0.00 0.00 0.00 2.69
1649 1780 4.549458 CGCCATGTCTTCTGTTTTTGAAT 58.451 39.130 0.00 0.00 0.00 2.57
1650 1781 4.383649 CGCCATGTCTTCTGTTTTTGAATG 59.616 41.667 0.00 0.00 0.00 2.67
1651 1782 5.291971 GCCATGTCTTCTGTTTTTGAATGT 58.708 37.500 0.00 0.00 0.00 2.71
1652 1783 5.754890 GCCATGTCTTCTGTTTTTGAATGTT 59.245 36.000 0.00 0.00 0.00 2.71
1653 1784 6.922957 GCCATGTCTTCTGTTTTTGAATGTTA 59.077 34.615 0.00 0.00 0.00 2.41
1654 1785 7.115378 GCCATGTCTTCTGTTTTTGAATGTTAG 59.885 37.037 0.00 0.00 0.00 2.34
1655 1786 7.115378 CCATGTCTTCTGTTTTTGAATGTTAGC 59.885 37.037 0.00 0.00 0.00 3.09
1656 1787 6.198687 TGTCTTCTGTTTTTGAATGTTAGCG 58.801 36.000 0.00 0.00 0.00 4.26
1657 1788 5.625311 GTCTTCTGTTTTTGAATGTTAGCGG 59.375 40.000 0.00 0.00 0.00 5.52
1658 1789 5.298276 TCTTCTGTTTTTGAATGTTAGCGGT 59.702 36.000 0.00 0.00 0.00 5.68
1659 1790 5.508200 TCTGTTTTTGAATGTTAGCGGTT 57.492 34.783 0.00 0.00 0.00 4.44
1660 1791 5.516090 TCTGTTTTTGAATGTTAGCGGTTC 58.484 37.500 0.00 0.00 0.00 3.62
1661 1792 5.066634 TCTGTTTTTGAATGTTAGCGGTTCA 59.933 36.000 0.00 0.00 0.00 3.18
1662 1793 5.277825 TGTTTTTGAATGTTAGCGGTTCAG 58.722 37.500 0.00 0.00 33.82 3.02
1663 1794 4.497473 TTTTGAATGTTAGCGGTTCAGG 57.503 40.909 0.00 0.00 33.82 3.86
1664 1795 2.851263 TGAATGTTAGCGGTTCAGGT 57.149 45.000 0.00 0.00 0.00 4.00
1665 1796 3.134574 TGAATGTTAGCGGTTCAGGTT 57.865 42.857 0.00 0.00 0.00 3.50
1666 1797 3.071479 TGAATGTTAGCGGTTCAGGTTC 58.929 45.455 0.00 0.00 0.00 3.62
1667 1798 2.851263 ATGTTAGCGGTTCAGGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
1668 1799 2.623878 TGTTAGCGGTTCAGGTTCAA 57.376 45.000 0.00 0.00 0.00 2.69
1669 1800 2.215196 TGTTAGCGGTTCAGGTTCAAC 58.785 47.619 0.00 0.00 0.00 3.18
1670 1801 1.193874 GTTAGCGGTTCAGGTTCAACG 59.806 52.381 0.00 0.00 0.00 4.10
1671 1802 0.675083 TAGCGGTTCAGGTTCAACGA 59.325 50.000 0.00 0.00 0.00 3.85
1672 1803 0.600255 AGCGGTTCAGGTTCAACGAG 60.600 55.000 0.00 0.00 0.00 4.18
1673 1804 1.566018 GCGGTTCAGGTTCAACGAGG 61.566 60.000 0.00 0.00 0.00 4.63
1674 1805 0.949105 CGGTTCAGGTTCAACGAGGG 60.949 60.000 0.00 0.00 0.00 4.30
1675 1806 0.395312 GGTTCAGGTTCAACGAGGGA 59.605 55.000 0.00 0.00 0.00 4.20
1676 1807 1.509703 GTTCAGGTTCAACGAGGGAC 58.490 55.000 0.00 0.00 0.00 4.46
1678 1809 1.420430 TCAGGTTCAACGAGGGACTT 58.580 50.000 0.00 0.00 41.55 3.01
1679 1810 2.600790 TCAGGTTCAACGAGGGACTTA 58.399 47.619 0.00 0.00 41.55 2.24
1680 1811 3.170717 TCAGGTTCAACGAGGGACTTAT 58.829 45.455 0.00 0.00 41.55 1.73
1681 1812 3.056107 TCAGGTTCAACGAGGGACTTATG 60.056 47.826 0.00 0.00 41.55 1.90
1682 1813 2.007608 GGTTCAACGAGGGACTTATGC 58.992 52.381 0.00 0.00 41.55 3.14
1683 1814 2.354805 GGTTCAACGAGGGACTTATGCT 60.355 50.000 0.00 0.00 41.55 3.79
1686 1817 1.398390 CAACGAGGGACTTATGCTTGC 59.602 52.381 0.00 0.00 41.55 4.01
1689 1820 1.667724 CGAGGGACTTATGCTTGCAAG 59.332 52.381 22.44 22.44 41.55 4.01
1693 1824 4.662278 AGGGACTTATGCTTGCAAGTTAA 58.338 39.130 26.55 21.18 35.17 2.01
1695 1826 5.716703 AGGGACTTATGCTTGCAAGTTAATT 59.283 36.000 26.55 17.61 35.17 1.40
1722 1853 7.778470 TTTCCACATGGATTGTTACAAAAAC 57.222 32.000 0.66 0.00 44.98 2.43
1723 1854 6.471233 TCCACATGGATTGTTACAAAAACA 57.529 33.333 0.66 2.18 39.78 2.83
1725 1856 7.504403 TCCACATGGATTGTTACAAAAACATT 58.496 30.769 0.66 0.00 39.78 2.71
1726 1857 7.989741 TCCACATGGATTGTTACAAAAACATTT 59.010 29.630 0.66 0.00 39.78 2.32
1752 1883 3.780294 AGTATATTGACTGCCTGGTTGGA 59.220 43.478 0.00 0.00 38.35 3.53
1753 1884 3.959495 ATATTGACTGCCTGGTTGGAT 57.041 42.857 0.00 0.00 38.35 3.41
1754 1885 2.134789 ATTGACTGCCTGGTTGGATC 57.865 50.000 0.00 0.00 38.35 3.36
1755 1886 0.038166 TTGACTGCCTGGTTGGATCC 59.962 55.000 4.20 4.20 38.35 3.36
1756 1887 1.133181 TGACTGCCTGGTTGGATCCA 61.133 55.000 11.44 11.44 38.35 3.41
1757 1888 0.678048 GACTGCCTGGTTGGATCCAC 60.678 60.000 15.91 9.83 38.35 4.02
1759 1890 0.679002 CTGCCTGGTTGGATCCACTG 60.679 60.000 15.91 8.08 38.35 3.66
1760 1891 1.380302 GCCTGGTTGGATCCACTGT 59.620 57.895 15.91 0.00 38.35 3.55
1761 1892 0.678048 GCCTGGTTGGATCCACTGTC 60.678 60.000 15.91 5.43 38.35 3.51
1763 1894 0.391661 CTGGTTGGATCCACTGTCGG 60.392 60.000 15.91 5.64 33.55 4.79
1765 1896 0.323629 GGTTGGATCCACTGTCGGAA 59.676 55.000 15.91 0.00 38.95 4.30
1767 1898 1.275291 GTTGGATCCACTGTCGGAAGA 59.725 52.381 15.91 0.00 38.95 2.87
1769 1900 2.187958 TGGATCCACTGTCGGAAGATT 58.812 47.619 11.44 0.00 45.19 2.40
1770 1901 2.571653 TGGATCCACTGTCGGAAGATTT 59.428 45.455 11.44 0.00 45.19 2.17
1771 1902 3.009033 TGGATCCACTGTCGGAAGATTTT 59.991 43.478 11.44 0.00 45.19 1.82
1772 1903 4.010349 GGATCCACTGTCGGAAGATTTTT 58.990 43.478 6.95 0.00 45.19 1.94
1773 1904 5.183228 GGATCCACTGTCGGAAGATTTTTA 58.817 41.667 6.95 0.00 45.19 1.52
1774 1905 5.823045 GGATCCACTGTCGGAAGATTTTTAT 59.177 40.000 6.95 0.00 45.19 1.40
1775 1906 6.017852 GGATCCACTGTCGGAAGATTTTTATC 60.018 42.308 6.95 0.00 45.19 1.75
1776 1907 6.049955 TCCACTGTCGGAAGATTTTTATCT 57.950 37.500 0.00 0.00 45.19 1.98
1777 1908 7.177832 TCCACTGTCGGAAGATTTTTATCTA 57.822 36.000 0.00 0.00 45.19 1.98
1778 1909 7.265673 TCCACTGTCGGAAGATTTTTATCTAG 58.734 38.462 0.00 0.00 45.19 2.43
1779 1910 6.018669 CCACTGTCGGAAGATTTTTATCTAGC 60.019 42.308 0.00 0.00 45.19 3.42
1780 1911 6.018669 CACTGTCGGAAGATTTTTATCTAGCC 60.019 42.308 0.00 0.00 45.19 3.93
1781 1912 5.984725 TGTCGGAAGATTTTTATCTAGCCA 58.015 37.500 0.00 0.00 45.19 4.75
1782 1913 6.411376 TGTCGGAAGATTTTTATCTAGCCAA 58.589 36.000 0.00 0.00 45.19 4.52
1783 1914 7.054124 TGTCGGAAGATTTTTATCTAGCCAAT 58.946 34.615 0.00 0.00 45.19 3.16
1784 1915 7.556275 TGTCGGAAGATTTTTATCTAGCCAATT 59.444 33.333 0.00 0.00 45.19 2.32
1785 1916 9.052759 GTCGGAAGATTTTTATCTAGCCAATTA 57.947 33.333 0.00 0.00 45.19 1.40
1786 1917 9.273016 TCGGAAGATTTTTATCTAGCCAATTAG 57.727 33.333 0.00 0.00 33.31 1.73
1787 1918 8.507249 CGGAAGATTTTTATCTAGCCAATTAGG 58.493 37.037 0.00 0.00 41.84 2.69
1800 1931 2.353011 CCAATTAGGCAGCTTGTTGTGG 60.353 50.000 0.00 0.00 0.00 4.17
1821 1952 1.073284 GAGGCTTAGTTTGTGGGTCCA 59.927 52.381 0.00 0.00 0.00 4.02
1823 1954 2.916934 AGGCTTAGTTTGTGGGTCCATA 59.083 45.455 0.00 0.00 0.00 2.74
1824 1955 3.527665 AGGCTTAGTTTGTGGGTCCATAT 59.472 43.478 0.00 0.00 0.00 1.78
1825 1956 3.883489 GGCTTAGTTTGTGGGTCCATATC 59.117 47.826 0.00 0.00 0.00 1.63
1826 1957 3.883489 GCTTAGTTTGTGGGTCCATATCC 59.117 47.826 0.00 0.00 0.00 2.59
1828 1959 5.505780 CTTAGTTTGTGGGTCCATATCCAA 58.494 41.667 0.00 0.00 37.74 3.53
1829 1960 4.608170 AGTTTGTGGGTCCATATCCAAT 57.392 40.909 0.00 0.00 37.74 3.16
1830 1961 5.725551 AGTTTGTGGGTCCATATCCAATA 57.274 39.130 0.00 0.00 37.74 1.90
1831 1962 6.086011 AGTTTGTGGGTCCATATCCAATAA 57.914 37.500 0.00 0.00 37.74 1.40
1834 1965 8.285891 AGTTTGTGGGTCCATATCCAATAATAA 58.714 33.333 0.00 0.00 37.74 1.40
1838 1970 9.087871 TGTGGGTCCATATCCAATAATAATTTG 57.912 33.333 0.00 0.00 37.74 2.32
1855 1988 8.767478 AATAATTTGGAATGCTTTCTGTTGAG 57.233 30.769 11.68 0.00 32.16 3.02
1858 1991 2.886523 TGGAATGCTTTCTGTTGAGTGG 59.113 45.455 11.68 0.00 32.16 4.00
1862 1995 1.251251 GCTTTCTGTTGAGTGGCCAT 58.749 50.000 9.72 0.00 0.00 4.40
1863 1996 1.068055 GCTTTCTGTTGAGTGGCCATG 60.068 52.381 9.72 0.00 0.00 3.66
1866 1999 1.679977 CTGTTGAGTGGCCATGGGG 60.680 63.158 9.72 0.00 37.18 4.96
1876 2009 3.291611 CCATGGGGCTTGCTGTTC 58.708 61.111 2.85 0.00 0.00 3.18
1877 2010 2.703798 CCATGGGGCTTGCTGTTCG 61.704 63.158 2.85 0.00 0.00 3.95
1881 2014 2.669569 GGGCTTGCTGTTCGCTGA 60.670 61.111 0.00 0.00 40.11 4.26
1882 2015 2.684843 GGGCTTGCTGTTCGCTGAG 61.685 63.158 0.00 0.00 40.11 3.35
1884 2017 1.023513 GGCTTGCTGTTCGCTGAGAT 61.024 55.000 0.00 0.00 40.11 2.75
1885 2018 0.373024 GCTTGCTGTTCGCTGAGATC 59.627 55.000 0.00 0.00 40.11 2.75
1886 2019 2.006056 GCTTGCTGTTCGCTGAGATCT 61.006 52.381 0.00 0.00 40.11 2.75
1888 2021 3.515630 CTTGCTGTTCGCTGAGATCTTA 58.484 45.455 0.00 0.00 40.11 2.10
1890 2023 2.197577 GCTGTTCGCTGAGATCTTACC 58.802 52.381 0.00 0.00 35.14 2.85
1892 2025 3.066900 GCTGTTCGCTGAGATCTTACCTA 59.933 47.826 0.00 0.00 35.14 3.08
1893 2026 4.261825 GCTGTTCGCTGAGATCTTACCTAT 60.262 45.833 0.00 0.00 35.14 2.57
1895 2028 4.038042 TGTTCGCTGAGATCTTACCTATGG 59.962 45.833 0.00 0.00 0.00 2.74
1896 2029 2.558795 TCGCTGAGATCTTACCTATGGC 59.441 50.000 0.00 0.00 0.00 4.40
1898 2031 3.613671 CGCTGAGATCTTACCTATGGCTG 60.614 52.174 0.00 0.00 0.00 4.85
1899 2032 3.323403 GCTGAGATCTTACCTATGGCTGT 59.677 47.826 0.00 0.00 0.00 4.40
1900 2033 4.524714 GCTGAGATCTTACCTATGGCTGTA 59.475 45.833 0.00 0.00 0.00 2.74
1901 2034 5.336372 GCTGAGATCTTACCTATGGCTGTAG 60.336 48.000 0.00 0.00 0.00 2.74
1902 2035 5.080337 TGAGATCTTACCTATGGCTGTAGG 58.920 45.833 12.92 12.92 45.54 3.18
1903 2036 4.421131 AGATCTTACCTATGGCTGTAGGG 58.579 47.826 17.07 4.17 44.56 3.53
1904 2037 3.700863 TCTTACCTATGGCTGTAGGGT 57.299 47.619 17.07 6.93 44.56 4.34
1919 2054 4.457466 TGTAGGGTTGGTTCTCTTTGTTC 58.543 43.478 0.00 0.00 0.00 3.18
1920 2055 2.945456 AGGGTTGGTTCTCTTTGTTCC 58.055 47.619 0.00 0.00 0.00 3.62
1924 2059 4.207955 GGTTGGTTCTCTTTGTTCCTTCT 58.792 43.478 0.00 0.00 0.00 2.85
1952 2089 6.668541 AAGGATGTTATCTGTTCGTTGATG 57.331 37.500 0.00 0.00 0.00 3.07
1974 2111 7.498900 TGATGATAACTAACTTGCTGTAATGGG 59.501 37.037 0.00 0.00 0.00 4.00
1975 2112 6.717289 TGATAACTAACTTGCTGTAATGGGT 58.283 36.000 0.00 0.00 0.00 4.51
2028 2165 5.066968 TCAACAAGTTTGAAAACACCTCC 57.933 39.130 8.53 0.00 41.30 4.30
2151 2288 4.400567 GCTGATTCTAAACTTGGGAATGCT 59.599 41.667 0.00 0.00 30.98 3.79
2170 2307 7.362920 GGAATGCTATCAAAGAAAAGCTGGTTA 60.363 37.037 0.00 0.00 35.95 2.85
2192 2329 1.722034 TTGGAGACTCAGCTGTTCCT 58.278 50.000 14.67 8.81 0.00 3.36
2201 2338 3.181451 ACTCAGCTGTTCCTTTCACATGA 60.181 43.478 14.67 0.00 0.00 3.07
2210 2347 5.827267 TGTTCCTTTCACATGAGTTGATCAA 59.173 36.000 3.38 3.38 42.53 2.57
2213 2350 7.615582 TCCTTTCACATGAGTTGATCAATAC 57.384 36.000 12.12 9.36 42.53 1.89
2216 2353 8.824781 CCTTTCACATGAGTTGATCAATACTAG 58.175 37.037 12.12 5.15 42.53 2.57
2222 2362 9.973450 ACATGAGTTGATCAATACTAGTGTATC 57.027 33.333 12.12 0.50 42.53 2.24
2224 2364 9.973450 ATGAGTTGATCAATACTAGTGTATCAC 57.027 33.333 12.12 2.25 42.53 3.06
2225 2365 9.190317 TGAGTTGATCAATACTAGTGTATCACT 57.810 33.333 12.12 7.54 40.67 3.41
2226 2366 9.457110 GAGTTGATCAATACTAGTGTATCACTG 57.543 37.037 12.12 0.00 45.01 3.66
2227 2367 9.190317 AGTTGATCAATACTAGTGTATCACTGA 57.810 33.333 12.12 0.00 45.01 3.41
2228 2368 9.239002 GTTGATCAATACTAGTGTATCACTGAC 57.761 37.037 12.12 0.00 45.01 3.51
2229 2369 7.941919 TGATCAATACTAGTGTATCACTGACC 58.058 38.462 5.39 0.00 45.01 4.02
2230 2370 7.559897 TGATCAATACTAGTGTATCACTGACCA 59.440 37.037 5.39 0.00 45.01 4.02
2231 2371 7.096884 TCAATACTAGTGTATCACTGACCAC 57.903 40.000 5.39 3.47 45.01 4.16
2232 2372 6.096423 TCAATACTAGTGTATCACTGACCACC 59.904 42.308 5.39 0.00 45.01 4.61
2233 2373 3.774734 ACTAGTGTATCACTGACCACCA 58.225 45.455 11.92 0.00 45.01 4.17
2234 2374 4.353777 ACTAGTGTATCACTGACCACCAT 58.646 43.478 11.92 0.00 45.01 3.55
2235 2375 3.616956 AGTGTATCACTGACCACCATG 57.383 47.619 1.44 0.00 43.63 3.66
2236 2376 3.173151 AGTGTATCACTGACCACCATGA 58.827 45.455 0.00 0.00 43.63 3.07
2237 2377 3.776969 AGTGTATCACTGACCACCATGAT 59.223 43.478 0.00 0.00 43.63 2.45
2238 2378 4.962362 AGTGTATCACTGACCACCATGATA 59.038 41.667 0.00 0.00 43.63 2.15
2239 2379 5.604231 AGTGTATCACTGACCACCATGATAT 59.396 40.000 0.00 0.00 43.63 1.63
2240 2380 6.100279 AGTGTATCACTGACCACCATGATATT 59.900 38.462 0.00 0.00 43.63 1.28
2241 2381 6.767902 GTGTATCACTGACCACCATGATATTT 59.232 38.462 0.00 0.00 33.84 1.40
2242 2382 7.283127 GTGTATCACTGACCACCATGATATTTT 59.717 37.037 0.00 0.00 33.84 1.82
2243 2383 6.704289 ATCACTGACCACCATGATATTTTG 57.296 37.500 0.00 0.00 30.01 2.44
2244 2384 5.814481 TCACTGACCACCATGATATTTTGA 58.186 37.500 0.00 0.00 0.00 2.69
2245 2385 6.425735 TCACTGACCACCATGATATTTTGAT 58.574 36.000 0.00 0.00 0.00 2.57
2249 2389 8.036575 ACTGACCACCATGATATTTTGATTTTG 58.963 33.333 0.00 0.00 0.00 2.44
2254 2394 7.042950 CACCATGATATTTTGATTTTGGCAGA 58.957 34.615 0.00 0.00 0.00 4.26
2275 2415 5.754406 CAGAAAATTGATTGCCTTCACAACA 59.246 36.000 0.00 0.00 31.03 3.33
2276 2416 5.987347 AGAAAATTGATTGCCTTCACAACAG 59.013 36.000 0.00 0.00 31.03 3.16
2283 2423 0.308993 GCCTTCACAACAGTGCTGTC 59.691 55.000 5.22 0.00 44.13 3.51
2289 2429 1.534163 CACAACAGTGCTGTCATGGAG 59.466 52.381 5.22 0.00 44.13 3.86
2343 2483 5.393135 CGAACTTATGTCTGGACTAGCTGAA 60.393 44.000 0.00 0.00 0.00 3.02
2397 2537 4.649674 TCCCACAGCTTGTCTAGGTATAAG 59.350 45.833 0.00 0.00 32.12 1.73
2425 2565 0.538057 CAGCCCTGAAAAGGTGAGCA 60.538 55.000 0.00 0.00 33.32 4.26
2426 2566 0.185901 AGCCCTGAAAAGGTGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91
2427 2567 0.315251 GCCCTGAAAAGGTGAGCAAC 59.685 55.000 0.00 0.00 0.00 4.17
2428 2568 1.986882 CCCTGAAAAGGTGAGCAACT 58.013 50.000 0.00 0.00 0.00 3.16
2429 2569 1.610522 CCCTGAAAAGGTGAGCAACTG 59.389 52.381 0.00 0.00 0.00 3.16
2430 2570 1.000938 CCTGAAAAGGTGAGCAACTGC 60.001 52.381 0.00 0.00 42.49 4.40
2462 2605 5.069648 TCACCTAGGATTCTGATGCTTACTG 59.930 44.000 17.98 0.00 35.39 2.74
2465 2608 4.148128 AGGATTCTGATGCTTACTGTGG 57.852 45.455 0.00 0.00 28.31 4.17
2466 2609 2.615912 GGATTCTGATGCTTACTGTGGC 59.384 50.000 0.00 0.00 0.00 5.01
2471 2616 4.445453 TCTGATGCTTACTGTGGCTATTG 58.555 43.478 8.53 0.00 0.00 1.90
2473 2618 4.588899 TGATGCTTACTGTGGCTATTGTT 58.411 39.130 8.53 0.00 0.00 2.83
2474 2619 4.395854 TGATGCTTACTGTGGCTATTGTTG 59.604 41.667 8.53 0.00 0.00 3.33
2481 2626 2.553602 CTGTGGCTATTGTTGTGCTTCA 59.446 45.455 0.00 0.00 0.00 3.02
2482 2627 2.553602 TGTGGCTATTGTTGTGCTTCAG 59.446 45.455 0.00 0.00 0.00 3.02
2483 2628 2.554032 GTGGCTATTGTTGTGCTTCAGT 59.446 45.455 0.00 0.00 0.00 3.41
2484 2629 3.004734 GTGGCTATTGTTGTGCTTCAGTT 59.995 43.478 0.00 0.00 0.00 3.16
2486 2631 4.099266 TGGCTATTGTTGTGCTTCAGTTTT 59.901 37.500 0.00 0.00 0.00 2.43
2493 2638 5.636837 TGTTGTGCTTCAGTTTTACTGTTC 58.363 37.500 6.71 0.00 46.03 3.18
2515 2754 6.839124 TCCAAACTAATTCATGATTGTGCT 57.161 33.333 0.00 0.00 0.00 4.40
2516 2755 6.855836 TCCAAACTAATTCATGATTGTGCTC 58.144 36.000 0.00 0.00 0.00 4.26
2517 2756 6.433716 TCCAAACTAATTCATGATTGTGCTCA 59.566 34.615 0.00 0.00 0.00 4.26
2518 2757 7.123098 TCCAAACTAATTCATGATTGTGCTCAT 59.877 33.333 0.00 0.00 36.29 2.90
2519 2758 7.762615 CCAAACTAATTCATGATTGTGCTCATT 59.237 33.333 0.00 0.00 33.59 2.57
2520 2759 9.146984 CAAACTAATTCATGATTGTGCTCATTT 57.853 29.630 0.00 0.00 33.59 2.32
2712 2959 2.518949 GGCAATCGTGTTAATGCAGTG 58.481 47.619 0.00 0.00 40.51 3.66
2733 2980 3.322254 TGAACCTTGACTTCTCTGAGGTC 59.678 47.826 4.59 6.02 39.71 3.85
2741 2988 3.406764 ACTTCTCTGAGGTCAATTGTGC 58.593 45.455 5.13 0.00 0.00 4.57
2743 2990 1.980765 TCTCTGAGGTCAATTGTGCCT 59.019 47.619 19.16 19.16 34.97 4.75
2744 2991 2.082231 CTCTGAGGTCAATTGTGCCTG 58.918 52.381 22.43 12.89 33.17 4.85
2765 3012 4.619973 TGCATGTCCAAATTTGTGTTCTC 58.380 39.130 16.73 3.21 0.00 2.87
2767 3014 4.559153 CATGTCCAAATTTGTGTTCTCCC 58.441 43.478 16.73 0.00 0.00 4.30
2775 3022 1.429930 TTGTGTTCTCCCTGTGCCTA 58.570 50.000 0.00 0.00 0.00 3.93
2780 3027 2.441750 TGTTCTCCCTGTGCCTAAAACT 59.558 45.455 0.00 0.00 0.00 2.66
2794 3041 7.502895 TGTGCCTAAAACTTGGTATTAAGTGAA 59.497 33.333 0.00 0.00 40.58 3.18
3068 3318 4.009675 GTGGTAGTTTGATGAATCTGGCA 58.990 43.478 0.00 0.00 0.00 4.92
3123 3373 3.243201 GGCAGAGAAGGTTTGTTGACTTG 60.243 47.826 0.00 0.00 0.00 3.16
3135 3385 2.290367 TGTTGACTTGCATACAGTGTGC 59.710 45.455 15.09 15.09 42.81 4.57
3155 3501 7.280652 AGTGTGCTTCTGTGCATTTTTAAATTT 59.719 29.630 0.00 0.00 45.23 1.82
3197 3543 4.642429 GAACCTGATGTTCTGGTAGTTGT 58.358 43.478 6.51 0.00 46.19 3.32
3199 3545 3.904339 ACCTGATGTTCTGGTAGTTGTCT 59.096 43.478 4.46 0.00 45.27 3.41
3229 3575 6.265196 TCATGCTTTTGTGGTTGAAGTTATCT 59.735 34.615 0.00 0.00 0.00 1.98
3231 3577 6.872920 TGCTTTTGTGGTTGAAGTTATCTTT 58.127 32.000 0.00 0.00 33.64 2.52
3233 3579 7.821846 TGCTTTTGTGGTTGAAGTTATCTTTTT 59.178 29.630 0.00 0.00 33.64 1.94
3281 3659 2.043227 CTCTAGCCCCAGGGACTTAAG 58.957 57.143 7.25 0.00 34.60 1.85
3420 3824 0.528017 AGATCTCTCGTTCGCTTGCA 59.472 50.000 0.00 0.00 0.00 4.08
3447 3851 4.446371 AGAGTGCACTTGCCATAAGATAC 58.554 43.478 22.65 2.84 41.18 2.24
3468 3872 2.045926 GCCCTTGCTGACGGTGAT 60.046 61.111 0.00 0.00 33.53 3.06
3655 4066 2.558359 CACGAAAGGAAAGCCCAAGATT 59.442 45.455 0.00 0.00 37.41 2.40
3718 4129 2.415512 CACTCCCGCTAAAGTAAGTTGC 59.584 50.000 0.00 0.00 0.00 4.17
3749 4160 6.073003 GCTTGCTCTATGTTTCAAAGTGTAGT 60.073 38.462 0.00 0.00 0.00 2.73
3762 4173 8.514330 TTCAAAGTGTAGTCCAGTTGTTAAAT 57.486 30.769 0.00 0.00 36.81 1.40
3763 4174 7.925993 TCAAAGTGTAGTCCAGTTGTTAAATG 58.074 34.615 0.00 0.00 36.81 2.32
3797 4284 9.950680 TTGTCAAAAACAGTAGAATTCTCATTC 57.049 29.630 12.24 1.78 39.58 2.67
3853 4340 7.602517 ATTAGCAGAATGTTACACTGACTTC 57.397 36.000 7.09 0.00 39.31 3.01
3897 4387 7.388776 TGGCAGATCTAGCAATTACATATGTTC 59.611 37.037 14.77 1.19 0.00 3.18
3920 4410 9.093970 GTTCTGTAATAGCAAAAACCAAACTTT 57.906 29.630 0.00 0.00 0.00 2.66
4008 4498 2.611292 GCATATTCTGTCACAGAGCACC 59.389 50.000 7.75 0.00 41.75 5.01
4011 4501 0.250038 TTCTGTCACAGAGCACCTGC 60.250 55.000 7.75 0.00 46.81 4.85
4107 4598 7.226325 TGAAATTTGCCTGACCTTATTTTGTTG 59.774 33.333 0.00 0.00 0.00 3.33
4267 4758 0.179113 GGCGAGCAGGAGAAAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
4434 4928 1.895798 AGAAATCAGACGCTGAGGACA 59.104 47.619 13.55 0.00 44.08 4.02
4447 4941 1.616628 AGGACACCCCCATGGAGAC 60.617 63.158 15.22 0.44 38.00 3.36
4454 4948 1.755395 CCCCATGGAGACCGACGTA 60.755 63.158 15.22 0.00 0.00 3.57
4469 4963 2.416836 CGACGTATCTGCCAAGAAGGAA 60.417 50.000 0.00 0.00 41.22 3.36
4477 4971 4.792068 TCTGCCAAGAAGGAAAAGAAGAA 58.208 39.130 0.00 0.00 41.22 2.52
4478 4972 4.823989 TCTGCCAAGAAGGAAAAGAAGAAG 59.176 41.667 0.00 0.00 41.22 2.85
4479 4973 4.792068 TGCCAAGAAGGAAAAGAAGAAGA 58.208 39.130 0.00 0.00 41.22 2.87
4507 5001 2.755542 AAGCACGCTGACGAGTGAGG 62.756 60.000 0.00 0.00 42.66 3.86
4690 5189 3.498777 CCAATGCTGTGCTCTCATCTATG 59.501 47.826 0.00 0.00 0.00 2.23
4761 5260 7.453393 TGTTGTTAATTGCCAATTTTATCCCA 58.547 30.769 8.15 0.00 32.38 4.37
4772 5271 7.665559 TGCCAATTTTATCCCATATCTAGTCAC 59.334 37.037 0.00 0.00 0.00 3.67
4785 5289 9.557061 CCATATCTAGTCACTACACTTACTGTA 57.443 37.037 0.00 0.00 33.91 2.74
4794 5298 5.417894 CACTACACTTACTGTACAGGGATGA 59.582 44.000 26.12 6.76 33.91 2.92
4796 5300 3.769844 ACACTTACTGTACAGGGATGAGG 59.230 47.826 26.12 11.68 0.00 3.86
4806 5310 0.898320 AGGGATGAGGACAACACTCG 59.102 55.000 0.00 0.00 37.79 4.18
4847 5360 4.269123 TGTTGCACAACACTAAACTAGACG 59.731 41.667 12.02 0.00 45.42 4.18
4921 5440 1.206878 TGCCACCACTGAGCATCTAT 58.793 50.000 0.00 0.00 34.92 1.98
4988 5767 3.938963 TCTGATGATACGCCTTGTTTTCC 59.061 43.478 0.00 0.00 0.00 3.13
4997 5776 1.468914 GCCTTGTTTTCCTCCGACATC 59.531 52.381 0.00 0.00 0.00 3.06
5000 5779 3.437049 CCTTGTTTTCCTCCGACATCTTC 59.563 47.826 0.00 0.00 0.00 2.87
5043 5823 9.939802 TTTGAAATAGTAGTCTTTTACTCCCTC 57.060 33.333 0.00 0.00 39.80 4.30
5044 5824 8.896722 TGAAATAGTAGTCTTTTACTCCCTCT 57.103 34.615 0.00 0.00 39.80 3.69
5045 5825 8.750298 TGAAATAGTAGTCTTTTACTCCCTCTG 58.250 37.037 0.00 0.00 39.80 3.35
5046 5826 8.667592 AAATAGTAGTCTTTTACTCCCTCTGT 57.332 34.615 0.00 0.00 39.80 3.41
5047 5827 7.885009 ATAGTAGTCTTTTACTCCCTCTGTC 57.115 40.000 0.00 0.00 39.80 3.51
5048 5828 5.894653 AGTAGTCTTTTACTCCCTCTGTCT 58.105 41.667 0.00 0.00 39.80 3.41
5049 5829 5.947566 AGTAGTCTTTTACTCCCTCTGTCTC 59.052 44.000 0.00 0.00 39.80 3.36
5050 5830 4.742012 AGTCTTTTACTCCCTCTGTCTCA 58.258 43.478 0.00 0.00 30.33 3.27
5051 5831 5.148502 AGTCTTTTACTCCCTCTGTCTCAA 58.851 41.667 0.00 0.00 30.33 3.02
5052 5832 5.602978 AGTCTTTTACTCCCTCTGTCTCAAA 59.397 40.000 0.00 0.00 30.33 2.69
5053 5833 6.099845 AGTCTTTTACTCCCTCTGTCTCAAAA 59.900 38.462 0.00 0.00 30.33 2.44
5054 5834 6.937465 GTCTTTTACTCCCTCTGTCTCAAAAT 59.063 38.462 0.00 0.00 0.00 1.82
5055 5835 8.095169 GTCTTTTACTCCCTCTGTCTCAAAATA 58.905 37.037 0.00 0.00 0.00 1.40
5056 5836 8.826765 TCTTTTACTCCCTCTGTCTCAAAATAT 58.173 33.333 0.00 0.00 0.00 1.28
5060 5840 7.979786 ACTCCCTCTGTCTCAAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
5061 5841 8.380742 ACTCCCTCTGTCTCAAAATATAAGAA 57.619 34.615 0.00 0.00 0.00 2.52
5062 5842 8.261522 ACTCCCTCTGTCTCAAAATATAAGAAC 58.738 37.037 0.00 0.00 0.00 3.01
5063 5843 7.265673 TCCCTCTGTCTCAAAATATAAGAACG 58.734 38.462 0.00 0.00 0.00 3.95
5064 5844 7.042335 CCCTCTGTCTCAAAATATAAGAACGT 58.958 38.462 0.00 0.00 0.00 3.99
5065 5845 7.549488 CCCTCTGTCTCAAAATATAAGAACGTT 59.451 37.037 0.00 0.00 0.00 3.99
5066 5846 8.936864 CCTCTGTCTCAAAATATAAGAACGTTT 58.063 33.333 0.46 0.00 0.00 3.60
5095 5875 6.716898 ACTATACTAGTGCCAAAAACGTTC 57.283 37.500 5.39 0.00 37.69 3.95
5096 5876 6.461640 ACTATACTAGTGCCAAAAACGTTCT 58.538 36.000 5.39 0.00 37.69 3.01
5097 5877 6.932960 ACTATACTAGTGCCAAAAACGTTCTT 59.067 34.615 5.39 0.00 37.69 2.52
5098 5878 8.090214 ACTATACTAGTGCCAAAAACGTTCTTA 58.910 33.333 5.39 0.00 37.69 2.10
5099 5879 7.916914 ATACTAGTGCCAAAAACGTTCTTAT 57.083 32.000 5.39 0.00 0.00 1.73
5101 5881 7.916914 ACTAGTGCCAAAAACGTTCTTATAT 57.083 32.000 0.00 0.00 0.00 0.86
5102 5882 8.331730 ACTAGTGCCAAAAACGTTCTTATATT 57.668 30.769 0.00 0.00 0.00 1.28
5103 5883 9.439500 ACTAGTGCCAAAAACGTTCTTATATTA 57.561 29.630 0.00 0.00 0.00 0.98
5106 5886 8.188139 AGTGCCAAAAACGTTCTTATATTATGG 58.812 33.333 0.00 3.63 0.00 2.74
5107 5887 7.434013 GTGCCAAAAACGTTCTTATATTATGGG 59.566 37.037 0.00 0.00 0.00 4.00
5108 5888 7.339721 TGCCAAAAACGTTCTTATATTATGGGA 59.660 33.333 0.00 1.11 0.00 4.37
5109 5889 7.646526 GCCAAAAACGTTCTTATATTATGGGAC 59.353 37.037 0.00 0.00 0.00 4.46
5110 5890 7.853929 CCAAAAACGTTCTTATATTATGGGACG 59.146 37.037 0.00 9.33 0.00 4.79
5111 5891 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
5112 5892 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
5113 5893 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
5114 5894 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
5115 5895 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
5116 5896 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
5117 5897 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5118 5898 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5119 5899 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5120 5900 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
5184 5966 4.331717 AGCTTTATGTTGGAATTACCGTCG 59.668 41.667 0.00 0.00 42.61 5.12
5210 5995 3.068165 ACCTGATGACGATATTTCTGCGA 59.932 43.478 0.00 0.00 0.00 5.10
5227 6012 1.936547 GCGACTTTCTGAGGCTTATGG 59.063 52.381 0.00 0.00 0.00 2.74
5391 6179 9.391006 TGTGTCCCTATATTTTAAGATCAACAC 57.609 33.333 0.00 0.00 33.29 3.32
5502 6291 2.670905 CCATGATGCAAACATGCAACTG 59.329 45.455 23.11 11.41 44.73 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.834896 ACACACTCCGGCATGGTATTA 59.165 47.619 0.00 0.00 39.52 0.98
39 40 1.702401 TCCCACATGGCTGTTCACTAA 59.298 47.619 0.00 0.00 31.62 2.24
48 49 4.141088 ACATGATAGATTTCCCACATGGCT 60.141 41.667 0.00 0.00 39.20 4.75
95 96 2.738846 CAACATATGCGCTAGGTCATCC 59.261 50.000 9.73 0.00 0.00 3.51
98 99 2.979814 ACAACATATGCGCTAGGTCA 57.020 45.000 9.73 0.00 0.00 4.02
284 287 0.109342 ATATACCAGCAGGCAGTGGC 59.891 55.000 9.02 9.02 37.34 5.01
330 333 3.134623 TGGAGACGCAATATCATCACCTT 59.865 43.478 0.00 0.00 0.00 3.50
377 380 2.766828 GGACATAGTTCAGTGCTAGGGT 59.233 50.000 0.00 0.00 0.00 4.34
535 539 5.945191 TGGATGCTGACATGAAAATTCTACA 59.055 36.000 0.00 0.00 36.35 2.74
538 542 4.768448 TGTGGATGCTGACATGAAAATTCT 59.232 37.500 0.00 0.00 36.35 2.40
542 546 3.635836 TGTTGTGGATGCTGACATGAAAA 59.364 39.130 0.00 0.00 36.35 2.29
552 556 3.769739 TCTAGTGTTGTTGTGGATGCT 57.230 42.857 0.00 0.00 0.00 3.79
680 684 4.018506 TGAAATTAAGAGCCTCCACCATCA 60.019 41.667 0.00 0.00 0.00 3.07
682 686 4.591321 TGAAATTAAGAGCCTCCACCAT 57.409 40.909 0.00 0.00 0.00 3.55
951 961 4.145807 TCGGGAATCAGCCTTTGTAAAAA 58.854 39.130 0.00 0.00 0.00 1.94
952 962 3.757270 TCGGGAATCAGCCTTTGTAAAA 58.243 40.909 0.00 0.00 0.00 1.52
953 963 3.426787 TCGGGAATCAGCCTTTGTAAA 57.573 42.857 0.00 0.00 0.00 2.01
954 964 3.426787 TTCGGGAATCAGCCTTTGTAA 57.573 42.857 0.00 0.00 0.00 2.41
955 965 3.426787 TTTCGGGAATCAGCCTTTGTA 57.573 42.857 0.00 0.00 0.00 2.41
956 966 2.286365 TTTCGGGAATCAGCCTTTGT 57.714 45.000 0.00 0.00 0.00 2.83
957 967 3.658757 TTTTTCGGGAATCAGCCTTTG 57.341 42.857 0.00 0.00 0.00 2.77
977 987 6.976934 TCTTAAACCAATCAGAGCCTTTTT 57.023 33.333 0.00 0.00 0.00 1.94
978 988 6.721208 TCATCTTAAACCAATCAGAGCCTTTT 59.279 34.615 0.00 0.00 0.00 2.27
979 989 6.248433 TCATCTTAAACCAATCAGAGCCTTT 58.752 36.000 0.00 0.00 0.00 3.11
980 990 5.819991 TCATCTTAAACCAATCAGAGCCTT 58.180 37.500 0.00 0.00 0.00 4.35
981 991 5.435291 CTCATCTTAAACCAATCAGAGCCT 58.565 41.667 0.00 0.00 0.00 4.58
982 992 4.036144 GCTCATCTTAAACCAATCAGAGCC 59.964 45.833 0.00 0.00 39.87 4.70
983 993 4.036144 GGCTCATCTTAAACCAATCAGAGC 59.964 45.833 0.00 0.00 43.71 4.09
984 994 4.578105 GGGCTCATCTTAAACCAATCAGAG 59.422 45.833 0.00 0.00 0.00 3.35
985 995 4.228210 AGGGCTCATCTTAAACCAATCAGA 59.772 41.667 0.00 0.00 0.00 3.27
986 996 4.530875 AGGGCTCATCTTAAACCAATCAG 58.469 43.478 0.00 0.00 0.00 2.90
987 997 4.591321 AGGGCTCATCTTAAACCAATCA 57.409 40.909 0.00 0.00 0.00 2.57
988 998 7.258441 GTTTTAGGGCTCATCTTAAACCAATC 58.742 38.462 0.00 0.00 31.50 2.67
989 999 6.154534 GGTTTTAGGGCTCATCTTAAACCAAT 59.845 38.462 15.45 0.00 45.59 3.16
990 1000 5.479027 GGTTTTAGGGCTCATCTTAAACCAA 59.521 40.000 15.45 0.00 45.59 3.67
991 1001 5.014202 GGTTTTAGGGCTCATCTTAAACCA 58.986 41.667 15.45 0.00 45.59 3.67
992 1002 4.401519 GGGTTTTAGGGCTCATCTTAAACC 59.598 45.833 13.21 13.21 45.57 3.27
993 1003 5.125578 CAGGGTTTTAGGGCTCATCTTAAAC 59.874 44.000 0.00 0.00 34.77 2.01
994 1004 5.261216 CAGGGTTTTAGGGCTCATCTTAAA 58.739 41.667 0.00 0.00 0.00 1.52
995 1005 4.325030 CCAGGGTTTTAGGGCTCATCTTAA 60.325 45.833 0.00 0.00 0.00 1.85
996 1006 3.202151 CCAGGGTTTTAGGGCTCATCTTA 59.798 47.826 0.00 0.00 0.00 2.10
997 1007 2.024941 CCAGGGTTTTAGGGCTCATCTT 60.025 50.000 0.00 0.00 0.00 2.40
998 1008 1.566231 CCAGGGTTTTAGGGCTCATCT 59.434 52.381 0.00 0.00 0.00 2.90
999 1009 2.024306 GCCAGGGTTTTAGGGCTCATC 61.024 57.143 0.00 0.00 43.09 2.92
1000 1010 0.033109 GCCAGGGTTTTAGGGCTCAT 60.033 55.000 0.00 0.00 43.09 2.90
1001 1011 1.382629 GCCAGGGTTTTAGGGCTCA 59.617 57.895 0.00 0.00 43.09 4.26
1020 1030 1.909986 GTGGGGAGAAGAAGTAAGGCT 59.090 52.381 0.00 0.00 0.00 4.58
1026 1036 1.918800 CGGGGTGGGGAGAAGAAGT 60.919 63.158 0.00 0.00 0.00 3.01
1107 1125 1.170919 TGTATAGGAGGACGAGCGGC 61.171 60.000 0.00 0.00 0.00 6.53
1208 1231 4.497984 AGCACACCAACCACGCCA 62.498 61.111 0.00 0.00 0.00 5.69
1248 1271 2.811101 CACCTGCCGGCAAAAACA 59.189 55.556 32.09 6.08 0.00 2.83
1344 1370 0.831307 GGGAGCCAATACCTCGACTT 59.169 55.000 0.00 0.00 0.00 3.01
1345 1371 1.392710 CGGGAGCCAATACCTCGACT 61.393 60.000 0.00 0.00 0.00 4.18
1370 1396 4.148825 CACCGGCGGAGAGAAGGG 62.149 72.222 35.78 2.05 0.00 3.95
1373 1399 0.968901 ACATACACCGGCGGAGAGAA 60.969 55.000 35.78 16.04 0.00 2.87
1378 1404 0.390603 CTCAAACATACACCGGCGGA 60.391 55.000 35.78 11.41 0.00 5.54
1381 1407 0.802494 CACCTCAAACATACACCGGC 59.198 55.000 0.00 0.00 0.00 6.13
1384 1410 2.482721 CGAACCACCTCAAACATACACC 59.517 50.000 0.00 0.00 0.00 4.16
1389 1415 4.429108 CAAAAACGAACCACCTCAAACAT 58.571 39.130 0.00 0.00 0.00 2.71
1393 1419 2.424246 GACCAAAAACGAACCACCTCAA 59.576 45.455 0.00 0.00 0.00 3.02
1394 1420 2.018515 GACCAAAAACGAACCACCTCA 58.981 47.619 0.00 0.00 0.00 3.86
1401 1447 2.159296 AGCCAACAGACCAAAAACGAAC 60.159 45.455 0.00 0.00 0.00 3.95
1404 1450 3.701532 TTAGCCAACAGACCAAAAACG 57.298 42.857 0.00 0.00 0.00 3.60
1405 1451 5.195001 TCATTAGCCAACAGACCAAAAAC 57.805 39.130 0.00 0.00 0.00 2.43
1409 1455 4.016444 GGAATCATTAGCCAACAGACCAA 58.984 43.478 0.00 0.00 0.00 3.67
1411 1457 3.629398 CAGGAATCATTAGCCAACAGACC 59.371 47.826 0.00 0.00 0.00 3.85
1412 1458 4.265073 ACAGGAATCATTAGCCAACAGAC 58.735 43.478 0.00 0.00 0.00 3.51
1413 1459 4.574674 ACAGGAATCATTAGCCAACAGA 57.425 40.909 0.00 0.00 0.00 3.41
1414 1460 5.649782 AAACAGGAATCATTAGCCAACAG 57.350 39.130 0.00 0.00 0.00 3.16
1441 1487 3.255642 GCCACAGATCCTAAACAGCAAAA 59.744 43.478 0.00 0.00 0.00 2.44
1442 1488 2.819608 GCCACAGATCCTAAACAGCAAA 59.180 45.455 0.00 0.00 0.00 3.68
1445 1491 2.012673 CTGCCACAGATCCTAAACAGC 58.987 52.381 0.00 0.00 32.44 4.40
1446 1492 2.237143 TCCTGCCACAGATCCTAAACAG 59.763 50.000 0.00 0.00 32.44 3.16
1447 1493 2.027192 GTCCTGCCACAGATCCTAAACA 60.027 50.000 0.00 0.00 32.44 2.83
1448 1494 2.237392 AGTCCTGCCACAGATCCTAAAC 59.763 50.000 0.00 0.00 32.44 2.01
1449 1495 2.551270 AGTCCTGCCACAGATCCTAAA 58.449 47.619 0.00 0.00 32.44 1.85
1450 1496 2.254152 AGTCCTGCCACAGATCCTAA 57.746 50.000 0.00 0.00 32.44 2.69
1451 1497 2.111384 GAAGTCCTGCCACAGATCCTA 58.889 52.381 0.00 0.00 32.44 2.94
1463 1509 2.202492 CGACGAGGCGAAGTCCTG 60.202 66.667 0.00 0.00 34.39 3.86
1471 1517 3.479269 GCTTTGTCCGACGAGGCG 61.479 66.667 7.09 0.00 40.77 5.52
1509 1555 5.823045 ACGAGAAAAATCAAGAACAGAGGTT 59.177 36.000 0.00 0.00 40.76 3.50
1510 1556 5.237344 CACGAGAAAAATCAAGAACAGAGGT 59.763 40.000 0.00 0.00 0.00 3.85
1511 1557 5.334414 CCACGAGAAAAATCAAGAACAGAGG 60.334 44.000 0.00 0.00 0.00 3.69
1519 1567 5.762045 ACAACATCCACGAGAAAAATCAAG 58.238 37.500 0.00 0.00 0.00 3.02
1522 1570 5.049405 ACTGACAACATCCACGAGAAAAATC 60.049 40.000 0.00 0.00 0.00 2.17
1523 1571 4.821805 ACTGACAACATCCACGAGAAAAAT 59.178 37.500 0.00 0.00 0.00 1.82
1524 1572 4.196193 ACTGACAACATCCACGAGAAAAA 58.804 39.130 0.00 0.00 0.00 1.94
1525 1573 3.804036 ACTGACAACATCCACGAGAAAA 58.196 40.909 0.00 0.00 0.00 2.29
1528 1576 2.754472 CAACTGACAACATCCACGAGA 58.246 47.619 0.00 0.00 0.00 4.04
1532 1580 1.949525 ACAGCAACTGACAACATCCAC 59.050 47.619 0.78 0.00 35.18 4.02
1536 1584 4.228912 GCTTTACAGCAACTGACAACAT 57.771 40.909 0.78 0.00 46.49 2.71
1553 1601 9.643693 CAGATTAACCATAAAAATCACAGCTTT 57.356 29.630 0.00 0.00 33.06 3.51
1555 1603 7.147846 CCCAGATTAACCATAAAAATCACAGCT 60.148 37.037 0.00 0.00 33.06 4.24
1556 1604 6.980397 CCCAGATTAACCATAAAAATCACAGC 59.020 38.462 0.00 0.00 33.06 4.40
1557 1605 8.190784 GTCCCAGATTAACCATAAAAATCACAG 58.809 37.037 0.00 0.00 33.06 3.66
1558 1606 7.123547 GGTCCCAGATTAACCATAAAAATCACA 59.876 37.037 0.00 0.00 33.06 3.58
1559 1607 7.342026 AGGTCCCAGATTAACCATAAAAATCAC 59.658 37.037 0.00 0.00 35.43 3.06
1560 1608 7.341769 CAGGTCCCAGATTAACCATAAAAATCA 59.658 37.037 0.00 0.00 35.43 2.57
1561 1609 7.684428 GCAGGTCCCAGATTAACCATAAAAATC 60.684 40.741 0.00 0.00 35.43 2.17
1562 1610 6.098266 GCAGGTCCCAGATTAACCATAAAAAT 59.902 38.462 0.00 0.00 35.43 1.82
1563 1611 5.420739 GCAGGTCCCAGATTAACCATAAAAA 59.579 40.000 0.00 0.00 35.43 1.94
1564 1612 4.953579 GCAGGTCCCAGATTAACCATAAAA 59.046 41.667 0.00 0.00 35.43 1.52
1567 1615 3.119319 TGCAGGTCCCAGATTAACCATA 58.881 45.455 0.00 0.00 35.43 2.74
1568 1616 1.922447 TGCAGGTCCCAGATTAACCAT 59.078 47.619 0.00 0.00 35.43 3.55
1569 1617 1.367346 TGCAGGTCCCAGATTAACCA 58.633 50.000 0.00 0.00 35.43 3.67
1571 1699 3.877508 GTGTATGCAGGTCCCAGATTAAC 59.122 47.826 0.00 0.00 0.00 2.01
1575 1703 0.839946 GGTGTATGCAGGTCCCAGAT 59.160 55.000 0.00 0.00 0.00 2.90
1581 1712 4.473477 AGAAACTAGGTGTATGCAGGTC 57.527 45.455 0.00 0.00 0.00 3.85
1583 1714 4.406003 AGGTAGAAACTAGGTGTATGCAGG 59.594 45.833 0.00 0.00 0.00 4.85
1588 1719 6.095160 CGAGACAAGGTAGAAACTAGGTGTAT 59.905 42.308 0.00 0.00 0.00 2.29
1590 1721 4.217983 CGAGACAAGGTAGAAACTAGGTGT 59.782 45.833 0.00 0.00 0.00 4.16
1591 1722 4.380655 CCGAGACAAGGTAGAAACTAGGTG 60.381 50.000 0.00 0.00 0.00 4.00
1593 1724 3.762823 ACCGAGACAAGGTAGAAACTAGG 59.237 47.826 0.00 0.00 40.80 3.02
1594 1725 5.048224 TGAACCGAGACAAGGTAGAAACTAG 60.048 44.000 0.00 0.00 41.95 2.57
1595 1726 4.828939 TGAACCGAGACAAGGTAGAAACTA 59.171 41.667 0.00 0.00 41.95 2.24
1602 1733 2.168496 CCTCTGAACCGAGACAAGGTA 58.832 52.381 0.00 0.00 41.95 3.08
1604 1735 0.969894 ACCTCTGAACCGAGACAAGG 59.030 55.000 0.00 0.00 32.74 3.61
1608 1739 0.244178 GGTGACCTCTGAACCGAGAC 59.756 60.000 0.00 0.00 32.74 3.36
1609 1740 2.654802 GGTGACCTCTGAACCGAGA 58.345 57.895 0.00 0.00 32.74 4.04
1616 1747 1.888436 GACATGGCGGTGACCTCTGA 61.888 60.000 0.00 0.00 0.00 3.27
1618 1749 1.194781 AAGACATGGCGGTGACCTCT 61.195 55.000 0.00 0.00 0.00 3.69
1619 1750 0.741221 GAAGACATGGCGGTGACCTC 60.741 60.000 0.00 0.00 0.00 3.85
1622 1753 0.320771 ACAGAAGACATGGCGGTGAC 60.321 55.000 5.00 0.00 0.00 3.67
1624 1755 1.238439 AAACAGAAGACATGGCGGTG 58.762 50.000 0.00 0.00 0.00 4.94
1625 1756 1.981256 AAAACAGAAGACATGGCGGT 58.019 45.000 0.00 0.00 0.00 5.68
1626 1757 2.293122 TCAAAAACAGAAGACATGGCGG 59.707 45.455 0.00 0.00 0.00 6.13
1627 1758 3.624326 TCAAAAACAGAAGACATGGCG 57.376 42.857 0.00 0.00 0.00 5.69
1628 1759 5.291971 ACATTCAAAAACAGAAGACATGGC 58.708 37.500 0.00 0.00 0.00 4.40
1630 1761 7.149080 CGCTAACATTCAAAAACAGAAGACATG 60.149 37.037 0.00 0.00 0.00 3.21
1631 1762 6.857964 CGCTAACATTCAAAAACAGAAGACAT 59.142 34.615 0.00 0.00 0.00 3.06
1632 1763 6.198687 CGCTAACATTCAAAAACAGAAGACA 58.801 36.000 0.00 0.00 0.00 3.41
1633 1764 5.625311 CCGCTAACATTCAAAAACAGAAGAC 59.375 40.000 0.00 0.00 0.00 3.01
1634 1765 5.298276 ACCGCTAACATTCAAAAACAGAAGA 59.702 36.000 0.00 0.00 0.00 2.87
1635 1766 5.519722 ACCGCTAACATTCAAAAACAGAAG 58.480 37.500 0.00 0.00 0.00 2.85
1636 1767 5.508200 ACCGCTAACATTCAAAAACAGAA 57.492 34.783 0.00 0.00 0.00 3.02
1637 1768 5.066634 TGAACCGCTAACATTCAAAAACAGA 59.933 36.000 0.00 0.00 29.56 3.41
1638 1769 5.277825 TGAACCGCTAACATTCAAAAACAG 58.722 37.500 0.00 0.00 29.56 3.16
1639 1770 5.250235 TGAACCGCTAACATTCAAAAACA 57.750 34.783 0.00 0.00 29.56 2.83
1640 1771 4.679654 CCTGAACCGCTAACATTCAAAAAC 59.320 41.667 0.00 0.00 32.19 2.43
1641 1772 4.339814 ACCTGAACCGCTAACATTCAAAAA 59.660 37.500 0.00 0.00 32.19 1.94
1642 1773 3.886505 ACCTGAACCGCTAACATTCAAAA 59.113 39.130 0.00 0.00 32.19 2.44
1643 1774 3.482436 ACCTGAACCGCTAACATTCAAA 58.518 40.909 0.00 0.00 32.19 2.69
1644 1775 3.134574 ACCTGAACCGCTAACATTCAA 57.865 42.857 0.00 0.00 32.19 2.69
1645 1776 2.851263 ACCTGAACCGCTAACATTCA 57.149 45.000 0.00 0.00 0.00 2.57
1646 1777 3.071479 TGAACCTGAACCGCTAACATTC 58.929 45.455 0.00 0.00 0.00 2.67
1647 1778 3.134574 TGAACCTGAACCGCTAACATT 57.865 42.857 0.00 0.00 0.00 2.71
1648 1779 2.812011 GTTGAACCTGAACCGCTAACAT 59.188 45.455 0.00 0.00 0.00 2.71
1649 1780 2.215196 GTTGAACCTGAACCGCTAACA 58.785 47.619 0.00 0.00 0.00 2.41
1650 1781 1.193874 CGTTGAACCTGAACCGCTAAC 59.806 52.381 0.00 0.00 0.00 2.34
1651 1782 1.068895 TCGTTGAACCTGAACCGCTAA 59.931 47.619 0.00 0.00 0.00 3.09
1652 1783 0.675083 TCGTTGAACCTGAACCGCTA 59.325 50.000 0.00 0.00 0.00 4.26
1653 1784 0.600255 CTCGTTGAACCTGAACCGCT 60.600 55.000 0.00 0.00 0.00 5.52
1654 1785 1.566018 CCTCGTTGAACCTGAACCGC 61.566 60.000 0.00 0.00 0.00 5.68
1655 1786 0.949105 CCCTCGTTGAACCTGAACCG 60.949 60.000 0.00 0.00 0.00 4.44
1656 1787 0.395312 TCCCTCGTTGAACCTGAACC 59.605 55.000 0.00 0.00 0.00 3.62
1657 1788 1.070289 AGTCCCTCGTTGAACCTGAAC 59.930 52.381 0.00 0.00 0.00 3.18
1658 1789 1.420430 AGTCCCTCGTTGAACCTGAA 58.580 50.000 0.00 0.00 0.00 3.02
1659 1790 1.420430 AAGTCCCTCGTTGAACCTGA 58.580 50.000 0.00 0.00 0.00 3.86
1660 1791 3.262420 CATAAGTCCCTCGTTGAACCTG 58.738 50.000 0.00 0.00 0.00 4.00
1661 1792 2.354805 GCATAAGTCCCTCGTTGAACCT 60.355 50.000 0.00 0.00 0.00 3.50
1662 1793 2.007608 GCATAAGTCCCTCGTTGAACC 58.992 52.381 0.00 0.00 0.00 3.62
1663 1794 2.973945 AGCATAAGTCCCTCGTTGAAC 58.026 47.619 0.00 0.00 0.00 3.18
1664 1795 3.334691 CAAGCATAAGTCCCTCGTTGAA 58.665 45.455 0.00 0.00 0.00 2.69
1665 1796 2.935238 GCAAGCATAAGTCCCTCGTTGA 60.935 50.000 0.00 0.00 0.00 3.18
1666 1797 1.398390 GCAAGCATAAGTCCCTCGTTG 59.602 52.381 0.00 0.00 0.00 4.10
1667 1798 1.003118 TGCAAGCATAAGTCCCTCGTT 59.997 47.619 0.00 0.00 0.00 3.85
1668 1799 0.613260 TGCAAGCATAAGTCCCTCGT 59.387 50.000 0.00 0.00 0.00 4.18
1669 1800 1.667724 CTTGCAAGCATAAGTCCCTCG 59.332 52.381 14.65 0.00 0.00 4.63
1670 1801 2.716217 ACTTGCAAGCATAAGTCCCTC 58.284 47.619 26.27 0.00 31.88 4.30
1671 1802 2.887151 ACTTGCAAGCATAAGTCCCT 57.113 45.000 26.27 0.00 31.88 4.20
1672 1803 5.582689 ATTAACTTGCAAGCATAAGTCCC 57.417 39.130 26.27 0.00 36.19 4.46
1673 1804 7.889589 AAAATTAACTTGCAAGCATAAGTCC 57.110 32.000 26.27 0.00 36.19 3.85
1725 1856 7.122055 CCAACCAGGCAGTCAATATACTAAAAA 59.878 37.037 0.00 0.00 0.00 1.94
1726 1857 6.601613 CCAACCAGGCAGTCAATATACTAAAA 59.398 38.462 0.00 0.00 0.00 1.52
1736 1867 0.038166 GGATCCAACCAGGCAGTCAA 59.962 55.000 6.95 0.00 37.29 3.18
1739 1870 1.136329 AGTGGATCCAACCAGGCAGT 61.136 55.000 18.20 0.00 40.85 4.40
1740 1871 0.679002 CAGTGGATCCAACCAGGCAG 60.679 60.000 18.20 0.00 40.85 4.85
1741 1872 1.379916 CAGTGGATCCAACCAGGCA 59.620 57.895 18.20 0.00 40.85 4.75
1742 1873 0.678048 GACAGTGGATCCAACCAGGC 60.678 60.000 18.20 4.97 40.85 4.85
1743 1874 0.391661 CGACAGTGGATCCAACCAGG 60.392 60.000 18.20 6.91 40.85 4.45
1746 1877 0.323629 TTCCGACAGTGGATCCAACC 59.676 55.000 18.20 4.93 38.00 3.77
1748 1879 1.639722 TCTTCCGACAGTGGATCCAA 58.360 50.000 18.20 0.00 38.00 3.53
1752 1883 6.653989 AGATAAAAATCTTCCGACAGTGGAT 58.346 36.000 0.00 0.00 38.00 3.41
1753 1884 6.049955 AGATAAAAATCTTCCGACAGTGGA 57.950 37.500 0.00 0.00 35.83 4.02
1754 1885 6.018669 GCTAGATAAAAATCTTCCGACAGTGG 60.019 42.308 0.00 0.00 32.36 4.00
1755 1886 6.018669 GGCTAGATAAAAATCTTCCGACAGTG 60.019 42.308 0.00 0.00 32.36 3.66
1756 1887 6.049790 GGCTAGATAAAAATCTTCCGACAGT 58.950 40.000 0.00 0.00 32.36 3.55
1757 1888 6.049149 TGGCTAGATAAAAATCTTCCGACAG 58.951 40.000 0.00 0.00 32.36 3.51
1759 1890 6.920569 TTGGCTAGATAAAAATCTTCCGAC 57.079 37.500 0.00 0.00 32.36 4.79
1760 1891 9.273016 CTAATTGGCTAGATAAAAATCTTCCGA 57.727 33.333 0.00 0.00 32.36 4.55
1761 1892 8.507249 CCTAATTGGCTAGATAAAAATCTTCCG 58.493 37.037 0.00 0.00 32.36 4.30
1779 1910 2.353011 CCACAACAAGCTGCCTAATTGG 60.353 50.000 0.00 0.00 39.35 3.16
1780 1911 2.353011 CCCACAACAAGCTGCCTAATTG 60.353 50.000 0.00 0.00 0.00 2.32
1781 1912 1.895131 CCCACAACAAGCTGCCTAATT 59.105 47.619 0.00 0.00 0.00 1.40
1782 1913 1.075374 TCCCACAACAAGCTGCCTAAT 59.925 47.619 0.00 0.00 0.00 1.73
1783 1914 0.476338 TCCCACAACAAGCTGCCTAA 59.524 50.000 0.00 0.00 0.00 2.69
1784 1915 0.036732 CTCCCACAACAAGCTGCCTA 59.963 55.000 0.00 0.00 0.00 3.93
1785 1916 1.228367 CTCCCACAACAAGCTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
1786 1917 2.270986 CCTCCCACAACAAGCTGCC 61.271 63.158 0.00 0.00 0.00 4.85
1787 1918 2.924105 GCCTCCCACAACAAGCTGC 61.924 63.158 0.00 0.00 0.00 5.25
1788 1919 0.825010 AAGCCTCCCACAACAAGCTG 60.825 55.000 0.00 0.00 0.00 4.24
1789 1920 0.771127 TAAGCCTCCCACAACAAGCT 59.229 50.000 0.00 0.00 0.00 3.74
1790 1921 1.168714 CTAAGCCTCCCACAACAAGC 58.831 55.000 0.00 0.00 0.00 4.01
1791 1922 2.568623 ACTAAGCCTCCCACAACAAG 57.431 50.000 0.00 0.00 0.00 3.16
1792 1923 2.955660 CAAACTAAGCCTCCCACAACAA 59.044 45.455 0.00 0.00 0.00 2.83
1793 1924 2.092103 ACAAACTAAGCCTCCCACAACA 60.092 45.455 0.00 0.00 0.00 3.33
1794 1925 2.293399 CACAAACTAAGCCTCCCACAAC 59.707 50.000 0.00 0.00 0.00 3.32
1795 1926 2.582052 CACAAACTAAGCCTCCCACAA 58.418 47.619 0.00 0.00 0.00 3.33
1800 1931 1.613520 GGACCCACAAACTAAGCCTCC 60.614 57.143 0.00 0.00 0.00 4.30
1829 1960 9.859427 CTCAACAGAAAGCATTCCAAATTATTA 57.141 29.630 0.00 0.00 36.12 0.98
1830 1961 8.370182 ACTCAACAGAAAGCATTCCAAATTATT 58.630 29.630 0.00 0.00 36.12 1.40
1831 1962 7.816031 CACTCAACAGAAAGCATTCCAAATTAT 59.184 33.333 0.00 0.00 36.12 1.28
1834 1965 5.510179 CCACTCAACAGAAAGCATTCCAAAT 60.510 40.000 0.00 0.00 36.12 2.32
1838 1970 2.352127 GCCACTCAACAGAAAGCATTCC 60.352 50.000 0.00 0.00 36.12 3.01
1840 1973 1.615392 GGCCACTCAACAGAAAGCATT 59.385 47.619 0.00 0.00 0.00 3.56
1844 1977 1.542915 CCATGGCCACTCAACAGAAAG 59.457 52.381 8.16 0.00 0.00 2.62
1847 1980 1.379916 CCCATGGCCACTCAACAGA 59.620 57.895 8.16 0.00 0.00 3.41
1871 2004 3.791973 AGGTAAGATCTCAGCGAACAG 57.208 47.619 0.00 0.00 0.00 3.16
1872 2005 4.038042 CCATAGGTAAGATCTCAGCGAACA 59.962 45.833 0.00 0.00 0.00 3.18
1873 2006 4.551388 CCATAGGTAAGATCTCAGCGAAC 58.449 47.826 0.00 0.00 0.00 3.95
1875 2008 2.558795 GCCATAGGTAAGATCTCAGCGA 59.441 50.000 0.00 0.00 0.00 4.93
1876 2009 2.560542 AGCCATAGGTAAGATCTCAGCG 59.439 50.000 0.00 0.00 0.00 5.18
1877 2010 3.323403 ACAGCCATAGGTAAGATCTCAGC 59.677 47.826 0.00 0.00 0.00 4.26
1881 2014 4.140663 ACCCTACAGCCATAGGTAAGATCT 60.141 45.833 9.47 0.00 40.31 2.75
1882 2015 4.161102 ACCCTACAGCCATAGGTAAGATC 58.839 47.826 9.47 0.00 40.31 2.75
1884 2017 3.700863 ACCCTACAGCCATAGGTAAGA 57.299 47.619 9.47 0.00 40.31 2.10
1885 2018 3.181454 CCAACCCTACAGCCATAGGTAAG 60.181 52.174 9.47 0.00 40.31 2.34
1886 2019 2.775384 CCAACCCTACAGCCATAGGTAA 59.225 50.000 9.47 0.00 40.31 2.85
1888 2021 1.213296 CCAACCCTACAGCCATAGGT 58.787 55.000 9.47 0.00 40.31 3.08
1890 2023 2.505819 AGAACCAACCCTACAGCCATAG 59.494 50.000 0.00 0.00 0.00 2.23
1892 2025 1.282157 GAGAACCAACCCTACAGCCAT 59.718 52.381 0.00 0.00 0.00 4.40
1893 2026 0.690762 GAGAACCAACCCTACAGCCA 59.309 55.000 0.00 0.00 0.00 4.75
1895 2028 2.814336 CAAAGAGAACCAACCCTACAGC 59.186 50.000 0.00 0.00 0.00 4.40
1896 2029 4.086706 ACAAAGAGAACCAACCCTACAG 57.913 45.455 0.00 0.00 0.00 2.74
1898 2031 3.819337 GGAACAAAGAGAACCAACCCTAC 59.181 47.826 0.00 0.00 0.00 3.18
1899 2032 3.720002 AGGAACAAAGAGAACCAACCCTA 59.280 43.478 0.00 0.00 0.00 3.53
1900 2033 2.514160 AGGAACAAAGAGAACCAACCCT 59.486 45.455 0.00 0.00 0.00 4.34
1901 2034 2.945456 AGGAACAAAGAGAACCAACCC 58.055 47.619 0.00 0.00 0.00 4.11
1902 2035 4.207955 AGAAGGAACAAAGAGAACCAACC 58.792 43.478 0.00 0.00 0.00 3.77
1903 2036 5.836821 AAGAAGGAACAAAGAGAACCAAC 57.163 39.130 0.00 0.00 0.00 3.77
1904 2037 9.635404 TTAATAAGAAGGAACAAAGAGAACCAA 57.365 29.630 0.00 0.00 0.00 3.67
1924 2059 9.878667 TCAACGAACAGATAACATCCTTAATAA 57.121 29.630 0.00 0.00 0.00 1.40
1933 2068 8.948631 AGTTATCATCAACGAACAGATAACAT 57.051 30.769 19.58 7.57 46.68 2.71
1938 2073 8.873830 CAAGTTAGTTATCATCAACGAACAGAT 58.126 33.333 12.36 0.00 42.79 2.90
1941 2076 6.649141 AGCAAGTTAGTTATCATCAACGAACA 59.351 34.615 12.36 0.00 42.79 3.18
1942 2077 6.955963 CAGCAAGTTAGTTATCATCAACGAAC 59.044 38.462 0.00 4.46 41.53 3.95
1943 2078 6.649141 ACAGCAAGTTAGTTATCATCAACGAA 59.351 34.615 0.00 0.00 33.50 3.85
1945 2080 6.408858 ACAGCAAGTTAGTTATCATCAACG 57.591 37.500 0.00 0.00 33.50 4.10
1952 2089 7.625828 AACCCATTACAGCAAGTTAGTTATC 57.374 36.000 0.00 0.00 0.00 1.75
1959 2096 9.030452 TGATATAAAAACCCATTACAGCAAGTT 57.970 29.630 0.00 0.00 0.00 2.66
1974 2111 6.374333 TCAGCTCAACCACCTGATATAAAAAC 59.626 38.462 0.00 0.00 31.16 2.43
1975 2112 6.480763 TCAGCTCAACCACCTGATATAAAAA 58.519 36.000 0.00 0.00 31.16 1.94
2151 2288 7.504238 TCCAAACTAACCAGCTTTTCTTTGATA 59.496 33.333 0.00 0.00 0.00 2.15
2170 2307 2.224402 GGAACAGCTGAGTCTCCAAACT 60.224 50.000 23.35 0.00 0.00 2.66
2192 2329 9.154847 CACTAGTATTGATCAACTCATGTGAAA 57.845 33.333 11.07 0.00 32.72 2.69
2201 2338 9.190317 TCAGTGATACACTAGTATTGATCAACT 57.810 33.333 11.07 7.82 43.43 3.16
2210 2347 5.516044 TGGTGGTCAGTGATACACTAGTAT 58.484 41.667 22.34 0.00 43.43 2.12
2213 2350 4.402474 TCATGGTGGTCAGTGATACACTAG 59.598 45.833 22.34 15.35 43.43 2.57
2216 2353 3.610040 TCATGGTGGTCAGTGATACAC 57.390 47.619 17.75 17.75 34.10 2.90
2222 2362 6.704289 ATCAAAATATCATGGTGGTCAGTG 57.296 37.500 0.00 0.00 0.00 3.66
2224 2364 7.493320 CCAAAATCAAAATATCATGGTGGTCAG 59.507 37.037 0.00 0.00 0.00 3.51
2225 2365 7.329499 CCAAAATCAAAATATCATGGTGGTCA 58.671 34.615 0.00 0.00 0.00 4.02
2226 2366 6.258507 GCCAAAATCAAAATATCATGGTGGTC 59.741 38.462 0.00 0.00 0.00 4.02
2227 2367 6.114767 GCCAAAATCAAAATATCATGGTGGT 58.885 36.000 0.00 0.00 0.00 4.16
2228 2368 6.114089 TGCCAAAATCAAAATATCATGGTGG 58.886 36.000 0.00 0.00 0.00 4.61
2229 2369 7.042950 TCTGCCAAAATCAAAATATCATGGTG 58.957 34.615 0.00 0.00 0.00 4.17
2230 2370 7.185318 TCTGCCAAAATCAAAATATCATGGT 57.815 32.000 0.00 0.00 0.00 3.55
2231 2371 8.495361 TTTCTGCCAAAATCAAAATATCATGG 57.505 30.769 0.00 0.00 0.00 3.66
2238 2378 9.685828 CAATCAATTTTCTGCCAAAATCAAAAT 57.314 25.926 4.42 0.00 0.00 1.82
2239 2379 7.648510 GCAATCAATTTTCTGCCAAAATCAAAA 59.351 29.630 4.42 0.00 0.00 2.44
2240 2380 7.140048 GCAATCAATTTTCTGCCAAAATCAAA 58.860 30.769 4.42 0.00 0.00 2.69
2241 2381 6.670233 GCAATCAATTTTCTGCCAAAATCAA 58.330 32.000 4.42 0.00 0.00 2.57
2242 2382 6.243811 GCAATCAATTTTCTGCCAAAATCA 57.756 33.333 4.42 0.00 0.00 2.57
2254 2394 5.524646 CACTGTTGTGAAGGCAATCAATTTT 59.475 36.000 0.00 0.00 46.55 1.82
2275 2415 0.910338 ATCAGCTCCATGACAGCACT 59.090 50.000 16.33 0.00 39.56 4.40
2276 2416 1.015109 CATCAGCTCCATGACAGCAC 58.985 55.000 16.33 0.00 39.56 4.40
2283 2423 0.250381 GCCCTCTCATCAGCTCCATG 60.250 60.000 0.00 0.00 0.00 3.66
2289 2429 1.047596 TCCTCAGCCCTCTCATCAGC 61.048 60.000 0.00 0.00 0.00 4.26
2316 2456 4.337555 GCTAGTCCAGACATAAGTTCGGTA 59.662 45.833 0.00 0.00 0.00 4.02
2319 2459 4.096532 TCAGCTAGTCCAGACATAAGTTCG 59.903 45.833 0.00 0.00 0.00 3.95
2343 2483 3.072184 GGCTCATTGGACCTAGATCATGT 59.928 47.826 0.00 0.00 0.00 3.21
2425 2565 1.127567 TAGGTGACCCTGCAGCAGTT 61.128 55.000 21.26 7.58 42.67 3.16
2426 2566 1.536418 TAGGTGACCCTGCAGCAGT 60.536 57.895 21.26 7.87 42.67 4.40
2427 2567 1.220206 CTAGGTGACCCTGCAGCAG 59.780 63.158 16.23 16.23 42.67 4.24
2428 2568 2.293318 CCTAGGTGACCCTGCAGCA 61.293 63.158 8.66 0.00 42.67 4.41
2429 2569 1.341156 ATCCTAGGTGACCCTGCAGC 61.341 60.000 8.66 0.00 42.67 5.25
2430 2570 1.139853 GAATCCTAGGTGACCCTGCAG 59.860 57.143 9.08 6.78 42.67 4.41
2431 2571 1.204146 GAATCCTAGGTGACCCTGCA 58.796 55.000 9.08 0.00 42.67 4.41
2432 2572 1.139853 CAGAATCCTAGGTGACCCTGC 59.860 57.143 9.08 0.00 42.67 4.85
2433 2573 2.752030 TCAGAATCCTAGGTGACCCTG 58.248 52.381 9.08 10.19 42.67 4.45
2435 2575 2.224402 GCATCAGAATCCTAGGTGACCC 60.224 54.545 9.08 0.00 0.00 4.46
2437 2577 4.414337 AAGCATCAGAATCCTAGGTGAC 57.586 45.455 9.08 1.31 0.00 3.67
2438 2578 5.069648 CAGTAAGCATCAGAATCCTAGGTGA 59.930 44.000 9.08 5.40 0.00 4.02
2443 2586 4.443457 GCCACAGTAAGCATCAGAATCCTA 60.443 45.833 0.00 0.00 0.00 2.94
2450 2593 4.194640 ACAATAGCCACAGTAAGCATCAG 58.805 43.478 0.00 0.00 0.00 2.90
2462 2605 2.554032 ACTGAAGCACAACAATAGCCAC 59.446 45.455 0.00 0.00 0.00 5.01
2465 2608 6.438763 AGTAAAACTGAAGCACAACAATAGC 58.561 36.000 0.00 0.00 0.00 2.97
2481 2626 9.965824 CATGAATTAGTTTGGAACAGTAAAACT 57.034 29.630 11.62 11.62 44.23 2.66
2482 2627 9.959749 TCATGAATTAGTTTGGAACAGTAAAAC 57.040 29.630 0.00 0.00 42.39 2.43
2486 2631 9.295825 ACAATCATGAATTAGTTTGGAACAGTA 57.704 29.630 0.00 0.00 42.39 2.74
2493 2638 6.623486 TGAGCACAATCATGAATTAGTTTGG 58.377 36.000 0.00 0.00 0.00 3.28
2521 2760 9.970553 AATGATCATAGTATCAACCTGCATAAT 57.029 29.630 9.04 0.00 39.25 1.28
2522 2761 9.440773 GAATGATCATAGTATCAACCTGCATAA 57.559 33.333 9.04 0.00 39.25 1.90
2523 2762 8.596293 TGAATGATCATAGTATCAACCTGCATA 58.404 33.333 9.04 0.00 39.25 3.14
2524 2763 7.455891 TGAATGATCATAGTATCAACCTGCAT 58.544 34.615 9.04 0.00 39.25 3.96
2525 2764 6.829849 TGAATGATCATAGTATCAACCTGCA 58.170 36.000 9.04 0.00 39.25 4.41
2526 2765 6.370994 CCTGAATGATCATAGTATCAACCTGC 59.629 42.308 9.04 0.00 39.25 4.85
2712 2959 3.322254 TGACCTCAGAGAAGTCAAGGTTC 59.678 47.826 6.97 0.00 39.83 3.62
2733 2980 0.604073 TGGACATGCAGGCACAATTG 59.396 50.000 3.24 3.24 0.00 2.32
2741 2988 3.389925 ACACAAATTTGGACATGCAGG 57.610 42.857 21.74 0.00 0.00 4.85
2743 2990 4.501229 GGAGAACACAAATTTGGACATGCA 60.501 41.667 21.74 0.00 0.00 3.96
2744 2991 3.989817 GGAGAACACAAATTTGGACATGC 59.010 43.478 21.74 7.32 0.00 4.06
2765 3012 1.995376 ACCAAGTTTTAGGCACAGGG 58.005 50.000 0.00 0.00 0.00 4.45
2767 3014 7.174253 TCACTTAATACCAAGTTTTAGGCACAG 59.826 37.037 0.00 0.00 36.61 3.66
2780 3027 9.515226 AAGCAGAAACTATTCACTTAATACCAA 57.485 29.630 0.00 0.00 38.06 3.67
2794 3041 9.103861 GCAGTATCTAAAAGAAGCAGAAACTAT 57.896 33.333 0.00 0.00 0.00 2.12
3039 3289 3.081061 TCATCAAACTACCACCATGTGC 58.919 45.455 0.00 0.00 31.34 4.57
3123 3373 1.135859 GCACAGAAGCACACTGTATGC 60.136 52.381 2.14 2.14 45.15 3.14
3155 3501 7.926555 CAGGTTCAACTAGTCAAAGAAAGAGTA 59.073 37.037 0.00 0.00 0.00 2.59
3197 3543 4.085357 ACCACAAAAGCATGACAGTAGA 57.915 40.909 0.00 0.00 0.00 2.59
3199 3545 4.203226 TCAACCACAAAAGCATGACAGTA 58.797 39.130 0.00 0.00 0.00 2.74
3420 3824 0.397941 TGGCAAGTGCACTCTTAGCT 59.602 50.000 21.95 0.00 44.36 3.32
3468 3872 5.500234 CTTTCAAGACCCATGGAGTTATCA 58.500 41.667 15.22 0.00 0.00 2.15
3655 4066 2.343101 CGGTCCTTTTCATACGCTTCA 58.657 47.619 0.00 0.00 0.00 3.02
3718 4129 5.125100 TGAAACATAGAGCAAGCCAAAAG 57.875 39.130 0.00 0.00 0.00 2.27
3762 4173 7.821652 TCTACTGTTTTTGACAAATGACAACA 58.178 30.769 12.84 12.84 37.93 3.33
3763 4174 8.682128 TTCTACTGTTTTTGACAAATGACAAC 57.318 30.769 14.71 10.83 37.93 3.32
3833 4320 3.741344 ACGAAGTCAGTGTAACATTCTGC 59.259 43.478 0.00 0.00 34.50 4.26
3837 4324 7.956420 TCAATAACGAAGTCAGTGTAACATT 57.044 32.000 0.00 0.00 45.00 2.71
3853 4340 4.129380 TGCCAGGATCTTGATCAATAACG 58.871 43.478 8.96 0.00 0.00 3.18
3897 4387 8.755018 CAGAAAGTTTGGTTTTTGCTATTACAG 58.245 33.333 0.00 0.00 0.00 2.74
3920 4410 7.732025 TCACTTGGACACTCTTAATTAACAGA 58.268 34.615 7.40 0.00 0.00 3.41
3981 4471 5.296283 GCTCTGTGACAGAATATGCAGAATT 59.704 40.000 16.94 0.00 40.18 2.17
4008 4498 4.432712 ACAAAAGCTGTTGGTTAAAGCAG 58.567 39.130 20.72 0.00 39.47 4.24
4011 4501 7.170828 GGGAAATACAAAAGCTGTTGGTTAAAG 59.829 37.037 20.72 0.00 39.64 1.85
4107 4598 5.297547 TGAGTTGTAAGTCTGACAATGACC 58.702 41.667 10.88 0.00 38.94 4.02
4148 4639 2.286184 CGTTTCTTCAGTGGTTTGTCCG 60.286 50.000 0.00 0.00 39.52 4.79
4229 4720 1.603236 CGTCCTCTTCAGCTGCCTCT 61.603 60.000 9.47 0.00 0.00 3.69
4267 4758 6.150307 GGATTTCTTCTTCTTCTTCTTGGACC 59.850 42.308 0.00 0.00 0.00 4.46
4331 4822 5.614449 GCTCTTCTTTTTCTTCTTCTCGCTG 60.614 44.000 0.00 0.00 0.00 5.18
4396 4890 9.676195 CTGATTTCTTCTTCTTTTTCTTCTTCC 57.324 33.333 0.00 0.00 0.00 3.46
4434 4928 2.687566 GTCGGTCTCCATGGGGGT 60.688 66.667 12.98 0.00 38.11 4.95
4447 4941 1.560923 CTTCTTGGCAGATACGTCGG 58.439 55.000 0.00 0.00 0.00 4.79
4454 4948 4.990526 TCTTCTTTTCCTTCTTGGCAGAT 58.009 39.130 0.00 0.00 35.26 2.90
4469 4963 6.018343 CGTGCTTCTTCTTCTTCTTCTTCTTT 60.018 38.462 0.00 0.00 0.00 2.52
4477 4971 2.036475 TCAGCGTGCTTCTTCTTCTTCT 59.964 45.455 0.00 0.00 0.00 2.85
4478 4972 2.156697 GTCAGCGTGCTTCTTCTTCTTC 59.843 50.000 0.00 0.00 0.00 2.87
4479 4973 2.139118 GTCAGCGTGCTTCTTCTTCTT 58.861 47.619 0.00 0.00 0.00 2.52
4507 5001 4.944372 CGCCGTATCTCCGTGCCC 62.944 72.222 0.00 0.00 0.00 5.36
4655 5154 2.424956 CAGCATTGGGCCTCTTAAAGTC 59.575 50.000 4.53 0.00 46.50 3.01
4690 5189 6.983307 ACAGAATGAACATACTAGCAGATGTC 59.017 38.462 6.11 2.58 39.69 3.06
4772 5271 5.067936 CCTCATCCCTGTACAGTAAGTGTAG 59.932 48.000 21.18 9.35 42.56 2.74
4785 5289 1.625818 GAGTGTTGTCCTCATCCCTGT 59.374 52.381 0.00 0.00 0.00 4.00
4794 5298 4.281182 ACAAATCTAGTCGAGTGTTGTCCT 59.719 41.667 2.10 0.00 31.67 3.85
4796 5300 5.905903 CAACAAATCTAGTCGAGTGTTGTC 58.094 41.667 2.10 0.00 41.76 3.18
4806 5310 6.020678 GTGCAACAACAACAACAAATCTAGTC 60.021 38.462 0.00 0.00 36.32 2.59
4838 5351 6.490566 ACAACAAGAAACAACGTCTAGTTT 57.509 33.333 11.86 11.86 42.02 2.66
4847 5360 3.370366 TGCATGCAACAACAAGAAACAAC 59.630 39.130 20.30 0.00 0.00 3.32
4921 5440 5.827797 ACACAAAGAACAGCCAAGAAAGATA 59.172 36.000 0.00 0.00 0.00 1.98
4988 5767 4.677378 CGCATTACTAAGAAGATGTCGGAG 59.323 45.833 0.00 0.00 0.00 4.63
4997 5776 8.948853 TTCAAAACAATCGCATTACTAAGAAG 57.051 30.769 0.00 0.00 0.00 2.85
5038 5818 7.093465 ACGTTCTTATATTTTGAGACAGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
5039 5819 7.042335 ACGTTCTTATATTTTGAGACAGAGGG 58.958 38.462 0.00 0.00 0.00 4.30
5040 5820 8.480643 AACGTTCTTATATTTTGAGACAGAGG 57.519 34.615 0.00 0.00 0.00 3.69
5073 5853 6.963049 AGAACGTTTTTGGCACTAGTATAG 57.037 37.500 0.46 0.00 46.50 1.31
5075 5855 7.916914 ATAAGAACGTTTTTGGCACTAGTAT 57.083 32.000 13.87 0.00 0.00 2.12
5076 5856 9.439500 AATATAAGAACGTTTTTGGCACTAGTA 57.561 29.630 13.87 0.00 0.00 1.82
5077 5857 7.916914 ATATAAGAACGTTTTTGGCACTAGT 57.083 32.000 13.87 0.00 0.00 2.57
5080 5860 8.188139 CCATAATATAAGAACGTTTTTGGCACT 58.812 33.333 13.87 0.00 0.00 4.40
5081 5861 7.434013 CCCATAATATAAGAACGTTTTTGGCAC 59.566 37.037 13.87 0.00 0.00 5.01
5082 5862 7.339721 TCCCATAATATAAGAACGTTTTTGGCA 59.660 33.333 13.87 0.01 0.00 4.92
5083 5863 7.646526 GTCCCATAATATAAGAACGTTTTTGGC 59.353 37.037 13.87 0.00 0.00 4.52
5084 5864 7.853929 CGTCCCATAATATAAGAACGTTTTTGG 59.146 37.037 13.87 5.54 0.00 3.28
5085 5865 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
5086 5866 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
5087 5867 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
5088 5868 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
5089 5869 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
5090 5870 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
5091 5871 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
5092 5872 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
5093 5873 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
5094 5874 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5095 5875 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5096 5876 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
5097 5877 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5098 5878 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5099 5879 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
5100 5880 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
5101 5881 4.687262 ATATACTCCCTCCGTCCCATAA 57.313 45.455 0.00 0.00 0.00 1.90
5102 5882 4.687262 AATATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
5103 5883 3.562108 AATATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
5104 5884 4.687262 ATAATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
5105 5885 6.097981 CCTTTATAATATACTCCCTCCGTCCC 59.902 46.154 0.00 0.00 0.00 4.46
5106 5886 6.666980 ACCTTTATAATATACTCCCTCCGTCC 59.333 42.308 0.00 0.00 0.00 4.79
5107 5887 7.614974 AGACCTTTATAATATACTCCCTCCGTC 59.385 40.741 0.00 0.00 0.00 4.79
5108 5888 7.396623 CAGACCTTTATAATATACTCCCTCCGT 59.603 40.741 0.00 0.00 0.00 4.69
5109 5889 7.396623 ACAGACCTTTATAATATACTCCCTCCG 59.603 40.741 0.00 0.00 0.00 4.63
5110 5890 8.667592 ACAGACCTTTATAATATACTCCCTCC 57.332 38.462 0.00 0.00 0.00 4.30
5112 5892 9.544579 GGTACAGACCTTTATAATATACTCCCT 57.455 37.037 0.00 0.00 43.16 4.20
5113 5893 8.465201 CGGTACAGACCTTTATAATATACTCCC 58.535 40.741 0.00 0.00 44.46 4.30
5114 5894 7.972832 GCGGTACAGACCTTTATAATATACTCC 59.027 40.741 0.00 0.00 44.46 3.85
5115 5895 8.517878 TGCGGTACAGACCTTTATAATATACTC 58.482 37.037 0.00 0.00 44.46 2.59
5116 5896 8.413309 TGCGGTACAGACCTTTATAATATACT 57.587 34.615 0.00 0.00 44.46 2.12
5117 5897 9.649167 ATTGCGGTACAGACCTTTATAATATAC 57.351 33.333 0.00 0.00 44.46 1.47
5119 5899 8.999431 CAATTGCGGTACAGACCTTTATAATAT 58.001 33.333 0.00 0.00 44.46 1.28
5120 5900 8.205512 TCAATTGCGGTACAGACCTTTATAATA 58.794 33.333 0.00 0.00 44.46 0.98
5184 5966 5.578727 GCAGAAATATCGTCATCAGGTATCC 59.421 44.000 0.00 0.00 0.00 2.59
5210 5995 4.640771 TTGACCATAAGCCTCAGAAAGT 57.359 40.909 0.00 0.00 0.00 2.66
5391 6179 2.237143 TCAACCTCTGGCTGATTGGTAG 59.763 50.000 5.87 0.00 0.00 3.18
5437 6226 3.023832 ACCTACCTAAACCATGCAATGC 58.976 45.455 0.00 0.00 44.97 3.56
5440 6229 4.591929 GGTTACCTACCTAAACCATGCAA 58.408 43.478 0.00 0.00 44.10 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.