Multiple sequence alignment - TraesCS2B01G138900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G138900 chr2B 100.000 4409 0 0 1 4409 105905255 105909663 0.000000e+00 8142
1 TraesCS2B01G138900 chr2A 90.381 2339 136 45 740 3029 69322112 69324410 0.000000e+00 2990
2 TraesCS2B01G138900 chr2A 93.929 840 30 16 3587 4407 69325004 69325841 0.000000e+00 1249
3 TraesCS2B01G138900 chr2A 90.803 598 39 11 3076 3661 69324421 69325014 0.000000e+00 785
4 TraesCS2B01G138900 chr2A 84.114 491 34 21 77 557 69321626 69322082 6.770000e-118 435
5 TraesCS2B01G138900 chr2D 92.773 1356 53 10 977 2316 69502063 69503389 0.000000e+00 1919
6 TraesCS2B01G138900 chr2D 92.541 1354 70 10 3076 4409 69503996 69505338 0.000000e+00 1912
7 TraesCS2B01G138900 chr2D 90.446 628 32 11 2404 3029 69503385 69503986 0.000000e+00 802
8 TraesCS2B01G138900 chr2D 91.781 219 11 2 1 219 69501306 69501517 9.270000e-77 298
9 TraesCS2B01G138900 chr4B 85.353 1106 110 19 750 1830 527926189 527925111 0.000000e+00 1098
10 TraesCS2B01G138900 chr4B 94.286 175 8 2 588 761 658178162 658178335 2.610000e-67 267
11 TraesCS2B01G138900 chr4B 93.296 179 8 4 579 754 143898158 143897981 1.220000e-65 261
12 TraesCS2B01G138900 chr4B 84.951 206 15 9 361 557 527926427 527926229 1.250000e-45 195
13 TraesCS2B01G138900 chr5A 87.558 860 80 8 966 1818 274973400 274974239 0.000000e+00 970
14 TraesCS2B01G138900 chr5A 91.327 196 17 0 2403 2598 423175592 423175397 7.270000e-68 268
15 TraesCS2B01G138900 chr5A 95.266 169 7 1 586 753 566272985 566272817 2.610000e-67 267
16 TraesCS2B01G138900 chr5A 93.785 177 8 3 588 762 327433408 327433233 3.380000e-66 263
17 TraesCS2B01G138900 chr5A 82.787 244 19 6 750 971 274973134 274973376 3.480000e-46 196
18 TraesCS2B01G138900 chr5A 83.654 208 20 9 361 557 274972890 274973094 2.710000e-42 183
19 TraesCS2B01G138900 chr7B 85.253 868 96 14 972 1830 257238700 257237856 0.000000e+00 865
20 TraesCS2B01G138900 chr7B 82.677 254 21 10 740 971 257238982 257238730 2.080000e-48 204
21 TraesCS2B01G138900 chr7B 82.843 204 22 7 370 563 257239206 257239006 2.110000e-38 171
22 TraesCS2B01G138900 chr3A 94.767 172 7 2 583 753 36309948 36310118 2.610000e-67 267
23 TraesCS2B01G138900 chr3A 95.266 169 7 1 587 754 602023223 602023055 2.610000e-67 267
24 TraesCS2B01G138900 chr3A 94.737 171 8 1 585 754 97478183 97478353 9.400000e-67 265
25 TraesCS2B01G138900 chr5B 90.816 196 18 0 2403 2598 377535832 377535637 3.380000e-66 263
26 TraesCS2B01G138900 chr5B 81.347 193 35 1 2406 2598 694256822 694256631 5.900000e-34 156
27 TraesCS2B01G138900 chr5B 80.829 193 35 2 2406 2598 694251596 694251406 2.750000e-32 150
28 TraesCS2B01G138900 chr1D 93.296 179 10 2 582 758 391279055 391279233 3.380000e-66 263
29 TraesCS2B01G138900 chr4A 92.818 181 10 3 584 762 464567601 464567422 4.370000e-65 259
30 TraesCS2B01G138900 chr5D 89.796 196 20 0 2403 2598 325086147 325085952 7.320000e-63 252
31 TraesCS2B01G138900 chr5D 82.990 194 33 0 2405 2598 556474403 556474596 4.530000e-40 176
32 TraesCS2B01G138900 chr5D 80.513 195 37 1 2403 2597 556471857 556472050 9.880000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G138900 chr2B 105905255 105909663 4408 False 8142.000000 8142 100.000000 1 4409 1 chr2B.!!$F1 4408
1 TraesCS2B01G138900 chr2A 69321626 69325841 4215 False 1364.750000 2990 89.806750 77 4407 4 chr2A.!!$F1 4330
2 TraesCS2B01G138900 chr2D 69501306 69505338 4032 False 1232.750000 1919 91.885250 1 4409 4 chr2D.!!$F1 4408
3 TraesCS2B01G138900 chr4B 527925111 527926427 1316 True 646.500000 1098 85.152000 361 1830 2 chr4B.!!$R2 1469
4 TraesCS2B01G138900 chr5A 274972890 274974239 1349 False 449.666667 970 84.666333 361 1818 3 chr5A.!!$F1 1457
5 TraesCS2B01G138900 chr7B 257237856 257239206 1350 True 413.333333 865 83.591000 370 1830 3 chr7B.!!$R1 1460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 611 0.033920 CCTTCCCCTTTTGCAGTTGC 59.966 55.0 0.0 0.0 42.50 4.17 F
2349 2636 0.108424 CTCCTCTGCTCTGGTTTCCG 60.108 60.0 0.0 0.0 0.00 4.30 F
2384 2671 0.531532 CCATTGATCCGAAGCTCGCT 60.532 55.0 0.0 0.0 38.82 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 2685 0.035725 CTGAACTCCTCCTGCATGCA 60.036 55.0 21.29 21.29 0.0 3.96 R
3284 3581 0.038709 GATCTCATCTTCCCGGAGCG 60.039 60.0 0.73 0.00 0.0 5.03 R
4100 4478 0.963962 TTCCTTACGACAAGACCGCT 59.036 50.0 0.00 0.00 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.532155 ATCTCCGGGCAGACTCGC 61.532 66.667 0.00 0.00 0.00 5.03
158 159 2.476821 CGTAACTGGTTTCTGTTCCGT 58.523 47.619 0.00 0.00 36.61 4.69
159 160 3.552684 CCGTAACTGGTTTCTGTTCCGTA 60.553 47.826 0.00 0.00 34.28 4.02
160 161 3.426525 CGTAACTGGTTTCTGTTCCGTAC 59.573 47.826 0.00 0.00 36.61 3.67
161 162 3.832615 AACTGGTTTCTGTTCCGTACT 57.167 42.857 0.00 0.00 30.76 2.73
162 163 4.942761 AACTGGTTTCTGTTCCGTACTA 57.057 40.909 0.00 0.00 30.76 1.82
163 164 4.248691 ACTGGTTTCTGTTCCGTACTAC 57.751 45.455 0.00 0.00 0.00 2.73
188 189 5.598769 ACTACGTTACTGCTCTGTTTCTTT 58.401 37.500 0.00 0.00 0.00 2.52
198 199 3.316308 GCTCTGTTTCTTTGCTTCCTTGA 59.684 43.478 0.00 0.00 0.00 3.02
238 244 1.009829 GAGCCATGAATCGCGAAACT 58.990 50.000 15.24 0.00 0.00 2.66
239 245 0.729116 AGCCATGAATCGCGAAACTG 59.271 50.000 15.24 8.62 0.00 3.16
293 299 2.105528 CCGCAAATCATGGCTGGC 59.894 61.111 0.00 0.00 0.00 4.85
295 301 2.105528 GCAAATCATGGCTGGCCG 59.894 61.111 7.14 0.00 39.42 6.13
359 374 1.153745 CACCGCCGGAGAAGAAGAG 60.154 63.158 11.71 0.00 0.00 2.85
408 440 4.827087 CACCGCAGCAGATCCGCT 62.827 66.667 0.00 0.00 45.21 5.52
421 454 1.599071 GATCCGCTGATTTGCAATCGA 59.401 47.619 0.00 0.00 0.00 3.59
448 483 6.445357 AAACGAAATTCCACCGCTAATTAT 57.555 33.333 0.00 0.00 0.00 1.28
449 484 7.556733 AAACGAAATTCCACCGCTAATTATA 57.443 32.000 0.00 0.00 0.00 0.98
482 522 6.901081 AAAAGAATCTGTTTAACCTCTGGG 57.099 37.500 0.00 0.00 38.88 4.45
495 548 0.111253 CTCTGGGTTCAGGGTTTGCT 59.889 55.000 0.00 0.00 41.23 3.91
496 549 0.555769 TCTGGGTTCAGGGTTTGCTT 59.444 50.000 0.00 0.00 41.23 3.91
497 550 1.063266 TCTGGGTTCAGGGTTTGCTTT 60.063 47.619 0.00 0.00 41.23 3.51
498 551 1.069049 CTGGGTTCAGGGTTTGCTTTG 59.931 52.381 0.00 0.00 37.36 2.77
557 611 0.033920 CCTTCCCCTTTTGCAGTTGC 59.966 55.000 0.00 0.00 42.50 4.17
559 613 1.000171 CTTCCCCTTTTGCAGTTGCTC 60.000 52.381 5.62 0.00 42.66 4.26
563 617 1.269413 CCCTTTTGCAGTTGCTCTGTG 60.269 52.381 5.62 0.00 45.23 3.66
580 646 1.815003 TGAATGCATGCGACGGAGG 60.815 57.895 14.09 0.00 0.00 4.30
588 654 0.821517 ATGCGACGGAGGTGAACATA 59.178 50.000 0.00 0.00 0.00 2.29
589 655 0.108992 TGCGACGGAGGTGAACATAC 60.109 55.000 0.00 0.00 0.00 2.39
590 656 0.172803 GCGACGGAGGTGAACATACT 59.827 55.000 0.00 0.00 0.00 2.12
591 657 1.403780 GCGACGGAGGTGAACATACTT 60.404 52.381 0.00 0.00 0.00 2.24
592 658 2.527100 CGACGGAGGTGAACATACTTC 58.473 52.381 0.00 0.00 0.00 3.01
594 660 2.496470 GACGGAGGTGAACATACTTCCT 59.504 50.000 5.68 0.00 42.78 3.36
595 661 2.496470 ACGGAGGTGAACATACTTCCTC 59.504 50.000 5.68 0.00 42.78 3.71
597 663 3.166489 GAGGTGAACATACTTCCTCCG 57.834 52.381 0.00 0.00 38.81 4.63
598 664 2.496470 GAGGTGAACATACTTCCTCCGT 59.504 50.000 0.00 0.00 38.81 4.69
599 665 2.904434 AGGTGAACATACTTCCTCCGTT 59.096 45.455 0.00 0.00 0.00 4.44
600 666 3.056035 AGGTGAACATACTTCCTCCGTTC 60.056 47.826 0.00 0.00 37.16 3.95
601 667 3.259902 GTGAACATACTTCCTCCGTTCC 58.740 50.000 0.00 0.00 36.07 3.62
602 668 3.056035 GTGAACATACTTCCTCCGTTCCT 60.056 47.826 0.00 0.00 36.07 3.36
603 669 4.159135 GTGAACATACTTCCTCCGTTCCTA 59.841 45.833 0.00 0.00 36.07 2.94
604 670 4.773674 TGAACATACTTCCTCCGTTCCTAA 59.226 41.667 0.00 0.00 36.07 2.69
605 671 5.246656 TGAACATACTTCCTCCGTTCCTAAA 59.753 40.000 0.00 0.00 36.07 1.85
606 672 5.952347 ACATACTTCCTCCGTTCCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
607 673 7.124599 TGAACATACTTCCTCCGTTCCTAAATA 59.875 37.037 0.00 0.00 36.07 1.40
608 674 6.814043 ACATACTTCCTCCGTTCCTAAATAC 58.186 40.000 0.00 0.00 0.00 1.89
609 675 6.610425 ACATACTTCCTCCGTTCCTAAATACT 59.390 38.462 0.00 0.00 0.00 2.12
610 676 7.125356 ACATACTTCCTCCGTTCCTAAATACTT 59.875 37.037 0.00 0.00 0.00 2.24
611 677 5.731591 ACTTCCTCCGTTCCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
612 678 5.247792 ACTTCCTCCGTTCCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
613 679 5.334724 TCCTCCGTTCCTAAATACTTGTC 57.665 43.478 0.00 0.00 0.00 3.18
614 680 5.021458 TCCTCCGTTCCTAAATACTTGTCT 58.979 41.667 0.00 0.00 0.00 3.41
615 681 5.482878 TCCTCCGTTCCTAAATACTTGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
616 682 6.013984 TCCTCCGTTCCTAAATACTTGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
617 683 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
618 684 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
619 685 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
620 686 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
621 687 8.033626 CCGTTCCTAAATACTTGTCTTTCTAGT 58.966 37.037 0.00 0.00 36.28 2.57
622 688 9.074443 CGTTCCTAAATACTTGTCTTTCTAGTC 57.926 37.037 0.00 0.00 34.37 2.59
623 689 9.924650 GTTCCTAAATACTTGTCTTTCTAGTCA 57.075 33.333 0.00 0.00 34.37 3.41
631 697 9.778741 ATACTTGTCTTTCTAGTCATTTCAACA 57.221 29.630 0.00 0.00 34.37 3.33
632 698 8.506168 ACTTGTCTTTCTAGTCATTTCAACAA 57.494 30.769 0.00 0.00 0.00 2.83
633 699 8.616076 ACTTGTCTTTCTAGTCATTTCAACAAG 58.384 33.333 0.00 0.00 43.26 3.16
634 700 8.506168 TTGTCTTTCTAGTCATTTCAACAAGT 57.494 30.769 0.00 0.00 0.00 3.16
635 701 7.919690 TGTCTTTCTAGTCATTTCAACAAGTG 58.080 34.615 0.00 0.00 0.00 3.16
636 702 7.768582 TGTCTTTCTAGTCATTTCAACAAGTGA 59.231 33.333 0.00 0.00 0.00 3.41
637 703 8.064814 GTCTTTCTAGTCATTTCAACAAGTGAC 58.935 37.037 2.95 2.95 45.33 3.67
645 711 7.227461 GTCATTTCAACAAGTGACTACATACG 58.773 38.462 3.77 0.00 42.95 3.06
646 712 7.115805 GTCATTTCAACAAGTGACTACATACGA 59.884 37.037 0.00 0.00 42.95 3.43
647 713 7.654116 TCATTTCAACAAGTGACTACATACGAA 59.346 33.333 0.00 0.00 35.39 3.85
648 714 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
649 715 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
650 716 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
651 717 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
652 718 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
653 719 5.405571 ACAAGTGACTACATACGAAGCAAAG 59.594 40.000 0.00 0.00 0.00 2.77
654 720 5.135508 AGTGACTACATACGAAGCAAAGT 57.864 39.130 0.00 0.00 0.00 2.66
655 721 4.923871 AGTGACTACATACGAAGCAAAGTG 59.076 41.667 0.00 0.00 0.00 3.16
656 722 4.921515 GTGACTACATACGAAGCAAAGTGA 59.078 41.667 0.00 0.00 0.00 3.41
657 723 5.061064 GTGACTACATACGAAGCAAAGTGAG 59.939 44.000 0.00 0.00 0.00 3.51
658 724 5.135508 ACTACATACGAAGCAAAGTGAGT 57.864 39.130 0.00 0.00 0.00 3.41
659 725 4.923871 ACTACATACGAAGCAAAGTGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
660 726 3.990092 ACATACGAAGCAAAGTGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
661 727 4.377021 ACATACGAAGCAAAGTGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
662 728 4.997395 ACATACGAAGCAAAGTGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
663 729 5.120830 ACATACGAAGCAAAGTGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
664 730 3.733337 ACGAAGCAAAGTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
665 731 4.883083 ACGAAGCAAAGTGAGTGAATCTA 58.117 39.130 0.00 0.00 0.00 1.98
666 732 4.686554 ACGAAGCAAAGTGAGTGAATCTAC 59.313 41.667 0.00 0.00 0.00 2.59
667 733 4.686091 CGAAGCAAAGTGAGTGAATCTACA 59.314 41.667 0.00 0.00 0.00 2.74
668 734 5.349817 CGAAGCAAAGTGAGTGAATCTACAT 59.650 40.000 0.00 0.00 0.00 2.29
669 735 6.128445 CGAAGCAAAGTGAGTGAATCTACATT 60.128 38.462 0.00 0.00 0.00 2.71
670 736 6.734104 AGCAAAGTGAGTGAATCTACATTC 57.266 37.500 0.00 0.00 39.24 2.67
671 737 5.645497 AGCAAAGTGAGTGAATCTACATTCC 59.355 40.000 0.00 0.00 38.14 3.01
672 738 5.412594 GCAAAGTGAGTGAATCTACATTCCA 59.587 40.000 0.00 0.00 38.14 3.53
673 739 6.072508 GCAAAGTGAGTGAATCTACATTCCAA 60.073 38.462 0.00 0.00 38.14 3.53
674 740 7.522073 GCAAAGTGAGTGAATCTACATTCCAAA 60.522 37.037 0.00 0.00 38.14 3.28
675 741 8.352201 CAAAGTGAGTGAATCTACATTCCAAAA 58.648 33.333 0.00 0.00 38.14 2.44
676 742 8.641498 AAGTGAGTGAATCTACATTCCAAAAT 57.359 30.769 0.00 0.00 38.14 1.82
677 743 9.739276 AAGTGAGTGAATCTACATTCCAAAATA 57.261 29.630 0.00 0.00 38.14 1.40
678 744 9.911788 AGTGAGTGAATCTACATTCCAAAATAT 57.088 29.630 0.00 0.00 38.14 1.28
679 745 9.941664 GTGAGTGAATCTACATTCCAAAATATG 57.058 33.333 0.00 0.00 38.14 1.78
680 746 9.685276 TGAGTGAATCTACATTCCAAAATATGT 57.315 29.630 0.00 0.00 38.14 2.29
682 748 9.911788 AGTGAATCTACATTCCAAAATATGTCT 57.088 29.630 0.00 0.00 38.14 3.41
693 759 8.601845 TTCCAAAATATGTCTACATACATCCG 57.398 34.615 4.98 0.00 41.15 4.18
694 760 7.732025 TCCAAAATATGTCTACATACATCCGT 58.268 34.615 4.98 0.00 41.15 4.69
695 761 8.862085 TCCAAAATATGTCTACATACATCCGTA 58.138 33.333 4.98 0.00 41.15 4.02
696 762 9.653287 CCAAAATATGTCTACATACATCCGTAT 57.347 33.333 4.98 0.00 41.15 3.06
711 777 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
712 778 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
713 779 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
714 780 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
715 781 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
716 782 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
717 783 8.879759 CCGTATGTAGTAGTCATTTGAAATGTT 58.120 33.333 16.62 9.61 0.00 2.71
743 809 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
744 810 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
745 811 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
746 812 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
747 813 6.583562 AGACAAATATTTAGGAACGGAGGAG 58.416 40.000 0.00 0.00 0.00 3.69
748 814 6.156429 AGACAAATATTTAGGAACGGAGGAGT 59.844 38.462 0.00 0.00 0.00 3.85
749 815 7.343833 AGACAAATATTTAGGAACGGAGGAGTA 59.656 37.037 0.00 0.00 0.00 2.59
750 816 7.270779 ACAAATATTTAGGAACGGAGGAGTAC 58.729 38.462 0.00 0.00 0.00 2.73
751 817 7.093201 ACAAATATTTAGGAACGGAGGAGTACA 60.093 37.037 0.00 0.00 0.00 2.90
752 818 7.613551 AATATTTAGGAACGGAGGAGTACAT 57.386 36.000 0.00 0.00 0.00 2.29
753 819 4.996788 TTTAGGAACGGAGGAGTACATC 57.003 45.455 0.00 0.00 0.00 3.06
754 820 2.526888 AGGAACGGAGGAGTACATCA 57.473 50.000 0.00 0.00 0.00 3.07
755 821 2.100989 AGGAACGGAGGAGTACATCAC 58.899 52.381 0.00 0.00 0.00 3.06
756 822 1.822990 GGAACGGAGGAGTACATCACA 59.177 52.381 0.00 0.00 0.00 3.58
757 823 2.232941 GGAACGGAGGAGTACATCACAA 59.767 50.000 0.00 0.00 0.00 3.33
758 824 3.251571 GAACGGAGGAGTACATCACAAC 58.748 50.000 0.00 0.00 0.00 3.32
759 825 1.549170 ACGGAGGAGTACATCACAACC 59.451 52.381 0.00 0.00 0.00 3.77
760 826 1.548719 CGGAGGAGTACATCACAACCA 59.451 52.381 0.00 0.00 0.00 3.67
761 827 2.028476 CGGAGGAGTACATCACAACCAA 60.028 50.000 0.00 0.00 0.00 3.67
762 828 3.369471 CGGAGGAGTACATCACAACCAAT 60.369 47.826 0.00 0.00 0.00 3.16
847 958 2.104170 TGGAACGGGCTTCAAAACTTT 58.896 42.857 0.00 0.00 0.00 2.66
919 1031 1.154836 CTGCTTCGTTTGCGTCGAC 60.155 57.895 5.18 5.18 37.05 4.20
975 1129 0.687354 AGGCCTGAACATCACGAGTT 59.313 50.000 3.11 0.00 0.00 3.01
989 1143 1.268899 ACGAGTTCAGACTGGGTAACG 59.731 52.381 1.81 5.68 36.08 3.18
994 1148 2.380084 TCAGACTGGGTAACGCAATC 57.620 50.000 1.81 0.00 37.60 2.67
1449 1626 2.766400 CCTCTCCGAGCACGAGGAC 61.766 68.421 4.70 0.00 42.66 3.85
1511 1688 1.004918 ACCAGCTCCAGTACGCAAC 60.005 57.895 0.00 0.00 0.00 4.17
1566 1753 7.977853 CCGATGAAGGATGAATTTTCTTGATTT 59.022 33.333 0.00 0.00 0.00 2.17
1576 1763 9.798994 ATGAATTTTCTTGATTTATCTGACTGC 57.201 29.630 0.00 0.00 0.00 4.40
1620 1807 1.448540 CGGAGGCGTTCAAGCAGAT 60.449 57.895 0.00 0.00 39.27 2.90
1951 2141 4.908877 GAGGAGTACGCGCGGCTC 62.909 72.222 33.41 33.41 0.00 4.70
2073 2263 3.665226 CGCGGAGGAGATCGGGAG 61.665 72.222 0.00 0.00 40.92 4.30
2200 2390 4.479993 AGCAGGGAGGCGATGCAC 62.480 66.667 0.00 0.00 42.45 4.57
2202 2392 2.046023 CAGGGAGGCGATGCACAA 60.046 61.111 0.00 0.00 0.00 3.33
2314 2601 3.531207 TCGATCCTCCAGGCGCAG 61.531 66.667 10.83 0.00 34.44 5.18
2315 2602 4.598894 CGATCCTCCAGGCGCAGG 62.599 72.222 10.83 11.25 34.44 4.85
2316 2603 3.474570 GATCCTCCAGGCGCAGGT 61.475 66.667 10.83 0.00 34.44 4.00
2317 2604 3.453070 GATCCTCCAGGCGCAGGTC 62.453 68.421 10.83 4.20 34.44 3.85
2320 2607 4.154347 CTCCAGGCGCAGGTCCTC 62.154 72.222 10.83 0.00 0.00 3.71
2323 2610 4.154347 CAGGCGCAGGTCCTCCTC 62.154 72.222 10.83 0.00 43.07 3.71
2324 2611 4.390556 AGGCGCAGGTCCTCCTCT 62.391 66.667 10.83 0.00 43.07 3.69
2325 2612 3.394836 GGCGCAGGTCCTCCTCTT 61.395 66.667 10.83 0.00 43.07 2.85
2326 2613 2.185608 GCGCAGGTCCTCCTCTTC 59.814 66.667 0.30 0.00 43.07 2.87
2327 2614 2.896443 CGCAGGTCCTCCTCTTCC 59.104 66.667 0.00 0.00 43.07 3.46
2328 2615 2.726351 CGCAGGTCCTCCTCTTCCC 61.726 68.421 0.00 0.00 43.07 3.97
2329 2616 2.371259 GCAGGTCCTCCTCTTCCCC 61.371 68.421 0.00 0.00 43.07 4.81
2330 2617 1.690985 CAGGTCCTCCTCTTCCCCC 60.691 68.421 0.00 0.00 43.07 5.40
2331 2618 1.869452 AGGTCCTCCTCTTCCCCCT 60.869 63.158 0.00 0.00 40.58 4.79
2332 2619 1.383386 GGTCCTCCTCTTCCCCCTC 60.383 68.421 0.00 0.00 0.00 4.30
2333 2620 1.383386 GTCCTCCTCTTCCCCCTCC 60.383 68.421 0.00 0.00 0.00 4.30
2334 2621 1.550374 TCCTCCTCTTCCCCCTCCT 60.550 63.158 0.00 0.00 0.00 3.69
2335 2622 1.074850 CCTCCTCTTCCCCCTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
2336 2623 1.598856 CCTCCTCTTCCCCCTCCTCT 61.599 65.000 0.00 0.00 0.00 3.69
2337 2624 0.398381 CTCCTCTTCCCCCTCCTCTG 60.398 65.000 0.00 0.00 0.00 3.35
2338 2625 2.069430 CCTCTTCCCCCTCCTCTGC 61.069 68.421 0.00 0.00 0.00 4.26
2339 2626 1.002792 CTCTTCCCCCTCCTCTGCT 59.997 63.158 0.00 0.00 0.00 4.24
2340 2627 1.002274 TCTTCCCCCTCCTCTGCTC 59.998 63.158 0.00 0.00 0.00 4.26
2341 2628 1.002792 CTTCCCCCTCCTCTGCTCT 59.997 63.158 0.00 0.00 0.00 4.09
2342 2629 1.306482 TTCCCCCTCCTCTGCTCTG 60.306 63.158 0.00 0.00 0.00 3.35
2343 2630 2.767496 CCCCCTCCTCTGCTCTGG 60.767 72.222 0.00 0.00 0.00 3.86
2344 2631 2.040278 CCCCTCCTCTGCTCTGGT 59.960 66.667 0.00 0.00 0.00 4.00
2345 2632 1.614824 CCCCTCCTCTGCTCTGGTT 60.615 63.158 0.00 0.00 0.00 3.67
2346 2633 1.204113 CCCCTCCTCTGCTCTGGTTT 61.204 60.000 0.00 0.00 0.00 3.27
2347 2634 0.251634 CCCTCCTCTGCTCTGGTTTC 59.748 60.000 0.00 0.00 0.00 2.78
2348 2635 0.251634 CCTCCTCTGCTCTGGTTTCC 59.748 60.000 0.00 0.00 0.00 3.13
2349 2636 0.108424 CTCCTCTGCTCTGGTTTCCG 60.108 60.000 0.00 0.00 0.00 4.30
2350 2637 0.541998 TCCTCTGCTCTGGTTTCCGA 60.542 55.000 0.00 0.00 0.00 4.55
2351 2638 0.108424 CCTCTGCTCTGGTTTCCGAG 60.108 60.000 0.00 0.00 0.00 4.63
2352 2639 0.891373 CTCTGCTCTGGTTTCCGAGA 59.109 55.000 10.16 0.00 0.00 4.04
2353 2640 0.603569 TCTGCTCTGGTTTCCGAGAC 59.396 55.000 10.16 0.00 0.00 3.36
2354 2641 0.734253 CTGCTCTGGTTTCCGAGACG 60.734 60.000 10.16 0.00 0.00 4.18
2355 2642 1.289380 GCTCTGGTTTCCGAGACGT 59.711 57.895 0.00 0.00 0.00 4.34
2356 2643 1.009389 GCTCTGGTTTCCGAGACGTG 61.009 60.000 0.00 0.00 0.00 4.49
2357 2644 1.006571 TCTGGTTTCCGAGACGTGC 60.007 57.895 0.00 0.00 0.00 5.34
2358 2645 1.006102 CTGGTTTCCGAGACGTGCT 60.006 57.895 0.00 0.00 0.00 4.40
2359 2646 1.284982 CTGGTTTCCGAGACGTGCTG 61.285 60.000 0.00 0.00 0.00 4.41
2360 2647 1.006571 GGTTTCCGAGACGTGCTGA 60.007 57.895 0.00 0.00 0.00 4.26
2361 2648 1.009389 GGTTTCCGAGACGTGCTGAG 61.009 60.000 0.00 0.00 0.00 3.35
2362 2649 1.372997 TTTCCGAGACGTGCTGAGC 60.373 57.895 0.00 0.00 0.00 4.26
2363 2650 2.765250 TTTCCGAGACGTGCTGAGCC 62.765 60.000 0.23 0.00 0.00 4.70
2369 2656 4.704833 ACGTGCTGAGCCGCCATT 62.705 61.111 13.73 0.00 0.00 3.16
2370 2657 4.170062 CGTGCTGAGCCGCCATTG 62.170 66.667 0.23 0.00 0.00 2.82
2371 2658 2.747460 GTGCTGAGCCGCCATTGA 60.747 61.111 0.23 0.00 0.00 2.57
2372 2659 2.117156 GTGCTGAGCCGCCATTGAT 61.117 57.895 0.23 0.00 0.00 2.57
2373 2660 1.820906 TGCTGAGCCGCCATTGATC 60.821 57.895 0.23 0.00 0.00 2.92
2374 2661 2.550101 GCTGAGCCGCCATTGATCC 61.550 63.158 0.00 0.00 0.00 3.36
2375 2662 2.203056 TGAGCCGCCATTGATCCG 60.203 61.111 0.00 0.00 0.00 4.18
2376 2663 2.108976 GAGCCGCCATTGATCCGA 59.891 61.111 0.00 0.00 0.00 4.55
2377 2664 1.523711 GAGCCGCCATTGATCCGAA 60.524 57.895 0.00 0.00 0.00 4.30
2378 2665 1.502163 GAGCCGCCATTGATCCGAAG 61.502 60.000 0.00 0.00 0.00 3.79
2379 2666 3.025619 CCGCCATTGATCCGAAGC 58.974 61.111 0.00 0.00 0.00 3.86
2380 2667 1.524621 CCGCCATTGATCCGAAGCT 60.525 57.895 0.00 0.00 0.00 3.74
2381 2668 1.502163 CCGCCATTGATCCGAAGCTC 61.502 60.000 0.00 0.00 0.00 4.09
2382 2669 1.825285 CGCCATTGATCCGAAGCTCG 61.825 60.000 0.00 0.00 40.07 5.03
2383 2670 1.937391 CCATTGATCCGAAGCTCGC 59.063 57.895 0.00 0.00 38.82 5.03
2384 2671 0.531532 CCATTGATCCGAAGCTCGCT 60.532 55.000 0.00 0.00 38.82 4.93
2385 2672 0.857935 CATTGATCCGAAGCTCGCTC 59.142 55.000 0.00 0.00 38.82 5.03
2386 2673 0.596083 ATTGATCCGAAGCTCGCTCG 60.596 55.000 0.00 0.00 38.82 5.03
2387 2674 3.027449 GATCCGAAGCTCGCTCGC 61.027 66.667 0.64 0.00 38.82 5.03
2388 2675 4.577246 ATCCGAAGCTCGCTCGCC 62.577 66.667 0.64 0.00 38.82 5.54
2392 2679 4.577246 GAAGCTCGCTCGCCCGAT 62.577 66.667 0.00 0.00 36.54 4.18
2393 2680 4.880537 AAGCTCGCTCGCCCGATG 62.881 66.667 0.00 0.00 36.54 3.84
2623 2910 4.670896 TCTTCACAGTTCACACTCATCA 57.329 40.909 0.00 0.00 0.00 3.07
2631 2918 5.046807 ACAGTTCACACTCATCAGATCATCA 60.047 40.000 0.00 0.00 0.00 3.07
2640 2927 6.205076 CACTCATCAGATCATCATTTCCTTCC 59.795 42.308 0.00 0.00 0.00 3.46
2641 2928 6.101442 ACTCATCAGATCATCATTTCCTTCCT 59.899 38.462 0.00 0.00 0.00 3.36
2648 2935 7.722728 CAGATCATCATTTCCTTCCTTCCATTA 59.277 37.037 0.00 0.00 0.00 1.90
2664 2951 7.890127 TCCTTCCATTACTTCATTTCTTCATGT 59.110 33.333 0.00 0.00 0.00 3.21
2666 2953 6.855836 TCCATTACTTCATTTCTTCATGTGC 58.144 36.000 0.00 0.00 0.00 4.57
2667 2954 6.038356 CCATTACTTCATTTCTTCATGTGCC 58.962 40.000 0.00 0.00 0.00 5.01
2668 2955 6.350361 CCATTACTTCATTTCTTCATGTGCCA 60.350 38.462 0.00 0.00 0.00 4.92
2669 2956 6.647334 TTACTTCATTTCTTCATGTGCCAA 57.353 33.333 0.00 0.00 0.00 4.52
2670 2957 4.874970 ACTTCATTTCTTCATGTGCCAAC 58.125 39.130 0.00 0.00 0.00 3.77
2689 2976 4.201851 CCAACTACTTGGCTTTGATCATCG 60.202 45.833 0.00 0.00 40.79 3.84
2697 2984 1.064654 GCTTTGATCATCGAACCAGGC 59.935 52.381 0.00 0.00 0.00 4.85
2742 3029 4.479993 GCGCTCATCAGGCTGGGT 62.480 66.667 15.73 0.58 0.00 4.51
2799 3086 1.900498 GTCCAAGGTGCTGCTGCTT 60.900 57.895 17.00 0.00 40.48 3.91
2803 3090 4.711949 AGGTGCTGCTGCTTCGGG 62.712 66.667 17.00 0.00 40.48 5.14
2864 3151 2.416836 CCATCTTCGCCTTCAAGTACGA 60.417 50.000 0.00 0.00 0.00 3.43
2881 3168 1.745489 GACAGCCCGTGGAATCACC 60.745 63.158 0.00 0.00 40.65 4.02
2894 3181 1.795286 GAATCACCATCTCGAATCGCC 59.205 52.381 0.00 0.00 0.00 5.54
3031 3324 4.452733 GCCGCCGGTGAGCTTACT 62.453 66.667 18.79 0.00 0.00 2.24
3032 3325 3.072486 GCCGCCGGTGAGCTTACTA 62.072 63.158 18.79 0.00 0.00 1.82
3033 3326 1.065928 CCGCCGGTGAGCTTACTAG 59.934 63.158 18.79 3.41 0.00 2.57
3066 3359 7.446001 AAAATGACAGAAATTCTCCTCTCAC 57.554 36.000 0.00 0.00 0.00 3.51
3067 3360 6.371595 AATGACAGAAATTCTCCTCTCACT 57.628 37.500 0.00 0.00 0.00 3.41
3068 3361 5.815233 TGACAGAAATTCTCCTCTCACTT 57.185 39.130 0.00 0.00 0.00 3.16
3069 3362 6.179906 TGACAGAAATTCTCCTCTCACTTT 57.820 37.500 0.00 0.00 0.00 2.66
3070 3363 6.226787 TGACAGAAATTCTCCTCTCACTTTC 58.773 40.000 0.00 0.00 0.00 2.62
3071 3364 6.179906 ACAGAAATTCTCCTCTCACTTTCA 57.820 37.500 0.00 0.00 0.00 2.69
3072 3365 5.994668 ACAGAAATTCTCCTCTCACTTTCAC 59.005 40.000 0.00 0.00 0.00 3.18
3073 3366 5.411053 CAGAAATTCTCCTCTCACTTTCACC 59.589 44.000 0.00 0.00 0.00 4.02
3074 3367 4.982241 AATTCTCCTCTCACTTTCACCA 57.018 40.909 0.00 0.00 0.00 4.17
3080 3373 1.694150 CTCTCACTTTCACCAGTCCCA 59.306 52.381 0.00 0.00 0.00 4.37
3120 3413 6.149633 GTCTGAATTTTGAACCGTAATGCTT 58.850 36.000 0.00 0.00 0.00 3.91
3134 3427 4.745125 CGTAATGCTTGTACCGAATCTGAT 59.255 41.667 0.00 0.00 0.00 2.90
3138 3431 5.188327 TGCTTGTACCGAATCTGATCTAG 57.812 43.478 0.00 0.00 0.00 2.43
3284 3581 1.419107 GAAATCGACCCGGACTTCGC 61.419 60.000 0.73 0.00 37.59 4.70
3300 3597 2.279784 GCGCTCCGGGAAGATGAG 60.280 66.667 0.00 0.00 0.00 2.90
3348 3645 0.584876 AAGAAACCGGCGAAAACTCG 59.415 50.000 9.30 0.00 0.00 4.18
3390 3687 0.529992 GGAGATACAACCTTCGGGCG 60.530 60.000 0.00 0.00 39.10 6.13
3440 3737 8.640091 CGCAAGTAGAACATATATATGCAGAT 57.360 34.615 20.46 0.00 37.19 2.90
3441 3738 8.538039 CGCAAGTAGAACATATATATGCAGATG 58.462 37.037 20.46 12.18 37.19 2.90
3465 3762 6.544197 TGTATTGCCAGAAGTTGAAACTGTTA 59.456 34.615 0.00 0.00 39.66 2.41
3559 3860 6.545504 TTGTCTGAATCTACAACTTGAAGC 57.454 37.500 0.00 0.00 30.88 3.86
3586 3887 3.081804 AGGGAAAACATAAAGCTGGACG 58.918 45.455 0.00 0.00 0.00 4.79
3600 3902 3.438087 AGCTGGACGAAACATCAGATTTG 59.562 43.478 0.00 0.00 0.00 2.32
3608 3910 7.905493 GGACGAAACATCAGATTTGAGAAATAC 59.095 37.037 0.00 0.00 36.61 1.89
3872 4250 6.665992 ATGGAATGAATTCATGGATCTTGG 57.334 37.500 21.39 0.00 38.53 3.61
3892 4270 3.005684 TGGAAAAATTCATCGCTGCTTGT 59.994 39.130 0.00 0.00 0.00 3.16
3930 4308 0.253347 TCTCCCCAGCTTCCAGGAAT 60.253 55.000 1.09 0.00 0.00 3.01
4028 4406 4.320494 GCAGTTGATGGTTGTTTCGAAGAT 60.320 41.667 0.00 0.00 35.04 2.40
4037 4415 3.868757 TGTTTCGAAGATCGTCCAGAT 57.131 42.857 2.90 0.00 41.35 2.90
4100 4478 1.532078 TCCAGACCACGTAGGCACA 60.532 57.895 0.00 0.00 43.14 4.57
4139 4517 5.126707 AGGAAATACGGTACTGAACGAAGAT 59.873 40.000 9.17 0.00 0.00 2.40
4310 4689 3.678056 TGAGTCCAGATTAGCGTTTGT 57.322 42.857 0.00 0.00 0.00 2.83
4317 4696 3.435327 CCAGATTAGCGTTTGTAACAGCA 59.565 43.478 0.00 0.00 34.79 4.41
4322 4701 1.597663 AGCGTTTGTAACAGCAGACAC 59.402 47.619 0.00 0.00 34.79 3.67
4358 4747 1.203050 AGGCCCATGCAACTGTAACTT 60.203 47.619 0.00 0.00 40.13 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.801631 GCCCGGAGATGAGAGTGGG 61.802 68.421 0.73 0.00 39.72 4.61
42 43 3.532155 GCGAGTCTGCCCGGAGAT 61.532 66.667 0.73 0.00 0.00 2.75
103 104 0.666577 GTAGGCACGAACGAACTGCT 60.667 55.000 0.14 0.00 0.00 4.24
158 159 6.634805 ACAGAGCAGTAACGTAGTAGTAGTA 58.365 40.000 0.00 0.00 45.00 1.82
159 160 5.486526 ACAGAGCAGTAACGTAGTAGTAGT 58.513 41.667 0.00 0.00 45.00 2.73
160 161 6.419980 AACAGAGCAGTAACGTAGTAGTAG 57.580 41.667 0.00 0.00 45.00 2.57
161 162 6.652481 AGAAACAGAGCAGTAACGTAGTAGTA 59.348 38.462 0.00 0.00 45.00 1.82
162 163 5.472820 AGAAACAGAGCAGTAACGTAGTAGT 59.527 40.000 0.00 0.00 45.00 2.73
163 164 5.940595 AGAAACAGAGCAGTAACGTAGTAG 58.059 41.667 0.00 0.00 45.00 2.57
188 189 3.333029 TCACGATCATTCAAGGAAGCA 57.667 42.857 0.00 0.00 0.00 3.91
198 199 2.224233 CCTCCTCTGCATCACGATCATT 60.224 50.000 0.00 0.00 0.00 2.57
408 440 5.040715 TCGTTTTGATCGATTGCAAATCA 57.959 34.783 1.71 5.64 34.36 2.57
421 454 2.556622 AGCGGTGGAATTTCGTTTTGAT 59.443 40.909 0.00 0.00 0.00 2.57
476 516 0.111253 AGCAAACCCTGAACCCAGAG 59.889 55.000 0.00 0.00 43.02 3.35
482 522 2.351418 GCAAACAAAGCAAACCCTGAAC 59.649 45.455 0.00 0.00 0.00 3.18
495 548 7.106439 TGTAAATCTTCCTTGAGCAAACAAA 57.894 32.000 0.00 0.00 0.00 2.83
496 549 6.707440 TGTAAATCTTCCTTGAGCAAACAA 57.293 33.333 0.00 0.00 0.00 2.83
497 550 6.716628 AGATGTAAATCTTCCTTGAGCAAACA 59.283 34.615 0.00 0.00 0.00 2.83
498 551 7.150783 AGATGTAAATCTTCCTTGAGCAAAC 57.849 36.000 0.00 0.00 0.00 2.93
557 611 0.025898 CGTCGCATGCATTCACAGAG 59.974 55.000 19.57 0.00 0.00 3.35
559 613 1.061411 CCGTCGCATGCATTCACAG 59.939 57.895 19.57 0.00 0.00 3.66
563 617 1.815421 ACCTCCGTCGCATGCATTC 60.815 57.895 19.57 6.11 0.00 2.67
580 646 3.056035 AGGAACGGAGGAAGTATGTTCAC 60.056 47.826 5.85 0.00 40.42 3.18
588 654 5.247792 ACAAGTATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
589 655 5.731591 ACAAGTATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
590 656 5.482878 AGACAAGTATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
591 657 5.021458 AGACAAGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
592 658 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
594 660 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
595 661 8.033626 ACTAGAAAGACAAGTATTTAGGAACGG 58.966 37.037 0.00 0.00 0.00 4.44
596 662 8.983307 ACTAGAAAGACAAGTATTTAGGAACG 57.017 34.615 0.00 0.00 0.00 3.95
597 663 9.924650 TGACTAGAAAGACAAGTATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
605 671 9.778741 TGTTGAAATGACTAGAAAGACAAGTAT 57.221 29.630 0.00 0.00 31.23 2.12
606 672 9.607988 TTGTTGAAATGACTAGAAAGACAAGTA 57.392 29.630 0.00 0.00 31.23 2.24
607 673 8.506168 TTGTTGAAATGACTAGAAAGACAAGT 57.494 30.769 0.00 0.00 31.23 3.16
608 674 8.616076 ACTTGTTGAAATGACTAGAAAGACAAG 58.384 33.333 0.00 0.00 43.36 3.16
609 675 8.397906 CACTTGTTGAAATGACTAGAAAGACAA 58.602 33.333 0.00 0.00 31.23 3.18
610 676 7.768582 TCACTTGTTGAAATGACTAGAAAGACA 59.231 33.333 0.00 0.00 0.00 3.41
611 677 8.064814 GTCACTTGTTGAAATGACTAGAAAGAC 58.935 37.037 0.00 0.00 38.72 3.01
612 678 8.142994 GTCACTTGTTGAAATGACTAGAAAGA 57.857 34.615 0.00 0.00 38.72 2.52
620 686 7.115805 TCGTATGTAGTCACTTGTTGAAATGAC 59.884 37.037 0.00 0.00 41.47 3.06
621 687 7.149307 TCGTATGTAGTCACTTGTTGAAATGA 58.851 34.615 0.00 0.00 35.39 2.57
622 688 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
623 689 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
624 690 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
625 691 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
626 692 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
627 693 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
628 694 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
629 695 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
630 696 5.405571 ACTTTGCTTCGTATGTAGTCACTTG 59.594 40.000 0.00 0.00 0.00 3.16
631 697 5.405571 CACTTTGCTTCGTATGTAGTCACTT 59.594 40.000 0.00 0.00 0.00 3.16
632 698 4.923871 CACTTTGCTTCGTATGTAGTCACT 59.076 41.667 0.00 0.00 0.00 3.41
633 699 4.921515 TCACTTTGCTTCGTATGTAGTCAC 59.078 41.667 0.00 0.00 0.00 3.67
634 700 5.128992 TCACTTTGCTTCGTATGTAGTCA 57.871 39.130 0.00 0.00 0.00 3.41
635 701 5.061064 CACTCACTTTGCTTCGTATGTAGTC 59.939 44.000 0.00 0.00 0.00 2.59
636 702 4.923871 CACTCACTTTGCTTCGTATGTAGT 59.076 41.667 0.00 0.00 0.00 2.73
637 703 5.161358 TCACTCACTTTGCTTCGTATGTAG 58.839 41.667 0.00 0.00 0.00 2.74
638 704 5.128992 TCACTCACTTTGCTTCGTATGTA 57.871 39.130 0.00 0.00 0.00 2.29
639 705 3.990092 TCACTCACTTTGCTTCGTATGT 58.010 40.909 0.00 0.00 0.00 2.29
640 706 4.990543 TTCACTCACTTTGCTTCGTATG 57.009 40.909 0.00 0.00 0.00 2.39
641 707 5.482908 AGATTCACTCACTTTGCTTCGTAT 58.517 37.500 0.00 0.00 0.00 3.06
642 708 4.883083 AGATTCACTCACTTTGCTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
643 709 3.733337 AGATTCACTCACTTTGCTTCGT 58.267 40.909 0.00 0.00 0.00 3.85
644 710 4.686091 TGTAGATTCACTCACTTTGCTTCG 59.314 41.667 0.00 0.00 0.00 3.79
645 711 6.734104 ATGTAGATTCACTCACTTTGCTTC 57.266 37.500 0.00 0.00 0.00 3.86
646 712 6.150140 GGAATGTAGATTCACTCACTTTGCTT 59.850 38.462 14.01 0.00 39.98 3.91
647 713 5.645497 GGAATGTAGATTCACTCACTTTGCT 59.355 40.000 14.01 0.00 39.98 3.91
648 714 5.412594 TGGAATGTAGATTCACTCACTTTGC 59.587 40.000 14.01 0.00 39.98 3.68
649 715 7.439157 TTGGAATGTAGATTCACTCACTTTG 57.561 36.000 14.01 0.00 39.98 2.77
650 716 8.463930 TTTTGGAATGTAGATTCACTCACTTT 57.536 30.769 14.01 0.00 39.98 2.66
651 717 8.641498 ATTTTGGAATGTAGATTCACTCACTT 57.359 30.769 14.01 0.00 39.98 3.16
652 718 9.911788 ATATTTTGGAATGTAGATTCACTCACT 57.088 29.630 14.01 0.00 39.98 3.41
653 719 9.941664 CATATTTTGGAATGTAGATTCACTCAC 57.058 33.333 14.01 0.00 39.98 3.51
654 720 9.685276 ACATATTTTGGAATGTAGATTCACTCA 57.315 29.630 14.01 1.11 39.98 3.41
656 722 9.911788 AGACATATTTTGGAATGTAGATTCACT 57.088 29.630 14.01 0.00 39.98 3.41
667 733 9.219603 CGGATGTATGTAGACATATTTTGGAAT 57.780 33.333 5.69 0.00 40.18 3.01
668 734 8.208224 ACGGATGTATGTAGACATATTTTGGAA 58.792 33.333 5.69 0.00 40.18 3.53
669 735 7.732025 ACGGATGTATGTAGACATATTTTGGA 58.268 34.615 5.69 0.00 40.18 3.53
670 736 7.962964 ACGGATGTATGTAGACATATTTTGG 57.037 36.000 5.69 0.21 40.18 3.28
685 751 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
686 752 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
688 754 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
689 755 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
690 756 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
691 757 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
717 783 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
718 784 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
719 785 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
720 786 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
721 787 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
722 788 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
723 789 6.156429 ACTCCTCCGTTCCTAAATATTTGTCT 59.844 38.462 11.05 0.00 0.00 3.41
724 790 6.346896 ACTCCTCCGTTCCTAAATATTTGTC 58.653 40.000 11.05 0.00 0.00 3.18
725 791 6.309389 ACTCCTCCGTTCCTAAATATTTGT 57.691 37.500 11.05 0.00 0.00 2.83
726 792 7.270047 TGTACTCCTCCGTTCCTAAATATTTG 58.730 38.462 11.05 1.40 0.00 2.32
727 793 7.427989 TGTACTCCTCCGTTCCTAAATATTT 57.572 36.000 5.89 5.89 0.00 1.40
728 794 7.289317 TGATGTACTCCTCCGTTCCTAAATATT 59.711 37.037 0.00 0.00 0.00 1.28
729 795 6.781014 TGATGTACTCCTCCGTTCCTAAATAT 59.219 38.462 0.00 0.00 0.00 1.28
730 796 6.040166 GTGATGTACTCCTCCGTTCCTAAATA 59.960 42.308 0.00 0.00 0.00 1.40
731 797 4.960469 TGATGTACTCCTCCGTTCCTAAAT 59.040 41.667 0.00 0.00 0.00 1.40
732 798 4.159135 GTGATGTACTCCTCCGTTCCTAAA 59.841 45.833 0.00 0.00 0.00 1.85
733 799 3.698040 GTGATGTACTCCTCCGTTCCTAA 59.302 47.826 0.00 0.00 0.00 2.69
734 800 3.285484 GTGATGTACTCCTCCGTTCCTA 58.715 50.000 0.00 0.00 0.00 2.94
735 801 2.100989 GTGATGTACTCCTCCGTTCCT 58.899 52.381 0.00 0.00 0.00 3.36
736 802 1.822990 TGTGATGTACTCCTCCGTTCC 59.177 52.381 0.00 0.00 0.00 3.62
737 803 3.251571 GTTGTGATGTACTCCTCCGTTC 58.748 50.000 0.00 0.00 0.00 3.95
738 804 2.028385 GGTTGTGATGTACTCCTCCGTT 60.028 50.000 0.00 0.00 0.00 4.44
739 805 1.549170 GGTTGTGATGTACTCCTCCGT 59.451 52.381 0.00 0.00 0.00 4.69
740 806 1.548719 TGGTTGTGATGTACTCCTCCG 59.451 52.381 0.00 0.00 0.00 4.63
741 807 3.695830 TTGGTTGTGATGTACTCCTCC 57.304 47.619 0.00 0.00 0.00 4.30
742 808 6.879458 AGTAAATTGGTTGTGATGTACTCCTC 59.121 38.462 0.00 0.00 0.00 3.71
743 809 6.655003 CAGTAAATTGGTTGTGATGTACTCCT 59.345 38.462 0.00 0.00 26.47 3.69
744 810 6.622896 GCAGTAAATTGGTTGTGATGTACTCC 60.623 42.308 0.00 0.00 26.47 3.85
745 811 6.149474 AGCAGTAAATTGGTTGTGATGTACTC 59.851 38.462 0.00 0.00 26.47 2.59
746 812 6.003950 AGCAGTAAATTGGTTGTGATGTACT 58.996 36.000 0.00 0.00 28.55 2.73
747 813 6.254281 AGCAGTAAATTGGTTGTGATGTAC 57.746 37.500 0.00 0.00 0.00 2.90
748 814 6.892658 AAGCAGTAAATTGGTTGTGATGTA 57.107 33.333 0.00 0.00 37.39 2.29
749 815 5.789643 AAGCAGTAAATTGGTTGTGATGT 57.210 34.783 0.00 0.00 37.39 3.06
750 816 9.289303 GTAATAAGCAGTAAATTGGTTGTGATG 57.711 33.333 0.78 0.00 39.01 3.07
751 817 9.243105 AGTAATAAGCAGTAAATTGGTTGTGAT 57.757 29.630 0.78 0.00 39.01 3.06
752 818 8.511321 CAGTAATAAGCAGTAAATTGGTTGTGA 58.489 33.333 0.78 0.00 39.01 3.58
753 819 7.273381 GCAGTAATAAGCAGTAAATTGGTTGTG 59.727 37.037 0.78 0.00 39.01 3.33
754 820 7.176690 AGCAGTAATAAGCAGTAAATTGGTTGT 59.823 33.333 0.78 0.00 39.01 3.32
755 821 7.485913 CAGCAGTAATAAGCAGTAAATTGGTTG 59.514 37.037 0.78 0.00 39.01 3.77
756 822 7.538575 CAGCAGTAATAAGCAGTAAATTGGTT 58.461 34.615 0.00 0.00 41.29 3.67
757 823 6.404734 GCAGCAGTAATAAGCAGTAAATTGGT 60.405 38.462 0.00 0.00 0.00 3.67
758 824 5.973565 GCAGCAGTAATAAGCAGTAAATTGG 59.026 40.000 0.00 0.00 0.00 3.16
759 825 6.789262 AGCAGCAGTAATAAGCAGTAAATTG 58.211 36.000 0.00 0.00 0.00 2.32
760 826 7.770897 ACTAGCAGCAGTAATAAGCAGTAAATT 59.229 33.333 0.00 0.00 0.00 1.82
761 827 7.225538 CACTAGCAGCAGTAATAAGCAGTAAAT 59.774 37.037 0.00 0.00 0.00 1.40
762 828 6.535150 CACTAGCAGCAGTAATAAGCAGTAAA 59.465 38.462 0.00 0.00 0.00 2.01
791 857 0.673437 TCAGTGACACAGACGCATGA 59.327 50.000 8.59 0.00 0.00 3.07
847 958 2.877097 TTGCATAGACCAAAGCAGGA 57.123 45.000 0.00 0.00 38.35 3.86
975 1129 1.899814 AGATTGCGTTACCCAGTCTGA 59.100 47.619 0.00 0.00 29.53 3.27
994 1148 1.941294 GCATGTGCCTCTCATCTTGAG 59.059 52.381 0.00 0.00 39.39 3.02
1158 1333 1.212229 GAAGTCGACCACCGTCCTC 59.788 63.158 13.01 0.00 39.75 3.71
1511 1688 0.175760 ACGAAGACGATCATGGTGGG 59.824 55.000 0.00 0.00 42.66 4.61
1566 1753 2.296190 ACACACAACTCGCAGTCAGATA 59.704 45.455 0.00 0.00 0.00 1.98
1567 1754 1.069204 ACACACAACTCGCAGTCAGAT 59.931 47.619 0.00 0.00 0.00 2.90
1569 1756 0.855349 GACACACAACTCGCAGTCAG 59.145 55.000 0.00 0.00 0.00 3.51
1572 1759 1.591594 CGGACACACAACTCGCAGT 60.592 57.895 0.00 0.00 0.00 4.40
1573 1760 0.318360 TACGGACACACAACTCGCAG 60.318 55.000 0.00 0.00 0.00 5.18
1574 1761 0.315886 ATACGGACACACAACTCGCA 59.684 50.000 0.00 0.00 0.00 5.10
1575 1762 0.989890 GATACGGACACACAACTCGC 59.010 55.000 0.00 0.00 0.00 5.03
1576 1763 2.251040 CAGATACGGACACACAACTCG 58.749 52.381 0.00 0.00 0.00 4.18
1873 2063 2.285668 TCCTGCCCTTCCCTGAGG 60.286 66.667 0.00 0.00 36.52 3.86
1876 2066 2.285668 TCCTCCTGCCCTTCCCTG 60.286 66.667 0.00 0.00 0.00 4.45
1951 2141 2.415010 CTCACCATCTCCTCGCCG 59.585 66.667 0.00 0.00 0.00 6.46
2266 2456 2.607750 ATGAGGTGGTCGTGGGCT 60.608 61.111 0.00 0.00 0.00 5.19
2314 2601 1.383386 GAGGGGGAAGAGGAGGACC 60.383 68.421 0.00 0.00 0.00 4.46
2315 2602 1.383386 GGAGGGGGAAGAGGAGGAC 60.383 68.421 0.00 0.00 0.00 3.85
2316 2603 1.550374 AGGAGGGGGAAGAGGAGGA 60.550 63.158 0.00 0.00 0.00 3.71
2317 2604 1.074850 GAGGAGGGGGAAGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
2318 2605 0.398381 CAGAGGAGGGGGAAGAGGAG 60.398 65.000 0.00 0.00 0.00 3.69
2319 2606 1.706575 CAGAGGAGGGGGAAGAGGA 59.293 63.158 0.00 0.00 0.00 3.71
2320 2607 2.069430 GCAGAGGAGGGGGAAGAGG 61.069 68.421 0.00 0.00 0.00 3.69
2321 2608 1.002792 AGCAGAGGAGGGGGAAGAG 59.997 63.158 0.00 0.00 0.00 2.85
2322 2609 1.002274 GAGCAGAGGAGGGGGAAGA 59.998 63.158 0.00 0.00 0.00 2.87
2323 2610 1.002792 AGAGCAGAGGAGGGGGAAG 59.997 63.158 0.00 0.00 0.00 3.46
2324 2611 1.306482 CAGAGCAGAGGAGGGGGAA 60.306 63.158 0.00 0.00 0.00 3.97
2325 2612 2.366167 CAGAGCAGAGGAGGGGGA 59.634 66.667 0.00 0.00 0.00 4.81
2326 2613 2.767496 CCAGAGCAGAGGAGGGGG 60.767 72.222 0.00 0.00 0.00 5.40
2327 2614 1.204113 AAACCAGAGCAGAGGAGGGG 61.204 60.000 0.00 0.00 0.00 4.79
2328 2615 0.251634 GAAACCAGAGCAGAGGAGGG 59.748 60.000 0.00 0.00 0.00 4.30
2329 2616 0.251634 GGAAACCAGAGCAGAGGAGG 59.748 60.000 0.00 0.00 0.00 4.30
2330 2617 0.108424 CGGAAACCAGAGCAGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
2331 2618 0.541998 TCGGAAACCAGAGCAGAGGA 60.542 55.000 0.00 0.00 0.00 3.71
2332 2619 0.108424 CTCGGAAACCAGAGCAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
2333 2620 0.891373 TCTCGGAAACCAGAGCAGAG 59.109 55.000 0.00 0.00 34.66 3.35
2334 2621 0.603569 GTCTCGGAAACCAGAGCAGA 59.396 55.000 0.00 0.00 34.66 4.26
2335 2622 0.734253 CGTCTCGGAAACCAGAGCAG 60.734 60.000 0.00 0.00 34.66 4.24
2336 2623 1.289066 CGTCTCGGAAACCAGAGCA 59.711 57.895 0.00 0.00 34.66 4.26
2337 2624 1.009389 CACGTCTCGGAAACCAGAGC 61.009 60.000 0.00 0.00 34.66 4.09
2338 2625 1.009389 GCACGTCTCGGAAACCAGAG 61.009 60.000 0.00 0.00 35.91 3.35
2339 2626 1.006571 GCACGTCTCGGAAACCAGA 60.007 57.895 0.00 0.00 0.00 3.86
2340 2627 1.006102 AGCACGTCTCGGAAACCAG 60.006 57.895 0.00 0.00 0.00 4.00
2341 2628 1.300620 CAGCACGTCTCGGAAACCA 60.301 57.895 0.00 0.00 0.00 3.67
2342 2629 1.006571 TCAGCACGTCTCGGAAACC 60.007 57.895 0.00 0.00 0.00 3.27
2343 2630 1.618640 GCTCAGCACGTCTCGGAAAC 61.619 60.000 0.00 0.00 0.00 2.78
2344 2631 1.372997 GCTCAGCACGTCTCGGAAA 60.373 57.895 0.00 0.00 0.00 3.13
2345 2632 2.258591 GCTCAGCACGTCTCGGAA 59.741 61.111 0.00 0.00 0.00 4.30
2346 2633 3.749064 GGCTCAGCACGTCTCGGA 61.749 66.667 0.00 0.00 0.00 4.55
2352 2639 4.704833 AATGGCGGCTCAGCACGT 62.705 61.111 11.43 0.00 39.27 4.49
2353 2640 4.170062 CAATGGCGGCTCAGCACG 62.170 66.667 11.43 0.27 39.27 5.34
2354 2641 2.056481 GATCAATGGCGGCTCAGCAC 62.056 60.000 11.43 0.00 39.27 4.40
2355 2642 1.820906 GATCAATGGCGGCTCAGCA 60.821 57.895 11.43 0.00 39.27 4.41
2356 2643 2.550101 GGATCAATGGCGGCTCAGC 61.550 63.158 11.43 0.00 0.00 4.26
2357 2644 2.249535 CGGATCAATGGCGGCTCAG 61.250 63.158 11.43 0.00 0.00 3.35
2358 2645 2.203056 CGGATCAATGGCGGCTCA 60.203 61.111 11.43 0.00 0.00 4.26
2359 2646 1.502163 CTTCGGATCAATGGCGGCTC 61.502 60.000 11.43 0.00 0.00 4.70
2360 2647 1.524621 CTTCGGATCAATGGCGGCT 60.525 57.895 11.43 0.00 0.00 5.52
2361 2648 3.025619 CTTCGGATCAATGGCGGC 58.974 61.111 0.00 0.00 0.00 6.53
2362 2649 1.502163 GAGCTTCGGATCAATGGCGG 61.502 60.000 0.00 0.00 0.00 6.13
2363 2650 1.825285 CGAGCTTCGGATCAATGGCG 61.825 60.000 0.00 0.00 36.00 5.69
2364 2651 1.937391 CGAGCTTCGGATCAATGGC 59.063 57.895 0.00 0.00 36.00 4.40
2365 2652 0.531532 AGCGAGCTTCGGATCAATGG 60.532 55.000 7.50 0.00 40.84 3.16
2366 2653 0.857935 GAGCGAGCTTCGGATCAATG 59.142 55.000 0.00 0.00 40.84 2.82
2367 2654 0.596083 CGAGCGAGCTTCGGATCAAT 60.596 55.000 0.00 0.00 40.84 2.57
2368 2655 1.226688 CGAGCGAGCTTCGGATCAA 60.227 57.895 0.00 0.00 40.84 2.57
2369 2656 2.409243 CGAGCGAGCTTCGGATCA 59.591 61.111 0.00 0.00 40.84 2.92
2370 2657 3.027449 GCGAGCGAGCTTCGGATC 61.027 66.667 8.28 0.00 40.84 3.36
2371 2658 4.577246 GGCGAGCGAGCTTCGGAT 62.577 66.667 8.28 0.00 40.84 4.18
2375 2662 4.577246 ATCGGGCGAGCGAGCTTC 62.577 66.667 0.00 0.00 37.29 3.86
2376 2663 4.880537 CATCGGGCGAGCGAGCTT 62.881 66.667 0.00 0.00 37.29 3.74
2396 2683 1.022735 GAACTCCTCCTGCATGCATG 58.977 55.000 22.97 22.70 0.00 4.06
2397 2684 0.622136 TGAACTCCTCCTGCATGCAT 59.378 50.000 22.97 2.77 0.00 3.96
2398 2685 0.035725 CTGAACTCCTCCTGCATGCA 60.036 55.000 21.29 21.29 0.00 3.96
2399 2686 1.375098 GCTGAACTCCTCCTGCATGC 61.375 60.000 11.82 11.82 0.00 4.06
2400 2687 1.088340 CGCTGAACTCCTCCTGCATG 61.088 60.000 0.00 0.00 0.00 4.06
2401 2688 1.220206 CGCTGAACTCCTCCTGCAT 59.780 57.895 0.00 0.00 0.00 3.96
2402 2689 2.659016 CGCTGAACTCCTCCTGCA 59.341 61.111 0.00 0.00 0.00 4.41
2403 2690 2.817396 GCGCTGAACTCCTCCTGC 60.817 66.667 0.00 0.00 0.00 4.85
2404 2691 2.492449 TTCGCGCTGAACTCCTCCTG 62.492 60.000 5.56 0.00 0.00 3.86
2405 2692 2.219325 CTTCGCGCTGAACTCCTCCT 62.219 60.000 5.56 0.00 31.87 3.69
2606 2893 4.563061 TGATCTGATGAGTGTGAACTGTG 58.437 43.478 0.00 0.00 0.00 3.66
2607 2894 4.879197 TGATCTGATGAGTGTGAACTGT 57.121 40.909 0.00 0.00 0.00 3.55
2609 2896 5.672421 TGATGATCTGATGAGTGTGAACT 57.328 39.130 0.00 0.00 0.00 3.01
2611 2898 6.541278 GGAAATGATGATCTGATGAGTGTGAA 59.459 38.462 0.00 0.00 0.00 3.18
2612 2899 6.053650 GGAAATGATGATCTGATGAGTGTGA 58.946 40.000 0.00 0.00 0.00 3.58
2623 2910 5.722172 TGGAAGGAAGGAAATGATGATCT 57.278 39.130 0.00 0.00 0.00 2.75
2631 2918 8.670521 AAATGAAGTAATGGAAGGAAGGAAAT 57.329 30.769 0.00 0.00 0.00 2.17
2640 2927 7.487189 GCACATGAAGAAATGAAGTAATGGAAG 59.513 37.037 0.00 0.00 0.00 3.46
2641 2928 7.315142 GCACATGAAGAAATGAAGTAATGGAA 58.685 34.615 0.00 0.00 0.00 3.53
2648 2935 4.586001 AGTTGGCACATGAAGAAATGAAGT 59.414 37.500 0.00 0.00 39.30 3.01
2667 2954 4.631377 TCGATGATCAAAGCCAAGTAGTTG 59.369 41.667 0.00 3.09 0.00 3.16
2668 2955 4.832248 TCGATGATCAAAGCCAAGTAGTT 58.168 39.130 0.00 0.00 0.00 2.24
2669 2956 4.471904 TCGATGATCAAAGCCAAGTAGT 57.528 40.909 0.00 0.00 0.00 2.73
2670 2957 4.034510 GGTTCGATGATCAAAGCCAAGTAG 59.965 45.833 0.00 0.00 0.00 2.57
2689 2976 1.303561 TGATGCACAGGCCTGGTTC 60.304 57.895 35.42 24.06 40.13 3.62
2757 3044 2.743928 CAGAACGGCCTGGTGAGC 60.744 66.667 0.00 0.00 0.00 4.26
2776 3063 1.672356 GCAGCACCTTGGACACGAT 60.672 57.895 0.00 0.00 0.00 3.73
2864 3151 2.351276 GGTGATTCCACGGGCTGT 59.649 61.111 0.00 0.00 44.09 4.40
2881 3168 0.572590 GACGTTGGCGATTCGAGATG 59.427 55.000 10.88 2.68 42.00 2.90
2886 3173 1.282248 ACTGTGACGTTGGCGATTCG 61.282 55.000 0.62 0.62 42.00 3.34
3041 3334 7.723172 AGTGAGAGGAGAATTTCTGTCATTTTT 59.277 33.333 3.03 0.00 36.06 1.94
3042 3335 7.230027 AGTGAGAGGAGAATTTCTGTCATTTT 58.770 34.615 3.03 0.00 36.06 1.82
3043 3336 6.777782 AGTGAGAGGAGAATTTCTGTCATTT 58.222 36.000 3.03 0.00 36.06 2.32
3044 3337 6.371595 AGTGAGAGGAGAATTTCTGTCATT 57.628 37.500 3.03 0.00 36.06 2.57
3045 3338 6.371595 AAGTGAGAGGAGAATTTCTGTCAT 57.628 37.500 3.03 0.00 36.06 3.06
3046 3339 5.815233 AAGTGAGAGGAGAATTTCTGTCA 57.185 39.130 3.03 0.00 32.05 3.58
3047 3340 6.147000 GTGAAAGTGAGAGGAGAATTTCTGTC 59.853 42.308 3.03 0.72 0.00 3.51
3048 3341 5.994668 GTGAAAGTGAGAGGAGAATTTCTGT 59.005 40.000 3.03 0.00 0.00 3.41
3049 3342 5.411053 GGTGAAAGTGAGAGGAGAATTTCTG 59.589 44.000 3.03 0.00 0.00 3.02
3050 3343 5.072329 TGGTGAAAGTGAGAGGAGAATTTCT 59.928 40.000 0.00 0.00 0.00 2.52
3051 3344 5.308825 TGGTGAAAGTGAGAGGAGAATTTC 58.691 41.667 0.00 0.00 0.00 2.17
3052 3345 5.163152 ACTGGTGAAAGTGAGAGGAGAATTT 60.163 40.000 0.00 0.00 0.00 1.82
3053 3346 4.349342 ACTGGTGAAAGTGAGAGGAGAATT 59.651 41.667 0.00 0.00 0.00 2.17
3054 3347 3.906846 ACTGGTGAAAGTGAGAGGAGAAT 59.093 43.478 0.00 0.00 0.00 2.40
3055 3348 3.309296 ACTGGTGAAAGTGAGAGGAGAA 58.691 45.455 0.00 0.00 0.00 2.87
3056 3349 2.894126 GACTGGTGAAAGTGAGAGGAGA 59.106 50.000 0.00 0.00 0.00 3.71
3057 3350 2.028567 GGACTGGTGAAAGTGAGAGGAG 60.029 54.545 0.00 0.00 0.00 3.69
3058 3351 1.971357 GGACTGGTGAAAGTGAGAGGA 59.029 52.381 0.00 0.00 0.00 3.71
3059 3352 1.002544 GGGACTGGTGAAAGTGAGAGG 59.997 57.143 0.00 0.00 0.00 3.69
3060 3353 1.694150 TGGGACTGGTGAAAGTGAGAG 59.306 52.381 0.00 0.00 0.00 3.20
3061 3354 1.801242 TGGGACTGGTGAAAGTGAGA 58.199 50.000 0.00 0.00 0.00 3.27
3062 3355 2.430465 CATGGGACTGGTGAAAGTGAG 58.570 52.381 0.00 0.00 0.00 3.51
3063 3356 1.545428 GCATGGGACTGGTGAAAGTGA 60.545 52.381 0.00 0.00 0.00 3.41
3064 3357 0.883833 GCATGGGACTGGTGAAAGTG 59.116 55.000 0.00 0.00 0.00 3.16
3065 3358 0.251341 GGCATGGGACTGGTGAAAGT 60.251 55.000 0.00 0.00 0.00 2.66
3066 3359 0.967380 GGGCATGGGACTGGTGAAAG 60.967 60.000 0.00 0.00 0.00 2.62
3067 3360 1.076549 GGGCATGGGACTGGTGAAA 59.923 57.895 0.00 0.00 0.00 2.69
3068 3361 2.763215 GGGCATGGGACTGGTGAA 59.237 61.111 0.00 0.00 0.00 3.18
3069 3362 3.716195 CGGGCATGGGACTGGTGA 61.716 66.667 0.00 0.00 0.00 4.02
3073 3366 4.738998 TTGGCGGGCATGGGACTG 62.739 66.667 4.64 0.00 0.00 3.51
3074 3367 4.740822 GTTGGCGGGCATGGGACT 62.741 66.667 4.64 0.00 0.00 3.85
3092 3385 2.293399 ACGGTTCAAAATTCAGACAGCC 59.707 45.455 0.00 0.00 0.00 4.85
3094 3387 5.569059 GCATTACGGTTCAAAATTCAGACAG 59.431 40.000 0.00 0.00 0.00 3.51
3098 3391 5.920273 ACAAGCATTACGGTTCAAAATTCAG 59.080 36.000 0.00 0.00 31.36 3.02
3120 3413 7.733969 AGTACTACTAGATCAGATTCGGTACA 58.266 38.462 0.00 0.00 0.00 2.90
3134 3427 8.598916 CAGAGGAGGATGATAAGTACTACTAGA 58.401 40.741 0.00 0.00 0.00 2.43
3138 3431 6.308566 ACCAGAGGAGGATGATAAGTACTAC 58.691 44.000 0.00 0.00 0.00 2.73
3284 3581 0.038709 GATCTCATCTTCCCGGAGCG 60.039 60.000 0.73 0.00 0.00 5.03
3300 3597 1.452833 GTGGCCCTTCCTGCAGATC 60.453 63.158 17.39 0.00 35.26 2.75
3440 3737 4.887071 ACAGTTTCAACTTCTGGCAATACA 59.113 37.500 0.00 0.00 37.08 2.29
3441 3738 5.438761 ACAGTTTCAACTTCTGGCAATAC 57.561 39.130 0.00 0.00 37.08 1.89
3524 3823 9.685276 TGTAGATTCAGACAATTTGGACATTAT 57.315 29.630 0.78 0.00 0.00 1.28
3559 3860 6.154363 TCCAGCTTTATGTTTTCCCTTTATGG 59.846 38.462 0.00 0.00 0.00 2.74
3872 4250 4.479619 AGACAAGCAGCGATGAATTTTTC 58.520 39.130 4.02 0.00 0.00 2.29
3892 4270 5.477291 GGGAGATCTGATTATACGACCAAGA 59.523 44.000 0.00 0.00 0.00 3.02
3930 4308 2.224549 CGGACAATTTACTCGGCAACAA 59.775 45.455 0.00 0.00 0.00 2.83
4028 4406 2.139917 CGGAAACACAAATCTGGACGA 58.860 47.619 0.00 0.00 0.00 4.20
4037 4415 3.839293 CAACCAGAAACGGAAACACAAA 58.161 40.909 0.00 0.00 0.00 2.83
4100 4478 0.963962 TTCCTTACGACAAGACCGCT 59.036 50.000 0.00 0.00 0.00 5.52
4139 4517 1.856873 ATTTGAGCCCCCAGACCCA 60.857 57.895 0.00 0.00 0.00 4.51
4310 4689 1.227999 GCTTGCCGTGTCTGCTGTTA 61.228 55.000 0.00 0.00 0.00 2.41
4317 4696 1.098712 TTTTTCCGCTTGCCGTGTCT 61.099 50.000 0.00 0.00 34.38 3.41
4342 4721 3.440173 CCCTACAAGTTACAGTTGCATGG 59.560 47.826 0.00 0.00 31.85 3.66
4386 4775 3.120199 CCGAACTTCAAGCAAACATCGAT 60.120 43.478 0.00 0.00 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.