Multiple sequence alignment - TraesCS2B01G138800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G138800 chr2B 100.000 3494 0 0 1 3494 105894427 105897920 0.000000e+00 6453
1 TraesCS2B01G138800 chr2B 97.669 944 22 0 1 944 484922586 484923529 0.000000e+00 1622
2 TraesCS2B01G138800 chr2B 97.458 944 22 1 1 944 40896668 40895727 0.000000e+00 1609
3 TraesCS2B01G138800 chr2B 94.969 318 12 2 3181 3494 793364328 793364011 2.420000e-136 496
4 TraesCS2B01G138800 chr2A 92.591 1849 97 18 958 2805 69313433 69315242 0.000000e+00 2619
5 TraesCS2B01G138800 chr2A 95.584 317 11 1 3179 3492 7741066 7741382 4.020000e-139 505
6 TraesCS2B01G138800 chr2A 84.615 260 27 7 2921 3179 69315358 69315605 2.690000e-61 246
7 TraesCS2B01G138800 chr2D 95.805 1025 43 0 1532 2556 69275266 69276290 0.000000e+00 1655
8 TraesCS2B01G138800 chr2D 96.034 580 20 1 958 1537 69269240 69269816 0.000000e+00 941
9 TraesCS2B01G138800 chr2D 93.386 378 17 4 2564 2941 69277496 69277865 1.420000e-153 553
10 TraesCS2B01G138800 chr2D 95.584 317 11 1 3181 3494 308677942 308678258 4.020000e-139 505
11 TraesCS2B01G138800 chr2D 95.268 317 12 1 3181 3494 308681373 308681689 1.870000e-137 499
12 TraesCS2B01G138800 chr2D 96.748 246 8 0 2937 3182 69277915 69278160 9.030000e-111 411
13 TraesCS2B01G138800 chr5B 97.780 946 20 1 1 946 600473465 600474409 0.000000e+00 1629
14 TraesCS2B01G138800 chr4A 97.778 945 20 1 1 945 709008609 709007666 0.000000e+00 1628
15 TraesCS2B01G138800 chr7B 97.672 945 21 1 1 944 56926406 56925462 0.000000e+00 1622
16 TraesCS2B01G138800 chr7B 94.637 317 14 1 3181 3494 633269308 633268992 4.050000e-134 488
17 TraesCS2B01G138800 chr7B 93.051 331 18 3 3169 3494 64391787 64392117 2.440000e-131 479
18 TraesCS2B01G138800 chr7B 71.841 831 190 37 1656 2467 374529722 374530527 7.650000e-47 198
19 TraesCS2B01G138800 chr6B 97.672 945 20 2 1 945 8924063 8925005 0.000000e+00 1622
20 TraesCS2B01G138800 chr6B 96.809 940 27 2 5 944 643874106 643873170 0.000000e+00 1567
21 TraesCS2B01G138800 chr6B 80.980 510 89 7 1971 2476 280999281 280998776 7.030000e-107 398
22 TraesCS2B01G138800 chr6B 80.332 361 64 6 1610 1968 281005325 281004970 2.070000e-67 267
23 TraesCS2B01G138800 chr4B 97.669 944 22 0 1 944 63817415 63816472 0.000000e+00 1622
24 TraesCS2B01G138800 chr4B 97.354 945 25 0 1 945 188513813 188514757 0.000000e+00 1607
25 TraesCS2B01G138800 chr1D 81.417 1426 240 17 1095 2503 450143754 450142337 0.000000e+00 1142
26 TraesCS2B01G138800 chr1A 81.351 1421 243 15 1095 2500 545418582 545417169 0.000000e+00 1136
27 TraesCS2B01G138800 chr6D 80.259 1388 257 16 1097 2476 157452019 157450641 0.000000e+00 1029
28 TraesCS2B01G138800 chr6D 94.969 318 12 2 3181 3494 338921034 338920717 2.420000e-136 496
29 TraesCS2B01G138800 chr1B 80.084 1436 243 27 1095 2503 616771095 616769676 0.000000e+00 1027
30 TraesCS2B01G138800 chr6A 93.617 329 16 3 3169 3494 38723502 38723176 1.460000e-133 486
31 TraesCS2B01G138800 chr4D 94.620 316 14 1 3182 3494 469444470 469444785 1.460000e-133 486
32 TraesCS2B01G138800 chr7D 71.961 831 189 38 1656 2467 379090949 379091754 1.640000e-48 204
33 TraesCS2B01G138800 chr7A 71.721 831 191 38 1656 2467 427557707 427558512 3.560000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G138800 chr2B 105894427 105897920 3493 False 6453.0 6453 100.000 1 3494 1 chr2B.!!$F1 3493
1 TraesCS2B01G138800 chr2B 484922586 484923529 943 False 1622.0 1622 97.669 1 944 1 chr2B.!!$F2 943
2 TraesCS2B01G138800 chr2B 40895727 40896668 941 True 1609.0 1609 97.458 1 944 1 chr2B.!!$R1 943
3 TraesCS2B01G138800 chr2A 69313433 69315605 2172 False 1432.5 2619 88.603 958 3179 2 chr2A.!!$F2 2221
4 TraesCS2B01G138800 chr2D 69269240 69269816 576 False 941.0 941 96.034 958 1537 1 chr2D.!!$F1 579
5 TraesCS2B01G138800 chr2D 69275266 69278160 2894 False 873.0 1655 95.313 1532 3182 3 chr2D.!!$F2 1650
6 TraesCS2B01G138800 chr2D 308677942 308681689 3747 False 502.0 505 95.426 3181 3494 2 chr2D.!!$F3 313
7 TraesCS2B01G138800 chr5B 600473465 600474409 944 False 1629.0 1629 97.780 1 946 1 chr5B.!!$F1 945
8 TraesCS2B01G138800 chr4A 709007666 709008609 943 True 1628.0 1628 97.778 1 945 1 chr4A.!!$R1 944
9 TraesCS2B01G138800 chr7B 56925462 56926406 944 True 1622.0 1622 97.672 1 944 1 chr7B.!!$R1 943
10 TraesCS2B01G138800 chr6B 8924063 8925005 942 False 1622.0 1622 97.672 1 945 1 chr6B.!!$F1 944
11 TraesCS2B01G138800 chr6B 643873170 643874106 936 True 1567.0 1567 96.809 5 944 1 chr6B.!!$R3 939
12 TraesCS2B01G138800 chr6B 280998776 280999281 505 True 398.0 398 80.980 1971 2476 1 chr6B.!!$R1 505
13 TraesCS2B01G138800 chr4B 63816472 63817415 943 True 1622.0 1622 97.669 1 944 1 chr4B.!!$R1 943
14 TraesCS2B01G138800 chr4B 188513813 188514757 944 False 1607.0 1607 97.354 1 945 1 chr4B.!!$F1 944
15 TraesCS2B01G138800 chr1D 450142337 450143754 1417 True 1142.0 1142 81.417 1095 2503 1 chr1D.!!$R1 1408
16 TraesCS2B01G138800 chr1A 545417169 545418582 1413 True 1136.0 1136 81.351 1095 2500 1 chr1A.!!$R1 1405
17 TraesCS2B01G138800 chr6D 157450641 157452019 1378 True 1029.0 1029 80.259 1097 2476 1 chr6D.!!$R1 1379
18 TraesCS2B01G138800 chr1B 616769676 616771095 1419 True 1027.0 1027 80.084 1095 2503 1 chr1B.!!$R1 1408
19 TraesCS2B01G138800 chr7D 379090949 379091754 805 False 204.0 204 71.961 1656 2467 1 chr7D.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 489 0.753111 CGCCGGGTAGGTAGGTTACT 60.753 60.000 2.18 0.0 43.7 2.24 F
1057 1059 1.261480 GTTCAGCACCCTCTCTCTCA 58.739 55.000 0.00 0.0 0.0 3.27 F
1941 1961 1.486310 GTACTGGAGTGGATCATGGCA 59.514 52.381 0.00 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2180 0.389948 ATCAGAACGTTCACCTCCGC 60.390 55.0 28.78 0.95 0.0 5.54 R
2159 2187 0.456142 CTCCGCGATCAGAACGTTCA 60.456 55.0 28.78 10.90 0.0 3.18 R
2748 4004 1.821216 TCCATTTTCAAGAGACCGGC 58.179 50.0 0.00 0.00 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 7.637511 ACCAATCTTCTATCCAGTCTTTCATT 58.362 34.615 0.00 0.00 0.00 2.57
225 226 1.098050 GCCGTTCAGATCTGCCAAAT 58.902 50.000 18.36 0.00 0.00 2.32
301 302 5.805728 AGCAACACTACAAAACCTAGCTAT 58.194 37.500 0.00 0.00 0.00 2.97
321 322 5.047021 GCTATATCTGTGATTACCTCTGCCA 60.047 44.000 0.00 0.00 0.00 4.92
488 489 0.753111 CGCCGGGTAGGTAGGTTACT 60.753 60.000 2.18 0.00 43.70 2.24
832 834 1.598130 GGCTATACAGGGCTTGGCG 60.598 63.158 0.44 0.00 0.00 5.69
951 953 4.239991 AGCAGGGCTCCTTGAAGA 57.760 55.556 1.90 0.00 30.62 2.87
952 954 1.682257 AGCAGGGCTCCTTGAAGAC 59.318 57.895 1.90 0.00 30.62 3.01
953 955 1.743252 GCAGGGCTCCTTGAAGACG 60.743 63.158 1.90 0.00 0.00 4.18
954 956 1.743252 CAGGGCTCCTTGAAGACGC 60.743 63.158 0.00 0.00 0.00 5.19
955 957 2.436824 GGGCTCCTTGAAGACGCC 60.437 66.667 13.87 13.87 39.98 5.68
956 958 2.347490 GGCTCCTTGAAGACGCCA 59.653 61.111 16.31 0.00 40.41 5.69
977 979 1.770110 AGACCACACCAGAGCCCAA 60.770 57.895 0.00 0.00 0.00 4.12
1011 1013 5.065731 CAGAGCTTCAATAATGGAGTTCACC 59.934 44.000 5.80 0.00 43.06 4.02
1057 1059 1.261480 GTTCAGCACCCTCTCTCTCA 58.739 55.000 0.00 0.00 0.00 3.27
1091 1093 4.371975 CCGTCGAAAAGGCAAGGA 57.628 55.556 0.00 0.00 0.00 3.36
1092 1094 2.162716 CCGTCGAAAAGGCAAGGAG 58.837 57.895 0.00 0.00 0.00 3.69
1093 1095 1.497722 CGTCGAAAAGGCAAGGAGC 59.502 57.895 0.00 0.00 44.65 4.70
1128 1130 4.351054 CCGGCCCTGCTGTTCCTT 62.351 66.667 0.00 0.00 32.22 3.36
1573 1581 4.806247 AGCTTATCGTGTACATGAGCTTTC 59.194 41.667 21.67 10.38 39.52 2.62
1769 1777 2.124736 GCTAATCCACGCCAGGCA 60.125 61.111 13.30 0.00 0.00 4.75
1941 1961 1.486310 GTACTGGAGTGGATCATGGCA 59.514 52.381 0.00 0.00 0.00 4.92
2046 2074 2.860628 GCTGCCGTATCTGAACGCG 61.861 63.158 3.53 3.53 41.51 6.01
2138 2166 2.812499 GGAGATCGGCGGCTACAA 59.188 61.111 7.21 0.00 0.00 2.41
2141 2169 2.280186 GATCGGCGGCTACAAGGG 60.280 66.667 7.21 0.00 0.00 3.95
2161 2189 4.697756 CAAAGGGCGCGGAGGTGA 62.698 66.667 8.83 0.00 0.00 4.02
2162 2190 3.948719 AAAGGGCGCGGAGGTGAA 61.949 61.111 8.83 0.00 0.00 3.18
2163 2191 4.699522 AAGGGCGCGGAGGTGAAC 62.700 66.667 8.83 0.00 0.00 3.18
2167 2195 3.774702 GCGCGGAGGTGAACGTTC 61.775 66.667 21.42 21.42 0.00 3.95
2168 2196 2.049433 CGCGGAGGTGAACGTTCT 60.049 61.111 27.32 9.06 0.00 3.01
2169 2197 2.372690 CGCGGAGGTGAACGTTCTG 61.373 63.158 27.32 9.15 0.00 3.02
2170 2198 1.006571 GCGGAGGTGAACGTTCTGA 60.007 57.895 27.32 7.05 0.00 3.27
2171 2199 0.389948 GCGGAGGTGAACGTTCTGAT 60.390 55.000 27.32 13.66 0.00 2.90
2208 2257 4.736896 GAGACGGTGTGGACGGCC 62.737 72.222 0.00 0.00 41.14 6.13
2582 3835 7.970614 ACGAGCTAGAAATTGGAATTGATTTTC 59.029 33.333 0.00 0.00 0.00 2.29
2638 3891 7.772332 AAGTGTATTGTACTTCCGATGAATC 57.228 36.000 0.00 0.00 33.28 2.52
2639 3892 7.113658 AGTGTATTGTACTTCCGATGAATCT 57.886 36.000 0.00 0.00 0.00 2.40
2684 3937 9.379791 CCTTCTCGTAAAATAAAATGTACTCCT 57.620 33.333 0.00 0.00 0.00 3.69
2687 3940 9.507280 TCTCGTAAAATAAAATGTACTCCTACG 57.493 33.333 0.00 0.00 0.00 3.51
2688 3941 8.118893 TCGTAAAATAAAATGTACTCCTACGC 57.881 34.615 0.00 0.00 0.00 4.42
2689 3942 7.222611 TCGTAAAATAAAATGTACTCCTACGCC 59.777 37.037 0.00 0.00 0.00 5.68
2690 3943 7.223387 CGTAAAATAAAATGTACTCCTACGCCT 59.777 37.037 0.00 0.00 0.00 5.52
2748 4004 1.209019 AGAGCATGTAGGCTGGTTGAG 59.791 52.381 0.00 0.00 45.99 3.02
2758 4014 1.674057 CTGGTTGAGCCGGTCTCTT 59.326 57.895 21.36 0.00 42.38 2.85
2759 4015 0.671781 CTGGTTGAGCCGGTCTCTTG 60.672 60.000 21.36 7.94 42.38 3.02
2776 4032 6.183360 GGTCTCTTGAAAATGGATTCTACGTG 60.183 42.308 0.00 0.00 0.00 4.49
2841 4097 1.198608 GCGATGACTACGTACGCCAC 61.199 60.000 16.72 5.32 42.79 5.01
2887 4143 5.652744 TTTCTTCTTAGAAAGACACGCAC 57.347 39.130 0.00 0.00 43.63 5.34
3053 4364 6.288294 TCTATGAATTTTACGATGGTCCCTG 58.712 40.000 0.00 0.00 0.00 4.45
3107 4418 3.696045 TCCCATGTGAGTGTTTATTGGG 58.304 45.455 0.00 0.00 35.51 4.12
3119 4430 4.706962 GTGTTTATTGGGGCTCTCTCAATT 59.293 41.667 0.00 0.00 33.72 2.32
3182 4493 8.388656 TCCCAATACAACTTCTCCTATAGTTT 57.611 34.615 0.00 0.00 32.50 2.66
3183 4494 8.832735 TCCCAATACAACTTCTCCTATAGTTTT 58.167 33.333 0.00 0.00 32.50 2.43
3184 4495 9.462606 CCCAATACAACTTCTCCTATAGTTTTT 57.537 33.333 0.00 0.00 32.50 1.94
3266 4577 6.352016 TGGTACAATTGCATTATGTGGTTT 57.648 33.333 5.05 0.00 31.92 3.27
3288 4599 4.186926 TCTCGAGCCAATCAGAAATGAAG 58.813 43.478 7.81 0.00 0.00 3.02
3289 4600 4.081476 TCTCGAGCCAATCAGAAATGAAGA 60.081 41.667 7.81 0.00 0.00 2.87
3383 4694 7.769044 AGAAATAGGAAAATCGCAAGCTAAGTA 59.231 33.333 0.00 0.00 37.18 2.24
3395 4706 6.647481 TCGCAAGCTAAGTAAAAACAGTCATA 59.353 34.615 0.00 0.00 37.18 2.15
3449 8194 3.491619 CCTTCGTTCATGGTCTCGATCAT 60.492 47.826 0.00 0.00 30.99 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.187186 GGTAGACATGGAGTTTGGAGAACTA 59.813 44.000 0.00 0.00 0.00 2.24
245 246 3.307108 TGATCACGACGGGTGCCA 61.307 61.111 0.00 2.83 46.56 4.92
282 283 8.198109 CACAGATATAGCTAGGTTTTGTAGTGT 58.802 37.037 0.00 0.00 0.00 3.55
301 302 3.388024 GGTGGCAGAGGTAATCACAGATA 59.612 47.826 0.00 0.00 0.00 1.98
321 322 1.820877 CGGCTAACCTAGGTATCCGGT 60.821 57.143 28.16 12.54 33.76 5.28
488 489 1.457079 GGTTAGCCTAGCGGGGAGA 60.457 63.158 2.20 0.00 35.12 3.71
832 834 2.592308 CAAGCCCTGTCTAGCCCC 59.408 66.667 0.00 0.00 0.00 5.80
946 948 0.531974 GTGGTCTGTTGGCGTCTTCA 60.532 55.000 0.00 0.00 0.00 3.02
947 949 0.531974 TGTGGTCTGTTGGCGTCTTC 60.532 55.000 0.00 0.00 0.00 2.87
948 950 0.814010 GTGTGGTCTGTTGGCGTCTT 60.814 55.000 0.00 0.00 0.00 3.01
949 951 1.227556 GTGTGGTCTGTTGGCGTCT 60.228 57.895 0.00 0.00 0.00 4.18
950 952 2.251642 GGTGTGGTCTGTTGGCGTC 61.252 63.158 0.00 0.00 0.00 5.19
951 953 2.203153 GGTGTGGTCTGTTGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
952 954 2.203139 TGGTGTGGTCTGTTGGCG 60.203 61.111 0.00 0.00 0.00 5.69
953 955 0.886490 CTCTGGTGTGGTCTGTTGGC 60.886 60.000 0.00 0.00 0.00 4.52
954 956 0.886490 GCTCTGGTGTGGTCTGTTGG 60.886 60.000 0.00 0.00 0.00 3.77
955 957 0.886490 GGCTCTGGTGTGGTCTGTTG 60.886 60.000 0.00 0.00 0.00 3.33
956 958 1.451936 GGCTCTGGTGTGGTCTGTT 59.548 57.895 0.00 0.00 0.00 3.16
977 979 4.774660 ATTGAAGCTCTGGATCTGACAT 57.225 40.909 0.00 0.00 0.00 3.06
1011 1013 2.792947 GGATTGCCATGGCCAGCTG 61.793 63.158 33.44 6.78 41.09 4.24
1128 1130 0.884704 GGAGCGCCAAGAACTTGACA 60.885 55.000 14.99 0.00 42.93 3.58
1482 1484 4.500116 GCGACTGCGAGGAGGTCC 62.500 72.222 0.00 0.00 40.82 4.46
1513 1521 1.971167 GCAATGGCCTCACCGTGAA 60.971 57.895 3.32 0.00 43.94 3.18
1600 1608 1.135915 CTGCAGCTCCTGTATCTCGTT 59.864 52.381 0.00 0.00 33.43 3.85
1644 1652 3.051727 AGAGGTAGAAGATGGGGTAGCTT 60.052 47.826 0.00 0.00 37.82 3.74
1769 1777 3.295273 TGTCGTCGTCCTGCAGCT 61.295 61.111 8.66 0.00 0.00 4.24
1884 1904 2.815647 CCGGCGCTCAAGAACTCC 60.816 66.667 7.64 0.00 0.00 3.85
2022 2050 0.395724 TCAGATACGGCAGCTCCTGA 60.396 55.000 0.00 0.00 32.44 3.86
2027 2055 1.519455 GCGTTCAGATACGGCAGCT 60.519 57.895 0.00 0.00 41.65 4.24
2145 2173 3.948719 TTCACCTCCGCGCCCTTT 61.949 61.111 0.00 0.00 0.00 3.11
2151 2179 2.049433 AGAACGTTCACCTCCGCG 60.049 61.111 28.78 0.00 0.00 6.46
2152 2180 0.389948 ATCAGAACGTTCACCTCCGC 60.390 55.000 28.78 0.95 0.00 5.54
2153 2181 1.630148 GATCAGAACGTTCACCTCCG 58.370 55.000 28.78 10.53 0.00 4.63
2154 2182 1.630148 CGATCAGAACGTTCACCTCC 58.370 55.000 28.78 12.97 0.00 4.30
2155 2183 0.992802 GCGATCAGAACGTTCACCTC 59.007 55.000 28.78 19.09 0.00 3.85
2156 2184 0.732880 CGCGATCAGAACGTTCACCT 60.733 55.000 28.78 12.98 0.00 4.00
2157 2185 1.683790 CCGCGATCAGAACGTTCACC 61.684 60.000 28.78 13.61 0.00 4.02
2158 2186 0.731514 TCCGCGATCAGAACGTTCAC 60.732 55.000 28.78 15.63 0.00 3.18
2159 2187 0.456142 CTCCGCGATCAGAACGTTCA 60.456 55.000 28.78 10.90 0.00 3.18
2160 2188 1.140407 CCTCCGCGATCAGAACGTTC 61.140 60.000 20.71 20.71 0.00 3.95
2161 2189 1.153823 CCTCCGCGATCAGAACGTT 60.154 57.895 8.23 0.00 0.00 3.99
2162 2190 2.341101 ACCTCCGCGATCAGAACGT 61.341 57.895 8.23 0.00 0.00 3.99
2163 2191 1.874019 CACCTCCGCGATCAGAACG 60.874 63.158 8.23 0.00 0.00 3.95
2164 2192 1.519455 CCACCTCCGCGATCAGAAC 60.519 63.158 8.23 0.00 0.00 3.01
2165 2193 2.721167 CCCACCTCCGCGATCAGAA 61.721 63.158 8.23 0.00 0.00 3.02
2166 2194 3.147595 CCCACCTCCGCGATCAGA 61.148 66.667 8.23 0.00 0.00 3.27
2167 2195 4.227134 CCCCACCTCCGCGATCAG 62.227 72.222 8.23 0.00 0.00 2.90
2661 3914 9.507280 CGTAGGAGTACATTTTATTTTACGAGA 57.493 33.333 0.00 0.00 33.94 4.04
2662 3915 8.264632 GCGTAGGAGTACATTTTATTTTACGAG 58.735 37.037 0.00 0.00 33.94 4.18
2681 3934 6.265876 TGATTGTACATACATAAGGCGTAGGA 59.734 38.462 0.00 0.00 35.89 2.94
2682 3935 6.452242 TGATTGTACATACATAAGGCGTAGG 58.548 40.000 0.00 0.00 35.89 3.18
2684 3937 5.924254 GCTGATTGTACATACATAAGGCGTA 59.076 40.000 0.00 0.00 35.89 4.42
2685 3938 4.750098 GCTGATTGTACATACATAAGGCGT 59.250 41.667 0.00 0.00 35.89 5.68
2686 3939 4.749598 TGCTGATTGTACATACATAAGGCG 59.250 41.667 0.00 0.00 35.89 5.52
2687 3940 5.760253 ACTGCTGATTGTACATACATAAGGC 59.240 40.000 0.00 1.23 35.89 4.35
2688 3941 7.116948 GCTACTGCTGATTGTACATACATAAGG 59.883 40.741 0.00 0.00 34.49 2.69
2689 3942 8.012151 GCTACTGCTGATTGTACATACATAAG 57.988 38.462 0.00 3.91 34.49 1.73
2690 3943 7.946655 GCTACTGCTGATTGTACATACATAA 57.053 36.000 0.00 0.00 34.49 1.90
2748 4004 1.821216 TCCATTTTCAAGAGACCGGC 58.179 50.000 0.00 0.00 0.00 6.13
2750 4006 5.005779 CGTAGAATCCATTTTCAAGAGACCG 59.994 44.000 0.00 0.00 0.00 4.79
2758 4014 3.124466 CGTGCACGTAGAATCCATTTTCA 59.876 43.478 30.50 0.00 34.11 2.69
2759 4015 3.369756 TCGTGCACGTAGAATCCATTTTC 59.630 43.478 35.74 0.00 40.80 2.29
2776 4032 2.679355 TGTAACAGCAAACATCGTGC 57.321 45.000 0.00 0.00 42.55 5.34
2841 4097 2.816360 CGCGGTCATGCAGATGGTG 61.816 63.158 0.00 0.00 34.15 4.17
2909 4165 9.387123 GTTGTGCTTCTTTTAATTCTACTTCAG 57.613 33.333 0.00 0.00 0.00 3.02
3134 4445 7.275920 GGATCTCTTACCACAACACATCTATT 58.724 38.462 0.00 0.00 0.00 1.73
3236 4547 3.781079 ATGCAATTGTACCAATCCACG 57.219 42.857 7.40 0.00 0.00 4.94
3238 4549 6.406737 CCACATAATGCAATTGTACCAATCCA 60.407 38.462 7.40 0.00 36.99 3.41
3266 4577 3.893326 TCATTTCTGATTGGCTCGAGA 57.107 42.857 18.75 0.00 0.00 4.04
3406 4717 3.069980 GATCGTCGGAGGCAGCAGT 62.070 63.158 0.00 0.00 0.00 4.40
3408 4719 4.193334 CGATCGTCGGAGGCAGCA 62.193 66.667 7.03 0.00 36.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.