Multiple sequence alignment - TraesCS2B01G138700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G138700 chr2B 100.000 4321 0 0 1 4321 105872538 105876858 0.000000e+00 7943.0
1 TraesCS2B01G138700 chr2B 99.638 276 1 0 1 276 105859710 105859985 4.990000e-139 505.0
2 TraesCS2B01G138700 chr2B 78.095 105 19 4 11 114 248454044 248454145 3.610000e-06 63.9
3 TraesCS2B01G138700 chr7B 97.166 3776 96 8 482 4248 66276092 66279865 0.000000e+00 6370.0
4 TraesCS2B01G138700 chr7B 97.912 2538 49 4 484 3019 56932166 56929631 0.000000e+00 4390.0
5 TraesCS2B01G138700 chr7B 98.374 1661 24 3 2589 4248 56929854 56928196 0.000000e+00 2915.0
6 TraesCS2B01G138700 chr7B 94.606 1613 80 4 485 2090 748392044 748393656 0.000000e+00 2490.0
7 TraesCS2B01G138700 chr6B 98.266 2537 42 2 484 3019 8906295 8908830 0.000000e+00 4440.0
8 TraesCS2B01G138700 chr6B 98.977 1661 14 3 2589 4248 8908606 8910264 0.000000e+00 2970.0
9 TraesCS2B01G138700 chr6B 95.551 1461 57 3 2794 4248 116265070 116263612 0.000000e+00 2331.0
10 TraesCS2B01G138700 chr6B 95.017 1465 62 5 2794 4248 78499566 78498103 0.000000e+00 2290.0
11 TraesCS2B01G138700 chr6B 94.290 753 27 8 2082 2831 116265565 116264826 0.000000e+00 1138.0
12 TraesCS2B01G138700 chr4B 97.911 2537 51 2 484 3019 188474448 188476983 0.000000e+00 4390.0
13 TraesCS2B01G138700 chr4B 98.314 1661 25 3 2589 4248 188476759 188478417 0.000000e+00 2909.0
14 TraesCS2B01G138700 chr4B 90.508 748 50 11 2082 2826 553302031 553302760 0.000000e+00 968.0
15 TraesCS2B01G138700 chr4B 100.000 63 0 0 4259 4321 188478955 188479017 2.730000e-22 117.0
16 TraesCS2B01G138700 chr4B 100.000 63 0 0 4259 4321 188482876 188482938 2.730000e-22 117.0
17 TraesCS2B01G138700 chr4B 100.000 63 0 0 4259 4321 188483680 188483742 2.730000e-22 117.0
18 TraesCS2B01G138700 chr4B 100.000 63 0 0 4259 4321 188484569 188484631 2.730000e-22 117.0
19 TraesCS2B01G138700 chr4B 100.000 63 0 0 4259 4321 188486366 188486428 2.730000e-22 117.0
20 TraesCS2B01G138700 chr4A 97.795 2540 51 5 484 3019 709026360 709023822 0.000000e+00 4375.0
21 TraesCS2B01G138700 chr4A 98.315 1662 24 3 2589 4248 709024046 709022387 0.000000e+00 2911.0
22 TraesCS2B01G138700 chr4A 95.161 1612 72 3 485 2090 662045254 662043643 0.000000e+00 2540.0
23 TraesCS2B01G138700 chr4A 97.057 1461 35 4 2794 4248 662042987 662041529 0.000000e+00 2453.0
24 TraesCS2B01G138700 chr3B 95.851 1615 64 3 478 2090 719995025 719993412 0.000000e+00 2608.0
25 TraesCS2B01G138700 chr3B 95.666 1615 66 4 478 2090 720012128 720010516 0.000000e+00 2591.0
26 TraesCS2B01G138700 chr3B 96.776 1458 38 4 2797 4248 719992754 719991300 0.000000e+00 2423.0
27 TraesCS2B01G138700 chr3B 94.290 753 27 8 2082 2831 799737874 799737135 0.000000e+00 1138.0
28 TraesCS2B01G138700 chr3B 93.717 748 31 8 2087 2831 719993247 719992513 0.000000e+00 1107.0
29 TraesCS2B01G138700 chr3B 92.175 754 38 10 2082 2831 64690736 64690000 0.000000e+00 1046.0
30 TraesCS2B01G138700 chr1B 94.821 753 23 8 2082 2831 669868968 669868229 0.000000e+00 1160.0
31 TraesCS2B01G138700 chr1B 91.589 749 44 12 2082 2826 587058693 587059426 0.000000e+00 1016.0
32 TraesCS2B01G138700 chr1B 91.589 749 44 12 2082 2826 587081077 587081810 0.000000e+00 1016.0
33 TraesCS2B01G138700 chrUn 100.000 63 0 0 4259 4321 57000811 57000749 2.730000e-22 117.0
34 TraesCS2B01G138700 chrUn 100.000 63 0 0 4259 4321 57007804 57007742 2.730000e-22 117.0
35 TraesCS2B01G138700 chrUn 100.000 63 0 0 4259 4321 57009064 57009002 2.730000e-22 117.0
36 TraesCS2B01G138700 chrUn 100.000 63 0 0 4259 4321 57009745 57009683 2.730000e-22 117.0
37 TraesCS2B01G138700 chrUn 100.000 63 0 0 4259 4321 57010723 57010661 2.730000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G138700 chr2B 105872538 105876858 4320 False 7943.000000 7943 100.000000 1 4321 1 chr2B.!!$F2 4320
1 TraesCS2B01G138700 chr7B 66276092 66279865 3773 False 6370.000000 6370 97.166000 482 4248 1 chr7B.!!$F1 3766
2 TraesCS2B01G138700 chr7B 56928196 56932166 3970 True 3652.500000 4390 98.143000 484 4248 2 chr7B.!!$R1 3764
3 TraesCS2B01G138700 chr7B 748392044 748393656 1612 False 2490.000000 2490 94.606000 485 2090 1 chr7B.!!$F2 1605
4 TraesCS2B01G138700 chr6B 8906295 8910264 3969 False 3705.000000 4440 98.621500 484 4248 2 chr6B.!!$F1 3764
5 TraesCS2B01G138700 chr6B 78498103 78499566 1463 True 2290.000000 2290 95.017000 2794 4248 1 chr6B.!!$R1 1454
6 TraesCS2B01G138700 chr6B 116263612 116265565 1953 True 1734.500000 2331 94.920500 2082 4248 2 chr6B.!!$R2 2166
7 TraesCS2B01G138700 chr4B 188474448 188486428 11980 False 1126.285714 4390 99.460714 484 4321 7 chr4B.!!$F2 3837
8 TraesCS2B01G138700 chr4B 553302031 553302760 729 False 968.000000 968 90.508000 2082 2826 1 chr4B.!!$F1 744
9 TraesCS2B01G138700 chr4A 709022387 709026360 3973 True 3643.000000 4375 98.055000 484 4248 2 chr4A.!!$R2 3764
10 TraesCS2B01G138700 chr4A 662041529 662045254 3725 True 2496.500000 2540 96.109000 485 4248 2 chr4A.!!$R1 3763
11 TraesCS2B01G138700 chr3B 720010516 720012128 1612 True 2591.000000 2591 95.666000 478 2090 1 chr3B.!!$R2 1612
12 TraesCS2B01G138700 chr3B 719991300 719995025 3725 True 2046.000000 2608 95.448000 478 4248 3 chr3B.!!$R4 3770
13 TraesCS2B01G138700 chr3B 799737135 799737874 739 True 1138.000000 1138 94.290000 2082 2831 1 chr3B.!!$R3 749
14 TraesCS2B01G138700 chr3B 64690000 64690736 736 True 1046.000000 1046 92.175000 2082 2831 1 chr3B.!!$R1 749
15 TraesCS2B01G138700 chr1B 669868229 669868968 739 True 1160.000000 1160 94.821000 2082 2831 1 chr1B.!!$R1 749
16 TraesCS2B01G138700 chr1B 587058693 587059426 733 False 1016.000000 1016 91.589000 2082 2826 1 chr1B.!!$F1 744
17 TraesCS2B01G138700 chr1B 587081077 587081810 733 False 1016.000000 1016 91.589000 2082 2826 1 chr1B.!!$F2 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.036010 CGTGGAGGCTTGGATTGACT 60.036 55.0 0.00 0.0 0.00 3.41 F
329 330 0.104855 GATGTGATCCGGTGCTGCTA 59.895 55.0 0.00 0.0 0.00 3.49 F
332 333 0.104855 GTGATCCGGTGCTGCTATGA 59.895 55.0 0.00 0.0 0.00 2.15 F
413 414 0.112995 TGGGGATAGCATTGGATGGC 59.887 55.0 0.00 0.0 0.00 4.40 F
415 416 0.407139 GGGATAGCATTGGATGGCCT 59.593 55.0 3.32 0.0 34.31 5.19 F
537 543 0.685097 CGAGGGGGAGAAACACAAGA 59.315 55.0 0.00 0.0 0.00 3.02 F
1195 1202 2.142357 CTCAGACTCCGTCGTGGCAA 62.142 60.0 0.00 0.0 37.67 4.52 F
1923 1938 2.550830 AGTTTCACACCTAGCACCAG 57.449 50.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1256 1263 1.762708 CATTACCACATCCACCACCC 58.237 55.00 0.00 0.00 0.00 4.61 R
2210 2566 5.126061 CACCTTCCTCATTGACCTAAAATGG 59.874 44.00 0.00 0.00 36.01 3.16 R
2781 3751 5.105269 TGCACAAACATCAGATAATTGCCAT 60.105 36.00 7.09 0.00 0.00 4.40 R
2782 3752 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.50 7.09 3.62 0.00 4.92 R
2783 3753 4.746729 TGCACAAACATCAGATAATTGCC 58.253 39.13 7.09 1.70 0.00 4.52 R
2793 3763 5.473162 ACAGCTAAGTAATGCACAAACATCA 59.527 36.00 0.00 0.00 0.00 3.07 R
3298 4280 0.035458 GATGGGACCCATAGCCTTCG 59.965 60.00 26.61 0.00 45.26 3.79 R
3531 4514 5.452496 GCATATCTGACCTGCTTCTAGACAA 60.452 44.00 0.00 0.00 33.15 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.116878 GAAGGTGGAGATCGCAGC 57.883 61.111 0.00 0.00 0.00 5.25
18 19 1.522580 GAAGGTGGAGATCGCAGCC 60.523 63.158 0.00 0.00 0.00 4.85
20 21 1.841302 AAGGTGGAGATCGCAGCCAA 61.841 55.000 10.20 0.00 32.68 4.52
23 24 0.674895 GTGGAGATCGCAGCCAACTT 60.675 55.000 0.00 0.00 32.68 2.66
24 25 0.391661 TGGAGATCGCAGCCAACTTC 60.392 55.000 0.00 0.00 0.00 3.01
25 26 1.424493 GGAGATCGCAGCCAACTTCG 61.424 60.000 0.00 0.00 33.54 3.79
26 27 1.424493 GAGATCGCAGCCAACTTCGG 61.424 60.000 0.00 0.00 33.06 4.30
28 29 1.424493 GATCGCAGCCAACTTCGGAG 61.424 60.000 0.00 0.00 33.06 4.63
30 31 2.347490 GCAGCCAACTTCGGAGGA 59.653 61.111 0.00 0.00 0.00 3.71
31 32 1.078143 GCAGCCAACTTCGGAGGAT 60.078 57.895 0.00 0.00 0.00 3.24
32 33 1.372087 GCAGCCAACTTCGGAGGATG 61.372 60.000 0.00 0.00 41.55 3.51
33 34 1.078143 AGCCAACTTCGGAGGATGC 60.078 57.895 0.00 0.00 0.00 3.91
34 35 1.377202 GCCAACTTCGGAGGATGCA 60.377 57.895 0.00 0.00 0.00 3.96
35 36 0.960364 GCCAACTTCGGAGGATGCAA 60.960 55.000 0.00 0.00 0.00 4.08
36 37 1.533625 CCAACTTCGGAGGATGCAAA 58.466 50.000 0.00 0.00 0.00 3.68
37 38 1.470098 CCAACTTCGGAGGATGCAAAG 59.530 52.381 0.00 0.00 0.00 2.77
38 39 2.426522 CAACTTCGGAGGATGCAAAGA 58.573 47.619 0.00 0.00 0.00 2.52
39 40 3.012518 CAACTTCGGAGGATGCAAAGAT 58.987 45.455 0.00 0.00 0.00 2.40
40 41 2.636830 ACTTCGGAGGATGCAAAGATG 58.363 47.619 0.00 0.00 0.00 2.90
53 54 3.063510 CAAAGATGCTCACCCTGAAGA 57.936 47.619 0.00 0.00 0.00 2.87
54 55 3.618351 CAAAGATGCTCACCCTGAAGAT 58.382 45.455 0.00 0.00 0.00 2.40
55 56 3.278668 AAGATGCTCACCCTGAAGATG 57.721 47.619 0.00 0.00 0.00 2.90
56 57 2.475155 AGATGCTCACCCTGAAGATGA 58.525 47.619 0.00 0.00 0.00 2.92
57 58 2.842496 AGATGCTCACCCTGAAGATGAA 59.158 45.455 0.00 0.00 0.00 2.57
58 59 2.775911 TGCTCACCCTGAAGATGAAG 57.224 50.000 0.00 0.00 0.00 3.02
59 60 2.259917 TGCTCACCCTGAAGATGAAGA 58.740 47.619 0.00 0.00 0.00 2.87
60 61 2.639347 TGCTCACCCTGAAGATGAAGAA 59.361 45.455 0.00 0.00 0.00 2.52
61 62 3.265221 TGCTCACCCTGAAGATGAAGAAT 59.735 43.478 0.00 0.00 0.00 2.40
62 63 4.263639 TGCTCACCCTGAAGATGAAGAATT 60.264 41.667 0.00 0.00 0.00 2.17
63 64 4.704057 GCTCACCCTGAAGATGAAGAATTT 59.296 41.667 0.00 0.00 0.00 1.82
64 65 5.882557 GCTCACCCTGAAGATGAAGAATTTA 59.117 40.000 0.00 0.00 0.00 1.40
65 66 6.038050 GCTCACCCTGAAGATGAAGAATTTAG 59.962 42.308 0.00 0.00 0.00 1.85
66 67 7.257790 TCACCCTGAAGATGAAGAATTTAGA 57.742 36.000 0.00 0.00 0.00 2.10
67 68 7.106239 TCACCCTGAAGATGAAGAATTTAGAC 58.894 38.462 0.00 0.00 0.00 2.59
68 69 6.036517 CACCCTGAAGATGAAGAATTTAGACG 59.963 42.308 0.00 0.00 0.00 4.18
69 70 6.070767 ACCCTGAAGATGAAGAATTTAGACGA 60.071 38.462 0.00 0.00 0.00 4.20
70 71 6.818644 CCCTGAAGATGAAGAATTTAGACGAA 59.181 38.462 0.00 0.00 0.00 3.85
71 72 7.010923 CCCTGAAGATGAAGAATTTAGACGAAG 59.989 40.741 0.00 0.00 0.00 3.79
72 73 7.761704 CCTGAAGATGAAGAATTTAGACGAAGA 59.238 37.037 0.00 0.00 0.00 2.87
73 74 8.467402 TGAAGATGAAGAATTTAGACGAAGAC 57.533 34.615 0.00 0.00 0.00 3.01
74 75 7.273598 TGAAGATGAAGAATTTAGACGAAGACG 59.726 37.037 0.00 0.00 45.75 4.18
75 76 5.517054 AGATGAAGAATTTAGACGAAGACGC 59.483 40.000 0.00 0.00 43.96 5.19
76 77 4.552355 TGAAGAATTTAGACGAAGACGCA 58.448 39.130 0.00 0.00 43.96 5.24
77 78 4.986034 TGAAGAATTTAGACGAAGACGCAA 59.014 37.500 0.00 0.00 43.96 4.85
78 79 5.464057 TGAAGAATTTAGACGAAGACGCAAA 59.536 36.000 0.00 0.00 43.96 3.68
79 80 5.517037 AGAATTTAGACGAAGACGCAAAG 57.483 39.130 0.00 0.00 43.96 2.77
80 81 4.389077 AGAATTTAGACGAAGACGCAAAGG 59.611 41.667 0.00 0.00 43.96 3.11
81 82 3.374220 TTTAGACGAAGACGCAAAGGA 57.626 42.857 0.00 0.00 43.96 3.36
82 83 3.587797 TTAGACGAAGACGCAAAGGAT 57.412 42.857 0.00 0.00 43.96 3.24
83 84 1.714794 AGACGAAGACGCAAAGGATG 58.285 50.000 0.00 0.00 43.96 3.51
84 85 1.272490 AGACGAAGACGCAAAGGATGA 59.728 47.619 0.00 0.00 43.96 2.92
85 86 2.093973 AGACGAAGACGCAAAGGATGAT 60.094 45.455 0.00 0.00 43.96 2.45
86 87 2.673368 GACGAAGACGCAAAGGATGATT 59.327 45.455 0.00 0.00 43.96 2.57
87 88 2.416547 ACGAAGACGCAAAGGATGATTG 59.583 45.455 0.00 0.00 43.96 2.67
88 89 2.416547 CGAAGACGCAAAGGATGATTGT 59.583 45.455 0.00 0.00 0.00 2.71
89 90 3.725895 CGAAGACGCAAAGGATGATTGTG 60.726 47.826 0.00 0.00 42.48 3.33
90 91 1.470098 AGACGCAAAGGATGATTGTGC 59.530 47.619 0.16 0.00 40.93 4.57
91 92 1.199789 GACGCAAAGGATGATTGTGCA 59.800 47.619 0.16 0.00 40.93 4.57
92 93 1.612950 ACGCAAAGGATGATTGTGCAA 59.387 42.857 0.00 0.00 40.93 4.08
93 94 2.256174 CGCAAAGGATGATTGTGCAAG 58.744 47.619 0.00 0.00 34.87 4.01
94 95 1.997606 GCAAAGGATGATTGTGCAAGC 59.002 47.619 0.00 0.00 35.28 4.01
95 96 2.613691 CAAAGGATGATTGTGCAAGCC 58.386 47.619 0.00 0.00 0.00 4.35
96 97 1.927487 AAGGATGATTGTGCAAGCCA 58.073 45.000 0.00 0.00 0.00 4.75
97 98 2.154567 AGGATGATTGTGCAAGCCAT 57.845 45.000 0.00 0.94 0.00 4.40
98 99 2.029623 AGGATGATTGTGCAAGCCATC 58.970 47.619 15.45 15.45 35.47 3.51
99 100 1.068127 GGATGATTGTGCAAGCCATCC 59.932 52.381 21.73 21.73 42.08 3.51
100 101 1.752498 GATGATTGTGCAAGCCATCCA 59.248 47.619 13.97 0.00 32.75 3.41
101 102 1.855295 TGATTGTGCAAGCCATCCAT 58.145 45.000 0.00 0.00 0.00 3.41
102 103 2.181125 TGATTGTGCAAGCCATCCATT 58.819 42.857 0.00 0.00 0.00 3.16
103 104 2.568062 TGATTGTGCAAGCCATCCATTT 59.432 40.909 0.00 0.00 0.00 2.32
104 105 2.747396 TTGTGCAAGCCATCCATTTC 57.253 45.000 0.00 0.00 0.00 2.17
105 106 1.630223 TGTGCAAGCCATCCATTTCA 58.370 45.000 0.00 0.00 0.00 2.69
106 107 1.969208 TGTGCAAGCCATCCATTTCAA 59.031 42.857 0.00 0.00 0.00 2.69
107 108 2.028839 TGTGCAAGCCATCCATTTCAAG 60.029 45.455 0.00 0.00 0.00 3.02
108 109 2.231964 GTGCAAGCCATCCATTTCAAGA 59.768 45.455 0.00 0.00 0.00 3.02
109 110 3.101437 TGCAAGCCATCCATTTCAAGAT 58.899 40.909 0.00 0.00 0.00 2.40
110 111 3.118920 TGCAAGCCATCCATTTCAAGATG 60.119 43.478 0.00 0.00 39.69 2.90
111 112 3.118884 GCAAGCCATCCATTTCAAGATGT 60.119 43.478 0.00 0.00 38.57 3.06
112 113 4.622220 GCAAGCCATCCATTTCAAGATGTT 60.622 41.667 0.00 0.00 38.57 2.71
113 114 4.730949 AGCCATCCATTTCAAGATGTTG 57.269 40.909 0.00 0.00 38.57 3.33
114 115 3.118884 AGCCATCCATTTCAAGATGTTGC 60.119 43.478 0.00 0.00 38.57 4.17
115 116 3.368635 GCCATCCATTTCAAGATGTTGCA 60.369 43.478 0.00 0.00 38.57 4.08
116 117 4.823157 CCATCCATTTCAAGATGTTGCAA 58.177 39.130 0.00 0.00 38.57 4.08
117 118 4.628333 CCATCCATTTCAAGATGTTGCAAC 59.372 41.667 22.83 22.83 38.57 4.17
118 119 3.899734 TCCATTTCAAGATGTTGCAACG 58.100 40.909 23.79 9.87 33.23 4.10
119 120 2.988493 CCATTTCAAGATGTTGCAACGG 59.012 45.455 23.79 11.20 33.23 4.44
120 121 2.132740 TTTCAAGATGTTGCAACGGC 57.867 45.000 23.79 17.57 41.68 5.68
121 122 0.040514 TTCAAGATGTTGCAACGGCG 60.041 50.000 23.79 4.80 45.35 6.46
122 123 1.442520 CAAGATGTTGCAACGGCGG 60.443 57.895 23.79 12.01 45.35 6.13
123 124 1.599518 AAGATGTTGCAACGGCGGA 60.600 52.632 23.79 7.06 45.35 5.54
124 125 1.169661 AAGATGTTGCAACGGCGGAA 61.170 50.000 23.79 6.29 45.35 4.30
125 126 1.154225 GATGTTGCAACGGCGGAAG 60.154 57.895 23.79 0.82 45.35 3.46
126 127 2.527547 GATGTTGCAACGGCGGAAGG 62.528 60.000 23.79 0.00 45.35 3.46
127 128 2.975799 GTTGCAACGGCGGAAGGA 60.976 61.111 14.90 0.00 45.35 3.36
128 129 2.033448 TTGCAACGGCGGAAGGAT 59.967 55.556 13.24 0.00 45.35 3.24
129 130 2.331893 TTGCAACGGCGGAAGGATG 61.332 57.895 13.24 1.25 45.35 3.51
130 131 2.435938 GCAACGGCGGAAGGATGA 60.436 61.111 13.24 0.00 0.00 2.92
131 132 2.464459 GCAACGGCGGAAGGATGAG 61.464 63.158 13.24 0.00 0.00 2.90
132 133 1.079127 CAACGGCGGAAGGATGAGT 60.079 57.895 13.24 0.00 0.00 3.41
133 134 0.673644 CAACGGCGGAAGGATGAGTT 60.674 55.000 13.24 0.00 0.00 3.01
134 135 0.673644 AACGGCGGAAGGATGAGTTG 60.674 55.000 13.24 0.00 0.00 3.16
135 136 1.815421 CGGCGGAAGGATGAGTTGG 60.815 63.158 0.00 0.00 0.00 3.77
136 137 1.602237 GGCGGAAGGATGAGTTGGA 59.398 57.895 0.00 0.00 0.00 3.53
137 138 0.462759 GGCGGAAGGATGAGTTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
138 139 0.537188 GCGGAAGGATGAGTTGGAGA 59.463 55.000 0.00 0.00 0.00 3.71
139 140 1.472376 GCGGAAGGATGAGTTGGAGAG 60.472 57.143 0.00 0.00 0.00 3.20
140 141 1.137872 CGGAAGGATGAGTTGGAGAGG 59.862 57.143 0.00 0.00 0.00 3.69
141 142 1.488393 GGAAGGATGAGTTGGAGAGGG 59.512 57.143 0.00 0.00 0.00 4.30
142 143 0.915364 AAGGATGAGTTGGAGAGGGC 59.085 55.000 0.00 0.00 0.00 5.19
143 144 1.144936 GGATGAGTTGGAGAGGGCG 59.855 63.158 0.00 0.00 0.00 6.13
144 145 1.144936 GATGAGTTGGAGAGGGCGG 59.855 63.158 0.00 0.00 0.00 6.13
145 146 1.306141 ATGAGTTGGAGAGGGCGGA 60.306 57.895 0.00 0.00 0.00 5.54
146 147 1.617947 ATGAGTTGGAGAGGGCGGAC 61.618 60.000 0.00 0.00 0.00 4.79
147 148 3.358076 GAGTTGGAGAGGGCGGACG 62.358 68.421 0.00 0.00 0.00 4.79
164 165 4.821589 GCGGCGGAGAAGGACAGG 62.822 72.222 9.78 0.00 0.00 4.00
165 166 4.148825 CGGCGGAGAAGGACAGGG 62.149 72.222 0.00 0.00 0.00 4.45
166 167 3.787001 GGCGGAGAAGGACAGGGG 61.787 72.222 0.00 0.00 0.00 4.79
167 168 3.003763 GCGGAGAAGGACAGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
168 169 3.020237 GCGGAGAAGGACAGGGGTC 62.020 68.421 0.00 0.00 43.55 4.46
169 170 1.609501 CGGAGAAGGACAGGGGTCA 60.610 63.158 0.00 0.00 46.17 4.02
170 171 1.608717 CGGAGAAGGACAGGGGTCAG 61.609 65.000 0.00 0.00 46.17 3.51
171 172 1.599576 GAGAAGGACAGGGGTCAGC 59.400 63.158 0.00 0.00 46.17 4.26
172 173 1.904990 GAGAAGGACAGGGGTCAGCC 61.905 65.000 0.00 0.00 46.17 4.85
173 174 3.316573 GAAGGACAGGGGTCAGCCG 62.317 68.421 0.00 0.00 46.17 5.52
174 175 3.846405 AAGGACAGGGGTCAGCCGA 62.846 63.158 0.00 0.00 46.17 5.54
175 176 3.775654 GGACAGGGGTCAGCCGAG 61.776 72.222 0.00 0.00 46.17 4.63
176 177 2.680352 GACAGGGGTCAGCCGAGA 60.680 66.667 0.00 0.00 43.73 4.04
177 178 2.997897 ACAGGGGTCAGCCGAGAC 60.998 66.667 0.00 0.00 37.80 3.36
178 179 4.135153 CAGGGGTCAGCCGAGACG 62.135 72.222 0.00 0.00 39.42 4.18
188 189 4.233635 CCGAGACGGTAGCGACGG 62.234 72.222 22.88 24.73 42.73 4.79
189 190 4.883300 CGAGACGGTAGCGACGGC 62.883 72.222 22.88 11.43 40.35 5.68
190 191 3.807538 GAGACGGTAGCGACGGCA 61.808 66.667 22.88 0.00 43.13 5.69
191 192 3.736482 GAGACGGTAGCGACGGCAG 62.736 68.421 22.88 0.00 43.13 4.85
192 193 3.807538 GACGGTAGCGACGGCAGA 61.808 66.667 22.88 0.00 43.41 4.26
193 194 3.122250 GACGGTAGCGACGGCAGAT 62.122 63.158 22.88 0.00 43.41 2.90
194 195 2.104331 CGGTAGCGACGGCAGATT 59.896 61.111 9.07 0.00 43.41 2.40
195 196 1.357690 CGGTAGCGACGGCAGATTA 59.642 57.895 9.07 0.00 43.41 1.75
196 197 0.248743 CGGTAGCGACGGCAGATTAA 60.249 55.000 9.07 0.00 43.41 1.40
197 198 1.488527 GGTAGCGACGGCAGATTAAG 58.511 55.000 0.00 0.00 43.41 1.85
198 199 0.853419 GTAGCGACGGCAGATTAAGC 59.147 55.000 0.00 0.00 43.41 3.09
199 200 0.594028 TAGCGACGGCAGATTAAGCG 60.594 55.000 0.00 0.00 43.41 4.68
200 201 2.165301 GCGACGGCAGATTAAGCGT 61.165 57.895 0.00 0.00 39.62 5.07
201 202 1.631072 CGACGGCAGATTAAGCGTG 59.369 57.895 0.00 0.00 0.00 5.34
202 203 1.752501 CGACGGCAGATTAAGCGTGG 61.753 60.000 0.00 0.00 0.00 4.94
203 204 0.459585 GACGGCAGATTAAGCGTGGA 60.460 55.000 0.00 0.00 0.00 4.02
204 205 0.460284 ACGGCAGATTAAGCGTGGAG 60.460 55.000 0.00 0.00 0.00 3.86
205 206 1.154205 CGGCAGATTAAGCGTGGAGG 61.154 60.000 0.00 0.00 0.00 4.30
206 207 1.440145 GGCAGATTAAGCGTGGAGGC 61.440 60.000 0.00 0.00 0.00 4.70
213 214 3.081554 AGCGTGGAGGCTTGGATT 58.918 55.556 0.00 0.00 41.39 3.01
214 215 1.377725 AGCGTGGAGGCTTGGATTG 60.378 57.895 0.00 0.00 41.39 2.67
215 216 1.377202 GCGTGGAGGCTTGGATTGA 60.377 57.895 0.00 0.00 0.00 2.57
216 217 1.648467 GCGTGGAGGCTTGGATTGAC 61.648 60.000 0.00 0.00 0.00 3.18
217 218 0.036010 CGTGGAGGCTTGGATTGACT 60.036 55.000 0.00 0.00 0.00 3.41
218 219 1.457346 GTGGAGGCTTGGATTGACTG 58.543 55.000 0.00 0.00 0.00 3.51
219 220 1.067295 TGGAGGCTTGGATTGACTGT 58.933 50.000 0.00 0.00 0.00 3.55
220 221 1.003580 TGGAGGCTTGGATTGACTGTC 59.996 52.381 0.00 0.00 0.00 3.51
221 222 1.280421 GGAGGCTTGGATTGACTGTCT 59.720 52.381 9.51 0.00 0.00 3.41
222 223 2.354259 GAGGCTTGGATTGACTGTCTG 58.646 52.381 9.51 0.00 0.00 3.51
223 224 1.980765 AGGCTTGGATTGACTGTCTGA 59.019 47.619 9.51 0.00 0.00 3.27
224 225 2.079925 GGCTTGGATTGACTGTCTGAC 58.920 52.381 9.51 0.00 0.00 3.51
225 226 2.550855 GGCTTGGATTGACTGTCTGACA 60.551 50.000 10.50 10.50 0.00 3.58
245 246 2.789409 GGGCAGACCTGACTTGTATT 57.211 50.000 2.56 0.00 39.02 1.89
246 247 2.633488 GGGCAGACCTGACTTGTATTC 58.367 52.381 2.56 0.00 39.02 1.75
247 248 2.237392 GGGCAGACCTGACTTGTATTCT 59.763 50.000 2.56 0.00 39.02 2.40
248 249 3.307762 GGGCAGACCTGACTTGTATTCTT 60.308 47.826 2.56 0.00 39.02 2.52
249 250 4.327680 GGCAGACCTGACTTGTATTCTTT 58.672 43.478 0.47 0.00 35.21 2.52
250 251 4.393371 GGCAGACCTGACTTGTATTCTTTC 59.607 45.833 0.47 0.00 35.21 2.62
251 252 4.092091 GCAGACCTGACTTGTATTCTTTCG 59.908 45.833 0.47 0.00 0.00 3.46
252 253 5.230942 CAGACCTGACTTGTATTCTTTCGT 58.769 41.667 0.00 0.00 0.00 3.85
253 254 5.119279 CAGACCTGACTTGTATTCTTTCGTG 59.881 44.000 0.00 0.00 0.00 4.35
254 255 4.315803 ACCTGACTTGTATTCTTTCGTGG 58.684 43.478 0.00 0.00 0.00 4.94
255 256 3.125316 CCTGACTTGTATTCTTTCGTGGC 59.875 47.826 0.00 0.00 0.00 5.01
256 257 3.071479 TGACTTGTATTCTTTCGTGGCC 58.929 45.455 0.00 0.00 0.00 5.36
257 258 2.073816 ACTTGTATTCTTTCGTGGCCG 58.926 47.619 0.00 0.00 0.00 6.13
258 259 2.289195 ACTTGTATTCTTTCGTGGCCGA 60.289 45.455 0.00 0.00 42.41 5.54
259 260 2.004583 TGTATTCTTTCGTGGCCGAG 57.995 50.000 0.00 0.00 45.24 4.63
260 261 0.651031 GTATTCTTTCGTGGCCGAGC 59.349 55.000 0.00 0.00 45.24 5.03
261 262 0.248012 TATTCTTTCGTGGCCGAGCA 59.752 50.000 0.00 0.00 45.24 4.26
262 263 0.605319 ATTCTTTCGTGGCCGAGCAA 60.605 50.000 0.00 0.00 45.24 3.91
263 264 1.227999 TTCTTTCGTGGCCGAGCAAG 61.228 55.000 0.00 0.34 45.24 4.01
264 265 1.961277 CTTTCGTGGCCGAGCAAGT 60.961 57.895 0.00 0.00 45.24 3.16
265 266 0.669318 CTTTCGTGGCCGAGCAAGTA 60.669 55.000 0.00 0.00 45.24 2.24
266 267 0.249953 TTTCGTGGCCGAGCAAGTAA 60.250 50.000 0.00 0.00 45.24 2.24
267 268 0.249953 TTCGTGGCCGAGCAAGTAAA 60.250 50.000 0.00 0.00 45.24 2.01
268 269 0.249953 TCGTGGCCGAGCAAGTAAAA 60.250 50.000 0.00 0.00 38.40 1.52
269 270 0.589223 CGTGGCCGAGCAAGTAAAAA 59.411 50.000 0.00 0.00 35.63 1.94
270 271 1.662026 CGTGGCCGAGCAAGTAAAAAC 60.662 52.381 0.00 0.00 35.63 2.43
271 272 1.607148 GTGGCCGAGCAAGTAAAAACT 59.393 47.619 0.00 0.00 0.00 2.66
272 273 2.809696 GTGGCCGAGCAAGTAAAAACTA 59.190 45.455 0.00 0.00 0.00 2.24
273 274 3.251487 GTGGCCGAGCAAGTAAAAACTAA 59.749 43.478 0.00 0.00 0.00 2.24
274 275 3.500680 TGGCCGAGCAAGTAAAAACTAAG 59.499 43.478 0.00 0.00 0.00 2.18
275 276 3.501062 GGCCGAGCAAGTAAAAACTAAGT 59.499 43.478 0.00 0.00 0.00 2.24
276 277 4.692155 GGCCGAGCAAGTAAAAACTAAGTA 59.308 41.667 0.00 0.00 0.00 2.24
277 278 5.353400 GGCCGAGCAAGTAAAAACTAAGTAT 59.647 40.000 0.00 0.00 0.00 2.12
278 279 6.536224 GGCCGAGCAAGTAAAAACTAAGTATA 59.464 38.462 0.00 0.00 0.00 1.47
279 280 7.397194 GCCGAGCAAGTAAAAACTAAGTATAC 58.603 38.462 0.00 0.00 0.00 1.47
280 281 7.277319 GCCGAGCAAGTAAAAACTAAGTATACT 59.723 37.037 0.00 0.00 0.00 2.12
281 282 9.148104 CCGAGCAAGTAAAAACTAAGTATACTT 57.852 33.333 21.35 21.35 37.30 2.24
298 299 8.919777 AGTATACTTGCCTTTTTCTTAGTTGT 57.080 30.769 0.00 0.00 0.00 3.32
299 300 8.784043 AGTATACTTGCCTTTTTCTTAGTTGTG 58.216 33.333 0.00 0.00 0.00 3.33
300 301 7.817418 ATACTTGCCTTTTTCTTAGTTGTGA 57.183 32.000 0.00 0.00 0.00 3.58
301 302 6.715347 ACTTGCCTTTTTCTTAGTTGTGAT 57.285 33.333 0.00 0.00 0.00 3.06
302 303 6.739112 ACTTGCCTTTTTCTTAGTTGTGATC 58.261 36.000 0.00 0.00 0.00 2.92
303 304 6.321181 ACTTGCCTTTTTCTTAGTTGTGATCA 59.679 34.615 0.00 0.00 0.00 2.92
304 305 6.317789 TGCCTTTTTCTTAGTTGTGATCAG 57.682 37.500 0.00 0.00 0.00 2.90
305 306 6.061441 TGCCTTTTTCTTAGTTGTGATCAGA 58.939 36.000 0.00 0.00 0.00 3.27
306 307 6.017109 TGCCTTTTTCTTAGTTGTGATCAGAC 60.017 38.462 0.00 0.00 0.00 3.51
307 308 6.593978 CCTTTTTCTTAGTTGTGATCAGACG 58.406 40.000 0.00 0.00 0.00 4.18
308 309 6.423905 CCTTTTTCTTAGTTGTGATCAGACGA 59.576 38.462 0.00 0.00 0.00 4.20
309 310 7.118390 CCTTTTTCTTAGTTGTGATCAGACGAT 59.882 37.037 0.00 0.00 33.31 3.73
310 311 6.951256 TTTCTTAGTTGTGATCAGACGATG 57.049 37.500 0.00 0.00 29.66 3.84
311 312 5.897377 TCTTAGTTGTGATCAGACGATGA 57.103 39.130 0.00 0.19 43.70 2.92
320 321 2.781945 TCAGACGATGATGTGATCCG 57.218 50.000 0.00 0.00 31.12 4.18
321 322 1.338020 TCAGACGATGATGTGATCCGG 59.662 52.381 0.00 0.00 31.12 5.14
322 323 1.067669 CAGACGATGATGTGATCCGGT 59.932 52.381 0.00 0.00 0.00 5.28
323 324 1.067669 AGACGATGATGTGATCCGGTG 59.932 52.381 0.00 0.00 0.00 4.94
324 325 0.530650 ACGATGATGTGATCCGGTGC 60.531 55.000 0.00 0.00 0.00 5.01
325 326 0.249615 CGATGATGTGATCCGGTGCT 60.250 55.000 0.00 0.00 0.00 4.40
326 327 1.224075 GATGATGTGATCCGGTGCTG 58.776 55.000 0.00 0.00 0.00 4.41
327 328 0.816825 ATGATGTGATCCGGTGCTGC 60.817 55.000 0.00 0.00 0.00 5.25
328 329 1.153289 GATGTGATCCGGTGCTGCT 60.153 57.895 0.00 0.00 0.00 4.24
329 330 0.104855 GATGTGATCCGGTGCTGCTA 59.895 55.000 0.00 0.00 0.00 3.49
330 331 0.761187 ATGTGATCCGGTGCTGCTAT 59.239 50.000 0.00 0.00 0.00 2.97
331 332 0.179076 TGTGATCCGGTGCTGCTATG 60.179 55.000 0.00 0.00 0.00 2.23
332 333 0.104855 GTGATCCGGTGCTGCTATGA 59.895 55.000 0.00 0.00 0.00 2.15
333 334 0.390492 TGATCCGGTGCTGCTATGAG 59.610 55.000 0.00 0.00 0.00 2.90
334 335 0.676184 GATCCGGTGCTGCTATGAGA 59.324 55.000 0.00 0.00 0.00 3.27
335 336 1.274728 GATCCGGTGCTGCTATGAGAT 59.725 52.381 0.00 0.00 0.00 2.75
336 337 0.676184 TCCGGTGCTGCTATGAGATC 59.324 55.000 0.00 0.00 0.00 2.75
337 338 0.320247 CCGGTGCTGCTATGAGATCC 60.320 60.000 0.00 0.00 0.00 3.36
338 339 0.665670 CGGTGCTGCTATGAGATCCG 60.666 60.000 0.00 0.00 0.00 4.18
339 340 0.676184 GGTGCTGCTATGAGATCCGA 59.324 55.000 0.00 0.00 0.00 4.55
340 341 1.604185 GGTGCTGCTATGAGATCCGAC 60.604 57.143 0.00 0.00 0.00 4.79
341 342 0.312102 TGCTGCTATGAGATCCGACG 59.688 55.000 0.00 0.00 0.00 5.12
342 343 1.006314 GCTGCTATGAGATCCGACGC 61.006 60.000 0.00 0.00 0.00 5.19
343 344 0.727457 CTGCTATGAGATCCGACGCG 60.727 60.000 3.53 3.53 0.00 6.01
344 345 2.083522 GCTATGAGATCCGACGCGC 61.084 63.158 5.73 0.00 0.00 6.86
345 346 1.282875 CTATGAGATCCGACGCGCA 59.717 57.895 5.73 0.00 0.00 6.09
346 347 0.999228 CTATGAGATCCGACGCGCAC 60.999 60.000 5.73 0.00 0.00 5.34
347 348 1.444917 TATGAGATCCGACGCGCACT 61.445 55.000 5.73 0.00 0.00 4.40
348 349 2.202623 GAGATCCGACGCGCACTT 60.203 61.111 5.73 0.00 0.00 3.16
349 350 1.805945 GAGATCCGACGCGCACTTT 60.806 57.895 5.73 0.00 0.00 2.66
350 351 1.743855 GAGATCCGACGCGCACTTTC 61.744 60.000 5.73 0.00 0.00 2.62
351 352 1.805945 GATCCGACGCGCACTTTCT 60.806 57.895 5.73 0.00 0.00 2.52
352 353 1.743855 GATCCGACGCGCACTTTCTC 61.744 60.000 5.73 0.00 0.00 2.87
353 354 2.486636 ATCCGACGCGCACTTTCTCA 62.487 55.000 5.73 0.00 0.00 3.27
354 355 2.720758 CCGACGCGCACTTTCTCAG 61.721 63.158 5.73 0.00 0.00 3.35
355 356 1.729484 CGACGCGCACTTTCTCAGA 60.729 57.895 5.73 0.00 0.00 3.27
356 357 1.775962 GACGCGCACTTTCTCAGAC 59.224 57.895 5.73 0.00 0.00 3.51
357 358 0.939577 GACGCGCACTTTCTCAGACA 60.940 55.000 5.73 0.00 0.00 3.41
358 359 0.529773 ACGCGCACTTTCTCAGACAA 60.530 50.000 5.73 0.00 0.00 3.18
359 360 0.581529 CGCGCACTTTCTCAGACAAA 59.418 50.000 8.75 0.00 0.00 2.83
360 361 1.195448 CGCGCACTTTCTCAGACAAAT 59.805 47.619 8.75 0.00 0.00 2.32
361 362 2.349817 CGCGCACTTTCTCAGACAAATT 60.350 45.455 8.75 0.00 0.00 1.82
362 363 3.632189 GCGCACTTTCTCAGACAAATTT 58.368 40.909 0.30 0.00 0.00 1.82
363 364 4.610456 CGCGCACTTTCTCAGACAAATTTA 60.610 41.667 8.75 0.00 0.00 1.40
364 365 5.212194 GCGCACTTTCTCAGACAAATTTAA 58.788 37.500 0.30 0.00 0.00 1.52
365 366 5.685511 GCGCACTTTCTCAGACAAATTTAAA 59.314 36.000 0.30 0.00 0.00 1.52
366 367 6.363357 GCGCACTTTCTCAGACAAATTTAAAT 59.637 34.615 0.30 0.00 0.00 1.40
367 368 7.096065 GCGCACTTTCTCAGACAAATTTAAATT 60.096 33.333 7.64 7.64 0.00 1.82
368 369 8.755018 CGCACTTTCTCAGACAAATTTAAATTT 58.245 29.630 18.40 18.40 39.07 1.82
397 398 9.651913 AATTTAATTTACTTGTGCTTGTATGGG 57.348 29.630 0.00 0.00 0.00 4.00
398 399 5.659440 AATTTACTTGTGCTTGTATGGGG 57.341 39.130 0.00 0.00 0.00 4.96
399 400 4.374689 TTTACTTGTGCTTGTATGGGGA 57.625 40.909 0.00 0.00 0.00 4.81
400 401 4.584638 TTACTTGTGCTTGTATGGGGAT 57.415 40.909 0.00 0.00 0.00 3.85
401 402 5.702065 TTACTTGTGCTTGTATGGGGATA 57.298 39.130 0.00 0.00 0.00 2.59
402 403 4.156455 ACTTGTGCTTGTATGGGGATAG 57.844 45.455 0.00 0.00 0.00 2.08
403 404 2.638480 TGTGCTTGTATGGGGATAGC 57.362 50.000 0.00 0.00 0.00 2.97
404 405 1.843206 TGTGCTTGTATGGGGATAGCA 59.157 47.619 0.00 0.00 39.35 3.49
405 406 2.442878 TGTGCTTGTATGGGGATAGCAT 59.557 45.455 0.00 0.00 43.01 3.79
406 407 3.117550 TGTGCTTGTATGGGGATAGCATT 60.118 43.478 0.00 0.00 43.01 3.56
407 408 3.254166 GTGCTTGTATGGGGATAGCATTG 59.746 47.826 0.00 0.00 43.01 2.82
408 409 2.821969 GCTTGTATGGGGATAGCATTGG 59.178 50.000 0.00 0.00 0.00 3.16
409 410 3.498481 GCTTGTATGGGGATAGCATTGGA 60.498 47.826 0.00 0.00 0.00 3.53
410 411 4.812096 GCTTGTATGGGGATAGCATTGGAT 60.812 45.833 0.00 0.00 0.00 3.41
411 412 4.305539 TGTATGGGGATAGCATTGGATG 57.694 45.455 0.00 0.00 0.00 3.51
412 413 2.913603 ATGGGGATAGCATTGGATGG 57.086 50.000 0.00 0.00 0.00 3.51
413 414 0.112995 TGGGGATAGCATTGGATGGC 59.887 55.000 0.00 0.00 0.00 4.40
414 415 0.613012 GGGGATAGCATTGGATGGCC 60.613 60.000 0.00 0.00 0.00 5.36
415 416 0.407139 GGGATAGCATTGGATGGCCT 59.593 55.000 3.32 0.00 34.31 5.19
416 417 1.542492 GGATAGCATTGGATGGCCTG 58.458 55.000 3.32 0.00 34.31 4.85
417 418 0.886563 GATAGCATTGGATGGCCTGC 59.113 55.000 3.32 3.88 36.02 4.85
418 419 0.892358 ATAGCATTGGATGGCCTGCG 60.892 55.000 3.32 0.00 39.60 5.18
419 420 2.963928 TAGCATTGGATGGCCTGCGG 62.964 60.000 3.32 0.00 39.60 5.69
430 431 3.499737 CCTGCGGCATTCGTGTCC 61.500 66.667 1.75 0.00 41.72 4.02
431 432 3.853330 CTGCGGCATTCGTGTCCG 61.853 66.667 1.75 0.00 45.46 4.79
436 437 3.849953 GCATTCGTGTCCGCGGAC 61.850 66.667 43.88 43.88 44.77 4.79
451 452 4.927782 GACAGTGTGCGGTGCCCA 62.928 66.667 0.00 0.00 0.00 5.36
452 453 4.935495 ACAGTGTGCGGTGCCCAG 62.935 66.667 0.00 0.00 0.00 4.45
453 454 4.935495 CAGTGTGCGGTGCCCAGT 62.935 66.667 0.00 0.00 0.00 4.00
454 455 4.189580 AGTGTGCGGTGCCCAGTT 62.190 61.111 0.00 0.00 0.00 3.16
455 456 3.216292 GTGTGCGGTGCCCAGTTT 61.216 61.111 0.00 0.00 0.00 2.66
456 457 3.215568 TGTGCGGTGCCCAGTTTG 61.216 61.111 0.00 0.00 0.00 2.93
457 458 3.216292 GTGCGGTGCCCAGTTTGT 61.216 61.111 0.00 0.00 0.00 2.83
458 459 3.215568 TGCGGTGCCCAGTTTGTG 61.216 61.111 0.00 0.00 0.00 3.33
467 468 2.439837 CCAGTTTGTGGGGCAATGT 58.560 52.632 0.00 0.00 43.63 2.71
468 469 0.758123 CCAGTTTGTGGGGCAATGTT 59.242 50.000 0.00 0.00 43.63 2.71
469 470 1.540797 CCAGTTTGTGGGGCAATGTTG 60.541 52.381 0.00 0.00 43.63 3.33
470 471 1.411977 CAGTTTGTGGGGCAATGTTGA 59.588 47.619 0.00 0.00 36.89 3.18
471 472 2.114616 AGTTTGTGGGGCAATGTTGAA 58.885 42.857 0.00 0.00 36.89 2.69
472 473 2.102925 AGTTTGTGGGGCAATGTTGAAG 59.897 45.455 0.00 0.00 36.89 3.02
473 474 1.786937 TTGTGGGGCAATGTTGAAGT 58.213 45.000 0.00 0.00 31.07 3.01
474 475 1.327303 TGTGGGGCAATGTTGAAGTC 58.673 50.000 0.00 0.00 0.00 3.01
475 476 1.133513 TGTGGGGCAATGTTGAAGTCT 60.134 47.619 0.00 0.00 0.00 3.24
476 477 1.963515 GTGGGGCAATGTTGAAGTCTT 59.036 47.619 0.00 0.00 0.00 3.01
477 478 1.962807 TGGGGCAATGTTGAAGTCTTG 59.037 47.619 0.00 0.00 0.00 3.02
478 479 2.238521 GGGGCAATGTTGAAGTCTTGA 58.761 47.619 0.00 0.00 0.00 3.02
479 480 2.627699 GGGGCAATGTTGAAGTCTTGAA 59.372 45.455 0.00 0.00 0.00 2.69
480 481 3.305608 GGGGCAATGTTGAAGTCTTGAAG 60.306 47.826 0.00 0.00 0.00 3.02
481 482 3.569701 GGGCAATGTTGAAGTCTTGAAGA 59.430 43.478 0.00 0.00 0.00 2.87
482 483 4.540824 GGCAATGTTGAAGTCTTGAAGAC 58.459 43.478 17.22 17.22 45.38 3.01
537 543 0.685097 CGAGGGGGAGAAACACAAGA 59.315 55.000 0.00 0.00 0.00 3.02
735 741 2.161609 GCGATTCGTTTTCCCTTGTCAT 59.838 45.455 8.03 0.00 0.00 3.06
832 839 7.827236 TCCAAAAACGTCACATCCTATAAAGAT 59.173 33.333 0.00 0.00 0.00 2.40
1023 1030 4.335647 CAAGGTCGTGGGGCTGCT 62.336 66.667 0.00 0.00 0.00 4.24
1030 1037 4.082523 GTGGGGCTGCTGTCGCTA 62.083 66.667 13.21 0.00 36.97 4.26
1195 1202 2.142357 CTCAGACTCCGTCGTGGCAA 62.142 60.000 0.00 0.00 37.67 4.52
1923 1938 2.550830 AGTTTCACACCTAGCACCAG 57.449 50.000 0.00 0.00 0.00 4.00
2786 3756 8.800370 TGTTCATTACATTCTAGTAAATGGCA 57.200 30.769 8.55 0.00 40.28 4.92
2787 3757 9.237187 TGTTCATTACATTCTAGTAAATGGCAA 57.763 29.630 8.55 3.67 40.28 4.52
2795 3765 9.851686 ACATTCTAGTAAATGGCAATTATCTGA 57.148 29.630 8.55 0.00 40.28 3.27
3270 4252 4.436998 GGAGTGGGAGCGACGTGG 62.437 72.222 0.00 0.00 0.00 4.94
3550 4533 4.528206 TCAATTGTCTAGAAGCAGGTCAGA 59.472 41.667 5.13 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.424493 CGAAGTTGGCTGCGATCTCC 61.424 60.000 0.00 0.00 46.52 3.71
7 8 1.424493 CCGAAGTTGGCTGCGATCTC 61.424 60.000 0.00 0.00 46.52 2.75
8 9 1.448540 CCGAAGTTGGCTGCGATCT 60.449 57.895 0.00 0.00 46.52 2.75
9 10 1.424493 CTCCGAAGTTGGCTGCGATC 61.424 60.000 0.00 0.00 46.52 3.69
10 11 1.448540 CTCCGAAGTTGGCTGCGAT 60.449 57.895 0.00 0.00 46.52 4.58
11 12 2.048222 CTCCGAAGTTGGCTGCGA 60.048 61.111 0.00 0.00 46.52 5.10
12 13 2.859273 ATCCTCCGAAGTTGGCTGCG 62.859 60.000 0.00 0.00 43.29 5.18
13 14 1.078143 ATCCTCCGAAGTTGGCTGC 60.078 57.895 0.00 0.00 0.00 5.25
14 15 1.372087 GCATCCTCCGAAGTTGGCTG 61.372 60.000 0.00 0.00 0.00 4.85
16 17 0.960364 TTGCATCCTCCGAAGTTGGC 60.960 55.000 0.00 0.00 0.00 4.52
17 18 1.470098 CTTTGCATCCTCCGAAGTTGG 59.530 52.381 0.00 0.00 0.00 3.77
18 19 2.426522 TCTTTGCATCCTCCGAAGTTG 58.573 47.619 0.00 0.00 0.00 3.16
20 21 2.636830 CATCTTTGCATCCTCCGAAGT 58.363 47.619 0.00 0.00 0.00 3.01
33 34 3.063510 TCTTCAGGGTGAGCATCTTTG 57.936 47.619 0.00 0.00 34.92 2.77
34 35 3.265221 TCATCTTCAGGGTGAGCATCTTT 59.735 43.478 0.00 0.00 34.92 2.52
35 36 2.842496 TCATCTTCAGGGTGAGCATCTT 59.158 45.455 0.00 0.00 34.92 2.40
36 37 2.475155 TCATCTTCAGGGTGAGCATCT 58.525 47.619 0.00 0.00 34.92 2.90
37 38 2.996249 TCATCTTCAGGGTGAGCATC 57.004 50.000 0.00 0.00 0.00 3.91
38 39 2.842496 TCTTCATCTTCAGGGTGAGCAT 59.158 45.455 0.00 0.00 0.00 3.79
39 40 2.259917 TCTTCATCTTCAGGGTGAGCA 58.740 47.619 0.00 0.00 0.00 4.26
40 41 3.340814 TTCTTCATCTTCAGGGTGAGC 57.659 47.619 0.00 0.00 0.00 4.26
41 42 7.279758 GTCTAAATTCTTCATCTTCAGGGTGAG 59.720 40.741 0.00 0.00 0.00 3.51
42 43 7.106239 GTCTAAATTCTTCATCTTCAGGGTGA 58.894 38.462 0.00 0.00 0.00 4.02
43 44 6.036517 CGTCTAAATTCTTCATCTTCAGGGTG 59.963 42.308 0.00 0.00 0.00 4.61
44 45 6.070767 TCGTCTAAATTCTTCATCTTCAGGGT 60.071 38.462 0.00 0.00 0.00 4.34
45 46 6.341316 TCGTCTAAATTCTTCATCTTCAGGG 58.659 40.000 0.00 0.00 0.00 4.45
46 47 7.761704 TCTTCGTCTAAATTCTTCATCTTCAGG 59.238 37.037 0.00 0.00 0.00 3.86
47 48 8.591312 GTCTTCGTCTAAATTCTTCATCTTCAG 58.409 37.037 0.00 0.00 0.00 3.02
48 49 7.273598 CGTCTTCGTCTAAATTCTTCATCTTCA 59.726 37.037 0.00 0.00 0.00 3.02
49 50 7.605259 CGTCTTCGTCTAAATTCTTCATCTTC 58.395 38.462 0.00 0.00 0.00 2.87
50 51 6.035112 GCGTCTTCGTCTAAATTCTTCATCTT 59.965 38.462 0.00 0.00 39.49 2.40
51 52 5.517054 GCGTCTTCGTCTAAATTCTTCATCT 59.483 40.000 0.00 0.00 39.49 2.90
52 53 5.288712 TGCGTCTTCGTCTAAATTCTTCATC 59.711 40.000 0.00 0.00 39.49 2.92
53 54 5.168569 TGCGTCTTCGTCTAAATTCTTCAT 58.831 37.500 0.00 0.00 39.49 2.57
54 55 4.552355 TGCGTCTTCGTCTAAATTCTTCA 58.448 39.130 0.00 0.00 39.49 3.02
55 56 5.511088 TTGCGTCTTCGTCTAAATTCTTC 57.489 39.130 0.00 0.00 39.49 2.87
56 57 5.107065 CCTTTGCGTCTTCGTCTAAATTCTT 60.107 40.000 0.00 0.00 39.49 2.52
57 58 4.389077 CCTTTGCGTCTTCGTCTAAATTCT 59.611 41.667 0.00 0.00 39.49 2.40
58 59 4.387862 TCCTTTGCGTCTTCGTCTAAATTC 59.612 41.667 0.00 0.00 39.49 2.17
59 60 4.312443 TCCTTTGCGTCTTCGTCTAAATT 58.688 39.130 0.00 0.00 39.49 1.82
60 61 3.921677 TCCTTTGCGTCTTCGTCTAAAT 58.078 40.909 0.00 0.00 39.49 1.40
61 62 3.374220 TCCTTTGCGTCTTCGTCTAAA 57.626 42.857 0.00 0.00 39.49 1.85
62 63 3.057104 TCATCCTTTGCGTCTTCGTCTAA 60.057 43.478 0.00 0.00 39.49 2.10
63 64 2.490509 TCATCCTTTGCGTCTTCGTCTA 59.509 45.455 0.00 0.00 39.49 2.59
64 65 1.272490 TCATCCTTTGCGTCTTCGTCT 59.728 47.619 0.00 0.00 39.49 4.18
65 66 1.710013 TCATCCTTTGCGTCTTCGTC 58.290 50.000 0.00 0.00 39.49 4.20
66 67 2.386661 ATCATCCTTTGCGTCTTCGT 57.613 45.000 0.00 0.00 39.49 3.85
67 68 2.416547 ACAATCATCCTTTGCGTCTTCG 59.583 45.455 0.00 0.00 40.37 3.79
68 69 3.751621 CACAATCATCCTTTGCGTCTTC 58.248 45.455 0.00 0.00 0.00 2.87
69 70 2.095059 GCACAATCATCCTTTGCGTCTT 60.095 45.455 0.00 0.00 0.00 3.01
70 71 1.470098 GCACAATCATCCTTTGCGTCT 59.530 47.619 0.00 0.00 0.00 4.18
71 72 1.199789 TGCACAATCATCCTTTGCGTC 59.800 47.619 0.00 0.00 35.90 5.19
72 73 1.246649 TGCACAATCATCCTTTGCGT 58.753 45.000 0.00 0.00 35.90 5.24
73 74 2.256174 CTTGCACAATCATCCTTTGCG 58.744 47.619 0.00 0.00 35.90 4.85
74 75 1.997606 GCTTGCACAATCATCCTTTGC 59.002 47.619 0.00 0.00 0.00 3.68
75 76 2.028839 TGGCTTGCACAATCATCCTTTG 60.029 45.455 0.00 0.00 0.00 2.77
76 77 2.250031 TGGCTTGCACAATCATCCTTT 58.750 42.857 0.00 0.00 0.00 3.11
77 78 1.927487 TGGCTTGCACAATCATCCTT 58.073 45.000 0.00 0.00 0.00 3.36
78 79 2.029623 GATGGCTTGCACAATCATCCT 58.970 47.619 12.21 0.00 31.09 3.24
79 80 1.068127 GGATGGCTTGCACAATCATCC 59.932 52.381 20.33 20.33 40.40 3.51
80 81 1.752498 TGGATGGCTTGCACAATCATC 59.248 47.619 13.77 13.77 33.79 2.92
81 82 1.855295 TGGATGGCTTGCACAATCAT 58.145 45.000 0.00 0.00 0.00 2.45
82 83 1.855295 ATGGATGGCTTGCACAATCA 58.145 45.000 0.00 0.00 0.00 2.57
83 84 2.973694 AATGGATGGCTTGCACAATC 57.026 45.000 0.00 0.00 0.00 2.67
84 85 2.568062 TGAAATGGATGGCTTGCACAAT 59.432 40.909 0.00 0.00 0.00 2.71
85 86 1.969208 TGAAATGGATGGCTTGCACAA 59.031 42.857 0.00 0.00 0.00 3.33
86 87 1.630223 TGAAATGGATGGCTTGCACA 58.370 45.000 0.00 0.00 0.00 4.57
87 88 2.231964 TCTTGAAATGGATGGCTTGCAC 59.768 45.455 0.00 0.00 0.00 4.57
88 89 2.527497 TCTTGAAATGGATGGCTTGCA 58.473 42.857 0.00 0.00 0.00 4.08
89 90 3.118884 ACATCTTGAAATGGATGGCTTGC 60.119 43.478 7.65 0.00 42.34 4.01
90 91 4.730949 ACATCTTGAAATGGATGGCTTG 57.269 40.909 7.65 0.00 42.34 4.01
91 92 4.622220 GCAACATCTTGAAATGGATGGCTT 60.622 41.667 7.65 0.00 42.34 4.35
92 93 3.118884 GCAACATCTTGAAATGGATGGCT 60.119 43.478 7.65 0.00 42.34 4.75
93 94 3.192466 GCAACATCTTGAAATGGATGGC 58.808 45.455 7.65 0.00 42.34 4.40
94 95 4.459390 TGCAACATCTTGAAATGGATGG 57.541 40.909 7.65 0.00 42.34 3.51
95 96 4.325204 CGTTGCAACATCTTGAAATGGATG 59.675 41.667 28.01 3.19 43.30 3.51
96 97 4.487948 CGTTGCAACATCTTGAAATGGAT 58.512 39.130 28.01 0.00 30.56 3.41
97 98 3.899734 CGTTGCAACATCTTGAAATGGA 58.100 40.909 28.01 0.00 30.56 3.41
98 99 2.988493 CCGTTGCAACATCTTGAAATGG 59.012 45.455 28.01 13.45 43.16 3.16
99 100 2.409378 GCCGTTGCAACATCTTGAAATG 59.591 45.455 28.01 8.41 37.47 2.32
100 101 2.676076 GCCGTTGCAACATCTTGAAAT 58.324 42.857 28.01 0.00 37.47 2.17
101 102 1.599171 CGCCGTTGCAACATCTTGAAA 60.599 47.619 28.01 0.00 37.32 2.69
102 103 0.040514 CGCCGTTGCAACATCTTGAA 60.041 50.000 28.01 0.00 37.32 2.69
103 104 1.573932 CGCCGTTGCAACATCTTGA 59.426 52.632 28.01 0.00 37.32 3.02
104 105 1.442520 CCGCCGTTGCAACATCTTG 60.443 57.895 28.01 11.92 37.32 3.02
105 106 1.169661 TTCCGCCGTTGCAACATCTT 61.170 50.000 28.01 0.00 37.32 2.40
106 107 1.577328 CTTCCGCCGTTGCAACATCT 61.577 55.000 28.01 0.00 37.32 2.90
107 108 1.154225 CTTCCGCCGTTGCAACATC 60.154 57.895 28.01 17.31 37.32 3.06
108 109 2.625823 CCTTCCGCCGTTGCAACAT 61.626 57.895 28.01 0.00 37.32 2.71
109 110 3.283684 CCTTCCGCCGTTGCAACA 61.284 61.111 28.01 6.42 37.32 3.33
110 111 2.332654 ATCCTTCCGCCGTTGCAAC 61.333 57.895 19.89 19.89 37.32 4.17
111 112 2.033448 ATCCTTCCGCCGTTGCAA 59.967 55.556 0.00 0.00 37.32 4.08
112 113 2.745884 CATCCTTCCGCCGTTGCA 60.746 61.111 0.00 0.00 37.32 4.08
113 114 2.435938 TCATCCTTCCGCCGTTGC 60.436 61.111 0.00 0.00 0.00 4.17
114 115 0.673644 AACTCATCCTTCCGCCGTTG 60.674 55.000 0.00 0.00 0.00 4.10
115 116 0.673644 CAACTCATCCTTCCGCCGTT 60.674 55.000 0.00 0.00 0.00 4.44
116 117 1.079127 CAACTCATCCTTCCGCCGT 60.079 57.895 0.00 0.00 0.00 5.68
117 118 1.815421 CCAACTCATCCTTCCGCCG 60.815 63.158 0.00 0.00 0.00 6.46
118 119 0.462759 CTCCAACTCATCCTTCCGCC 60.463 60.000 0.00 0.00 0.00 6.13
119 120 0.537188 TCTCCAACTCATCCTTCCGC 59.463 55.000 0.00 0.00 0.00 5.54
120 121 1.137872 CCTCTCCAACTCATCCTTCCG 59.862 57.143 0.00 0.00 0.00 4.30
121 122 1.488393 CCCTCTCCAACTCATCCTTCC 59.512 57.143 0.00 0.00 0.00 3.46
122 123 1.134250 GCCCTCTCCAACTCATCCTTC 60.134 57.143 0.00 0.00 0.00 3.46
123 124 0.915364 GCCCTCTCCAACTCATCCTT 59.085 55.000 0.00 0.00 0.00 3.36
124 125 1.333636 CGCCCTCTCCAACTCATCCT 61.334 60.000 0.00 0.00 0.00 3.24
125 126 1.144936 CGCCCTCTCCAACTCATCC 59.855 63.158 0.00 0.00 0.00 3.51
126 127 1.144936 CCGCCCTCTCCAACTCATC 59.855 63.158 0.00 0.00 0.00 2.92
127 128 1.306141 TCCGCCCTCTCCAACTCAT 60.306 57.895 0.00 0.00 0.00 2.90
128 129 2.119611 TCCGCCCTCTCCAACTCA 59.880 61.111 0.00 0.00 0.00 3.41
129 130 2.579738 GTCCGCCCTCTCCAACTC 59.420 66.667 0.00 0.00 0.00 3.01
130 131 3.382832 CGTCCGCCCTCTCCAACT 61.383 66.667 0.00 0.00 0.00 3.16
147 148 4.821589 CCTGTCCTTCTCCGCCGC 62.822 72.222 0.00 0.00 0.00 6.53
148 149 4.148825 CCCTGTCCTTCTCCGCCG 62.149 72.222 0.00 0.00 0.00 6.46
149 150 3.787001 CCCCTGTCCTTCTCCGCC 61.787 72.222 0.00 0.00 0.00 6.13
150 151 3.003763 ACCCCTGTCCTTCTCCGC 61.004 66.667 0.00 0.00 0.00 5.54
151 152 1.608717 CTGACCCCTGTCCTTCTCCG 61.609 65.000 0.00 0.00 41.01 4.63
152 153 1.904990 GCTGACCCCTGTCCTTCTCC 61.905 65.000 0.00 0.00 41.01 3.71
153 154 1.599576 GCTGACCCCTGTCCTTCTC 59.400 63.158 0.00 0.00 41.01 2.87
154 155 1.920835 GGCTGACCCCTGTCCTTCT 60.921 63.158 0.00 0.00 41.01 2.85
155 156 2.671682 GGCTGACCCCTGTCCTTC 59.328 66.667 0.00 0.00 41.01 3.46
156 157 3.322466 CGGCTGACCCCTGTCCTT 61.322 66.667 0.00 0.00 41.01 3.36
157 158 4.316823 TCGGCTGACCCCTGTCCT 62.317 66.667 0.00 0.00 41.01 3.85
158 159 3.775654 CTCGGCTGACCCCTGTCC 61.776 72.222 0.00 0.00 41.01 4.02
159 160 2.680352 TCTCGGCTGACCCCTGTC 60.680 66.667 0.00 0.00 42.12 3.51
160 161 2.997897 GTCTCGGCTGACCCCTGT 60.998 66.667 0.00 0.00 0.00 4.00
161 162 4.135153 CGTCTCGGCTGACCCCTG 62.135 72.222 0.00 0.00 33.70 4.45
172 173 4.883300 GCCGTCGCTACCGTCTCG 62.883 72.222 0.00 0.00 35.54 4.04
173 174 3.736482 CTGCCGTCGCTACCGTCTC 62.736 68.421 0.00 0.00 35.36 3.36
174 175 3.812019 CTGCCGTCGCTACCGTCT 61.812 66.667 0.00 0.00 35.36 4.18
175 176 2.609183 AATCTGCCGTCGCTACCGTC 62.609 60.000 0.00 0.00 35.36 4.79
176 177 1.378882 TAATCTGCCGTCGCTACCGT 61.379 55.000 0.00 0.00 35.36 4.83
177 178 0.248743 TTAATCTGCCGTCGCTACCG 60.249 55.000 0.00 0.00 35.36 4.02
178 179 1.488527 CTTAATCTGCCGTCGCTACC 58.511 55.000 0.00 0.00 35.36 3.18
179 180 0.853419 GCTTAATCTGCCGTCGCTAC 59.147 55.000 0.00 0.00 35.36 3.58
180 181 0.594028 CGCTTAATCTGCCGTCGCTA 60.594 55.000 0.00 0.00 35.36 4.26
181 182 1.878522 CGCTTAATCTGCCGTCGCT 60.879 57.895 0.00 0.00 35.36 4.93
182 183 2.165301 ACGCTTAATCTGCCGTCGC 61.165 57.895 0.00 0.00 0.00 5.19
183 184 1.631072 CACGCTTAATCTGCCGTCG 59.369 57.895 0.00 0.00 0.00 5.12
184 185 0.459585 TCCACGCTTAATCTGCCGTC 60.460 55.000 0.00 0.00 0.00 4.79
185 186 0.460284 CTCCACGCTTAATCTGCCGT 60.460 55.000 0.00 0.00 0.00 5.68
186 187 1.154205 CCTCCACGCTTAATCTGCCG 61.154 60.000 0.00 0.00 0.00 5.69
187 188 1.440145 GCCTCCACGCTTAATCTGCC 61.440 60.000 0.00 0.00 0.00 4.85
188 189 0.462759 AGCCTCCACGCTTAATCTGC 60.463 55.000 0.00 0.00 34.73 4.26
189 190 3.768633 AGCCTCCACGCTTAATCTG 57.231 52.632 0.00 0.00 34.73 2.90
196 197 1.377725 CAATCCAAGCCTCCACGCT 60.378 57.895 0.00 0.00 42.22 5.07
197 198 1.377202 TCAATCCAAGCCTCCACGC 60.377 57.895 0.00 0.00 0.00 5.34
198 199 0.036010 AGTCAATCCAAGCCTCCACG 60.036 55.000 0.00 0.00 0.00 4.94
199 200 1.271597 ACAGTCAATCCAAGCCTCCAC 60.272 52.381 0.00 0.00 0.00 4.02
200 201 1.003580 GACAGTCAATCCAAGCCTCCA 59.996 52.381 0.00 0.00 0.00 3.86
201 202 1.280421 AGACAGTCAATCCAAGCCTCC 59.720 52.381 2.66 0.00 0.00 4.30
202 203 2.027745 TCAGACAGTCAATCCAAGCCTC 60.028 50.000 2.66 0.00 0.00 4.70
203 204 1.980765 TCAGACAGTCAATCCAAGCCT 59.019 47.619 2.66 0.00 0.00 4.58
204 205 2.079925 GTCAGACAGTCAATCCAAGCC 58.920 52.381 2.66 0.00 0.00 4.35
205 206 2.740981 CTGTCAGACAGTCAATCCAAGC 59.259 50.000 21.00 0.00 41.19 4.01
206 207 3.332919 CCTGTCAGACAGTCAATCCAAG 58.667 50.000 25.88 6.56 44.50 3.61
207 208 2.038952 CCCTGTCAGACAGTCAATCCAA 59.961 50.000 25.88 0.00 44.50 3.53
208 209 1.625315 CCCTGTCAGACAGTCAATCCA 59.375 52.381 25.88 0.00 44.50 3.41
209 210 1.677217 GCCCTGTCAGACAGTCAATCC 60.677 57.143 25.88 6.69 44.50 3.01
210 211 1.002430 TGCCCTGTCAGACAGTCAATC 59.998 52.381 25.88 12.06 44.50 2.67
211 212 1.002888 CTGCCCTGTCAGACAGTCAAT 59.997 52.381 25.88 0.00 44.50 2.57
212 213 0.394192 CTGCCCTGTCAGACAGTCAA 59.606 55.000 25.88 11.74 44.50 3.18
213 214 0.469892 TCTGCCCTGTCAGACAGTCA 60.470 55.000 25.88 21.00 44.50 3.41
214 215 2.355946 TCTGCCCTGTCAGACAGTC 58.644 57.895 25.88 18.08 44.50 3.51
215 216 4.627394 TCTGCCCTGTCAGACAGT 57.373 55.556 25.88 0.00 44.50 3.55
226 227 2.237392 AGAATACAAGTCAGGTCTGCCC 59.763 50.000 0.00 0.00 34.57 5.36
227 228 3.618690 AGAATACAAGTCAGGTCTGCC 57.381 47.619 0.00 0.00 0.00 4.85
228 229 4.092091 CGAAAGAATACAAGTCAGGTCTGC 59.908 45.833 0.00 0.00 0.00 4.26
229 230 5.119279 CACGAAAGAATACAAGTCAGGTCTG 59.881 44.000 0.00 0.00 0.00 3.51
230 231 5.230942 CACGAAAGAATACAAGTCAGGTCT 58.769 41.667 0.00 0.00 0.00 3.85
231 232 4.389077 CCACGAAAGAATACAAGTCAGGTC 59.611 45.833 0.00 0.00 0.00 3.85
232 233 4.315803 CCACGAAAGAATACAAGTCAGGT 58.684 43.478 0.00 0.00 0.00 4.00
233 234 3.125316 GCCACGAAAGAATACAAGTCAGG 59.875 47.826 0.00 0.00 0.00 3.86
234 235 3.125316 GGCCACGAAAGAATACAAGTCAG 59.875 47.826 0.00 0.00 0.00 3.51
235 236 3.071479 GGCCACGAAAGAATACAAGTCA 58.929 45.455 0.00 0.00 0.00 3.41
236 237 2.093783 CGGCCACGAAAGAATACAAGTC 59.906 50.000 2.24 0.00 44.60 3.01
237 238 2.073816 CGGCCACGAAAGAATACAAGT 58.926 47.619 2.24 0.00 44.60 3.16
238 239 2.806288 CGGCCACGAAAGAATACAAG 57.194 50.000 2.24 0.00 44.60 3.16
250 251 0.589223 TTTTTACTTGCTCGGCCACG 59.411 50.000 2.24 0.00 42.74 4.94
251 252 1.607148 AGTTTTTACTTGCTCGGCCAC 59.393 47.619 2.24 0.00 0.00 5.01
252 253 1.975660 AGTTTTTACTTGCTCGGCCA 58.024 45.000 2.24 0.00 0.00 5.36
253 254 3.501062 ACTTAGTTTTTACTTGCTCGGCC 59.499 43.478 0.00 0.00 0.00 6.13
254 255 4.744136 ACTTAGTTTTTACTTGCTCGGC 57.256 40.909 0.00 0.00 0.00 5.54
255 256 8.699283 AGTATACTTAGTTTTTACTTGCTCGG 57.301 34.615 0.00 0.00 0.00 4.63
256 257 9.953825 CAAGTATACTTAGTTTTTACTTGCTCG 57.046 33.333 17.62 0.00 41.35 5.03
272 273 9.350951 ACAACTAAGAAAAAGGCAAGTATACTT 57.649 29.630 12.50 12.50 36.45 2.24
273 274 8.784043 CACAACTAAGAAAAAGGCAAGTATACT 58.216 33.333 0.00 0.00 0.00 2.12
274 275 8.780249 TCACAACTAAGAAAAAGGCAAGTATAC 58.220 33.333 0.00 0.00 0.00 1.47
275 276 8.911918 TCACAACTAAGAAAAAGGCAAGTATA 57.088 30.769 0.00 0.00 0.00 1.47
276 277 7.817418 TCACAACTAAGAAAAAGGCAAGTAT 57.183 32.000 0.00 0.00 0.00 2.12
277 278 7.500892 TGATCACAACTAAGAAAAAGGCAAGTA 59.499 33.333 0.00 0.00 0.00 2.24
278 279 6.321181 TGATCACAACTAAGAAAAAGGCAAGT 59.679 34.615 0.00 0.00 0.00 3.16
279 280 6.738114 TGATCACAACTAAGAAAAAGGCAAG 58.262 36.000 0.00 0.00 0.00 4.01
280 281 6.545666 TCTGATCACAACTAAGAAAAAGGCAA 59.454 34.615 0.00 0.00 0.00 4.52
281 282 6.017109 GTCTGATCACAACTAAGAAAAAGGCA 60.017 38.462 0.00 0.00 0.00 4.75
282 283 6.374578 GTCTGATCACAACTAAGAAAAAGGC 58.625 40.000 0.00 0.00 0.00 4.35
283 284 6.423905 TCGTCTGATCACAACTAAGAAAAAGG 59.576 38.462 0.00 0.00 0.00 3.11
284 285 7.408132 TCGTCTGATCACAACTAAGAAAAAG 57.592 36.000 0.00 0.00 0.00 2.27
285 286 7.655732 TCATCGTCTGATCACAACTAAGAAAAA 59.344 33.333 0.00 0.00 30.49 1.94
286 287 7.151976 TCATCGTCTGATCACAACTAAGAAAA 58.848 34.615 0.00 0.00 30.49 2.29
287 288 6.687604 TCATCGTCTGATCACAACTAAGAAA 58.312 36.000 0.00 0.00 30.49 2.52
288 289 6.267496 TCATCGTCTGATCACAACTAAGAA 57.733 37.500 0.00 0.00 30.49 2.52
289 290 5.897377 TCATCGTCTGATCACAACTAAGA 57.103 39.130 0.00 0.00 30.49 2.10
290 291 6.020041 CACATCATCGTCTGATCACAACTAAG 60.020 42.308 0.00 0.00 42.91 2.18
291 292 5.807011 CACATCATCGTCTGATCACAACTAA 59.193 40.000 0.00 0.00 42.91 2.24
292 293 5.125417 TCACATCATCGTCTGATCACAACTA 59.875 40.000 0.00 0.00 42.91 2.24
293 294 4.082026 TCACATCATCGTCTGATCACAACT 60.082 41.667 0.00 0.00 42.91 3.16
294 295 4.176271 TCACATCATCGTCTGATCACAAC 58.824 43.478 0.00 0.00 42.91 3.32
295 296 4.454728 TCACATCATCGTCTGATCACAA 57.545 40.909 0.00 0.00 42.91 3.33
296 297 4.500375 GGATCACATCATCGTCTGATCACA 60.500 45.833 8.37 0.00 42.91 3.58
297 298 3.986572 GGATCACATCATCGTCTGATCAC 59.013 47.826 8.37 0.00 42.91 3.06
298 299 3.304928 CGGATCACATCATCGTCTGATCA 60.305 47.826 8.37 0.00 42.91 2.92
299 300 3.240884 CGGATCACATCATCGTCTGATC 58.759 50.000 0.00 0.00 42.91 2.92
300 301 2.029560 CCGGATCACATCATCGTCTGAT 60.030 50.000 0.00 0.00 45.78 2.90
301 302 1.338020 CCGGATCACATCATCGTCTGA 59.662 52.381 0.00 0.00 38.53 3.27
302 303 1.067669 ACCGGATCACATCATCGTCTG 59.932 52.381 9.46 0.00 0.00 3.51
303 304 1.067669 CACCGGATCACATCATCGTCT 59.932 52.381 9.46 0.00 0.00 4.18
304 305 1.491670 CACCGGATCACATCATCGTC 58.508 55.000 9.46 0.00 0.00 4.20
305 306 0.530650 GCACCGGATCACATCATCGT 60.531 55.000 9.46 0.00 0.00 3.73
306 307 0.249615 AGCACCGGATCACATCATCG 60.250 55.000 9.46 0.00 0.00 3.84
307 308 1.224075 CAGCACCGGATCACATCATC 58.776 55.000 9.46 0.00 0.00 2.92
308 309 0.816825 GCAGCACCGGATCACATCAT 60.817 55.000 9.46 0.00 0.00 2.45
309 310 1.450134 GCAGCACCGGATCACATCA 60.450 57.895 9.46 0.00 0.00 3.07
310 311 0.104855 TAGCAGCACCGGATCACATC 59.895 55.000 9.46 0.00 0.00 3.06
311 312 0.761187 ATAGCAGCACCGGATCACAT 59.239 50.000 9.46 0.00 0.00 3.21
312 313 0.179076 CATAGCAGCACCGGATCACA 60.179 55.000 9.46 0.00 0.00 3.58
313 314 0.104855 TCATAGCAGCACCGGATCAC 59.895 55.000 9.46 0.00 0.00 3.06
314 315 0.390492 CTCATAGCAGCACCGGATCA 59.610 55.000 9.46 0.00 0.00 2.92
315 316 0.676184 TCTCATAGCAGCACCGGATC 59.324 55.000 9.46 0.00 0.00 3.36
316 317 1.274728 GATCTCATAGCAGCACCGGAT 59.725 52.381 9.46 0.00 0.00 4.18
317 318 0.676184 GATCTCATAGCAGCACCGGA 59.324 55.000 9.46 0.00 0.00 5.14
318 319 0.320247 GGATCTCATAGCAGCACCGG 60.320 60.000 0.00 0.00 0.00 5.28
319 320 0.665670 CGGATCTCATAGCAGCACCG 60.666 60.000 0.00 0.00 0.00 4.94
320 321 0.676184 TCGGATCTCATAGCAGCACC 59.324 55.000 0.00 0.00 0.00 5.01
321 322 1.777101 GTCGGATCTCATAGCAGCAC 58.223 55.000 0.00 0.00 0.00 4.40
322 323 0.312102 CGTCGGATCTCATAGCAGCA 59.688 55.000 0.00 0.00 0.00 4.41
323 324 1.006314 GCGTCGGATCTCATAGCAGC 61.006 60.000 0.00 0.00 0.00 5.25
324 325 0.727457 CGCGTCGGATCTCATAGCAG 60.727 60.000 0.00 0.00 0.00 4.24
325 326 1.282875 CGCGTCGGATCTCATAGCA 59.717 57.895 0.00 0.00 0.00 3.49
326 327 2.083522 GCGCGTCGGATCTCATAGC 61.084 63.158 8.43 0.00 0.00 2.97
327 328 0.999228 GTGCGCGTCGGATCTCATAG 60.999 60.000 8.43 0.00 0.00 2.23
328 329 1.008881 GTGCGCGTCGGATCTCATA 60.009 57.895 8.43 0.00 0.00 2.15
329 330 2.278857 GTGCGCGTCGGATCTCAT 60.279 61.111 8.43 0.00 0.00 2.90
330 331 2.486636 AAAGTGCGCGTCGGATCTCA 62.487 55.000 8.43 0.00 0.00 3.27
331 332 1.743855 GAAAGTGCGCGTCGGATCTC 61.744 60.000 8.43 0.00 0.00 2.75
332 333 1.805945 GAAAGTGCGCGTCGGATCT 60.806 57.895 8.43 0.00 0.00 2.75
333 334 1.743855 GAGAAAGTGCGCGTCGGATC 61.744 60.000 8.43 1.31 0.00 3.36
334 335 1.805945 GAGAAAGTGCGCGTCGGAT 60.806 57.895 8.43 0.00 0.00 4.18
335 336 2.430244 GAGAAAGTGCGCGTCGGA 60.430 61.111 8.43 0.00 0.00 4.55
336 337 2.720758 CTGAGAAAGTGCGCGTCGG 61.721 63.158 8.43 0.00 0.00 4.79
337 338 1.729484 TCTGAGAAAGTGCGCGTCG 60.729 57.895 8.43 0.00 0.00 5.12
338 339 0.939577 TGTCTGAGAAAGTGCGCGTC 60.940 55.000 8.43 0.00 0.00 5.19
339 340 0.529773 TTGTCTGAGAAAGTGCGCGT 60.530 50.000 8.43 0.00 0.00 6.01
340 341 0.581529 TTTGTCTGAGAAAGTGCGCG 59.418 50.000 0.00 0.00 0.00 6.86
341 342 2.977405 ATTTGTCTGAGAAAGTGCGC 57.023 45.000 0.00 0.00 0.00 6.09
342 343 7.858052 ATTTAAATTTGTCTGAGAAAGTGCG 57.142 32.000 6.16 0.00 0.00 5.34
371 372 9.651913 CCCATACAAGCACAAGTAAATTAAATT 57.348 29.630 0.00 0.00 0.00 1.82
372 373 8.257306 CCCCATACAAGCACAAGTAAATTAAAT 58.743 33.333 0.00 0.00 0.00 1.40
373 374 7.451877 TCCCCATACAAGCACAAGTAAATTAAA 59.548 33.333 0.00 0.00 0.00 1.52
374 375 6.948886 TCCCCATACAAGCACAAGTAAATTAA 59.051 34.615 0.00 0.00 0.00 1.40
375 376 6.486056 TCCCCATACAAGCACAAGTAAATTA 58.514 36.000 0.00 0.00 0.00 1.40
376 377 5.329399 TCCCCATACAAGCACAAGTAAATT 58.671 37.500 0.00 0.00 0.00 1.82
377 378 4.929479 TCCCCATACAAGCACAAGTAAAT 58.071 39.130 0.00 0.00 0.00 1.40
378 379 4.374689 TCCCCATACAAGCACAAGTAAA 57.625 40.909 0.00 0.00 0.00 2.01
379 380 4.584638 ATCCCCATACAAGCACAAGTAA 57.415 40.909 0.00 0.00 0.00 2.24
380 381 4.444306 GCTATCCCCATACAAGCACAAGTA 60.444 45.833 0.00 0.00 33.38 2.24
381 382 3.685550 GCTATCCCCATACAAGCACAAGT 60.686 47.826 0.00 0.00 33.38 3.16
382 383 2.880890 GCTATCCCCATACAAGCACAAG 59.119 50.000 0.00 0.00 33.38 3.16
383 384 2.240921 TGCTATCCCCATACAAGCACAA 59.759 45.455 0.00 0.00 38.22 3.33
384 385 1.843206 TGCTATCCCCATACAAGCACA 59.157 47.619 0.00 0.00 38.22 4.57
385 386 2.638480 TGCTATCCCCATACAAGCAC 57.362 50.000 0.00 0.00 38.22 4.40
386 387 3.489355 CAATGCTATCCCCATACAAGCA 58.511 45.455 0.00 0.00 46.30 3.91
387 388 2.821969 CCAATGCTATCCCCATACAAGC 59.178 50.000 0.00 0.00 0.00 4.01
388 389 4.371624 TCCAATGCTATCCCCATACAAG 57.628 45.455 0.00 0.00 0.00 3.16
389 390 4.508943 CCATCCAATGCTATCCCCATACAA 60.509 45.833 0.00 0.00 0.00 2.41
390 391 3.010472 CCATCCAATGCTATCCCCATACA 59.990 47.826 0.00 0.00 0.00 2.29
391 392 3.624777 CCATCCAATGCTATCCCCATAC 58.375 50.000 0.00 0.00 0.00 2.39
392 393 2.025037 GCCATCCAATGCTATCCCCATA 60.025 50.000 0.00 0.00 0.00 2.74
393 394 1.272872 GCCATCCAATGCTATCCCCAT 60.273 52.381 0.00 0.00 0.00 4.00
394 395 0.112995 GCCATCCAATGCTATCCCCA 59.887 55.000 0.00 0.00 0.00 4.96
395 396 0.613012 GGCCATCCAATGCTATCCCC 60.613 60.000 0.00 0.00 0.00 4.81
396 397 0.407139 AGGCCATCCAATGCTATCCC 59.593 55.000 5.01 0.00 33.74 3.85
397 398 1.542492 CAGGCCATCCAATGCTATCC 58.458 55.000 5.01 0.00 33.74 2.59
398 399 0.886563 GCAGGCCATCCAATGCTATC 59.113 55.000 5.01 0.00 32.50 2.08
399 400 0.892358 CGCAGGCCATCCAATGCTAT 60.892 55.000 5.01 0.00 32.92 2.97
400 401 1.526686 CGCAGGCCATCCAATGCTA 60.527 57.895 5.01 0.00 32.92 3.49
401 402 2.831742 CGCAGGCCATCCAATGCT 60.832 61.111 5.01 0.00 32.92 3.79
402 403 3.908081 CCGCAGGCCATCCAATGC 61.908 66.667 5.01 3.44 46.14 3.56
414 415 3.853330 CGGACACGAATGCCGCAG 61.853 66.667 0.00 0.00 44.60 5.18
419 420 3.849953 GTCCGCGGACACGAATGC 61.850 66.667 44.88 21.66 44.02 3.56
449 450 0.758123 AACATTGCCCCACAAACTGG 59.242 50.000 0.00 0.00 42.86 4.00
450 451 1.411977 TCAACATTGCCCCACAAACTG 59.588 47.619 0.00 0.00 42.86 3.16
451 452 1.786937 TCAACATTGCCCCACAAACT 58.213 45.000 0.00 0.00 42.86 2.66
452 453 2.158971 ACTTCAACATTGCCCCACAAAC 60.159 45.455 0.00 0.00 42.86 2.93
453 454 2.102252 GACTTCAACATTGCCCCACAAA 59.898 45.455 0.00 0.00 42.86 2.83
454 455 1.686052 GACTTCAACATTGCCCCACAA 59.314 47.619 0.00 0.00 44.01 3.33
455 456 1.133513 AGACTTCAACATTGCCCCACA 60.134 47.619 0.00 0.00 0.00 4.17
456 457 1.620822 AGACTTCAACATTGCCCCAC 58.379 50.000 0.00 0.00 0.00 4.61
457 458 1.962807 CAAGACTTCAACATTGCCCCA 59.037 47.619 0.00 0.00 0.00 4.96
458 459 2.238521 TCAAGACTTCAACATTGCCCC 58.761 47.619 0.00 0.00 0.00 5.80
459 460 3.569701 TCTTCAAGACTTCAACATTGCCC 59.430 43.478 0.00 0.00 0.00 5.36
460 461 4.540824 GTCTTCAAGACTTCAACATTGCC 58.459 43.478 10.55 0.00 41.88 4.52
461 462 4.214437 CGTCTTCAAGACTTCAACATTGC 58.786 43.478 15.66 0.00 42.92 3.56
462 463 4.273480 ACCGTCTTCAAGACTTCAACATTG 59.727 41.667 15.66 0.00 42.92 2.82
463 464 4.451900 ACCGTCTTCAAGACTTCAACATT 58.548 39.130 15.66 0.00 42.92 2.71
464 465 4.073293 ACCGTCTTCAAGACTTCAACAT 57.927 40.909 15.66 0.00 42.92 2.71
465 466 3.536956 ACCGTCTTCAAGACTTCAACA 57.463 42.857 15.66 0.00 42.92 3.33
466 467 4.571176 AGAAACCGTCTTCAAGACTTCAAC 59.429 41.667 15.66 4.72 42.92 3.18
467 468 4.570772 CAGAAACCGTCTTCAAGACTTCAA 59.429 41.667 15.66 0.00 42.92 2.69
468 469 4.119862 CAGAAACCGTCTTCAAGACTTCA 58.880 43.478 15.66 0.00 42.92 3.02
469 470 3.059529 GCAGAAACCGTCTTCAAGACTTC 60.060 47.826 15.66 12.01 42.92 3.01
470 471 2.872858 GCAGAAACCGTCTTCAAGACTT 59.127 45.455 15.66 3.15 42.92 3.01
471 472 2.103263 AGCAGAAACCGTCTTCAAGACT 59.897 45.455 15.66 0.00 42.92 3.24
472 473 2.476997 GAGCAGAAACCGTCTTCAAGAC 59.523 50.000 7.56 7.56 41.71 3.01
473 474 2.548067 GGAGCAGAAACCGTCTTCAAGA 60.548 50.000 0.00 0.00 32.70 3.02
474 475 1.801178 GGAGCAGAAACCGTCTTCAAG 59.199 52.381 0.00 0.00 32.70 3.02
475 476 1.872237 CGGAGCAGAAACCGTCTTCAA 60.872 52.381 0.00 0.00 43.53 2.69
476 477 0.319555 CGGAGCAGAAACCGTCTTCA 60.320 55.000 0.00 0.00 43.53 3.02
477 478 1.014564 CCGGAGCAGAAACCGTCTTC 61.015 60.000 0.00 0.00 46.53 2.87
478 479 1.004918 CCGGAGCAGAAACCGTCTT 60.005 57.895 0.00 0.00 46.53 3.01
479 480 2.207924 ACCGGAGCAGAAACCGTCT 61.208 57.895 9.46 0.00 46.53 4.18
480 481 2.027625 CACCGGAGCAGAAACCGTC 61.028 63.158 9.46 0.00 46.53 4.79
481 482 2.030562 CACCGGAGCAGAAACCGT 59.969 61.111 9.46 0.00 46.53 4.83
537 543 2.254546 TTTGACACATCTCAGCCGTT 57.745 45.000 0.00 0.00 0.00 4.44
580 586 2.027929 TCCTCCGGCATAAAAAGACGAA 60.028 45.455 0.00 0.00 40.78 3.85
1030 1037 2.261671 GACCACATCTCCGTGCGT 59.738 61.111 0.00 0.00 35.47 5.24
1179 1186 2.710724 GGTTTGCCACGACGGAGTCT 62.711 60.000 0.00 0.00 45.08 3.24
1256 1263 1.762708 CATTACCACATCCACCACCC 58.237 55.000 0.00 0.00 0.00 4.61
1923 1938 8.445493 CAGGAAAGGAAATATTTGTGCAATTTC 58.555 33.333 5.17 10.91 38.37 2.17
2210 2566 5.126061 CACCTTCCTCATTGACCTAAAATGG 59.874 44.000 0.00 0.00 36.01 3.16
2773 3743 9.851686 AACATCAGATAATTGCCATTTACTAGA 57.148 29.630 0.00 0.00 0.00 2.43
2776 3746 8.752187 ACAAACATCAGATAATTGCCATTTACT 58.248 29.630 7.09 0.00 0.00 2.24
2777 3747 8.810427 CACAAACATCAGATAATTGCCATTTAC 58.190 33.333 7.09 0.00 0.00 2.01
2778 3748 7.492020 GCACAAACATCAGATAATTGCCATTTA 59.508 33.333 7.09 0.00 0.00 1.40
2780 3750 5.813672 GCACAAACATCAGATAATTGCCATT 59.186 36.000 7.09 0.00 0.00 3.16
2781 3751 5.105269 TGCACAAACATCAGATAATTGCCAT 60.105 36.000 7.09 0.00 0.00 4.40
2782 3752 4.220163 TGCACAAACATCAGATAATTGCCA 59.780 37.500 7.09 3.62 0.00 4.92
2783 3753 4.746729 TGCACAAACATCAGATAATTGCC 58.253 39.130 7.09 1.70 0.00 4.52
2784 3754 6.897259 AATGCACAAACATCAGATAATTGC 57.103 33.333 0.00 0.00 0.00 3.56
2785 3755 9.577110 AAGTAATGCACAAACATCAGATAATTG 57.423 29.630 0.00 6.01 0.00 2.32
2788 3758 8.397906 GCTAAGTAATGCACAAACATCAGATAA 58.602 33.333 0.00 0.00 0.00 1.75
2789 3759 7.770433 AGCTAAGTAATGCACAAACATCAGATA 59.230 33.333 0.00 0.00 0.00 1.98
2792 3762 6.025896 CAGCTAAGTAATGCACAAACATCAG 58.974 40.000 0.00 0.00 0.00 2.90
2793 3763 5.473162 ACAGCTAAGTAATGCACAAACATCA 59.527 36.000 0.00 0.00 0.00 3.07
2794 3764 5.942872 ACAGCTAAGTAATGCACAAACATC 58.057 37.500 0.00 0.00 0.00 3.06
2795 3765 5.964958 ACAGCTAAGTAATGCACAAACAT 57.035 34.783 0.00 0.00 0.00 2.71
3270 4252 0.885596 GCATGCTCTGCCCTGATCTC 60.886 60.000 11.37 0.00 45.66 2.75
3298 4280 0.035458 GATGGGACCCATAGCCTTCG 59.965 60.000 26.61 0.00 45.26 3.79
3336 4319 5.670792 ACGATGATAAGTTCCACTACCAA 57.329 39.130 0.00 0.00 0.00 3.67
3531 4514 5.452496 GCATATCTGACCTGCTTCTAGACAA 60.452 44.000 0.00 0.00 33.15 3.18
3550 4533 8.455903 AATATAGACACTGCAACAAAGCATAT 57.544 30.769 0.00 0.00 44.68 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.