Multiple sequence alignment - TraesCS2B01G138100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G138100 chr2B 100.000 2900 0 0 1 2900 105372533 105375432 0.000000e+00 5356.0
1 TraesCS2B01G138100 chr2B 83.563 2032 267 39 1 2013 104894296 104896279 0.000000e+00 1840.0
2 TraesCS2B01G138100 chr2B 88.043 276 29 2 2618 2892 777648983 777648711 1.000000e-84 324.0
3 TraesCS2B01G138100 chr2D 94.209 2435 106 19 1 2426 65719010 65716602 0.000000e+00 3683.0
4 TraesCS2B01G138100 chr2D 83.467 1990 276 33 3 1968 66462792 66460832 0.000000e+00 1803.0
5 TraesCS2B01G138100 chr2D 78.877 374 50 21 461 816 66119266 66118904 2.910000e-55 226.0
6 TraesCS2B01G138100 chr2A 91.438 2441 153 27 11 2426 68811443 68813852 0.000000e+00 3299.0
7 TraesCS2B01G138100 chr2A 82.947 1982 279 28 3 1959 68503875 68505822 0.000000e+00 1733.0
8 TraesCS2B01G138100 chr2A 85.327 443 50 11 2458 2892 748898705 748899140 7.370000e-121 444.0
9 TraesCS2B01G138100 chr6D 95.082 61 3 0 2820 2880 51460387 51460447 2.380000e-16 97.1
10 TraesCS2B01G138100 chr5A 86.957 69 8 1 2754 2821 555055937 555056005 3.100000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G138100 chr2B 105372533 105375432 2899 False 5356 5356 100.000 1 2900 1 chr2B.!!$F2 2899
1 TraesCS2B01G138100 chr2B 104894296 104896279 1983 False 1840 1840 83.563 1 2013 1 chr2B.!!$F1 2012
2 TraesCS2B01G138100 chr2D 65716602 65719010 2408 True 3683 3683 94.209 1 2426 1 chr2D.!!$R1 2425
3 TraesCS2B01G138100 chr2D 66460832 66462792 1960 True 1803 1803 83.467 3 1968 1 chr2D.!!$R3 1965
4 TraesCS2B01G138100 chr2A 68811443 68813852 2409 False 3299 3299 91.438 11 2426 1 chr2A.!!$F2 2415
5 TraesCS2B01G138100 chr2A 68503875 68505822 1947 False 1733 1733 82.947 3 1959 1 chr2A.!!$F1 1956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 571 0.821711 ATGTCCAAACACCCACACGG 60.822 55.0 0.0 0.0 38.48 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 2573 0.03601 AATTGTGCTCCTCTGGACCG 60.036 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 5.411361 AGTTATGAGTAGCGCAAAATGACAA 59.589 36.000 11.47 0.00 0.00 3.18
60 61 8.240682 AGCGCAAAATGACAACTATATTTGTTA 58.759 29.630 11.47 6.43 39.88 2.41
120 121 5.682862 CCAACAATATGAACAAATAGCGAGC 59.317 40.000 0.00 0.00 0.00 5.03
126 127 1.398390 GAACAAATAGCGAGCACAGGG 59.602 52.381 0.00 0.00 0.00 4.45
204 206 2.037511 CACCCGGACTACCAAGTTTACA 59.962 50.000 0.73 0.00 35.56 2.41
215 217 5.897377 ACCAAGTTTACACAATATGCCTC 57.103 39.130 0.00 0.00 0.00 4.70
249 251 2.533916 ACACTTGAGCTCATCTCTGGA 58.466 47.619 19.04 0.00 42.38 3.86
268 271 3.245016 TGGAGACGTTGAGGGAGTTACTA 60.245 47.826 0.00 0.00 0.00 1.82
283 286 5.354842 AGTTACTATTGAACCTAGCCCAC 57.645 43.478 0.00 0.00 0.00 4.61
564 571 0.821711 ATGTCCAAACACCCACACGG 60.822 55.000 0.00 0.00 38.48 4.94
688 697 3.315470 GGTACACGCAGATCACATCTCTA 59.685 47.826 0.00 0.00 37.58 2.43
722 732 7.821595 CAACAATGCATGATTTGTAGAACAT 57.178 32.000 0.00 0.00 35.09 2.71
756 768 3.752222 CCTCAGCATTCATTCATAGCCTC 59.248 47.826 0.00 0.00 0.00 4.70
875 896 3.334581 TCCAAATCATCCCCCATATCCTG 59.665 47.826 0.00 0.00 0.00 3.86
881 903 5.065613 TCATCCCCCATATCCTGAAAAAG 57.934 43.478 0.00 0.00 0.00 2.27
1258 1281 2.774951 CGCTTCAACTACGTCGCCG 61.775 63.158 0.00 0.00 40.83 6.46
1475 1498 2.652382 TTCTTCGCGCACTTCACCCA 62.652 55.000 8.75 0.00 0.00 4.51
1644 1667 2.100197 CTGTTCGATGACCTCACCCTA 58.900 52.381 0.00 0.00 0.00 3.53
1803 1844 2.746277 GCAAACGAGGACGGGCAT 60.746 61.111 0.00 0.00 44.46 4.40
1824 1865 2.496070 TGAGGAGGACACTAAATCCGTG 59.504 50.000 0.00 0.00 41.52 4.94
1924 1965 6.147821 GGTATCCGAGGTATGACAATGAATTG 59.852 42.308 1.45 1.45 43.26 2.32
2013 2056 2.595463 ATGCGTGCCTGCTGTGTT 60.595 55.556 0.00 0.00 35.36 3.32
2017 2060 2.028043 GTGCCTGCTGTGTTTGCC 59.972 61.111 0.00 0.00 0.00 4.52
2039 2082 5.530915 GCCTGTGCATGGTTCTTATTACATA 59.469 40.000 9.89 0.00 37.47 2.29
2040 2083 6.513393 GCCTGTGCATGGTTCTTATTACATAC 60.513 42.308 9.89 0.00 37.47 2.39
2041 2084 6.767902 CCTGTGCATGGTTCTTATTACATACT 59.232 38.462 0.00 0.00 0.00 2.12
2042 2085 7.254898 CCTGTGCATGGTTCTTATTACATACTG 60.255 40.741 0.00 0.00 0.00 2.74
2043 2086 7.109501 TGTGCATGGTTCTTATTACATACTGT 58.890 34.615 0.00 0.00 0.00 3.55
2063 2106 6.346096 ACTGTATTTATAGGTTGCATGTCGT 58.654 36.000 0.00 0.00 0.00 4.34
2100 2145 0.391597 GTGGTCGGTCCTCAAGAACA 59.608 55.000 0.00 0.00 37.07 3.18
2108 2153 3.209410 GGTCCTCAAGAACATGCCTATG 58.791 50.000 0.00 0.00 40.24 2.23
2153 2198 7.504574 TCATAAATAAGTGTCGTCTCTATGGGA 59.495 37.037 0.00 0.00 0.00 4.37
2154 2199 5.776173 AATAAGTGTCGTCTCTATGGGAG 57.224 43.478 0.00 0.00 43.12 4.30
2191 2236 5.762825 ATGGAGATGTACAATGTCATTGC 57.237 39.130 22.79 10.16 43.98 3.56
2192 2237 3.947196 TGGAGATGTACAATGTCATTGCC 59.053 43.478 22.79 14.90 43.98 4.52
2200 2245 8.651391 ATGTACAATGTCATTGCCAATTATTG 57.349 30.769 22.79 13.23 43.98 1.90
2231 2276 3.003897 TGTTGTTGTTTTATCTGTCGGGC 59.996 43.478 0.00 0.00 0.00 6.13
2255 2300 6.644592 GCAAATGTGTAATGTTTCCTTAAGCA 59.355 34.615 0.00 0.00 0.00 3.91
2257 2302 5.699097 TGTGTAATGTTTCCTTAAGCACC 57.301 39.130 0.00 0.00 0.00 5.01
2262 2307 8.610035 GTGTAATGTTTCCTTAAGCACCTATAC 58.390 37.037 0.00 0.00 0.00 1.47
2266 2311 9.914834 AATGTTTCCTTAAGCACCTATACATAA 57.085 29.630 0.00 0.00 0.00 1.90
2267 2312 9.914834 ATGTTTCCTTAAGCACCTATACATAAA 57.085 29.630 0.00 0.00 0.00 1.40
2268 2313 9.914834 TGTTTCCTTAAGCACCTATACATAAAT 57.085 29.630 0.00 0.00 0.00 1.40
2274 2319 9.950680 CTTAAGCACCTATACATAAATGGTTTG 57.049 33.333 0.00 0.00 0.00 2.93
2276 2321 7.568199 AGCACCTATACATAAATGGTTTGTC 57.432 36.000 0.00 0.00 0.00 3.18
2287 2332 3.559238 ATGGTTTGTCGAACTCAATGC 57.441 42.857 2.95 0.00 38.35 3.56
2291 2336 2.808543 GTTTGTCGAACTCAATGCCTCT 59.191 45.455 0.00 0.00 35.31 3.69
2294 2339 3.476552 TGTCGAACTCAATGCCTCTTTT 58.523 40.909 0.00 0.00 0.00 2.27
2373 2423 4.804608 ACGATGTTCAAAACGTGATTCA 57.195 36.364 0.00 0.00 35.70 2.57
2378 2428 6.462636 CGATGTTCAAAACGTGATTCATACAG 59.537 38.462 0.00 0.00 35.70 2.74
2381 2431 6.481976 TGTTCAAAACGTGATTCATACAGTCT 59.518 34.615 0.00 0.00 35.70 3.24
2414 2465 4.770010 GGTAGTGCTATGAGATAAGGAGCT 59.230 45.833 0.00 0.00 34.19 4.09
2448 2499 9.654663 GTTTATATATTTCTACTAGTGGCTGGG 57.345 37.037 5.39 0.00 0.00 4.45
2449 2500 4.625607 ATATTTCTACTAGTGGCTGGGC 57.374 45.455 5.39 0.00 0.00 5.36
2450 2501 1.651737 TTTCTACTAGTGGCTGGGCA 58.348 50.000 5.39 0.00 0.00 5.36
2451 2502 0.902531 TTCTACTAGTGGCTGGGCAC 59.097 55.000 17.64 17.64 0.00 5.01
2452 2503 1.141881 CTACTAGTGGCTGGGCACG 59.858 63.158 18.85 10.22 0.00 5.34
2453 2504 2.907897 CTACTAGTGGCTGGGCACGC 62.908 65.000 18.85 0.00 0.00 5.34
2472 2523 4.976925 CAGGGCGCGCCTCCTATG 62.977 72.222 45.23 30.60 36.10 2.23
2479 2530 2.815308 CGCCTCCTATGCGTTCCT 59.185 61.111 0.00 0.00 46.59 3.36
2480 2531 1.592669 CGCCTCCTATGCGTTCCTG 60.593 63.158 0.00 0.00 46.59 3.86
2481 2532 1.522569 GCCTCCTATGCGTTCCTGT 59.477 57.895 0.00 0.00 0.00 4.00
2482 2533 0.811616 GCCTCCTATGCGTTCCTGTG 60.812 60.000 0.00 0.00 0.00 3.66
2483 2534 0.811616 CCTCCTATGCGTTCCTGTGC 60.812 60.000 0.00 0.00 0.00 4.57
2484 2535 1.148157 CTCCTATGCGTTCCTGTGCG 61.148 60.000 0.00 0.00 0.00 5.34
2485 2536 1.447838 CCTATGCGTTCCTGTGCGT 60.448 57.895 0.00 0.00 0.00 5.24
2486 2537 0.179121 CCTATGCGTTCCTGTGCGTA 60.179 55.000 0.00 0.00 0.00 4.42
2487 2538 1.538204 CCTATGCGTTCCTGTGCGTAT 60.538 52.381 0.00 0.00 37.25 3.06
2488 2539 1.787155 CTATGCGTTCCTGTGCGTATC 59.213 52.381 0.00 0.00 35.32 2.24
2489 2540 0.108377 ATGCGTTCCTGTGCGTATCA 60.108 50.000 0.00 0.00 0.00 2.15
2490 2541 0.735978 TGCGTTCCTGTGCGTATCAG 60.736 55.000 0.00 0.00 0.00 2.90
2491 2542 0.736325 GCGTTCCTGTGCGTATCAGT 60.736 55.000 3.39 0.00 0.00 3.41
2492 2543 1.269166 CGTTCCTGTGCGTATCAGTC 58.731 55.000 3.39 0.00 0.00 3.51
2493 2544 1.135373 CGTTCCTGTGCGTATCAGTCT 60.135 52.381 3.39 0.00 0.00 3.24
2494 2545 2.096980 CGTTCCTGTGCGTATCAGTCTA 59.903 50.000 3.39 0.00 0.00 2.59
2495 2546 3.696898 GTTCCTGTGCGTATCAGTCTAG 58.303 50.000 3.39 0.00 0.00 2.43
2496 2547 1.676529 TCCTGTGCGTATCAGTCTAGC 59.323 52.381 0.00 0.00 0.00 3.42
2497 2548 1.678627 CCTGTGCGTATCAGTCTAGCT 59.321 52.381 0.00 0.00 0.00 3.32
2498 2549 2.542618 CCTGTGCGTATCAGTCTAGCTG 60.543 54.545 0.00 7.59 46.34 4.24
2516 2567 3.670311 CTGATGTAGCTGTGAATGTGC 57.330 47.619 0.00 0.00 0.00 4.57
2517 2568 3.004862 CTGATGTAGCTGTGAATGTGCA 58.995 45.455 0.00 0.00 0.00 4.57
2518 2569 3.613030 TGATGTAGCTGTGAATGTGCAT 58.387 40.909 0.00 0.00 0.00 3.96
2519 2570 4.768583 TGATGTAGCTGTGAATGTGCATA 58.231 39.130 0.00 0.00 0.00 3.14
2520 2571 5.370679 TGATGTAGCTGTGAATGTGCATAT 58.629 37.500 0.00 0.00 0.00 1.78
2521 2572 5.237779 TGATGTAGCTGTGAATGTGCATATG 59.762 40.000 0.00 0.00 0.00 1.78
2522 2573 3.313249 TGTAGCTGTGAATGTGCATATGC 59.687 43.478 21.09 21.09 42.50 3.14
2523 2574 1.332686 AGCTGTGAATGTGCATATGCG 59.667 47.619 22.21 6.18 45.83 4.73
2524 2575 1.598676 GCTGTGAATGTGCATATGCGG 60.599 52.381 22.21 0.53 45.83 5.69
2525 2576 1.672363 CTGTGAATGTGCATATGCGGT 59.328 47.619 22.21 8.22 45.83 5.68
2526 2577 1.670295 TGTGAATGTGCATATGCGGTC 59.330 47.619 22.21 15.76 45.83 4.79
2527 2578 1.002468 GTGAATGTGCATATGCGGTCC 60.002 52.381 22.21 10.71 45.83 4.46
2528 2579 1.308047 GAATGTGCATATGCGGTCCA 58.692 50.000 22.21 15.58 45.83 4.02
2529 2580 1.265095 GAATGTGCATATGCGGTCCAG 59.735 52.381 22.21 0.00 45.83 3.86
2530 2581 0.469494 ATGTGCATATGCGGTCCAGA 59.531 50.000 22.21 3.77 45.83 3.86
2531 2582 0.179076 TGTGCATATGCGGTCCAGAG 60.179 55.000 22.21 0.00 45.83 3.35
2532 2583 0.882042 GTGCATATGCGGTCCAGAGG 60.882 60.000 22.21 0.00 45.83 3.69
2533 2584 1.048160 TGCATATGCGGTCCAGAGGA 61.048 55.000 22.21 0.00 45.83 3.71
2534 2585 0.320247 GCATATGCGGTCCAGAGGAG 60.320 60.000 12.82 0.00 29.39 3.69
2535 2586 0.320247 CATATGCGGTCCAGAGGAGC 60.320 60.000 5.20 5.20 45.64 4.70
2548 2599 6.786207 GTCCAGAGGAGCACAATTATTAAAC 58.214 40.000 0.00 0.00 29.39 2.01
2549 2600 6.599638 GTCCAGAGGAGCACAATTATTAAACT 59.400 38.462 0.00 0.00 29.39 2.66
2550 2601 7.769044 GTCCAGAGGAGCACAATTATTAAACTA 59.231 37.037 0.00 0.00 29.39 2.24
2551 2602 7.769044 TCCAGAGGAGCACAATTATTAAACTAC 59.231 37.037 0.00 0.00 0.00 2.73
2552 2603 7.254455 CCAGAGGAGCACAATTATTAAACTACG 60.254 40.741 0.00 0.00 0.00 3.51
2553 2604 7.491372 CAGAGGAGCACAATTATTAAACTACGA 59.509 37.037 0.00 0.00 0.00 3.43
2554 2605 8.038944 AGAGGAGCACAATTATTAAACTACGAA 58.961 33.333 0.00 0.00 0.00 3.85
2555 2606 7.971455 AGGAGCACAATTATTAAACTACGAAC 58.029 34.615 0.00 0.00 0.00 3.95
2556 2607 7.604927 AGGAGCACAATTATTAAACTACGAACA 59.395 33.333 0.00 0.00 0.00 3.18
2557 2608 7.691050 GGAGCACAATTATTAAACTACGAACAC 59.309 37.037 0.00 0.00 0.00 3.32
2558 2609 8.090250 AGCACAATTATTAAACTACGAACACA 57.910 30.769 0.00 0.00 0.00 3.72
2559 2610 8.227791 AGCACAATTATTAAACTACGAACACAG 58.772 33.333 0.00 0.00 0.00 3.66
2560 2611 8.013378 GCACAATTATTAAACTACGAACACAGT 58.987 33.333 0.00 0.00 0.00 3.55
2561 2612 9.872757 CACAATTATTAAACTACGAACACAGTT 57.127 29.630 0.00 0.00 36.56 3.16
2566 2617 7.880059 ATTAAACTACGAACACAGTTAGGAC 57.120 36.000 0.00 0.00 33.92 3.85
2567 2618 3.549299 ACTACGAACACAGTTAGGACG 57.451 47.619 0.00 0.00 0.00 4.79
2568 2619 3.141398 ACTACGAACACAGTTAGGACGA 58.859 45.455 0.00 0.00 0.00 4.20
2569 2620 2.412421 ACGAACACAGTTAGGACGAC 57.588 50.000 0.00 0.00 0.00 4.34
2570 2621 1.324718 CGAACACAGTTAGGACGACG 58.675 55.000 0.00 0.00 0.00 5.12
2571 2622 1.069703 CGAACACAGTTAGGACGACGA 60.070 52.381 0.00 0.00 0.00 4.20
2572 2623 2.413765 CGAACACAGTTAGGACGACGAT 60.414 50.000 0.00 0.00 0.00 3.73
2573 2624 2.631418 ACACAGTTAGGACGACGATG 57.369 50.000 0.00 0.00 0.00 3.84
2574 2625 1.269166 CACAGTTAGGACGACGATGC 58.731 55.000 0.00 0.00 0.00 3.91
2575 2626 1.135373 CACAGTTAGGACGACGATGCT 60.135 52.381 0.00 0.00 0.00 3.79
2576 2627 2.096980 CACAGTTAGGACGACGATGCTA 59.903 50.000 0.00 0.00 0.00 3.49
2577 2628 2.751259 ACAGTTAGGACGACGATGCTAA 59.249 45.455 0.00 4.68 30.85 3.09
2578 2629 3.380637 ACAGTTAGGACGACGATGCTAAT 59.619 43.478 0.00 0.00 35.31 1.73
2579 2630 3.731216 CAGTTAGGACGACGATGCTAATG 59.269 47.826 0.00 4.86 35.31 1.90
2580 2631 3.050619 GTTAGGACGACGATGCTAATGG 58.949 50.000 0.00 0.00 35.31 3.16
2581 2632 1.399714 AGGACGACGATGCTAATGGA 58.600 50.000 0.00 0.00 0.00 3.41
2582 2633 1.067212 AGGACGACGATGCTAATGGAC 59.933 52.381 0.00 0.00 0.00 4.02
2583 2634 1.202371 GGACGACGATGCTAATGGACA 60.202 52.381 0.00 0.00 0.00 4.02
2584 2635 2.545952 GGACGACGATGCTAATGGACAT 60.546 50.000 0.00 0.00 0.00 3.06
2585 2636 3.305131 GGACGACGATGCTAATGGACATA 60.305 47.826 0.00 0.00 0.00 2.29
2586 2637 3.639538 ACGACGATGCTAATGGACATAC 58.360 45.455 0.00 0.00 0.00 2.39
2587 2638 2.987149 CGACGATGCTAATGGACATACC 59.013 50.000 0.00 0.00 39.54 2.73
2598 2649 2.486716 TGGACATACCATCCATCACCA 58.513 47.619 0.00 0.00 44.64 4.17
2599 2650 2.439135 TGGACATACCATCCATCACCAG 59.561 50.000 0.00 0.00 44.64 4.00
2600 2651 2.498167 GACATACCATCCATCACCAGC 58.502 52.381 0.00 0.00 0.00 4.85
2601 2652 1.143684 ACATACCATCCATCACCAGCC 59.856 52.381 0.00 0.00 0.00 4.85
2602 2653 1.143481 CATACCATCCATCACCAGCCA 59.857 52.381 0.00 0.00 0.00 4.75
2603 2654 1.521764 TACCATCCATCACCAGCCAT 58.478 50.000 0.00 0.00 0.00 4.40
2604 2655 0.106369 ACCATCCATCACCAGCCATG 60.106 55.000 0.00 0.00 0.00 3.66
2605 2656 0.106369 CCATCCATCACCAGCCATGT 60.106 55.000 0.00 0.00 0.00 3.21
2606 2657 1.687054 CCATCCATCACCAGCCATGTT 60.687 52.381 0.00 0.00 0.00 2.71
2607 2658 2.423231 CCATCCATCACCAGCCATGTTA 60.423 50.000 0.00 0.00 0.00 2.41
2608 2659 2.418368 TCCATCACCAGCCATGTTAC 57.582 50.000 0.00 0.00 0.00 2.50
2609 2660 1.632920 TCCATCACCAGCCATGTTACA 59.367 47.619 0.00 0.00 0.00 2.41
2610 2661 2.019249 CCATCACCAGCCATGTTACAG 58.981 52.381 0.00 0.00 0.00 2.74
2611 2662 2.618816 CCATCACCAGCCATGTTACAGT 60.619 50.000 0.00 0.00 0.00 3.55
2612 2663 3.370421 CCATCACCAGCCATGTTACAGTA 60.370 47.826 0.00 0.00 0.00 2.74
2613 2664 3.328382 TCACCAGCCATGTTACAGTAC 57.672 47.619 0.00 0.00 0.00 2.73
2614 2665 2.635427 TCACCAGCCATGTTACAGTACA 59.365 45.455 0.00 0.00 0.00 2.90
2615 2666 3.263170 TCACCAGCCATGTTACAGTACAT 59.737 43.478 0.00 0.00 39.27 2.29
2616 2667 4.009675 CACCAGCCATGTTACAGTACATT 58.990 43.478 0.00 0.00 36.64 2.71
2617 2668 5.046231 TCACCAGCCATGTTACAGTACATTA 60.046 40.000 0.00 0.00 36.64 1.90
2618 2669 5.822519 CACCAGCCATGTTACAGTACATTAT 59.177 40.000 0.00 0.00 36.64 1.28
2619 2670 5.822519 ACCAGCCATGTTACAGTACATTATG 59.177 40.000 0.00 0.00 36.64 1.90
2620 2671 6.054941 CCAGCCATGTTACAGTACATTATGA 58.945 40.000 0.00 0.00 36.64 2.15
2621 2672 6.203530 CCAGCCATGTTACAGTACATTATGAG 59.796 42.308 0.00 0.00 36.64 2.90
2622 2673 6.763135 CAGCCATGTTACAGTACATTATGAGT 59.237 38.462 0.00 0.00 36.64 3.41
2623 2674 7.280876 CAGCCATGTTACAGTACATTATGAGTT 59.719 37.037 0.00 0.00 36.64 3.01
2624 2675 7.829211 AGCCATGTTACAGTACATTATGAGTTT 59.171 33.333 0.00 0.00 36.64 2.66
2625 2676 8.122952 GCCATGTTACAGTACATTATGAGTTTC 58.877 37.037 0.00 0.00 36.64 2.78
2626 2677 8.328146 CCATGTTACAGTACATTATGAGTTTCG 58.672 37.037 0.00 0.00 36.64 3.46
2627 2678 9.083080 CATGTTACAGTACATTATGAGTTTCGA 57.917 33.333 0.00 0.00 36.64 3.71
2628 2679 9.817809 ATGTTACAGTACATTATGAGTTTCGAT 57.182 29.630 0.00 0.00 35.24 3.59
2629 2680 9.647797 TGTTACAGTACATTATGAGTTTCGATT 57.352 29.630 0.00 0.00 0.00 3.34
2630 2681 9.901724 GTTACAGTACATTATGAGTTTCGATTG 57.098 33.333 0.00 0.00 0.00 2.67
2631 2682 9.647797 TTACAGTACATTATGAGTTTCGATTGT 57.352 29.630 0.00 0.00 0.00 2.71
2633 2684 9.817809 ACAGTACATTATGAGTTTCGATTGTAT 57.182 29.630 0.00 0.00 0.00 2.29
2635 2686 9.817809 AGTACATTATGAGTTTCGATTGTATGT 57.182 29.630 0.00 0.00 0.00 2.29
2638 2689 8.752254 ACATTATGAGTTTCGATTGTATGTACG 58.248 33.333 0.00 0.00 0.00 3.67
2639 2690 7.688478 TTATGAGTTTCGATTGTATGTACGG 57.312 36.000 0.00 0.00 0.00 4.02
2640 2691 3.861113 TGAGTTTCGATTGTATGTACGGC 59.139 43.478 0.00 0.00 0.00 5.68
2641 2692 3.192466 AGTTTCGATTGTATGTACGGCC 58.808 45.455 0.00 0.00 0.00 6.13
2642 2693 2.931325 GTTTCGATTGTATGTACGGCCA 59.069 45.455 2.24 0.00 0.00 5.36
2643 2694 2.212869 TCGATTGTATGTACGGCCAC 57.787 50.000 2.24 0.00 0.00 5.01
2644 2695 1.477295 TCGATTGTATGTACGGCCACA 59.523 47.619 2.24 0.00 0.00 4.17
2645 2696 2.101750 TCGATTGTATGTACGGCCACAT 59.898 45.455 12.89 12.89 41.88 3.21
2646 2697 3.318557 TCGATTGTATGTACGGCCACATA 59.681 43.478 11.01 11.01 39.77 2.29
2647 2698 3.673338 CGATTGTATGTACGGCCACATAG 59.327 47.826 14.56 1.76 41.00 2.23
2648 2699 2.519377 TGTATGTACGGCCACATAGC 57.481 50.000 14.56 10.73 41.00 2.97
2649 2700 2.036387 TGTATGTACGGCCACATAGCT 58.964 47.619 14.56 0.00 41.00 3.32
2650 2701 2.432874 TGTATGTACGGCCACATAGCTT 59.567 45.455 14.56 0.00 41.00 3.74
2651 2702 3.637694 TGTATGTACGGCCACATAGCTTA 59.362 43.478 14.56 2.15 41.00 3.09
2652 2703 2.589798 TGTACGGCCACATAGCTTAC 57.410 50.000 2.24 0.00 0.00 2.34
2653 2704 1.826096 TGTACGGCCACATAGCTTACA 59.174 47.619 2.24 0.00 32.40 2.41
2654 2705 2.234168 TGTACGGCCACATAGCTTACAA 59.766 45.455 2.24 0.00 32.12 2.41
2655 2706 1.734163 ACGGCCACATAGCTTACAAC 58.266 50.000 2.24 0.00 0.00 3.32
2656 2707 1.002659 ACGGCCACATAGCTTACAACA 59.997 47.619 2.24 0.00 0.00 3.33
2657 2708 2.080693 CGGCCACATAGCTTACAACAA 58.919 47.619 2.24 0.00 0.00 2.83
2658 2709 2.486203 CGGCCACATAGCTTACAACAAA 59.514 45.455 2.24 0.00 0.00 2.83
2659 2710 3.057876 CGGCCACATAGCTTACAACAAAA 60.058 43.478 2.24 0.00 0.00 2.44
2660 2711 4.234574 GGCCACATAGCTTACAACAAAAC 58.765 43.478 0.00 0.00 0.00 2.43
2661 2712 4.022329 GGCCACATAGCTTACAACAAAACT 60.022 41.667 0.00 0.00 0.00 2.66
2662 2713 5.508994 GGCCACATAGCTTACAACAAAACTT 60.509 40.000 0.00 0.00 0.00 2.66
2663 2714 5.402270 GCCACATAGCTTACAACAAAACTTG 59.598 40.000 0.00 0.00 0.00 3.16
2664 2715 6.734137 CCACATAGCTTACAACAAAACTTGA 58.266 36.000 0.00 0.00 0.00 3.02
2665 2716 7.199766 CCACATAGCTTACAACAAAACTTGAA 58.800 34.615 0.00 0.00 0.00 2.69
2666 2717 7.704472 CCACATAGCTTACAACAAAACTTGAAA 59.296 33.333 0.00 0.00 0.00 2.69
2667 2718 9.248291 CACATAGCTTACAACAAAACTTGAAAT 57.752 29.630 0.00 0.00 0.00 2.17
2693 2744 8.918202 ACAAGATAGAACATAAGAACACCAAA 57.082 30.769 0.00 0.00 0.00 3.28
2694 2745 9.349713 ACAAGATAGAACATAAGAACACCAAAA 57.650 29.630 0.00 0.00 0.00 2.44
2701 2752 8.504005 AGAACATAAGAACACCAAAATAACTCG 58.496 33.333 0.00 0.00 0.00 4.18
2702 2753 7.141100 ACATAAGAACACCAAAATAACTCGG 57.859 36.000 0.00 0.00 0.00 4.63
2703 2754 6.713450 ACATAAGAACACCAAAATAACTCGGT 59.287 34.615 0.00 0.00 0.00 4.69
2704 2755 7.879160 ACATAAGAACACCAAAATAACTCGGTA 59.121 33.333 0.00 0.00 0.00 4.02
2705 2756 6.796705 AAGAACACCAAAATAACTCGGTAG 57.203 37.500 0.00 0.00 0.00 3.18
2706 2757 6.105397 AGAACACCAAAATAACTCGGTAGA 57.895 37.500 0.00 0.00 0.00 2.59
2707 2758 6.527423 AGAACACCAAAATAACTCGGTAGAA 58.473 36.000 0.00 0.00 0.00 2.10
2708 2759 6.993902 AGAACACCAAAATAACTCGGTAGAAA 59.006 34.615 0.00 0.00 0.00 2.52
2709 2760 7.499895 AGAACACCAAAATAACTCGGTAGAAAA 59.500 33.333 0.00 0.00 0.00 2.29
2710 2761 7.571080 ACACCAAAATAACTCGGTAGAAAAA 57.429 32.000 0.00 0.00 0.00 1.94
2711 2762 8.173542 ACACCAAAATAACTCGGTAGAAAAAT 57.826 30.769 0.00 0.00 0.00 1.82
2712 2763 9.287373 ACACCAAAATAACTCGGTAGAAAAATA 57.713 29.630 0.00 0.00 0.00 1.40
2715 2766 9.233232 CCAAAATAACTCGGTAGAAAAATATGC 57.767 33.333 0.00 0.00 0.00 3.14
2716 2767 9.233232 CAAAATAACTCGGTAGAAAAATATGCC 57.767 33.333 0.00 0.00 0.00 4.40
2717 2768 8.747538 AAATAACTCGGTAGAAAAATATGCCT 57.252 30.769 0.00 0.00 0.00 4.75
2718 2769 7.730364 ATAACTCGGTAGAAAAATATGCCTG 57.270 36.000 0.00 0.00 0.00 4.85
2719 2770 4.451900 ACTCGGTAGAAAAATATGCCTGG 58.548 43.478 0.00 0.00 0.00 4.45
2720 2771 4.163458 ACTCGGTAGAAAAATATGCCTGGA 59.837 41.667 0.00 0.00 0.00 3.86
2721 2772 4.703897 TCGGTAGAAAAATATGCCTGGAG 58.296 43.478 0.00 0.00 0.00 3.86
2722 2773 3.251004 CGGTAGAAAAATATGCCTGGAGC 59.749 47.826 0.00 0.00 44.14 4.70
2733 2784 2.531522 GCCTGGAGCAAAAACAACAT 57.468 45.000 0.00 0.00 42.97 2.71
2734 2785 3.658757 GCCTGGAGCAAAAACAACATA 57.341 42.857 0.00 0.00 42.97 2.29
2735 2786 3.988819 GCCTGGAGCAAAAACAACATAA 58.011 40.909 0.00 0.00 42.97 1.90
2736 2787 4.376146 GCCTGGAGCAAAAACAACATAAA 58.624 39.130 0.00 0.00 42.97 1.40
2737 2788 4.996758 GCCTGGAGCAAAAACAACATAAAT 59.003 37.500 0.00 0.00 42.97 1.40
2738 2789 6.162777 GCCTGGAGCAAAAACAACATAAATA 58.837 36.000 0.00 0.00 42.97 1.40
2739 2790 6.090763 GCCTGGAGCAAAAACAACATAAATAC 59.909 38.462 0.00 0.00 42.97 1.89
2740 2791 7.378181 CCTGGAGCAAAAACAACATAAATACT 58.622 34.615 0.00 0.00 0.00 2.12
2741 2792 7.542130 CCTGGAGCAAAAACAACATAAATACTC 59.458 37.037 0.00 0.00 0.00 2.59
2742 2793 8.177119 TGGAGCAAAAACAACATAAATACTCT 57.823 30.769 0.00 0.00 0.00 3.24
2743 2794 9.290988 TGGAGCAAAAACAACATAAATACTCTA 57.709 29.630 0.00 0.00 0.00 2.43
2744 2795 9.556030 GGAGCAAAAACAACATAAATACTCTAC 57.444 33.333 0.00 0.00 0.00 2.59
2765 2816 9.784680 CTCTACAGATTTCAAAGAATGATTTGG 57.215 33.333 3.74 0.00 39.99 3.28
2766 2817 9.300681 TCTACAGATTTCAAAGAATGATTTGGT 57.699 29.630 3.74 0.00 39.99 3.67
2767 2818 9.350357 CTACAGATTTCAAAGAATGATTTGGTG 57.650 33.333 3.74 0.00 39.99 4.17
2768 2819 7.954835 ACAGATTTCAAAGAATGATTTGGTGA 58.045 30.769 3.74 0.00 39.99 4.02
2769 2820 8.423349 ACAGATTTCAAAGAATGATTTGGTGAA 58.577 29.630 3.74 0.00 39.99 3.18
2770 2821 8.922676 CAGATTTCAAAGAATGATTTGGTGAAG 58.077 33.333 3.74 0.00 39.99 3.02
2771 2822 8.645110 AGATTTCAAAGAATGATTTGGTGAAGT 58.355 29.630 3.74 0.00 39.99 3.01
2772 2823 9.264719 GATTTCAAAGAATGATTTGGTGAAGTT 57.735 29.630 3.74 0.00 39.99 2.66
2773 2824 8.647143 TTTCAAAGAATGATTTGGTGAAGTTC 57.353 30.769 0.00 0.00 39.99 3.01
2774 2825 6.748132 TCAAAGAATGATTTGGTGAAGTTCC 58.252 36.000 0.00 0.00 39.99 3.62
2775 2826 6.550854 TCAAAGAATGATTTGGTGAAGTTCCT 59.449 34.615 0.00 0.00 39.99 3.36
2776 2827 7.723616 TCAAAGAATGATTTGGTGAAGTTCCTA 59.276 33.333 0.00 0.00 39.99 2.94
2777 2828 8.526147 CAAAGAATGATTTGGTGAAGTTCCTAT 58.474 33.333 0.00 0.00 36.68 2.57
2778 2829 9.753674 AAAGAATGATTTGGTGAAGTTCCTATA 57.246 29.630 0.00 0.00 0.00 1.31
2779 2830 9.927081 AAGAATGATTTGGTGAAGTTCCTATAT 57.073 29.630 0.00 0.00 0.00 0.86
2780 2831 9.927081 AGAATGATTTGGTGAAGTTCCTATATT 57.073 29.630 0.00 0.00 0.00 1.28
2783 2834 9.699410 ATGATTTGGTGAAGTTCCTATATTTCA 57.301 29.630 0.00 0.00 0.00 2.69
2784 2835 9.527157 TGATTTGGTGAAGTTCCTATATTTCAA 57.473 29.630 0.00 0.00 31.98 2.69
2787 2838 7.372451 TGGTGAAGTTCCTATATTTCAAACG 57.628 36.000 0.00 0.00 31.98 3.60
2788 2839 6.373216 TGGTGAAGTTCCTATATTTCAAACGG 59.627 38.462 0.00 0.00 31.98 4.44
2789 2840 6.183360 GGTGAAGTTCCTATATTTCAAACGGG 60.183 42.308 0.00 0.00 31.98 5.28
2790 2841 5.883673 TGAAGTTCCTATATTTCAAACGGGG 59.116 40.000 0.00 0.00 0.00 5.73
2791 2842 5.446260 AGTTCCTATATTTCAAACGGGGT 57.554 39.130 0.00 0.00 0.00 4.95
2792 2843 5.434408 AGTTCCTATATTTCAAACGGGGTC 58.566 41.667 0.00 0.00 0.00 4.46
2793 2844 5.191124 AGTTCCTATATTTCAAACGGGGTCT 59.809 40.000 0.00 0.00 0.00 3.85
2794 2845 6.384886 AGTTCCTATATTTCAAACGGGGTCTA 59.615 38.462 0.00 0.00 0.00 2.59
2795 2846 6.415206 TCCTATATTTCAAACGGGGTCTAG 57.585 41.667 0.00 0.00 0.00 2.43
2796 2847 5.901276 TCCTATATTTCAAACGGGGTCTAGT 59.099 40.000 0.00 0.00 0.00 2.57
2797 2848 6.041296 TCCTATATTTCAAACGGGGTCTAGTC 59.959 42.308 0.00 0.00 0.00 2.59
2798 2849 5.952347 ATATTTCAAACGGGGTCTAGTCT 57.048 39.130 0.00 0.00 0.00 3.24
2799 2850 7.232127 CCTATATTTCAAACGGGGTCTAGTCTA 59.768 40.741 0.00 0.00 0.00 2.59
2800 2851 5.750352 ATTTCAAACGGGGTCTAGTCTAA 57.250 39.130 0.00 0.00 0.00 2.10
2801 2852 5.549742 TTTCAAACGGGGTCTAGTCTAAA 57.450 39.130 0.00 0.00 0.00 1.85
2802 2853 5.549742 TTCAAACGGGGTCTAGTCTAAAA 57.450 39.130 0.00 0.00 0.00 1.52
2803 2854 5.549742 TCAAACGGGGTCTAGTCTAAAAA 57.450 39.130 0.00 0.00 0.00 1.94
2804 2855 5.544650 TCAAACGGGGTCTAGTCTAAAAAG 58.455 41.667 0.00 0.00 0.00 2.27
2805 2856 5.070847 TCAAACGGGGTCTAGTCTAAAAAGT 59.929 40.000 0.00 0.00 0.00 2.66
2806 2857 6.267471 TCAAACGGGGTCTAGTCTAAAAAGTA 59.733 38.462 0.00 0.00 0.00 2.24
2807 2858 6.670695 AACGGGGTCTAGTCTAAAAAGTAA 57.329 37.500 0.00 0.00 0.00 2.24
2808 2859 6.670695 ACGGGGTCTAGTCTAAAAAGTAAA 57.329 37.500 0.00 0.00 0.00 2.01
2809 2860 7.066307 ACGGGGTCTAGTCTAAAAAGTAAAA 57.934 36.000 0.00 0.00 0.00 1.52
2810 2861 7.683578 ACGGGGTCTAGTCTAAAAAGTAAAAT 58.316 34.615 0.00 0.00 0.00 1.82
2811 2862 8.159447 ACGGGGTCTAGTCTAAAAAGTAAAATT 58.841 33.333 0.00 0.00 0.00 1.82
2812 2863 9.657419 CGGGGTCTAGTCTAAAAAGTAAAATTA 57.343 33.333 0.00 0.00 0.00 1.40
2832 2883 6.552445 ATTAGGACTATCACATAGGATGGC 57.448 41.667 0.00 0.00 37.18 4.40
2833 2884 3.177228 AGGACTATCACATAGGATGGCC 58.823 50.000 0.00 0.00 37.18 5.36
2834 2885 2.906389 GGACTATCACATAGGATGGCCA 59.094 50.000 8.56 8.56 37.18 5.36
2835 2886 3.307059 GGACTATCACATAGGATGGCCAC 60.307 52.174 8.16 1.35 37.18 5.01
2836 2887 3.580458 GACTATCACATAGGATGGCCACT 59.420 47.826 8.16 3.79 37.18 4.00
2837 2888 3.580458 ACTATCACATAGGATGGCCACTC 59.420 47.826 8.16 7.14 37.18 3.51
2838 2889 1.878211 TCACATAGGATGGCCACTCA 58.122 50.000 8.16 0.00 36.29 3.41
2839 2890 2.411583 TCACATAGGATGGCCACTCAT 58.588 47.619 8.16 7.62 36.29 2.90
2840 2891 3.586429 TCACATAGGATGGCCACTCATA 58.414 45.455 8.16 9.79 36.29 2.15
2841 2892 3.324846 TCACATAGGATGGCCACTCATAC 59.675 47.826 8.16 0.00 36.29 2.39
2842 2893 2.300152 ACATAGGATGGCCACTCATACG 59.700 50.000 8.16 4.48 33.33 3.06
2843 2894 2.375014 TAGGATGGCCACTCATACGA 57.625 50.000 8.16 0.00 33.33 3.43
2844 2895 1.496060 AGGATGGCCACTCATACGAA 58.504 50.000 8.16 0.00 33.33 3.85
2845 2896 1.414181 AGGATGGCCACTCATACGAAG 59.586 52.381 8.16 0.00 33.33 3.79
2846 2897 1.412710 GGATGGCCACTCATACGAAGA 59.587 52.381 8.16 0.00 0.00 2.87
2847 2898 2.158957 GGATGGCCACTCATACGAAGAA 60.159 50.000 8.16 0.00 0.00 2.52
2848 2899 2.380084 TGGCCACTCATACGAAGAAC 57.620 50.000 0.00 0.00 0.00 3.01
2849 2900 1.066430 TGGCCACTCATACGAAGAACC 60.066 52.381 0.00 0.00 0.00 3.62
2850 2901 1.066430 GGCCACTCATACGAAGAACCA 60.066 52.381 0.00 0.00 0.00 3.67
2851 2902 2.614481 GGCCACTCATACGAAGAACCAA 60.614 50.000 0.00 0.00 0.00 3.67
2852 2903 2.673368 GCCACTCATACGAAGAACCAAG 59.327 50.000 0.00 0.00 0.00 3.61
2853 2904 3.616560 GCCACTCATACGAAGAACCAAGA 60.617 47.826 0.00 0.00 0.00 3.02
2854 2905 4.566004 CCACTCATACGAAGAACCAAGAA 58.434 43.478 0.00 0.00 0.00 2.52
2855 2906 4.994852 CCACTCATACGAAGAACCAAGAAA 59.005 41.667 0.00 0.00 0.00 2.52
2856 2907 5.468746 CCACTCATACGAAGAACCAAGAAAA 59.531 40.000 0.00 0.00 0.00 2.29
2857 2908 6.149474 CCACTCATACGAAGAACCAAGAAAAT 59.851 38.462 0.00 0.00 0.00 1.82
2858 2909 7.333423 CCACTCATACGAAGAACCAAGAAAATA 59.667 37.037 0.00 0.00 0.00 1.40
2859 2910 8.169268 CACTCATACGAAGAACCAAGAAAATAC 58.831 37.037 0.00 0.00 0.00 1.89
2860 2911 8.095169 ACTCATACGAAGAACCAAGAAAATACT 58.905 33.333 0.00 0.00 0.00 2.12
2861 2912 8.251750 TCATACGAAGAACCAAGAAAATACTG 57.748 34.615 0.00 0.00 0.00 2.74
2862 2913 8.092068 TCATACGAAGAACCAAGAAAATACTGA 58.908 33.333 0.00 0.00 0.00 3.41
2863 2914 6.541111 ACGAAGAACCAAGAAAATACTGAC 57.459 37.500 0.00 0.00 0.00 3.51
2864 2915 6.289064 ACGAAGAACCAAGAAAATACTGACT 58.711 36.000 0.00 0.00 0.00 3.41
2865 2916 6.766467 ACGAAGAACCAAGAAAATACTGACTT 59.234 34.615 0.00 0.00 0.00 3.01
2866 2917 7.282450 ACGAAGAACCAAGAAAATACTGACTTT 59.718 33.333 0.00 0.00 0.00 2.66
2867 2918 8.129211 CGAAGAACCAAGAAAATACTGACTTTT 58.871 33.333 0.00 0.00 0.00 2.27
2888 2939 9.830975 ACTTTTAATATAAATGAATTGTGGCCC 57.169 29.630 0.00 0.00 0.00 5.80
2890 2941 9.829507 TTTTAATATAAATGAATTGTGGCCCTG 57.170 29.630 0.00 0.00 0.00 4.45
2891 2942 8.774546 TTAATATAAATGAATTGTGGCCCTGA 57.225 30.769 0.00 0.00 0.00 3.86
2892 2943 7.860649 AATATAAATGAATTGTGGCCCTGAT 57.139 32.000 0.00 0.00 0.00 2.90
2893 2944 8.954834 AATATAAATGAATTGTGGCCCTGATA 57.045 30.769 0.00 0.00 0.00 2.15
2894 2945 9.551339 AATATAAATGAATTGTGGCCCTGATAT 57.449 29.630 0.00 0.00 0.00 1.63
2895 2946 5.540400 AAATGAATTGTGGCCCTGATATG 57.460 39.130 0.00 0.00 0.00 1.78
2896 2947 3.949586 TGAATTGTGGCCCTGATATGA 57.050 42.857 0.00 0.00 0.00 2.15
2897 2948 4.458256 TGAATTGTGGCCCTGATATGAT 57.542 40.909 0.00 0.00 0.00 2.45
2898 2949 4.806892 TGAATTGTGGCCCTGATATGATT 58.193 39.130 0.00 0.00 0.00 2.57
2899 2950 4.585581 TGAATTGTGGCCCTGATATGATTG 59.414 41.667 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 8.487970 CAGCAACGACTATATCAATTCGTAAAT 58.512 33.333 0.00 0.00 43.64 1.40
74 75 2.423538 GGATTTTGGCAGCAACGACTAT 59.576 45.455 0.00 0.00 0.00 2.12
82 83 0.762082 TGTTGGGGATTTTGGCAGCA 60.762 50.000 0.00 0.00 0.00 4.41
120 121 2.483014 TTATTTGTCGTCCCCCTGTG 57.517 50.000 0.00 0.00 0.00 3.66
126 127 6.581166 GTCAACTGAAATTTATTTGTCGTCCC 59.419 38.462 0.00 0.00 0.00 4.46
249 251 5.014858 TCAATAGTAACTCCCTCAACGTCT 58.985 41.667 0.00 0.00 0.00 4.18
268 271 1.004745 CACCTGTGGGCTAGGTTCAAT 59.995 52.381 6.01 0.00 46.13 2.57
564 571 9.777575 TTTATTTTCGCTGTAAAGGTAATAAGC 57.222 29.630 0.00 0.00 0.00 3.09
592 601 3.746492 GTCGGCTGTTTTGTCTTGTAGAT 59.254 43.478 0.00 0.00 0.00 1.98
598 607 1.940613 GTGAGTCGGCTGTTTTGTCTT 59.059 47.619 0.00 0.00 0.00 3.01
710 719 7.018952 AGGATGGGGATGATATGTTCTACAAAT 59.981 37.037 0.00 0.00 0.00 2.32
722 732 2.421197 TGCTGAGGATGGGGATGATA 57.579 50.000 0.00 0.00 0.00 2.15
756 768 4.523083 AGATCTCTAAGATAGCTAGGCCG 58.477 47.826 0.00 0.00 34.53 6.13
875 896 4.452114 GGCCATGGTTGTGAATTCTTTTTC 59.548 41.667 14.67 0.00 0.00 2.29
881 903 2.099756 GCTAGGCCATGGTTGTGAATTC 59.900 50.000 14.67 0.00 0.00 2.17
953 976 3.761218 TCAAACACAGCAAACTCTCCAAA 59.239 39.130 0.00 0.00 0.00 3.28
1446 1469 1.226688 CGCGAAGAAGCAGATCCGA 60.227 57.895 0.00 0.00 36.85 4.55
1644 1667 1.151450 CCTGTTTGGAGTGGCCTGT 59.849 57.895 3.32 0.00 38.35 4.00
1803 1844 2.496070 CACGGATTTAGTGTCCTCCTCA 59.504 50.000 0.00 0.00 35.08 3.86
1824 1865 1.472276 CTTCGTCATCCGCGTAGTGC 61.472 60.000 4.92 0.00 41.47 4.40
1972 2015 3.911698 ACTGCCGCAGTCGTCACA 61.912 61.111 20.59 0.00 41.21 3.58
2017 2060 7.633621 CAGTATGTAATAAGAACCATGCACAG 58.366 38.462 0.00 0.00 0.00 3.66
2039 2082 6.257849 CACGACATGCAACCTATAAATACAGT 59.742 38.462 0.00 0.00 0.00 3.55
2040 2083 6.649436 CACGACATGCAACCTATAAATACAG 58.351 40.000 0.00 0.00 0.00 2.74
2041 2084 6.597262 CACGACATGCAACCTATAAATACA 57.403 37.500 0.00 0.00 0.00 2.29
2100 2145 5.013495 AGGAATGCTATACACACATAGGCAT 59.987 40.000 0.00 0.00 31.96 4.40
2108 2153 4.137116 TGACCAGGAATGCTATACACAC 57.863 45.455 0.00 0.00 0.00 3.82
2161 2206 9.147732 TGACATTGTACATCTCCATTAGATACT 57.852 33.333 0.00 0.00 43.42 2.12
2162 2207 9.935241 ATGACATTGTACATCTCCATTAGATAC 57.065 33.333 0.00 0.00 43.42 2.24
2168 2213 5.068198 GGCAATGACATTGTACATCTCCATT 59.932 40.000 25.18 2.61 42.20 3.16
2224 2269 2.509569 ACATTACACATTTGCCCGACA 58.490 42.857 0.00 0.00 0.00 4.35
2231 2276 7.116233 GGTGCTTAAGGAAACATTACACATTTG 59.884 37.037 4.29 0.00 0.00 2.32
2255 2300 8.044908 AGTTCGACAAACCATTTATGTATAGGT 58.955 33.333 0.00 0.00 38.76 3.08
2257 2302 9.093970 TGAGTTCGACAAACCATTTATGTATAG 57.906 33.333 0.00 0.00 38.76 1.31
2262 2307 6.033831 GCATTGAGTTCGACAAACCATTTATG 59.966 38.462 0.00 0.00 38.76 1.90
2265 2310 4.298332 GCATTGAGTTCGACAAACCATTT 58.702 39.130 0.00 0.00 38.76 2.32
2266 2311 3.305335 GGCATTGAGTTCGACAAACCATT 60.305 43.478 0.00 0.00 38.76 3.16
2267 2312 2.228822 GGCATTGAGTTCGACAAACCAT 59.771 45.455 0.00 0.00 38.76 3.55
2268 2313 1.606668 GGCATTGAGTTCGACAAACCA 59.393 47.619 0.00 0.00 38.76 3.67
2274 2319 3.365364 CCAAAAGAGGCATTGAGTTCGAC 60.365 47.826 0.00 0.00 0.00 4.20
2276 2321 2.554032 ACCAAAAGAGGCATTGAGTTCG 59.446 45.455 0.00 0.00 0.00 3.95
2373 2423 5.470098 CACTACCAAACAAAGCAGACTGTAT 59.530 40.000 3.99 0.00 0.00 2.29
2378 2428 2.618709 AGCACTACCAAACAAAGCAGAC 59.381 45.455 0.00 0.00 0.00 3.51
2381 2431 4.393834 TCATAGCACTACCAAACAAAGCA 58.606 39.130 0.00 0.00 0.00 3.91
2426 2477 5.785423 TGCCCAGCCACTAGTAGAAATATAT 59.215 40.000 3.59 0.00 0.00 0.86
2427 2478 5.011738 GTGCCCAGCCACTAGTAGAAATATA 59.988 44.000 3.59 0.00 33.02 0.86
2428 2479 3.973973 TGCCCAGCCACTAGTAGAAATAT 59.026 43.478 3.59 0.00 0.00 1.28
2429 2480 3.134081 GTGCCCAGCCACTAGTAGAAATA 59.866 47.826 3.59 0.00 33.02 1.40
2430 2481 2.092914 GTGCCCAGCCACTAGTAGAAAT 60.093 50.000 3.59 0.00 33.02 2.17
2431 2482 1.278127 GTGCCCAGCCACTAGTAGAAA 59.722 52.381 3.59 0.00 33.02 2.52
2432 2483 0.902531 GTGCCCAGCCACTAGTAGAA 59.097 55.000 3.59 0.00 33.02 2.10
2433 2484 1.320344 CGTGCCCAGCCACTAGTAGA 61.320 60.000 3.59 0.00 33.60 2.59
2434 2485 1.141881 CGTGCCCAGCCACTAGTAG 59.858 63.158 0.00 0.00 33.60 2.57
2435 2486 3.014085 GCGTGCCCAGCCACTAGTA 62.014 63.158 0.00 0.00 33.60 1.82
2436 2487 4.394712 GCGTGCCCAGCCACTAGT 62.395 66.667 0.00 0.00 33.60 2.57
2455 2506 4.976925 CATAGGAGGCGCGCCCTG 62.977 72.222 44.47 28.56 46.60 4.45
2463 2514 0.811616 CACAGGAACGCATAGGAGGC 60.812 60.000 0.00 0.00 0.00 4.70
2464 2515 0.811616 GCACAGGAACGCATAGGAGG 60.812 60.000 0.00 0.00 0.00 4.30
2465 2516 1.148157 CGCACAGGAACGCATAGGAG 61.148 60.000 0.00 0.00 0.00 3.69
2466 2517 1.153647 CGCACAGGAACGCATAGGA 60.154 57.895 0.00 0.00 0.00 2.94
2467 2518 0.179121 TACGCACAGGAACGCATAGG 60.179 55.000 0.00 0.00 0.00 2.57
2468 2519 1.787155 GATACGCACAGGAACGCATAG 59.213 52.381 0.00 0.00 0.00 2.23
2469 2520 1.135333 TGATACGCACAGGAACGCATA 59.865 47.619 0.00 0.00 0.00 3.14
2470 2521 0.108377 TGATACGCACAGGAACGCAT 60.108 50.000 0.00 0.00 0.00 4.73
2471 2522 0.735978 CTGATACGCACAGGAACGCA 60.736 55.000 0.00 0.00 0.00 5.24
2472 2523 0.736325 ACTGATACGCACAGGAACGC 60.736 55.000 0.00 0.00 39.38 4.84
2473 2524 1.135373 AGACTGATACGCACAGGAACG 60.135 52.381 0.00 0.00 39.38 3.95
2474 2525 2.656560 AGACTGATACGCACAGGAAC 57.343 50.000 0.00 0.00 39.38 3.62
2475 2526 2.099263 GCTAGACTGATACGCACAGGAA 59.901 50.000 0.00 0.00 39.38 3.36
2476 2527 1.676529 GCTAGACTGATACGCACAGGA 59.323 52.381 0.00 0.00 39.38 3.86
2477 2528 1.678627 AGCTAGACTGATACGCACAGG 59.321 52.381 0.00 0.00 39.38 4.00
2496 2547 3.004862 TGCACATTCACAGCTACATCAG 58.995 45.455 0.00 0.00 0.00 2.90
2497 2548 3.056588 TGCACATTCACAGCTACATCA 57.943 42.857 0.00 0.00 0.00 3.07
2498 2549 5.686834 CATATGCACATTCACAGCTACATC 58.313 41.667 0.00 0.00 0.00 3.06
2499 2550 4.023450 GCATATGCACATTCACAGCTACAT 60.023 41.667 22.84 0.00 41.59 2.29
2500 2551 3.313249 GCATATGCACATTCACAGCTACA 59.687 43.478 22.84 0.00 41.59 2.74
2501 2552 3.605461 CGCATATGCACATTCACAGCTAC 60.605 47.826 26.52 0.00 42.21 3.58
2502 2553 2.545106 CGCATATGCACATTCACAGCTA 59.455 45.455 26.52 0.00 42.21 3.32
2503 2554 1.332686 CGCATATGCACATTCACAGCT 59.667 47.619 26.52 0.00 42.21 4.24
2504 2555 1.598676 CCGCATATGCACATTCACAGC 60.599 52.381 26.52 0.00 42.21 4.40
2505 2556 1.672363 ACCGCATATGCACATTCACAG 59.328 47.619 26.52 7.41 42.21 3.66
2506 2557 1.670295 GACCGCATATGCACATTCACA 59.330 47.619 26.52 0.00 42.21 3.58
2507 2558 1.002468 GGACCGCATATGCACATTCAC 60.002 52.381 26.52 10.16 42.21 3.18
2508 2559 1.308047 GGACCGCATATGCACATTCA 58.692 50.000 26.52 0.00 42.21 2.57
2509 2560 1.265095 CTGGACCGCATATGCACATTC 59.735 52.381 26.52 15.41 42.21 2.67
2510 2561 1.134128 TCTGGACCGCATATGCACATT 60.134 47.619 26.52 7.71 42.21 2.71
2511 2562 0.469494 TCTGGACCGCATATGCACAT 59.531 50.000 26.52 11.49 42.21 3.21
2512 2563 0.179076 CTCTGGACCGCATATGCACA 60.179 55.000 26.52 17.23 42.21 4.57
2513 2564 0.882042 CCTCTGGACCGCATATGCAC 60.882 60.000 26.52 16.26 42.21 4.57
2514 2565 1.048160 TCCTCTGGACCGCATATGCA 61.048 55.000 26.52 6.50 42.21 3.96
2515 2566 0.320247 CTCCTCTGGACCGCATATGC 60.320 60.000 18.08 18.08 37.78 3.14
2516 2567 0.320247 GCTCCTCTGGACCGCATATG 60.320 60.000 0.00 0.00 0.00 1.78
2517 2568 0.760567 TGCTCCTCTGGACCGCATAT 60.761 55.000 0.00 0.00 29.79 1.78
2518 2569 1.381191 TGCTCCTCTGGACCGCATA 60.381 57.895 0.00 0.00 29.79 3.14
2519 2570 2.685017 TGCTCCTCTGGACCGCAT 60.685 61.111 0.00 0.00 29.79 4.73
2520 2571 3.695606 GTGCTCCTCTGGACCGCA 61.696 66.667 0.00 0.00 31.84 5.69
2521 2572 2.527951 ATTGTGCTCCTCTGGACCGC 62.528 60.000 0.00 0.00 0.00 5.68
2522 2573 0.036010 AATTGTGCTCCTCTGGACCG 60.036 55.000 0.00 0.00 0.00 4.79
2523 2574 3.567478 ATAATTGTGCTCCTCTGGACC 57.433 47.619 0.00 0.00 0.00 4.46
2524 2575 6.599638 AGTTTAATAATTGTGCTCCTCTGGAC 59.400 38.462 0.00 0.00 0.00 4.02
2525 2576 6.721318 AGTTTAATAATTGTGCTCCTCTGGA 58.279 36.000 0.00 0.00 0.00 3.86
2526 2577 7.254455 CGTAGTTTAATAATTGTGCTCCTCTGG 60.254 40.741 0.00 0.00 0.00 3.86
2527 2578 7.491372 TCGTAGTTTAATAATTGTGCTCCTCTG 59.509 37.037 0.00 0.00 0.00 3.35
2528 2579 7.553334 TCGTAGTTTAATAATTGTGCTCCTCT 58.447 34.615 0.00 0.00 0.00 3.69
2529 2580 7.766219 TCGTAGTTTAATAATTGTGCTCCTC 57.234 36.000 0.00 0.00 0.00 3.71
2530 2581 7.604927 TGTTCGTAGTTTAATAATTGTGCTCCT 59.395 33.333 0.00 0.00 0.00 3.69
2531 2582 7.691050 GTGTTCGTAGTTTAATAATTGTGCTCC 59.309 37.037 0.00 0.00 0.00 4.70
2532 2583 8.225107 TGTGTTCGTAGTTTAATAATTGTGCTC 58.775 33.333 0.00 0.00 0.00 4.26
2533 2584 8.090250 TGTGTTCGTAGTTTAATAATTGTGCT 57.910 30.769 0.00 0.00 0.00 4.40
2534 2585 8.013378 ACTGTGTTCGTAGTTTAATAATTGTGC 58.987 33.333 0.00 0.00 0.00 4.57
2535 2586 9.872757 AACTGTGTTCGTAGTTTAATAATTGTG 57.127 29.630 0.00 0.00 33.59 3.33
2540 2591 9.410556 GTCCTAACTGTGTTCGTAGTTTAATAA 57.589 33.333 0.00 0.00 38.11 1.40
2541 2592 7.750458 CGTCCTAACTGTGTTCGTAGTTTAATA 59.250 37.037 0.00 0.00 38.11 0.98
2542 2593 6.583806 CGTCCTAACTGTGTTCGTAGTTTAAT 59.416 38.462 0.00 0.00 38.11 1.40
2543 2594 5.914635 CGTCCTAACTGTGTTCGTAGTTTAA 59.085 40.000 0.00 0.00 38.11 1.52
2544 2595 5.238432 TCGTCCTAACTGTGTTCGTAGTTTA 59.762 40.000 0.00 0.00 38.11 2.01
2545 2596 4.036734 TCGTCCTAACTGTGTTCGTAGTTT 59.963 41.667 0.00 0.00 38.11 2.66
2546 2597 3.565482 TCGTCCTAACTGTGTTCGTAGTT 59.435 43.478 0.00 0.00 40.09 2.24
2547 2598 3.058639 GTCGTCCTAACTGTGTTCGTAGT 60.059 47.826 0.00 0.00 0.00 2.73
2548 2599 3.486584 GTCGTCCTAACTGTGTTCGTAG 58.513 50.000 0.00 0.00 0.00 3.51
2549 2600 2.096268 CGTCGTCCTAACTGTGTTCGTA 60.096 50.000 0.00 0.00 0.00 3.43
2550 2601 1.334419 CGTCGTCCTAACTGTGTTCGT 60.334 52.381 0.00 0.00 0.00 3.85
2551 2602 1.069703 TCGTCGTCCTAACTGTGTTCG 60.070 52.381 0.00 0.00 0.00 3.95
2552 2603 2.693797 TCGTCGTCCTAACTGTGTTC 57.306 50.000 0.00 0.00 0.00 3.18
2553 2604 2.925306 GCATCGTCGTCCTAACTGTGTT 60.925 50.000 0.00 0.00 0.00 3.32
2554 2605 1.402456 GCATCGTCGTCCTAACTGTGT 60.402 52.381 0.00 0.00 0.00 3.72
2555 2606 1.135373 AGCATCGTCGTCCTAACTGTG 60.135 52.381 0.00 0.00 0.00 3.66
2556 2607 1.174783 AGCATCGTCGTCCTAACTGT 58.825 50.000 0.00 0.00 0.00 3.55
2557 2608 3.416119 TTAGCATCGTCGTCCTAACTG 57.584 47.619 0.00 0.00 0.00 3.16
2558 2609 3.243434 CCATTAGCATCGTCGTCCTAACT 60.243 47.826 0.00 0.00 0.00 2.24
2559 2610 3.050619 CCATTAGCATCGTCGTCCTAAC 58.949 50.000 0.00 0.00 0.00 2.34
2560 2611 2.953648 TCCATTAGCATCGTCGTCCTAA 59.046 45.455 0.00 0.00 0.00 2.69
2561 2612 2.292569 GTCCATTAGCATCGTCGTCCTA 59.707 50.000 0.00 0.00 0.00 2.94
2562 2613 1.067212 GTCCATTAGCATCGTCGTCCT 59.933 52.381 0.00 0.00 0.00 3.85
2563 2614 1.202371 TGTCCATTAGCATCGTCGTCC 60.202 52.381 0.00 0.00 0.00 4.79
2564 2615 2.203800 TGTCCATTAGCATCGTCGTC 57.796 50.000 0.00 0.00 0.00 4.20
2565 2616 2.890808 ATGTCCATTAGCATCGTCGT 57.109 45.000 0.00 0.00 0.00 4.34
2566 2617 2.987149 GGTATGTCCATTAGCATCGTCG 59.013 50.000 0.00 0.00 35.97 5.12
2567 2618 3.990092 TGGTATGTCCATTAGCATCGTC 58.010 45.455 0.00 0.00 41.93 4.20
2579 2630 2.811873 GCTGGTGATGGATGGTATGTCC 60.812 54.545 0.00 0.00 36.26 4.02
2580 2631 2.498167 GCTGGTGATGGATGGTATGTC 58.502 52.381 0.00 0.00 0.00 3.06
2581 2632 1.143684 GGCTGGTGATGGATGGTATGT 59.856 52.381 0.00 0.00 0.00 2.29
2582 2633 1.143481 TGGCTGGTGATGGATGGTATG 59.857 52.381 0.00 0.00 0.00 2.39
2583 2634 1.521764 TGGCTGGTGATGGATGGTAT 58.478 50.000 0.00 0.00 0.00 2.73
2584 2635 1.143481 CATGGCTGGTGATGGATGGTA 59.857 52.381 0.00 0.00 0.00 3.25
2585 2636 0.106369 CATGGCTGGTGATGGATGGT 60.106 55.000 0.00 0.00 0.00 3.55
2586 2637 0.106369 ACATGGCTGGTGATGGATGG 60.106 55.000 0.00 0.00 0.00 3.51
2587 2638 1.771565 AACATGGCTGGTGATGGATG 58.228 50.000 0.00 0.00 0.00 3.51
2588 2639 2.241941 TGTAACATGGCTGGTGATGGAT 59.758 45.455 0.00 0.00 0.00 3.41
2589 2640 1.632920 TGTAACATGGCTGGTGATGGA 59.367 47.619 0.00 0.00 0.00 3.41
2590 2641 2.019249 CTGTAACATGGCTGGTGATGG 58.981 52.381 0.00 0.00 0.00 3.51
2591 2642 2.715046 ACTGTAACATGGCTGGTGATG 58.285 47.619 0.00 0.00 0.00 3.07
2592 2643 3.263170 TGTACTGTAACATGGCTGGTGAT 59.737 43.478 0.00 0.00 0.00 3.06
2593 2644 2.635427 TGTACTGTAACATGGCTGGTGA 59.365 45.455 0.00 0.00 0.00 4.02
2594 2645 3.052455 TGTACTGTAACATGGCTGGTG 57.948 47.619 0.00 0.00 0.00 4.17
2595 2646 4.301072 AATGTACTGTAACATGGCTGGT 57.699 40.909 0.00 0.00 39.98 4.00
2596 2647 6.054941 TCATAATGTACTGTAACATGGCTGG 58.945 40.000 0.00 0.00 39.98 4.85
2597 2648 6.763135 ACTCATAATGTACTGTAACATGGCTG 59.237 38.462 0.00 0.00 39.98 4.85
2598 2649 6.889198 ACTCATAATGTACTGTAACATGGCT 58.111 36.000 0.00 0.00 39.98 4.75
2599 2650 7.553881 AACTCATAATGTACTGTAACATGGC 57.446 36.000 0.00 0.00 39.98 4.40
2600 2651 8.328146 CGAAACTCATAATGTACTGTAACATGG 58.672 37.037 0.00 0.00 39.98 3.66
2601 2652 9.083080 TCGAAACTCATAATGTACTGTAACATG 57.917 33.333 0.00 0.00 39.98 3.21
2602 2653 9.817809 ATCGAAACTCATAATGTACTGTAACAT 57.182 29.630 0.00 0.00 41.87 2.71
2603 2654 9.647797 AATCGAAACTCATAATGTACTGTAACA 57.352 29.630 0.00 0.00 0.00 2.41
2604 2655 9.901724 CAATCGAAACTCATAATGTACTGTAAC 57.098 33.333 0.00 0.00 0.00 2.50
2605 2656 9.647797 ACAATCGAAACTCATAATGTACTGTAA 57.352 29.630 0.00 0.00 0.00 2.41
2607 2658 9.817809 ATACAATCGAAACTCATAATGTACTGT 57.182 29.630 0.00 0.00 0.00 3.55
2609 2660 9.817809 ACATACAATCGAAACTCATAATGTACT 57.182 29.630 0.00 0.00 0.00 2.73
2612 2663 8.752254 CGTACATACAATCGAAACTCATAATGT 58.248 33.333 0.00 0.00 0.00 2.71
2613 2664 8.214472 CCGTACATACAATCGAAACTCATAATG 58.786 37.037 0.00 0.00 0.00 1.90
2614 2665 7.095774 GCCGTACATACAATCGAAACTCATAAT 60.096 37.037 0.00 0.00 0.00 1.28
2615 2666 6.199531 GCCGTACATACAATCGAAACTCATAA 59.800 38.462 0.00 0.00 0.00 1.90
2616 2667 5.688621 GCCGTACATACAATCGAAACTCATA 59.311 40.000 0.00 0.00 0.00 2.15
2617 2668 4.506654 GCCGTACATACAATCGAAACTCAT 59.493 41.667 0.00 0.00 0.00 2.90
2618 2669 3.861113 GCCGTACATACAATCGAAACTCA 59.139 43.478 0.00 0.00 0.00 3.41
2619 2670 3.244579 GGCCGTACATACAATCGAAACTC 59.755 47.826 0.00 0.00 0.00 3.01
2620 2671 3.192466 GGCCGTACATACAATCGAAACT 58.808 45.455 0.00 0.00 0.00 2.66
2621 2672 2.931325 TGGCCGTACATACAATCGAAAC 59.069 45.455 0.00 0.00 0.00 2.78
2622 2673 2.931325 GTGGCCGTACATACAATCGAAA 59.069 45.455 0.00 0.00 0.00 3.46
2623 2674 2.094130 TGTGGCCGTACATACAATCGAA 60.094 45.455 0.00 0.00 0.00 3.71
2624 2675 1.477295 TGTGGCCGTACATACAATCGA 59.523 47.619 0.00 0.00 0.00 3.59
2625 2676 1.929230 TGTGGCCGTACATACAATCG 58.071 50.000 0.00 0.00 0.00 3.34
2626 2677 3.432252 GCTATGTGGCCGTACATACAATC 59.568 47.826 11.01 0.23 41.31 2.67
2627 2678 3.071023 AGCTATGTGGCCGTACATACAAT 59.929 43.478 11.01 0.00 41.31 2.71
2628 2679 2.432874 AGCTATGTGGCCGTACATACAA 59.567 45.455 11.01 0.00 41.31 2.41
2629 2680 2.036387 AGCTATGTGGCCGTACATACA 58.964 47.619 11.01 2.96 41.31 2.29
2630 2681 2.814280 AGCTATGTGGCCGTACATAC 57.186 50.000 11.01 8.85 41.31 2.39
2631 2682 3.637694 TGTAAGCTATGTGGCCGTACATA 59.362 43.478 13.67 13.67 41.31 2.29
2632 2683 2.432874 TGTAAGCTATGTGGCCGTACAT 59.567 45.455 12.89 12.89 43.34 2.29
2633 2684 1.826096 TGTAAGCTATGTGGCCGTACA 59.174 47.619 0.00 0.00 33.65 2.90
2634 2685 2.589798 TGTAAGCTATGTGGCCGTAC 57.410 50.000 0.00 0.00 0.00 3.67
2635 2686 2.234168 TGTTGTAAGCTATGTGGCCGTA 59.766 45.455 0.00 0.00 0.00 4.02
2636 2687 1.002659 TGTTGTAAGCTATGTGGCCGT 59.997 47.619 0.00 0.00 0.00 5.68
2637 2688 1.732941 TGTTGTAAGCTATGTGGCCG 58.267 50.000 0.00 0.00 0.00 6.13
2638 2689 4.022329 AGTTTTGTTGTAAGCTATGTGGCC 60.022 41.667 0.00 0.00 0.00 5.36
2639 2690 5.121221 AGTTTTGTTGTAAGCTATGTGGC 57.879 39.130 0.00 0.00 0.00 5.01
2640 2691 6.734137 TCAAGTTTTGTTGTAAGCTATGTGG 58.266 36.000 0.00 0.00 0.00 4.17
2641 2692 8.627487 TTTCAAGTTTTGTTGTAAGCTATGTG 57.373 30.769 0.00 0.00 0.00 3.21
2646 2697 9.301153 CTTGTATTTCAAGTTTTGTTGTAAGCT 57.699 29.630 0.00 0.00 45.89 3.74
2668 2719 8.918202 TTTGGTGTTCTTATGTTCTATCTTGT 57.082 30.769 0.00 0.00 0.00 3.16
2675 2726 8.504005 CGAGTTATTTTGGTGTTCTTATGTTCT 58.496 33.333 0.00 0.00 0.00 3.01
2676 2727 7.749126 CCGAGTTATTTTGGTGTTCTTATGTTC 59.251 37.037 0.00 0.00 0.00 3.18
2677 2728 7.229907 ACCGAGTTATTTTGGTGTTCTTATGTT 59.770 33.333 0.00 0.00 33.43 2.71
2678 2729 6.713450 ACCGAGTTATTTTGGTGTTCTTATGT 59.287 34.615 0.00 0.00 33.43 2.29
2679 2730 7.141100 ACCGAGTTATTTTGGTGTTCTTATG 57.859 36.000 0.00 0.00 33.43 1.90
2680 2731 8.316214 TCTACCGAGTTATTTTGGTGTTCTTAT 58.684 33.333 0.00 0.00 35.57 1.73
2681 2732 7.669427 TCTACCGAGTTATTTTGGTGTTCTTA 58.331 34.615 0.00 0.00 35.57 2.10
2682 2733 6.527423 TCTACCGAGTTATTTTGGTGTTCTT 58.473 36.000 0.00 0.00 35.57 2.52
2683 2734 6.105397 TCTACCGAGTTATTTTGGTGTTCT 57.895 37.500 0.00 0.00 35.57 3.01
2684 2735 6.790285 TTCTACCGAGTTATTTTGGTGTTC 57.210 37.500 0.00 0.00 35.57 3.18
2685 2736 7.571080 TTTTCTACCGAGTTATTTTGGTGTT 57.429 32.000 0.00 0.00 35.57 3.32
2686 2737 7.571080 TTTTTCTACCGAGTTATTTTGGTGT 57.429 32.000 0.00 0.00 35.57 4.16
2689 2740 9.233232 GCATATTTTTCTACCGAGTTATTTTGG 57.767 33.333 0.00 0.00 0.00 3.28
2690 2741 9.233232 GGCATATTTTTCTACCGAGTTATTTTG 57.767 33.333 0.00 0.00 0.00 2.44
2691 2742 9.185680 AGGCATATTTTTCTACCGAGTTATTTT 57.814 29.630 0.00 0.00 0.00 1.82
2692 2743 8.621286 CAGGCATATTTTTCTACCGAGTTATTT 58.379 33.333 0.00 0.00 0.00 1.40
2693 2744 7.228706 CCAGGCATATTTTTCTACCGAGTTATT 59.771 37.037 0.00 0.00 0.00 1.40
2694 2745 6.710744 CCAGGCATATTTTTCTACCGAGTTAT 59.289 38.462 0.00 0.00 0.00 1.89
2695 2746 6.053005 CCAGGCATATTTTTCTACCGAGTTA 58.947 40.000 0.00 0.00 0.00 2.24
2696 2747 4.881850 CCAGGCATATTTTTCTACCGAGTT 59.118 41.667 0.00 0.00 0.00 3.01
2697 2748 4.163458 TCCAGGCATATTTTTCTACCGAGT 59.837 41.667 0.00 0.00 0.00 4.18
2698 2749 4.703897 TCCAGGCATATTTTTCTACCGAG 58.296 43.478 0.00 0.00 0.00 4.63
2699 2750 4.703897 CTCCAGGCATATTTTTCTACCGA 58.296 43.478 0.00 0.00 0.00 4.69
2700 2751 3.251004 GCTCCAGGCATATTTTTCTACCG 59.749 47.826 0.00 0.00 41.35 4.02
2701 2752 4.837896 GCTCCAGGCATATTTTTCTACC 57.162 45.455 0.00 0.00 41.35 3.18
2714 2765 2.531522 ATGTTGTTTTTGCTCCAGGC 57.468 45.000 0.00 0.00 42.22 4.85
2715 2766 7.378181 AGTATTTATGTTGTTTTTGCTCCAGG 58.622 34.615 0.00 0.00 0.00 4.45
2716 2767 8.299570 AGAGTATTTATGTTGTTTTTGCTCCAG 58.700 33.333 0.00 0.00 0.00 3.86
2717 2768 8.177119 AGAGTATTTATGTTGTTTTTGCTCCA 57.823 30.769 0.00 0.00 0.00 3.86
2718 2769 9.556030 GTAGAGTATTTATGTTGTTTTTGCTCC 57.444 33.333 0.00 0.00 0.00 4.70
2739 2790 9.784680 CCAAATCATTCTTTGAAATCTGTAGAG 57.215 33.333 0.00 0.00 38.17 2.43
2740 2791 9.300681 ACCAAATCATTCTTTGAAATCTGTAGA 57.699 29.630 0.00 0.00 38.17 2.59
2741 2792 9.350357 CACCAAATCATTCTTTGAAATCTGTAG 57.650 33.333 0.00 0.00 38.17 2.74
2742 2793 9.076781 TCACCAAATCATTCTTTGAAATCTGTA 57.923 29.630 0.00 0.00 38.17 2.74
2743 2794 7.954835 TCACCAAATCATTCTTTGAAATCTGT 58.045 30.769 0.00 0.00 38.17 3.41
2744 2795 8.821147 TTCACCAAATCATTCTTTGAAATCTG 57.179 30.769 0.00 0.00 38.17 2.90
2745 2796 8.645110 ACTTCACCAAATCATTCTTTGAAATCT 58.355 29.630 0.00 0.00 38.17 2.40
2746 2797 8.822652 ACTTCACCAAATCATTCTTTGAAATC 57.177 30.769 0.00 0.00 38.17 2.17
2747 2798 9.264719 GAACTTCACCAAATCATTCTTTGAAAT 57.735 29.630 0.00 0.00 38.17 2.17
2748 2799 7.710475 GGAACTTCACCAAATCATTCTTTGAAA 59.290 33.333 0.00 0.00 38.17 2.69
2749 2800 7.069826 AGGAACTTCACCAAATCATTCTTTGAA 59.930 33.333 0.00 0.00 34.69 2.69
2750 2801 6.550854 AGGAACTTCACCAAATCATTCTTTGA 59.449 34.615 0.00 0.00 34.69 2.69
2751 2802 6.752168 AGGAACTTCACCAAATCATTCTTTG 58.248 36.000 0.00 0.00 27.25 2.77
2752 2803 6.983906 AGGAACTTCACCAAATCATTCTTT 57.016 33.333 0.00 0.00 27.25 2.52
2753 2804 9.927081 ATATAGGAACTTCACCAAATCATTCTT 57.073 29.630 0.00 0.00 41.75 2.52
2754 2805 9.927081 AATATAGGAACTTCACCAAATCATTCT 57.073 29.630 0.00 0.00 41.75 2.40
2757 2808 9.699410 TGAAATATAGGAACTTCACCAAATCAT 57.301 29.630 0.00 0.00 41.75 2.45
2758 2809 9.527157 TTGAAATATAGGAACTTCACCAAATCA 57.473 29.630 0.00 0.00 41.75 2.57
2761 2812 8.293867 CGTTTGAAATATAGGAACTTCACCAAA 58.706 33.333 0.00 0.00 41.75 3.28
2762 2813 7.094549 CCGTTTGAAATATAGGAACTTCACCAA 60.095 37.037 0.00 0.00 41.75 3.67
2763 2814 6.373216 CCGTTTGAAATATAGGAACTTCACCA 59.627 38.462 0.00 0.00 41.75 4.17
2764 2815 6.183360 CCCGTTTGAAATATAGGAACTTCACC 60.183 42.308 0.00 0.00 41.75 4.02
2765 2816 6.183360 CCCCGTTTGAAATATAGGAACTTCAC 60.183 42.308 0.00 0.00 41.75 3.18
2766 2817 5.883673 CCCCGTTTGAAATATAGGAACTTCA 59.116 40.000 0.00 0.00 41.75 3.02
2767 2818 5.884232 ACCCCGTTTGAAATATAGGAACTTC 59.116 40.000 0.00 0.00 41.75 3.01
2768 2819 5.823312 ACCCCGTTTGAAATATAGGAACTT 58.177 37.500 0.00 0.00 41.75 2.66
2769 2820 5.191124 AGACCCCGTTTGAAATATAGGAACT 59.809 40.000 0.00 0.00 46.37 3.01
2770 2821 5.434408 AGACCCCGTTTGAAATATAGGAAC 58.566 41.667 0.00 0.00 0.00 3.62
2771 2822 5.703730 AGACCCCGTTTGAAATATAGGAA 57.296 39.130 0.00 0.00 0.00 3.36
2772 2823 5.901276 ACTAGACCCCGTTTGAAATATAGGA 59.099 40.000 0.00 0.00 0.00 2.94
2773 2824 6.041751 AGACTAGACCCCGTTTGAAATATAGG 59.958 42.308 0.00 0.00 0.00 2.57
2774 2825 7.052142 AGACTAGACCCCGTTTGAAATATAG 57.948 40.000 0.00 0.00 0.00 1.31
2775 2826 8.537728 TTAGACTAGACCCCGTTTGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
2776 2827 5.952347 AGACTAGACCCCGTTTGAAATAT 57.048 39.130 0.00 0.00 0.00 1.28
2777 2828 6.855763 TTAGACTAGACCCCGTTTGAAATA 57.144 37.500 0.00 0.00 0.00 1.40
2778 2829 5.750352 TTAGACTAGACCCCGTTTGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
2779 2830 5.549742 TTTAGACTAGACCCCGTTTGAAA 57.450 39.130 0.00 0.00 0.00 2.69
2780 2831 5.549742 TTTTAGACTAGACCCCGTTTGAA 57.450 39.130 0.00 0.00 0.00 2.69
2781 2832 5.070847 ACTTTTTAGACTAGACCCCGTTTGA 59.929 40.000 0.00 0.00 0.00 2.69
2782 2833 5.303165 ACTTTTTAGACTAGACCCCGTTTG 58.697 41.667 0.00 0.00 0.00 2.93
2783 2834 5.557576 ACTTTTTAGACTAGACCCCGTTT 57.442 39.130 0.00 0.00 0.00 3.60
2784 2835 6.670695 TTACTTTTTAGACTAGACCCCGTT 57.329 37.500 0.00 0.00 0.00 4.44
2785 2836 6.670695 TTTACTTTTTAGACTAGACCCCGT 57.329 37.500 0.00 0.00 0.00 5.28
2786 2837 8.557592 AATTTTACTTTTTAGACTAGACCCCG 57.442 34.615 0.00 0.00 0.00 5.73
2806 2857 7.885399 GCCATCCTATGTGATAGTCCTAATTTT 59.115 37.037 0.00 0.00 0.00 1.82
2807 2858 7.398024 GCCATCCTATGTGATAGTCCTAATTT 58.602 38.462 0.00 0.00 0.00 1.82
2808 2859 6.069963 GGCCATCCTATGTGATAGTCCTAATT 60.070 42.308 0.00 0.00 0.00 1.40
2809 2860 5.426833 GGCCATCCTATGTGATAGTCCTAAT 59.573 44.000 0.00 0.00 0.00 1.73
2810 2861 4.777896 GGCCATCCTATGTGATAGTCCTAA 59.222 45.833 0.00 0.00 0.00 2.69
2811 2862 4.202781 TGGCCATCCTATGTGATAGTCCTA 60.203 45.833 0.00 0.00 0.00 2.94
2812 2863 3.177228 GGCCATCCTATGTGATAGTCCT 58.823 50.000 0.00 0.00 0.00 3.85
2813 2864 2.906389 TGGCCATCCTATGTGATAGTCC 59.094 50.000 0.00 0.00 0.00 3.85
2814 2865 3.580458 AGTGGCCATCCTATGTGATAGTC 59.420 47.826 9.72 0.00 0.00 2.59
2815 2866 3.580458 GAGTGGCCATCCTATGTGATAGT 59.420 47.826 9.72 0.00 0.00 2.12
2816 2867 3.580022 TGAGTGGCCATCCTATGTGATAG 59.420 47.826 9.72 0.00 0.00 2.08
2817 2868 3.586429 TGAGTGGCCATCCTATGTGATA 58.414 45.455 9.72 0.00 0.00 2.15
2818 2869 2.411583 TGAGTGGCCATCCTATGTGAT 58.588 47.619 9.72 0.00 0.00 3.06
2819 2870 1.878211 TGAGTGGCCATCCTATGTGA 58.122 50.000 9.72 0.00 0.00 3.58
2820 2871 2.945080 ATGAGTGGCCATCCTATGTG 57.055 50.000 9.72 0.00 0.00 3.21
2821 2872 2.300152 CGTATGAGTGGCCATCCTATGT 59.700 50.000 9.72 0.00 0.00 2.29
2822 2873 2.562738 TCGTATGAGTGGCCATCCTATG 59.437 50.000 9.72 10.35 0.00 2.23
2823 2874 2.889512 TCGTATGAGTGGCCATCCTAT 58.110 47.619 9.72 4.26 0.00 2.57
2824 2875 2.375014 TCGTATGAGTGGCCATCCTA 57.625 50.000 9.72 2.48 0.00 2.94
2825 2876 1.414181 CTTCGTATGAGTGGCCATCCT 59.586 52.381 9.72 0.65 0.00 3.24
2826 2877 1.412710 TCTTCGTATGAGTGGCCATCC 59.587 52.381 9.72 4.26 0.00 3.51
2827 2878 2.866762 GTTCTTCGTATGAGTGGCCATC 59.133 50.000 9.72 8.54 0.00 3.51
2828 2879 2.420129 GGTTCTTCGTATGAGTGGCCAT 60.420 50.000 9.72 0.00 0.00 4.40
2829 2880 1.066430 GGTTCTTCGTATGAGTGGCCA 60.066 52.381 0.00 0.00 0.00 5.36
2830 2881 1.066430 TGGTTCTTCGTATGAGTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
2831 2882 2.380084 TGGTTCTTCGTATGAGTGGC 57.620 50.000 0.00 0.00 0.00 5.01
2832 2883 4.188247 TCTTGGTTCTTCGTATGAGTGG 57.812 45.455 0.00 0.00 0.00 4.00
2833 2884 6.539649 TTTTCTTGGTTCTTCGTATGAGTG 57.460 37.500 0.00 0.00 0.00 3.51
2834 2885 8.095169 AGTATTTTCTTGGTTCTTCGTATGAGT 58.905 33.333 0.00 0.00 0.00 3.41
2835 2886 8.383619 CAGTATTTTCTTGGTTCTTCGTATGAG 58.616 37.037 0.00 0.00 0.00 2.90
2836 2887 8.092068 TCAGTATTTTCTTGGTTCTTCGTATGA 58.908 33.333 0.00 0.00 0.00 2.15
2837 2888 8.169268 GTCAGTATTTTCTTGGTTCTTCGTATG 58.831 37.037 0.00 0.00 0.00 2.39
2838 2889 8.095169 AGTCAGTATTTTCTTGGTTCTTCGTAT 58.905 33.333 0.00 0.00 0.00 3.06
2839 2890 7.439381 AGTCAGTATTTTCTTGGTTCTTCGTA 58.561 34.615 0.00 0.00 0.00 3.43
2840 2891 6.289064 AGTCAGTATTTTCTTGGTTCTTCGT 58.711 36.000 0.00 0.00 0.00 3.85
2841 2892 6.787085 AGTCAGTATTTTCTTGGTTCTTCG 57.213 37.500 0.00 0.00 0.00 3.79
2862 2913 9.830975 GGGCCACAATTCATTTATATTAAAAGT 57.169 29.630 4.39 0.00 0.00 2.66
2864 2915 9.829507 CAGGGCCACAATTCATTTATATTAAAA 57.170 29.630 6.18 0.00 0.00 1.52
2865 2916 9.206690 TCAGGGCCACAATTCATTTATATTAAA 57.793 29.630 6.18 0.00 0.00 1.52
2866 2917 8.774546 TCAGGGCCACAATTCATTTATATTAA 57.225 30.769 6.18 0.00 0.00 1.40
2867 2918 8.954834 ATCAGGGCCACAATTCATTTATATTA 57.045 30.769 6.18 0.00 0.00 0.98
2868 2919 7.860649 ATCAGGGCCACAATTCATTTATATT 57.139 32.000 6.18 0.00 0.00 1.28
2869 2920 8.974238 CATATCAGGGCCACAATTCATTTATAT 58.026 33.333 6.18 0.00 0.00 0.86
2870 2921 8.169393 TCATATCAGGGCCACAATTCATTTATA 58.831 33.333 6.18 0.00 0.00 0.98
2871 2922 7.011994 TCATATCAGGGCCACAATTCATTTAT 58.988 34.615 6.18 0.00 0.00 1.40
2872 2923 6.372104 TCATATCAGGGCCACAATTCATTTA 58.628 36.000 6.18 0.00 0.00 1.40
2873 2924 5.210430 TCATATCAGGGCCACAATTCATTT 58.790 37.500 6.18 0.00 0.00 2.32
2874 2925 4.806892 TCATATCAGGGCCACAATTCATT 58.193 39.130 6.18 0.00 0.00 2.57
2875 2926 4.458256 TCATATCAGGGCCACAATTCAT 57.542 40.909 6.18 0.00 0.00 2.57
2876 2927 3.949586 TCATATCAGGGCCACAATTCA 57.050 42.857 6.18 0.00 0.00 2.57
2877 2928 5.130292 CAATCATATCAGGGCCACAATTC 57.870 43.478 6.18 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.