Multiple sequence alignment - TraesCS2B01G137800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G137800 chr2B 100.000 5659 0 0 1 5659 104812144 104817802 0.000000e+00 10451.0
1 TraesCS2B01G137800 chr2B 98.125 160 3 0 4 163 110646927 110646768 4.320000e-71 279.0
2 TraesCS2B01G137800 chr2B 97.297 37 0 1 5285 5321 104817395 104817430 1.700000e-05 62.1
3 TraesCS2B01G137800 chr2B 97.297 37 0 1 5252 5287 104817428 104817464 1.700000e-05 62.1
4 TraesCS2B01G137800 chr2D 94.043 2988 138 21 1709 4692 66763908 66760957 0.000000e+00 4495.0
5 TraesCS2B01G137800 chr2D 90.874 1282 67 20 476 1732 66765211 66763955 0.000000e+00 1674.0
6 TraesCS2B01G137800 chr2D 95.748 588 23 2 4698 5284 66760897 66760311 0.000000e+00 946.0
7 TraesCS2B01G137800 chr2D 94.987 379 12 5 5285 5659 66760343 66759968 6.320000e-164 588.0
8 TraesCS2B01G137800 chr2A 93.393 2785 91 31 507 3252 68246278 68249008 0.000000e+00 4037.0
9 TraesCS2B01G137800 chr2A 96.473 1446 47 2 3251 4692 68249091 68250536 0.000000e+00 2385.0
10 TraesCS2B01G137800 chr2A 95.918 588 19 5 4698 5282 68250591 68251176 0.000000e+00 948.0
11 TraesCS2B01G137800 chr2A 97.347 377 6 2 5285 5659 68251146 68251520 6.180000e-179 638.0
12 TraesCS2B01G137800 chr3B 98.758 161 2 0 3 163 796326218 796326058 2.580000e-73 287.0
13 TraesCS2B01G137800 chr3B 98.758 161 2 0 3 163 796326762 796326922 2.580000e-73 287.0
14 TraesCS2B01G137800 chr3B 88.889 126 13 1 348 472 401232947 401233072 2.730000e-33 154.0
15 TraesCS2B01G137800 chr6B 97.546 163 4 0 1 163 450073091 450073253 4.320000e-71 279.0
16 TraesCS2B01G137800 chr6B 88.034 117 13 1 348 463 487215120 487215236 2.750000e-28 137.0
17 TraesCS2B01G137800 chr6B 94.444 54 2 1 3296 3349 435589741 435589689 1.310000e-11 82.4
18 TraesCS2B01G137800 chr6B 85.714 77 8 2 3295 3371 157604795 157604868 1.690000e-10 78.7
19 TraesCS2B01G137800 chr5D 95.808 167 2 1 2 163 512414064 512414230 1.210000e-66 265.0
20 TraesCS2B01G137800 chr5D 95.783 166 2 1 3 163 6271184 6271019 4.350000e-66 263.0
21 TraesCS2B01G137800 chr5D 95.238 168 3 1 1 163 503296695 503296862 1.560000e-65 261.0
22 TraesCS2B01G137800 chr1D 95.808 167 2 1 2 163 491423600 491423434 1.210000e-66 265.0
23 TraesCS2B01G137800 chr1D 95.758 165 2 1 4 163 254439832 254439996 1.560000e-65 261.0
24 TraesCS2B01G137800 chr1D 92.593 54 3 1 3295 3348 460863731 460863679 6.080000e-10 76.8
25 TraesCS2B01G137800 chr5B 88.889 117 12 1 348 463 693980377 693980493 5.910000e-30 143.0
26 TraesCS2B01G137800 chr3A 88.136 118 13 1 348 464 31817489 31817606 7.650000e-29 139.0
27 TraesCS2B01G137800 chr7B 86.777 121 13 3 345 463 194738936 194739055 1.280000e-26 132.0
28 TraesCS2B01G137800 chr7B 84.328 134 17 4 332 463 650792152 650792021 1.650000e-25 128.0
29 TraesCS2B01G137800 chr1B 86.555 119 15 1 346 463 162803544 162803662 4.600000e-26 130.0
30 TraesCS2B01G137800 chr1B 85.833 120 16 1 348 466 180409777 180409658 5.950000e-25 126.0
31 TraesCS2B01G137800 chr3D 85.484 124 17 1 347 469 594820 594697 1.650000e-25 128.0
32 TraesCS2B01G137800 chr7A 92.593 54 3 1 3296 3349 307110550 307110498 6.080000e-10 76.8
33 TraesCS2B01G137800 chr6A 92.453 53 4 0 3295 3347 99203754 99203806 6.080000e-10 76.8
34 TraesCS2B01G137800 chr4D 92.453 53 3 1 3297 3349 84990040 84990091 2.190000e-09 75.0
35 TraesCS2B01G137800 chr4B 83.333 78 12 1 3295 3372 163800342 163800418 2.830000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G137800 chr2B 104812144 104817802 5658 False 3525.066667 10451 98.19800 1 5659 3 chr2B.!!$F1 5658
1 TraesCS2B01G137800 chr2D 66759968 66765211 5243 True 1925.750000 4495 93.91300 476 5659 4 chr2D.!!$R1 5183
2 TraesCS2B01G137800 chr2A 68246278 68251520 5242 False 2002.000000 4037 95.78275 507 5659 4 chr2A.!!$F1 5152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 365 0.702902 ACTACTCCCTCCGTCCAGAA 59.297 55.0 0.00 0.0 0.00 3.02 F
1122 1131 0.317160 ACGTCCGCATCTTGACTTGA 59.683 50.0 0.00 0.0 0.00 3.02 F
1929 2040 0.036010 GCTTGTCCTTCTGGCTGCTA 60.036 55.0 0.00 0.0 0.00 3.49 F
3569 3779 0.250901 TCCCCTCAACAAGAGCTTGC 60.251 55.0 9.99 0.0 44.03 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1399 1418 0.971386 TTCGCTTAGTCCCCGTTTCT 59.029 50.000 0.00 0.0 0.0 2.52 R
2797 2917 1.340405 ACCTGTCCATTCTCCATGTGC 60.340 52.381 0.00 0.0 0.0 4.57 R
3674 3884 2.192861 CAAACCCTTCGCTGCACCA 61.193 57.895 0.00 0.0 0.0 4.17 R
4701 4965 0.324943 GCAGAGGGCTGGTCTGTAAA 59.675 55.000 11.78 0.0 43.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.612879 TTTCTAATCCATATCTCTCTCATTCCT 57.387 33.333 0.00 0.00 0.00 3.36
34 35 9.612879 TTCTAATCCATATCTCTCTCATTCCTT 57.387 33.333 0.00 0.00 0.00 3.36
35 36 9.612879 TCTAATCCATATCTCTCTCATTCCTTT 57.387 33.333 0.00 0.00 0.00 3.11
36 37 9.874205 CTAATCCATATCTCTCTCATTCCTTTC 57.126 37.037 0.00 0.00 0.00 2.62
37 38 8.508969 AATCCATATCTCTCTCATTCCTTTCT 57.491 34.615 0.00 0.00 0.00 2.52
38 39 7.927683 TCCATATCTCTCTCATTCCTTTCTT 57.072 36.000 0.00 0.00 0.00 2.52
39 40 9.612879 ATCCATATCTCTCTCATTCCTTTCTTA 57.387 33.333 0.00 0.00 0.00 2.10
40 41 8.865090 TCCATATCTCTCTCATTCCTTTCTTAC 58.135 37.037 0.00 0.00 0.00 2.34
41 42 8.646004 CCATATCTCTCTCATTCCTTTCTTACA 58.354 37.037 0.00 0.00 0.00 2.41
44 45 8.785329 ATCTCTCTCATTCCTTTCTTACAAAC 57.215 34.615 0.00 0.00 0.00 2.93
45 46 7.735917 TCTCTCTCATTCCTTTCTTACAAACA 58.264 34.615 0.00 0.00 0.00 2.83
46 47 8.210946 TCTCTCTCATTCCTTTCTTACAAACAA 58.789 33.333 0.00 0.00 0.00 2.83
47 48 8.746052 TCTCTCATTCCTTTCTTACAAACAAA 57.254 30.769 0.00 0.00 0.00 2.83
48 49 9.184523 TCTCTCATTCCTTTCTTACAAACAAAA 57.815 29.630 0.00 0.00 0.00 2.44
49 50 9.455847 CTCTCATTCCTTTCTTACAAACAAAAG 57.544 33.333 0.00 0.00 0.00 2.27
50 51 9.184523 TCTCATTCCTTTCTTACAAACAAAAGA 57.815 29.630 0.00 0.00 31.81 2.52
51 52 9.455847 CTCATTCCTTTCTTACAAACAAAAGAG 57.544 33.333 0.00 0.00 33.49 2.85
52 53 8.966868 TCATTCCTTTCTTACAAACAAAAGAGT 58.033 29.630 0.00 0.00 33.49 3.24
53 54 9.586435 CATTCCTTTCTTACAAACAAAAGAGTT 57.414 29.630 0.00 0.00 33.49 3.01
55 56 9.990360 TTCCTTTCTTACAAACAAAAGAGTTTT 57.010 25.926 0.00 0.00 39.55 2.43
56 57 9.990360 TCCTTTCTTACAAACAAAAGAGTTTTT 57.010 25.926 0.00 0.00 39.55 1.94
68 69 8.648557 ACAAAAGAGTTTTTCTTATTGAAGGC 57.351 30.769 13.53 0.00 45.41 4.35
69 70 8.478066 ACAAAAGAGTTTTTCTTATTGAAGGCT 58.522 29.630 13.53 0.00 45.41 4.58
70 71 8.758715 CAAAAGAGTTTTTCTTATTGAAGGCTG 58.241 33.333 0.00 0.00 45.41 4.85
71 72 6.581171 AGAGTTTTTCTTATTGAAGGCTGG 57.419 37.500 0.00 0.00 35.89 4.85
72 73 6.306987 AGAGTTTTTCTTATTGAAGGCTGGA 58.693 36.000 0.00 0.00 35.89 3.86
73 74 6.950619 AGAGTTTTTCTTATTGAAGGCTGGAT 59.049 34.615 0.00 0.00 35.89 3.41
74 75 7.452813 AGAGTTTTTCTTATTGAAGGCTGGATT 59.547 33.333 0.00 0.00 35.89 3.01
75 76 8.650143 AGTTTTTCTTATTGAAGGCTGGATTA 57.350 30.769 0.00 0.00 35.89 1.75
76 77 9.259832 AGTTTTTCTTATTGAAGGCTGGATTAT 57.740 29.630 0.00 0.00 35.89 1.28
77 78 9.875691 GTTTTTCTTATTGAAGGCTGGATTATT 57.124 29.630 0.00 0.00 35.89 1.40
81 82 9.520515 TTCTTATTGAAGGCTGGATTATTATCC 57.479 33.333 3.68 3.68 40.76 2.59
82 83 8.668653 TCTTATTGAAGGCTGGATTATTATCCA 58.331 33.333 12.69 12.69 43.94 3.41
125 126 9.727859 ATCACGACATACTAGTTATATCACTCT 57.272 33.333 0.00 0.00 0.00 3.24
126 127 9.205719 TCACGACATACTAGTTATATCACTCTC 57.794 37.037 0.00 0.00 0.00 3.20
127 128 8.989980 CACGACATACTAGTTATATCACTCTCA 58.010 37.037 0.00 0.00 0.00 3.27
128 129 8.991026 ACGACATACTAGTTATATCACTCTCAC 58.009 37.037 0.00 0.00 0.00 3.51
129 130 9.210329 CGACATACTAGTTATATCACTCTCACT 57.790 37.037 0.00 0.00 0.00 3.41
135 136 9.962809 ACTAGTTATATCACTCTCACTATACCC 57.037 37.037 0.00 0.00 0.00 3.69
136 137 9.961264 CTAGTTATATCACTCTCACTATACCCA 57.039 37.037 0.00 0.00 0.00 4.51
137 138 8.638629 AGTTATATCACTCTCACTATACCCAC 57.361 38.462 0.00 0.00 0.00 4.61
138 139 7.390996 AGTTATATCACTCTCACTATACCCACG 59.609 40.741 0.00 0.00 0.00 4.94
139 140 3.361281 TCACTCTCACTATACCCACGT 57.639 47.619 0.00 0.00 0.00 4.49
140 141 4.492494 TCACTCTCACTATACCCACGTA 57.508 45.455 0.00 0.00 0.00 3.57
141 142 5.045012 TCACTCTCACTATACCCACGTAT 57.955 43.478 0.00 0.00 38.72 3.06
142 143 6.178607 TCACTCTCACTATACCCACGTATA 57.821 41.667 0.00 0.00 36.55 1.47
143 144 6.594744 TCACTCTCACTATACCCACGTATAA 58.405 40.000 0.00 0.00 37.06 0.98
144 145 7.229308 TCACTCTCACTATACCCACGTATAAT 58.771 38.462 0.00 0.00 37.06 1.28
145 146 8.377799 TCACTCTCACTATACCCACGTATAATA 58.622 37.037 0.00 0.00 37.06 0.98
146 147 9.175312 CACTCTCACTATACCCACGTATAATAT 57.825 37.037 0.00 0.00 37.06 1.28
147 148 9.175312 ACTCTCACTATACCCACGTATAATATG 57.825 37.037 0.00 0.00 37.06 1.78
148 149 9.175312 CTCTCACTATACCCACGTATAATATGT 57.825 37.037 0.00 0.00 37.06 2.29
149 150 8.953313 TCTCACTATACCCACGTATAATATGTG 58.047 37.037 0.00 0.00 43.59 3.21
168 169 9.830186 AATATGTGGGTATGTAGAATACTCTCT 57.170 33.333 0.00 0.00 43.54 3.10
169 170 9.830186 ATATGTGGGTATGTAGAATACTCTCTT 57.170 33.333 0.00 0.00 43.54 2.85
170 171 7.584122 TGTGGGTATGTAGAATACTCTCTTC 57.416 40.000 0.00 0.00 43.54 2.87
171 172 7.123383 TGTGGGTATGTAGAATACTCTCTTCA 58.877 38.462 0.00 0.00 43.54 3.02
172 173 7.785028 TGTGGGTATGTAGAATACTCTCTTCAT 59.215 37.037 0.00 0.00 43.54 2.57
173 174 8.643324 GTGGGTATGTAGAATACTCTCTTCATT 58.357 37.037 0.00 0.00 43.54 2.57
174 175 8.861086 TGGGTATGTAGAATACTCTCTTCATTC 58.139 37.037 0.00 0.00 43.54 2.67
175 176 8.861086 GGGTATGTAGAATACTCTCTTCATTCA 58.139 37.037 0.00 0.00 43.54 2.57
229 230 8.297426 TGGACTATATACAGTCTGAAATAAGCG 58.703 37.037 10.87 1.02 43.73 4.68
230 231 8.512956 GGACTATATACAGTCTGAAATAAGCGA 58.487 37.037 10.87 0.00 43.73 4.93
231 232 9.894783 GACTATATACAGTCTGAAATAAGCGAA 57.105 33.333 6.91 0.00 41.49 4.70
232 233 9.680315 ACTATATACAGTCTGAAATAAGCGAAC 57.320 33.333 6.91 0.00 0.00 3.95
233 234 9.678941 CTATATACAGTCTGAAATAAGCGAACA 57.321 33.333 6.91 0.00 0.00 3.18
234 235 8.942338 ATATACAGTCTGAAATAAGCGAACAA 57.058 30.769 6.91 0.00 0.00 2.83
235 236 7.667043 ATACAGTCTGAAATAAGCGAACAAA 57.333 32.000 6.91 0.00 0.00 2.83
236 237 5.748592 ACAGTCTGAAATAAGCGAACAAAC 58.251 37.500 6.91 0.00 0.00 2.93
237 238 5.295787 ACAGTCTGAAATAAGCGAACAAACA 59.704 36.000 6.91 0.00 0.00 2.83
238 239 5.621228 CAGTCTGAAATAAGCGAACAAACAC 59.379 40.000 0.00 0.00 0.00 3.32
239 240 5.295787 AGTCTGAAATAAGCGAACAAACACA 59.704 36.000 0.00 0.00 0.00 3.72
240 241 6.017109 AGTCTGAAATAAGCGAACAAACACAT 60.017 34.615 0.00 0.00 0.00 3.21
241 242 6.636850 GTCTGAAATAAGCGAACAAACACATT 59.363 34.615 0.00 0.00 0.00 2.71
242 243 6.636447 TCTGAAATAAGCGAACAAACACATTG 59.364 34.615 0.00 0.00 44.95 2.82
243 244 6.499172 TGAAATAAGCGAACAAACACATTGA 58.501 32.000 0.00 0.00 41.85 2.57
244 245 6.975197 TGAAATAAGCGAACAAACACATTGAA 59.025 30.769 0.00 0.00 41.85 2.69
245 246 7.489435 TGAAATAAGCGAACAAACACATTGAAA 59.511 29.630 0.00 0.00 41.85 2.69
246 247 6.747659 ATAAGCGAACAAACACATTGAAAC 57.252 33.333 0.00 0.00 41.85 2.78
247 248 4.370364 AGCGAACAAACACATTGAAACT 57.630 36.364 0.00 0.00 41.85 2.66
248 249 4.743493 AGCGAACAAACACATTGAAACTT 58.257 34.783 0.00 0.00 41.85 2.66
249 250 4.562394 AGCGAACAAACACATTGAAACTTG 59.438 37.500 0.00 0.00 41.85 3.16
250 251 4.326009 GCGAACAAACACATTGAAACTTGT 59.674 37.500 0.00 0.00 41.85 3.16
251 252 5.498542 GCGAACAAACACATTGAAACTTGTC 60.499 40.000 0.00 0.00 41.85 3.18
252 253 5.799936 CGAACAAACACATTGAAACTTGTCT 59.200 36.000 0.00 0.00 41.85 3.41
253 254 6.964370 CGAACAAACACATTGAAACTTGTCTA 59.036 34.615 0.00 0.00 41.85 2.59
254 255 7.643764 CGAACAAACACATTGAAACTTGTCTAT 59.356 33.333 0.00 0.00 41.85 1.98
255 256 9.944663 GAACAAACACATTGAAACTTGTCTATA 57.055 29.630 0.00 0.00 41.85 1.31
303 304 8.525290 AAAGATCTTATATTTGTGAACCAGGG 57.475 34.615 8.75 0.00 0.00 4.45
304 305 7.451731 AGATCTTATATTTGTGAACCAGGGA 57.548 36.000 0.00 0.00 0.00 4.20
305 306 7.512992 AGATCTTATATTTGTGAACCAGGGAG 58.487 38.462 0.00 0.00 0.00 4.30
306 307 6.636454 TCTTATATTTGTGAACCAGGGAGT 57.364 37.500 0.00 0.00 0.00 3.85
307 308 7.743116 TCTTATATTTGTGAACCAGGGAGTA 57.257 36.000 0.00 0.00 0.00 2.59
308 309 8.331931 TCTTATATTTGTGAACCAGGGAGTAT 57.668 34.615 0.00 0.00 0.00 2.12
309 310 8.778059 TCTTATATTTGTGAACCAGGGAGTATT 58.222 33.333 0.00 0.00 0.00 1.89
310 311 9.408648 CTTATATTTGTGAACCAGGGAGTATTT 57.591 33.333 0.00 0.00 0.00 1.40
313 314 9.936329 ATATTTGTGAACCAGGGAGTATTTATT 57.064 29.630 0.00 0.00 0.00 1.40
314 315 8.664669 ATTTGTGAACCAGGGAGTATTTATTT 57.335 30.769 0.00 0.00 0.00 1.40
315 316 9.762381 ATTTGTGAACCAGGGAGTATTTATTTA 57.238 29.630 0.00 0.00 0.00 1.40
316 317 8.801882 TTGTGAACCAGGGAGTATTTATTTAG 57.198 34.615 0.00 0.00 0.00 1.85
317 318 7.924541 TGTGAACCAGGGAGTATTTATTTAGT 58.075 34.615 0.00 0.00 0.00 2.24
318 319 7.827236 TGTGAACCAGGGAGTATTTATTTAGTG 59.173 37.037 0.00 0.00 0.00 2.74
319 320 7.827729 GTGAACCAGGGAGTATTTATTTAGTGT 59.172 37.037 0.00 0.00 0.00 3.55
320 321 8.387813 TGAACCAGGGAGTATTTATTTAGTGTT 58.612 33.333 0.00 0.00 0.00 3.32
321 322 9.239551 GAACCAGGGAGTATTTATTTAGTGTTT 57.760 33.333 0.00 0.00 0.00 2.83
322 323 8.803397 ACCAGGGAGTATTTATTTAGTGTTTC 57.197 34.615 0.00 0.00 0.00 2.78
323 324 8.612145 ACCAGGGAGTATTTATTTAGTGTTTCT 58.388 33.333 0.00 0.00 0.00 2.52
354 355 9.544579 AAGACTATTTGTTAAGTACTACTCCCT 57.455 33.333 0.00 0.00 0.00 4.20
355 356 9.187996 AGACTATTTGTTAAGTACTACTCCCTC 57.812 37.037 0.00 0.00 0.00 4.30
356 357 8.303780 ACTATTTGTTAAGTACTACTCCCTCC 57.696 38.462 0.00 0.00 0.00 4.30
357 358 5.649782 TTTGTTAAGTACTACTCCCTCCG 57.350 43.478 0.00 0.00 0.00 4.63
358 359 4.307032 TGTTAAGTACTACTCCCTCCGT 57.693 45.455 0.00 0.00 0.00 4.69
359 360 4.265073 TGTTAAGTACTACTCCCTCCGTC 58.735 47.826 0.00 0.00 0.00 4.79
360 361 2.433662 AAGTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
361 362 1.293062 AGTACTACTCCCTCCGTCCA 58.707 55.000 0.00 0.00 0.00 4.02
362 363 1.212441 AGTACTACTCCCTCCGTCCAG 59.788 57.143 0.00 0.00 0.00 3.86
363 364 1.211457 GTACTACTCCCTCCGTCCAGA 59.789 57.143 0.00 0.00 0.00 3.86
364 365 0.702902 ACTACTCCCTCCGTCCAGAA 59.297 55.000 0.00 0.00 0.00 3.02
365 366 1.076677 ACTACTCCCTCCGTCCAGAAA 59.923 52.381 0.00 0.00 0.00 2.52
366 367 2.292323 ACTACTCCCTCCGTCCAGAAAT 60.292 50.000 0.00 0.00 0.00 2.17
367 368 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
368 369 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
369 370 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
370 371 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
371 372 3.958798 CTCCCTCCGTCCAGAAATACTTA 59.041 47.826 0.00 0.00 0.00 2.24
372 373 4.553678 TCCCTCCGTCCAGAAATACTTAT 58.446 43.478 0.00 0.00 0.00 1.73
373 374 4.587684 TCCCTCCGTCCAGAAATACTTATC 59.412 45.833 0.00 0.00 0.00 1.75
374 375 4.547532 CCTCCGTCCAGAAATACTTATCG 58.452 47.826 0.00 0.00 0.00 2.92
375 376 4.277672 CCTCCGTCCAGAAATACTTATCGA 59.722 45.833 0.00 0.00 0.00 3.59
376 377 5.434352 TCCGTCCAGAAATACTTATCGAG 57.566 43.478 0.00 0.00 0.00 4.04
377 378 4.277672 TCCGTCCAGAAATACTTATCGAGG 59.722 45.833 0.00 0.00 0.00 4.63
378 379 4.277672 CCGTCCAGAAATACTTATCGAGGA 59.722 45.833 0.00 0.00 0.00 3.71
379 380 5.221185 CCGTCCAGAAATACTTATCGAGGAA 60.221 44.000 0.00 0.00 0.00 3.36
380 381 6.270815 CGTCCAGAAATACTTATCGAGGAAA 58.729 40.000 0.00 0.00 0.00 3.13
381 382 6.924060 CGTCCAGAAATACTTATCGAGGAAAT 59.076 38.462 0.00 0.00 0.00 2.17
382 383 8.080417 CGTCCAGAAATACTTATCGAGGAAATA 58.920 37.037 0.00 0.00 0.00 1.40
383 384 9.413048 GTCCAGAAATACTTATCGAGGAAATAG 57.587 37.037 0.00 0.00 0.00 1.73
384 385 9.363401 TCCAGAAATACTTATCGAGGAAATAGA 57.637 33.333 0.00 0.00 0.00 1.98
436 437 9.698309 ATACGTCTAGATACATCCATCTTTTTG 57.302 33.333 0.00 0.00 36.63 2.44
437 438 7.782049 ACGTCTAGATACATCCATCTTTTTGA 58.218 34.615 0.00 0.00 36.63 2.69
438 439 7.707035 ACGTCTAGATACATCCATCTTTTTGAC 59.293 37.037 0.00 0.00 36.63 3.18
439 440 7.706607 CGTCTAGATACATCCATCTTTTTGACA 59.293 37.037 0.00 0.00 36.63 3.58
440 441 9.383519 GTCTAGATACATCCATCTTTTTGACAA 57.616 33.333 0.00 0.00 36.63 3.18
441 442 9.605275 TCTAGATACATCCATCTTTTTGACAAG 57.395 33.333 0.00 0.00 36.63 3.16
442 443 9.388506 CTAGATACATCCATCTTTTTGACAAGT 57.611 33.333 0.00 0.00 36.63 3.16
444 445 9.911788 AGATACATCCATCTTTTTGACAAGTAT 57.088 29.630 0.00 0.00 30.93 2.12
448 449 9.082313 ACATCCATCTTTTTGACAAGTATTTCT 57.918 29.630 0.00 0.00 0.00 2.52
449 450 9.350357 CATCCATCTTTTTGACAAGTATTTCTG 57.650 33.333 0.00 0.00 0.00 3.02
450 451 7.885297 TCCATCTTTTTGACAAGTATTTCTGG 58.115 34.615 0.00 0.00 0.00 3.86
451 452 7.723616 TCCATCTTTTTGACAAGTATTTCTGGA 59.276 33.333 0.00 0.00 0.00 3.86
452 453 7.809806 CCATCTTTTTGACAAGTATTTCTGGAC 59.190 37.037 0.00 0.00 0.00 4.02
453 454 6.954944 TCTTTTTGACAAGTATTTCTGGACG 58.045 36.000 0.00 0.00 0.00 4.79
454 455 5.682943 TTTTGACAAGTATTTCTGGACGG 57.317 39.130 0.00 0.00 0.00 4.79
455 456 4.610605 TTGACAAGTATTTCTGGACGGA 57.389 40.909 0.00 0.00 0.00 4.69
456 457 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
457 458 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
458 459 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
459 460 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
460 461 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
461 462 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
462 463 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
463 464 2.544844 TTTCTGGACGGAGGGAGTAT 57.455 50.000 0.00 0.00 0.00 2.12
464 465 2.544844 TTCTGGACGGAGGGAGTATT 57.455 50.000 0.00 0.00 0.00 1.89
465 466 2.544844 TCTGGACGGAGGGAGTATTT 57.455 50.000 0.00 0.00 0.00 1.40
466 467 2.829023 TCTGGACGGAGGGAGTATTTT 58.171 47.619 0.00 0.00 0.00 1.82
467 468 3.985127 TCTGGACGGAGGGAGTATTTTA 58.015 45.455 0.00 0.00 0.00 1.52
468 469 4.553678 TCTGGACGGAGGGAGTATTTTAT 58.446 43.478 0.00 0.00 0.00 1.40
469 470 4.966805 TCTGGACGGAGGGAGTATTTTATT 59.033 41.667 0.00 0.00 0.00 1.40
470 471 6.138263 TCTGGACGGAGGGAGTATTTTATTA 58.862 40.000 0.00 0.00 0.00 0.98
471 472 6.785963 TCTGGACGGAGGGAGTATTTTATTAT 59.214 38.462 0.00 0.00 0.00 1.28
472 473 7.951806 TCTGGACGGAGGGAGTATTTTATTATA 59.048 37.037 0.00 0.00 0.00 0.98
473 474 7.899973 TGGACGGAGGGAGTATTTTATTATAC 58.100 38.462 0.00 0.00 0.00 1.47
474 475 7.510001 TGGACGGAGGGAGTATTTTATTATACA 59.490 37.037 0.00 0.00 34.19 2.29
501 502 2.621055 ACTAATGCGTTTGACCTTTGCA 59.379 40.909 7.12 0.00 40.23 4.08
550 551 6.159398 AGGATTCAAAAGATACCAGGTGAGAT 59.841 38.462 0.76 0.00 0.00 2.75
557 558 3.072184 AGATACCAGGTGAGATGGCATTC 59.928 47.826 0.76 2.12 41.87 2.67
558 559 0.994247 ACCAGGTGAGATGGCATTCA 59.006 50.000 0.00 4.88 41.87 2.57
559 560 1.355381 ACCAGGTGAGATGGCATTCAA 59.645 47.619 0.00 0.00 41.87 2.69
560 561 2.225091 ACCAGGTGAGATGGCATTCAAA 60.225 45.455 0.00 0.00 41.87 2.69
597 606 7.870954 TGTCATGTCAAACCCTATATCGAATAC 59.129 37.037 0.00 0.00 0.00 1.89
601 610 6.325545 TGTCAAACCCTATATCGAATACTGGT 59.674 38.462 0.00 0.00 0.00 4.00
606 615 9.765295 AAACCCTATATCGAATACTGGTATACT 57.235 33.333 2.25 0.00 0.00 2.12
607 616 8.977267 ACCCTATATCGAATACTGGTATACTC 57.023 38.462 2.25 0.00 0.00 2.59
608 617 7.997803 ACCCTATATCGAATACTGGTATACTCC 59.002 40.741 2.25 0.00 0.00 3.85
609 618 8.219178 CCCTATATCGAATACTGGTATACTCCT 58.781 40.741 2.25 0.00 0.00 3.69
612 621 8.977267 ATATCGAATACTGGTATACTCCTACC 57.023 38.462 2.25 0.00 41.39 3.18
613 622 6.445451 TCGAATACTGGTATACTCCTACCT 57.555 41.667 2.25 0.00 41.54 3.08
614 623 6.845908 TCGAATACTGGTATACTCCTACCTT 58.154 40.000 2.25 0.00 41.54 3.50
615 624 7.977818 TCGAATACTGGTATACTCCTACCTTA 58.022 38.462 2.25 0.00 41.54 2.69
616 625 8.609483 TCGAATACTGGTATACTCCTACCTTAT 58.391 37.037 2.25 0.00 41.54 1.73
784 793 1.939934 CTCGCCAAGAACACTTCAACA 59.060 47.619 0.00 0.00 0.00 3.33
884 893 2.727071 ATCCATCCCCTCTCCCCGT 61.727 63.158 0.00 0.00 0.00 5.28
887 896 2.136878 CATCCCCTCTCCCCGTCTG 61.137 68.421 0.00 0.00 0.00 3.51
933 942 2.187946 GGGGAGATCAGCACGGTG 59.812 66.667 3.15 3.15 0.00 4.94
954 963 4.110493 GGTCCAAAGATCGAGCCG 57.890 61.111 0.00 0.00 0.00 5.52
955 964 1.218316 GGTCCAAAGATCGAGCCGT 59.782 57.895 0.00 0.00 0.00 5.68
956 965 0.806492 GGTCCAAAGATCGAGCCGTC 60.806 60.000 0.00 0.00 0.00 4.79
989 998 1.614903 CTTGGCTGGCATTTTCTGACA 59.385 47.619 4.22 0.00 42.03 3.58
998 1007 4.697756 TTTCTGACAGCCGCGGGG 62.698 66.667 29.38 15.40 0.00 5.73
1120 1129 2.334838 GTAACGTCCGCATCTTGACTT 58.665 47.619 0.00 0.00 0.00 3.01
1121 1130 1.148310 AACGTCCGCATCTTGACTTG 58.852 50.000 0.00 0.00 0.00 3.16
1122 1131 0.317160 ACGTCCGCATCTTGACTTGA 59.683 50.000 0.00 0.00 0.00 3.02
1123 1132 0.716108 CGTCCGCATCTTGACTTGAC 59.284 55.000 0.00 0.00 0.00 3.18
1124 1133 1.670087 CGTCCGCATCTTGACTTGACT 60.670 52.381 0.00 0.00 0.00 3.41
1129 1138 2.158449 CGCATCTTGACTTGACTTGACC 59.842 50.000 0.00 0.00 0.00 4.02
1132 1141 2.838736 TCTTGACTTGACTTGACCTGC 58.161 47.619 0.00 0.00 0.00 4.85
1137 1146 1.228245 TTGACTTGACCTGCCCAGC 60.228 57.895 0.00 0.00 0.00 4.85
1189 1199 4.478206 TGGTCATTCTGATTCCTGTCTC 57.522 45.455 0.00 0.00 0.00 3.36
1260 1270 7.775053 TCAGGCATAAAAAGGTTATTGTTCT 57.225 32.000 0.00 0.00 0.00 3.01
1265 1275 9.435688 GGCATAAAAAGGTTATTGTTCTTTGAT 57.564 29.630 0.00 0.00 31.93 2.57
1399 1418 2.862541 CATCTTGATTTATCGGGCCCA 58.137 47.619 24.92 9.77 0.00 5.36
1682 1723 4.096984 CCAAACTTTCTGTCTGAAGCAACT 59.903 41.667 0.00 0.00 35.89 3.16
1737 1848 5.010213 ACTTGTGGTCTCTGACTTACTCTTC 59.990 44.000 0.00 0.00 32.47 2.87
1760 1871 1.448985 GTGGCTATTCGGTTGCTTCA 58.551 50.000 0.00 0.00 0.00 3.02
1792 1903 6.515272 TGAATTAGATTTCACCCTTTGCTC 57.485 37.500 0.00 0.00 30.82 4.26
1835 1946 2.126071 GAAGCGAGCGCCACAGTA 60.126 61.111 11.66 0.00 43.17 2.74
1858 1969 1.000171 GTTTTTAGCTGCTGCCTGCTT 60.000 47.619 19.30 7.08 42.73 3.91
1895 2006 6.841229 TCTGATCCCTGATTAGAAGTACACAT 59.159 38.462 0.00 0.00 32.93 3.21
1900 2011 6.042093 TCCCTGATTAGAAGTACACATGATCC 59.958 42.308 0.00 0.00 0.00 3.36
1911 2022 7.969536 AGTACACATGATCCTGTATATTTGC 57.030 36.000 0.00 0.00 0.00 3.68
1920 2031 6.767902 TGATCCTGTATATTTGCTTGTCCTTC 59.232 38.462 0.00 0.00 0.00 3.46
1929 2040 0.036010 GCTTGTCCTTCTGGCTGCTA 60.036 55.000 0.00 0.00 0.00 3.49
1932 2043 0.610174 TGTCCTTCTGGCTGCTACAG 59.390 55.000 0.00 0.00 37.30 2.74
2015 2126 5.673337 TTAGATGTTGTTTGCTCACTGAC 57.327 39.130 0.00 0.00 0.00 3.51
2016 2127 3.544684 AGATGTTGTTTGCTCACTGACA 58.455 40.909 0.00 0.00 0.00 3.58
2017 2128 3.562973 AGATGTTGTTTGCTCACTGACAG 59.437 43.478 0.00 0.00 0.00 3.51
2018 2129 2.016318 TGTTGTTTGCTCACTGACAGG 58.984 47.619 7.51 0.00 0.00 4.00
2019 2130 1.334869 GTTGTTTGCTCACTGACAGGG 59.665 52.381 7.51 2.02 0.00 4.45
2020 2131 0.546122 TGTTTGCTCACTGACAGGGT 59.454 50.000 4.24 0.00 0.00 4.34
2065 2176 9.248291 TGTTTGATTAATTCTTTTCTTCAGTGC 57.752 29.630 0.00 0.00 0.00 4.40
2189 2300 9.606631 TGCTTGGTGTTTAAACTTGAAATTAAT 57.393 25.926 18.72 0.00 0.00 1.40
2268 2386 2.945008 TCTGCTTTTAATGGGATGCTCG 59.055 45.455 0.00 0.00 0.00 5.03
2349 2469 6.515272 ACATCACTTCAACAACTCAAAAGT 57.485 33.333 0.00 0.00 37.32 2.66
2389 2509 6.007076 TCAATTCAACTTATGCCACCAACTA 58.993 36.000 0.00 0.00 0.00 2.24
2394 2514 4.844349 ACTTATGCCACCAACTAGATGT 57.156 40.909 0.00 0.00 0.00 3.06
2395 2515 5.179452 ACTTATGCCACCAACTAGATGTT 57.821 39.130 0.00 0.00 39.92 2.71
2419 2539 8.726988 GTTATTAAGTGTAAATGGCAGTTCTGA 58.273 33.333 2.32 0.00 32.45 3.27
2422 2542 4.460263 AGTGTAAATGGCAGTTCTGAACA 58.540 39.130 21.50 0.00 0.00 3.18
2462 2582 2.765122 TCGACAACAGATGTGAATGCA 58.235 42.857 0.00 0.00 44.12 3.96
2484 2604 2.341257 CAACAGGTCTTCAGGTCATCG 58.659 52.381 0.00 0.00 0.00 3.84
2797 2917 4.393990 GGTTTTGGTCGTGTCTATAAAGGG 59.606 45.833 0.00 0.00 0.00 3.95
2841 2961 7.606839 GGTTTGTTATCTCTAGCCTTGTTAACT 59.393 37.037 7.22 0.00 0.00 2.24
2872 2992 7.360113 TCCCTTTTCTGTTAAAAAGAGCAAT 57.640 32.000 9.96 0.00 45.12 3.56
3079 3199 6.493166 TCCCAATCTTGTCAGATTAATTGGT 58.507 36.000 10.16 0.00 46.44 3.67
3109 3229 2.586792 GGTGATCAGCGCCTCCTT 59.413 61.111 9.50 0.00 44.03 3.36
3261 3467 8.072567 CAGTATCTTGATATTTAGTTGGCTTGC 58.927 37.037 0.00 0.00 0.00 4.01
3287 3494 8.680903 CCTTCATAAAGAACATGTAAGAGCAAT 58.319 33.333 0.00 0.00 34.14 3.56
3564 3774 3.423539 TGTTCATCCCCTCAACAAGAG 57.576 47.619 0.00 0.00 44.31 2.85
3569 3779 0.250901 TCCCCTCAACAAGAGCTTGC 60.251 55.000 9.99 0.00 44.03 4.01
3616 3826 3.717576 ACTCATGGATCACTCTCTGGAA 58.282 45.455 0.00 0.00 0.00 3.53
3668 3878 3.675348 TGGAATGCAAGGATGAGGATT 57.325 42.857 0.00 0.00 0.00 3.01
3674 3884 2.097825 GCAAGGATGAGGATTGCTGTT 58.902 47.619 2.07 0.00 44.57 3.16
3764 3974 8.868522 TCAAACCATCAAATATTCTTCTGAGT 57.131 30.769 0.00 0.00 0.00 3.41
4136 4346 2.892425 GCTCGCCCGATGTTCAGG 60.892 66.667 0.00 0.00 0.00 3.86
4253 4463 2.048222 CAGGAGAAAGCGGCGTCA 60.048 61.111 9.37 0.00 0.00 4.35
4304 4514 4.813697 GCACTTTCTTATCTAGCTTCCCAG 59.186 45.833 0.00 0.00 0.00 4.45
4436 4646 2.649034 GACGCCGTGGACTTGAGA 59.351 61.111 0.00 0.00 0.00 3.27
4472 4682 1.279558 GGAGGGGAGTTTGAAGAGGAC 59.720 57.143 0.00 0.00 0.00 3.85
4613 4823 0.107508 CTGTCAAGGTCGATGCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
4631 4841 2.158986 CCATGAGAAACCGAGAGCAGAT 60.159 50.000 0.00 0.00 0.00 2.90
4645 4855 5.555017 GAGAGCAGATCCTGGCAAATATAA 58.445 41.667 4.68 0.00 31.21 0.98
4685 4895 3.035576 GCCTTTACGAACGGGCAGC 62.036 63.158 7.18 0.00 43.59 5.25
4687 4897 3.362851 CTTTACGAACGGGCAGCGC 62.363 63.158 0.00 0.00 0.00 5.92
4714 4978 1.266989 GCTTGTGTTTACAGACCAGCC 59.733 52.381 0.00 0.00 38.23 4.85
4719 4983 1.347707 TGTTTACAGACCAGCCCTCTG 59.652 52.381 2.15 2.15 40.97 3.35
4796 5060 6.202516 TGGGTTTTTGTTGTTTCTACTGAG 57.797 37.500 0.00 0.00 0.00 3.35
4912 5177 3.144506 TCGACGTATAGAAGATCACCCC 58.855 50.000 0.00 0.00 0.00 4.95
4927 5192 4.847990 TCACCCCCTTTGTATTTATCGT 57.152 40.909 0.00 0.00 0.00 3.73
5010 5276 6.166982 AGAGTTGTCTTGTAAGTAATCCTGC 58.833 40.000 0.00 0.00 0.00 4.85
5119 5385 7.120726 GGCATGGTTGTACAGACTAAAGTAAAT 59.879 37.037 0.00 0.00 0.00 1.40
5297 5564 9.996554 TGAAACATCTAGTGATTTCAGTTTAGA 57.003 29.630 11.46 0.00 35.20 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.612879 AGGAATGAGAGAGATATGGATTAGAAA 57.387 33.333 0.00 0.00 0.00 2.52
8 9 9.612879 AAGGAATGAGAGAGATATGGATTAGAA 57.387 33.333 0.00 0.00 0.00 2.10
9 10 9.612879 AAAGGAATGAGAGAGATATGGATTAGA 57.387 33.333 0.00 0.00 0.00 2.10
10 11 9.874205 GAAAGGAATGAGAGAGATATGGATTAG 57.126 37.037 0.00 0.00 0.00 1.73
11 12 9.612879 AGAAAGGAATGAGAGAGATATGGATTA 57.387 33.333 0.00 0.00 0.00 1.75
12 13 8.508969 AGAAAGGAATGAGAGAGATATGGATT 57.491 34.615 0.00 0.00 0.00 3.01
13 14 8.508969 AAGAAAGGAATGAGAGAGATATGGAT 57.491 34.615 0.00 0.00 0.00 3.41
14 15 7.927683 AAGAAAGGAATGAGAGAGATATGGA 57.072 36.000 0.00 0.00 0.00 3.41
15 16 8.646004 TGTAAGAAAGGAATGAGAGAGATATGG 58.354 37.037 0.00 0.00 0.00 2.74
18 19 9.877178 GTTTGTAAGAAAGGAATGAGAGAGATA 57.123 33.333 0.00 0.00 0.00 1.98
19 20 8.378565 TGTTTGTAAGAAAGGAATGAGAGAGAT 58.621 33.333 0.00 0.00 0.00 2.75
20 21 7.735917 TGTTTGTAAGAAAGGAATGAGAGAGA 58.264 34.615 0.00 0.00 0.00 3.10
21 22 7.969536 TGTTTGTAAGAAAGGAATGAGAGAG 57.030 36.000 0.00 0.00 0.00 3.20
22 23 8.746052 TTTGTTTGTAAGAAAGGAATGAGAGA 57.254 30.769 0.00 0.00 0.00 3.10
23 24 9.455847 CTTTTGTTTGTAAGAAAGGAATGAGAG 57.544 33.333 0.00 0.00 0.00 3.20
24 25 9.184523 TCTTTTGTTTGTAAGAAAGGAATGAGA 57.815 29.630 0.00 0.00 29.02 3.27
25 26 9.455847 CTCTTTTGTTTGTAAGAAAGGAATGAG 57.544 33.333 0.00 0.00 31.17 2.90
26 27 8.966868 ACTCTTTTGTTTGTAAGAAAGGAATGA 58.033 29.630 0.00 0.00 31.17 2.57
27 28 9.586435 AACTCTTTTGTTTGTAAGAAAGGAATG 57.414 29.630 0.00 0.00 31.17 2.67
29 30 9.990360 AAAACTCTTTTGTTTGTAAGAAAGGAA 57.010 25.926 0.00 0.00 39.71 3.36
30 31 9.990360 AAAAACTCTTTTGTTTGTAAGAAAGGA 57.010 25.926 0.00 0.00 39.71 3.36
42 43 9.098355 GCCTTCAATAAGAAAAACTCTTTTGTT 57.902 29.630 0.00 0.00 41.97 2.83
43 44 8.478066 AGCCTTCAATAAGAAAAACTCTTTTGT 58.522 29.630 0.00 0.00 41.97 2.83
44 45 8.758715 CAGCCTTCAATAAGAAAAACTCTTTTG 58.241 33.333 0.00 0.00 41.97 2.44
45 46 7.928167 CCAGCCTTCAATAAGAAAAACTCTTTT 59.072 33.333 0.00 0.00 41.97 2.27
46 47 7.287696 TCCAGCCTTCAATAAGAAAAACTCTTT 59.712 33.333 0.00 0.00 41.97 2.52
47 48 6.777580 TCCAGCCTTCAATAAGAAAAACTCTT 59.222 34.615 0.00 0.00 46.52 2.85
48 49 6.306987 TCCAGCCTTCAATAAGAAAAACTCT 58.693 36.000 0.00 0.00 35.40 3.24
49 50 6.575162 TCCAGCCTTCAATAAGAAAAACTC 57.425 37.500 0.00 0.00 35.40 3.01
50 51 7.544804 AATCCAGCCTTCAATAAGAAAAACT 57.455 32.000 0.00 0.00 35.40 2.66
51 52 9.875691 AATAATCCAGCCTTCAATAAGAAAAAC 57.124 29.630 0.00 0.00 35.40 2.43
99 100 9.727859 AGAGTGATATAACTAGTATGTCGTGAT 57.272 33.333 0.00 0.00 34.00 3.06
100 101 9.205719 GAGAGTGATATAACTAGTATGTCGTGA 57.794 37.037 0.00 0.00 34.00 4.35
101 102 8.989980 TGAGAGTGATATAACTAGTATGTCGTG 58.010 37.037 0.00 0.00 34.00 4.35
102 103 8.991026 GTGAGAGTGATATAACTAGTATGTCGT 58.009 37.037 0.00 0.00 34.00 4.34
103 104 9.210329 AGTGAGAGTGATATAACTAGTATGTCG 57.790 37.037 0.00 0.00 34.00 4.35
109 110 9.962809 GGGTATAGTGAGAGTGATATAACTAGT 57.037 37.037 0.00 0.00 0.00 2.57
110 111 9.961264 TGGGTATAGTGAGAGTGATATAACTAG 57.039 37.037 0.00 0.00 0.00 2.57
111 112 9.736414 GTGGGTATAGTGAGAGTGATATAACTA 57.264 37.037 0.00 0.00 0.00 2.24
112 113 7.390996 CGTGGGTATAGTGAGAGTGATATAACT 59.609 40.741 0.00 0.00 0.00 2.24
113 114 7.174599 ACGTGGGTATAGTGAGAGTGATATAAC 59.825 40.741 0.00 0.00 0.00 1.89
114 115 7.229308 ACGTGGGTATAGTGAGAGTGATATAA 58.771 38.462 0.00 0.00 0.00 0.98
115 116 6.776744 ACGTGGGTATAGTGAGAGTGATATA 58.223 40.000 0.00 0.00 0.00 0.86
116 117 5.632118 ACGTGGGTATAGTGAGAGTGATAT 58.368 41.667 0.00 0.00 0.00 1.63
117 118 5.045012 ACGTGGGTATAGTGAGAGTGATA 57.955 43.478 0.00 0.00 0.00 2.15
118 119 3.899726 ACGTGGGTATAGTGAGAGTGAT 58.100 45.455 0.00 0.00 0.00 3.06
119 120 3.361281 ACGTGGGTATAGTGAGAGTGA 57.639 47.619 0.00 0.00 0.00 3.41
120 121 6.872628 TTATACGTGGGTATAGTGAGAGTG 57.127 41.667 0.00 0.00 41.38 3.51
121 122 9.175312 CATATTATACGTGGGTATAGTGAGAGT 57.825 37.037 0.00 0.00 41.38 3.24
122 123 9.175312 ACATATTATACGTGGGTATAGTGAGAG 57.825 37.037 0.00 0.00 41.38 3.20
123 124 8.953313 CACATATTATACGTGGGTATAGTGAGA 58.047 37.037 0.00 0.00 41.38 3.27
124 125 8.188799 CCACATATTATACGTGGGTATAGTGAG 58.811 40.741 9.38 4.72 45.32 3.51
125 126 8.058667 CCACATATTATACGTGGGTATAGTGA 57.941 38.462 9.38 0.00 45.32 3.41
142 143 9.830186 AGAGAGTATTCTACATACCCACATATT 57.170 33.333 0.00 0.00 32.53 1.28
143 144 9.830186 AAGAGAGTATTCTACATACCCACATAT 57.170 33.333 0.00 0.00 32.53 1.78
144 145 9.298250 GAAGAGAGTATTCTACATACCCACATA 57.702 37.037 0.00 0.00 32.53 2.29
145 146 7.785028 TGAAGAGAGTATTCTACATACCCACAT 59.215 37.037 0.00 0.00 32.53 3.21
146 147 7.123383 TGAAGAGAGTATTCTACATACCCACA 58.877 38.462 0.00 0.00 32.53 4.17
147 148 7.584122 TGAAGAGAGTATTCTACATACCCAC 57.416 40.000 0.00 0.00 32.53 4.61
148 149 8.783660 AATGAAGAGAGTATTCTACATACCCA 57.216 34.615 0.00 0.00 32.53 4.51
149 150 8.861086 TGAATGAAGAGAGTATTCTACATACCC 58.139 37.037 0.00 0.00 32.53 3.69
203 204 8.297426 CGCTTATTTCAGACTGTATATAGTCCA 58.703 37.037 21.97 9.66 46.48 4.02
204 205 8.512956 TCGCTTATTTCAGACTGTATATAGTCC 58.487 37.037 21.97 8.07 46.48 3.85
205 206 9.894783 TTCGCTTATTTCAGACTGTATATAGTC 57.105 33.333 19.03 19.03 45.83 2.59
206 207 9.680315 GTTCGCTTATTTCAGACTGTATATAGT 57.320 33.333 1.18 1.18 0.00 2.12
207 208 9.678941 TGTTCGCTTATTTCAGACTGTATATAG 57.321 33.333 1.59 0.00 0.00 1.31
209 210 8.942338 TTGTTCGCTTATTTCAGACTGTATAT 57.058 30.769 1.59 0.00 0.00 0.86
210 211 8.653338 GTTTGTTCGCTTATTTCAGACTGTATA 58.347 33.333 1.59 0.00 0.00 1.47
211 212 7.172532 TGTTTGTTCGCTTATTTCAGACTGTAT 59.827 33.333 1.59 0.62 0.00 2.29
212 213 6.480651 TGTTTGTTCGCTTATTTCAGACTGTA 59.519 34.615 1.59 0.00 0.00 2.74
213 214 5.295787 TGTTTGTTCGCTTATTTCAGACTGT 59.704 36.000 1.59 0.00 0.00 3.55
214 215 5.621228 GTGTTTGTTCGCTTATTTCAGACTG 59.379 40.000 0.00 0.00 0.00 3.51
215 216 5.295787 TGTGTTTGTTCGCTTATTTCAGACT 59.704 36.000 0.00 0.00 0.00 3.24
216 217 5.507077 TGTGTTTGTTCGCTTATTTCAGAC 58.493 37.500 0.00 0.00 0.00 3.51
217 218 5.743026 TGTGTTTGTTCGCTTATTTCAGA 57.257 34.783 0.00 0.00 0.00 3.27
218 219 6.636447 TCAATGTGTTTGTTCGCTTATTTCAG 59.364 34.615 0.00 0.00 36.65 3.02
219 220 6.499172 TCAATGTGTTTGTTCGCTTATTTCA 58.501 32.000 0.00 0.00 36.65 2.69
220 221 6.984740 TCAATGTGTTTGTTCGCTTATTTC 57.015 33.333 0.00 0.00 36.65 2.17
221 222 7.491048 AGTTTCAATGTGTTTGTTCGCTTATTT 59.509 29.630 0.00 0.00 36.65 1.40
222 223 6.978080 AGTTTCAATGTGTTTGTTCGCTTATT 59.022 30.769 0.00 0.00 36.65 1.40
223 224 6.503524 AGTTTCAATGTGTTTGTTCGCTTAT 58.496 32.000 0.00 0.00 36.65 1.73
224 225 5.885881 AGTTTCAATGTGTTTGTTCGCTTA 58.114 33.333 0.00 0.00 36.65 3.09
225 226 4.743493 AGTTTCAATGTGTTTGTTCGCTT 58.257 34.783 0.00 0.00 36.65 4.68
226 227 4.370364 AGTTTCAATGTGTTTGTTCGCT 57.630 36.364 0.00 0.00 36.65 4.93
227 228 4.326009 ACAAGTTTCAATGTGTTTGTTCGC 59.674 37.500 0.00 0.00 36.65 4.70
228 229 5.799936 AGACAAGTTTCAATGTGTTTGTTCG 59.200 36.000 0.00 0.00 36.65 3.95
229 230 8.856490 ATAGACAAGTTTCAATGTGTTTGTTC 57.144 30.769 0.00 0.00 36.65 3.18
277 278 8.971073 CCCTGGTTCACAAATATAAGATCTTTT 58.029 33.333 14.36 8.54 0.00 2.27
278 279 8.336235 TCCCTGGTTCACAAATATAAGATCTTT 58.664 33.333 14.36 4.45 0.00 2.52
279 280 7.872138 TCCCTGGTTCACAAATATAAGATCTT 58.128 34.615 13.56 13.56 0.00 2.40
280 281 7.127955 ACTCCCTGGTTCACAAATATAAGATCT 59.872 37.037 0.00 0.00 0.00 2.75
281 282 7.283329 ACTCCCTGGTTCACAAATATAAGATC 58.717 38.462 0.00 0.00 0.00 2.75
282 283 7.213178 ACTCCCTGGTTCACAAATATAAGAT 57.787 36.000 0.00 0.00 0.00 2.40
283 284 6.636454 ACTCCCTGGTTCACAAATATAAGA 57.364 37.500 0.00 0.00 0.00 2.10
284 285 8.980481 AATACTCCCTGGTTCACAAATATAAG 57.020 34.615 0.00 0.00 0.00 1.73
287 288 9.936329 AATAAATACTCCCTGGTTCACAAATAT 57.064 29.630 0.00 0.00 0.00 1.28
288 289 9.762381 AAATAAATACTCCCTGGTTCACAAATA 57.238 29.630 0.00 0.00 0.00 1.40
289 290 8.664669 AAATAAATACTCCCTGGTTCACAAAT 57.335 30.769 0.00 0.00 0.00 2.32
290 291 9.238368 CTAAATAAATACTCCCTGGTTCACAAA 57.762 33.333 0.00 0.00 0.00 2.83
291 292 8.387813 ACTAAATAAATACTCCCTGGTTCACAA 58.612 33.333 0.00 0.00 0.00 3.33
292 293 7.827236 CACTAAATAAATACTCCCTGGTTCACA 59.173 37.037 0.00 0.00 0.00 3.58
293 294 7.827729 ACACTAAATAAATACTCCCTGGTTCAC 59.172 37.037 0.00 0.00 0.00 3.18
294 295 7.924541 ACACTAAATAAATACTCCCTGGTTCA 58.075 34.615 0.00 0.00 0.00 3.18
295 296 8.803397 AACACTAAATAAATACTCCCTGGTTC 57.197 34.615 0.00 0.00 0.00 3.62
296 297 9.239551 GAAACACTAAATAAATACTCCCTGGTT 57.760 33.333 0.00 0.00 0.00 3.67
297 298 8.612145 AGAAACACTAAATAAATACTCCCTGGT 58.388 33.333 0.00 0.00 0.00 4.00
328 329 9.544579 AGGGAGTAGTACTTAACAAATAGTCTT 57.455 33.333 0.00 0.00 0.00 3.01
329 330 9.187996 GAGGGAGTAGTACTTAACAAATAGTCT 57.812 37.037 0.00 0.00 0.00 3.24
330 331 8.412456 GGAGGGAGTAGTACTTAACAAATAGTC 58.588 40.741 0.00 0.00 0.00 2.59
331 332 7.067981 CGGAGGGAGTAGTACTTAACAAATAGT 59.932 40.741 0.00 0.00 0.00 2.12
332 333 7.067981 ACGGAGGGAGTAGTACTTAACAAATAG 59.932 40.741 0.00 0.00 0.00 1.73
333 334 6.891908 ACGGAGGGAGTAGTACTTAACAAATA 59.108 38.462 0.00 0.00 0.00 1.40
334 335 5.718607 ACGGAGGGAGTAGTACTTAACAAAT 59.281 40.000 0.00 0.00 0.00 2.32
335 336 5.079643 ACGGAGGGAGTAGTACTTAACAAA 58.920 41.667 0.00 0.00 0.00 2.83
336 337 4.666512 ACGGAGGGAGTAGTACTTAACAA 58.333 43.478 0.00 0.00 0.00 2.83
337 338 4.265073 GACGGAGGGAGTAGTACTTAACA 58.735 47.826 0.00 0.00 0.00 2.41
338 339 3.629855 GGACGGAGGGAGTAGTACTTAAC 59.370 52.174 0.00 0.00 0.00 2.01
339 340 3.266772 TGGACGGAGGGAGTAGTACTTAA 59.733 47.826 0.00 0.00 0.00 1.85
340 341 2.846206 TGGACGGAGGGAGTAGTACTTA 59.154 50.000 0.00 0.00 0.00 2.24
341 342 1.637553 TGGACGGAGGGAGTAGTACTT 59.362 52.381 0.00 0.00 0.00 2.24
342 343 1.212441 CTGGACGGAGGGAGTAGTACT 59.788 57.143 1.37 1.37 0.00 2.73
343 344 1.211457 TCTGGACGGAGGGAGTAGTAC 59.789 57.143 0.00 0.00 0.00 2.73
344 345 1.588239 TCTGGACGGAGGGAGTAGTA 58.412 55.000 0.00 0.00 0.00 1.82
345 346 0.702902 TTCTGGACGGAGGGAGTAGT 59.297 55.000 0.00 0.00 0.00 2.73
346 347 1.848652 TTTCTGGACGGAGGGAGTAG 58.151 55.000 0.00 0.00 0.00 2.57
347 348 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
348 349 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
349 350 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
350 351 2.544844 AGTATTTCTGGACGGAGGGA 57.455 50.000 0.00 0.00 0.00 4.20
351 352 4.558898 CGATAAGTATTTCTGGACGGAGGG 60.559 50.000 0.00 0.00 0.00 4.30
352 353 4.277672 TCGATAAGTATTTCTGGACGGAGG 59.722 45.833 0.00 0.00 0.00 4.30
353 354 5.434352 TCGATAAGTATTTCTGGACGGAG 57.566 43.478 0.00 0.00 0.00 4.63
354 355 4.277672 CCTCGATAAGTATTTCTGGACGGA 59.722 45.833 0.00 0.00 0.00 4.69
355 356 4.277672 TCCTCGATAAGTATTTCTGGACGG 59.722 45.833 0.00 0.00 0.00 4.79
356 357 5.434352 TCCTCGATAAGTATTTCTGGACG 57.566 43.478 0.00 0.00 0.00 4.79
357 358 9.413048 CTATTTCCTCGATAAGTATTTCTGGAC 57.587 37.037 0.00 0.00 0.00 4.02
358 359 9.363401 TCTATTTCCTCGATAAGTATTTCTGGA 57.637 33.333 0.00 0.00 0.00 3.86
410 411 9.698309 CAAAAAGATGGATGTATCTAGACGTAT 57.302 33.333 0.00 0.00 36.42 3.06
411 412 8.909923 TCAAAAAGATGGATGTATCTAGACGTA 58.090 33.333 0.00 0.00 36.42 3.57
412 413 7.707035 GTCAAAAAGATGGATGTATCTAGACGT 59.293 37.037 0.00 0.00 36.42 4.34
413 414 7.706607 TGTCAAAAAGATGGATGTATCTAGACG 59.293 37.037 0.00 0.00 36.42 4.18
414 415 8.948631 TGTCAAAAAGATGGATGTATCTAGAC 57.051 34.615 0.00 0.00 36.42 2.59
415 416 9.605275 CTTGTCAAAAAGATGGATGTATCTAGA 57.395 33.333 0.00 0.00 36.42 2.43
416 417 9.388506 ACTTGTCAAAAAGATGGATGTATCTAG 57.611 33.333 0.00 0.00 36.42 2.43
418 419 9.911788 ATACTTGTCAAAAAGATGGATGTATCT 57.088 29.630 0.00 0.00 39.03 1.98
422 423 9.082313 AGAAATACTTGTCAAAAAGATGGATGT 57.918 29.630 0.00 0.00 0.00 3.06
423 424 9.350357 CAGAAATACTTGTCAAAAAGATGGATG 57.650 33.333 0.00 0.00 0.00 3.51
424 425 8.526147 CCAGAAATACTTGTCAAAAAGATGGAT 58.474 33.333 0.00 0.00 0.00 3.41
425 426 7.723616 TCCAGAAATACTTGTCAAAAAGATGGA 59.276 33.333 0.00 0.00 0.00 3.41
426 427 7.809806 GTCCAGAAATACTTGTCAAAAAGATGG 59.190 37.037 0.00 0.00 0.00 3.51
427 428 7.535258 CGTCCAGAAATACTTGTCAAAAAGATG 59.465 37.037 0.00 0.00 0.00 2.90
428 429 7.308589 CCGTCCAGAAATACTTGTCAAAAAGAT 60.309 37.037 0.00 0.00 0.00 2.40
429 430 6.017440 CCGTCCAGAAATACTTGTCAAAAAGA 60.017 38.462 0.00 0.00 0.00 2.52
430 431 6.017440 TCCGTCCAGAAATACTTGTCAAAAAG 60.017 38.462 0.00 0.00 0.00 2.27
431 432 5.823570 TCCGTCCAGAAATACTTGTCAAAAA 59.176 36.000 0.00 0.00 0.00 1.94
432 433 5.369833 TCCGTCCAGAAATACTTGTCAAAA 58.630 37.500 0.00 0.00 0.00 2.44
433 434 4.963373 TCCGTCCAGAAATACTTGTCAAA 58.037 39.130 0.00 0.00 0.00 2.69
434 435 4.562757 CCTCCGTCCAGAAATACTTGTCAA 60.563 45.833 0.00 0.00 0.00 3.18
435 436 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
436 437 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
437 438 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
438 439 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
439 440 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
440 441 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
441 442 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
442 443 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
443 444 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
444 445 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
445 446 2.544844 AATACTCCCTCCGTCCAGAA 57.455 50.000 0.00 0.00 0.00 3.02
446 447 2.544844 AAATACTCCCTCCGTCCAGA 57.455 50.000 0.00 0.00 0.00 3.86
447 448 4.957684 ATAAAATACTCCCTCCGTCCAG 57.042 45.455 0.00 0.00 0.00 3.86
448 449 7.510001 TGTATAATAAAATACTCCCTCCGTCCA 59.490 37.037 0.00 0.00 34.13 4.02
449 450 7.899973 TGTATAATAAAATACTCCCTCCGTCC 58.100 38.462 0.00 0.00 34.13 4.79
469 470 8.984764 GGTCAAACGCATTAGTTCATATGTATA 58.015 33.333 1.90 0.00 32.43 1.47
470 471 7.715249 AGGTCAAACGCATTAGTTCATATGTAT 59.285 33.333 1.90 0.00 32.43 2.29
471 472 7.045416 AGGTCAAACGCATTAGTTCATATGTA 58.955 34.615 1.90 0.00 32.43 2.29
472 473 5.880332 AGGTCAAACGCATTAGTTCATATGT 59.120 36.000 1.90 0.00 32.43 2.29
473 474 6.363577 AGGTCAAACGCATTAGTTCATATG 57.636 37.500 0.00 0.00 32.43 1.78
474 475 7.250569 CAAAGGTCAAACGCATTAGTTCATAT 58.749 34.615 0.00 0.00 32.43 1.78
488 489 3.456280 TGCTCATTTGCAAAGGTCAAAC 58.544 40.909 21.93 9.71 40.29 2.93
501 502 6.156748 TCGGTACAGTGTATATGCTCATTT 57.843 37.500 6.21 0.00 0.00 2.32
550 551 1.551430 CAAGGCTGGATTTGAATGCCA 59.449 47.619 0.00 0.00 45.42 4.92
557 558 2.559668 ACATGACACAAGGCTGGATTTG 59.440 45.455 0.00 0.00 0.00 2.32
558 559 2.821969 GACATGACACAAGGCTGGATTT 59.178 45.455 0.00 0.00 0.00 2.17
559 560 2.224843 TGACATGACACAAGGCTGGATT 60.225 45.455 0.00 0.00 0.00 3.01
560 561 1.352017 TGACATGACACAAGGCTGGAT 59.648 47.619 0.00 0.00 0.00 3.41
597 606 8.535335 TCGTAGTATAAGGTAGGAGTATACCAG 58.465 40.741 0.00 0.00 46.56 4.00
601 610 8.138928 TGCTCGTAGTATAAGGTAGGAGTATA 57.861 38.462 0.00 0.00 34.86 1.47
606 615 5.709164 GGATTGCTCGTAGTATAAGGTAGGA 59.291 44.000 0.00 0.00 0.00 2.94
607 616 5.105837 GGGATTGCTCGTAGTATAAGGTAGG 60.106 48.000 0.00 0.00 0.00 3.18
608 617 5.475909 TGGGATTGCTCGTAGTATAAGGTAG 59.524 44.000 0.00 0.00 0.00 3.18
609 618 5.387788 TGGGATTGCTCGTAGTATAAGGTA 58.612 41.667 0.00 0.00 0.00 3.08
610 619 4.220724 TGGGATTGCTCGTAGTATAAGGT 58.779 43.478 0.00 0.00 0.00 3.50
611 620 4.866508 TGGGATTGCTCGTAGTATAAGG 57.133 45.455 0.00 0.00 0.00 2.69
612 621 6.455647 TGATTGGGATTGCTCGTAGTATAAG 58.544 40.000 0.00 0.00 0.00 1.73
613 622 6.266786 TCTGATTGGGATTGCTCGTAGTATAA 59.733 38.462 0.00 0.00 0.00 0.98
614 623 5.773176 TCTGATTGGGATTGCTCGTAGTATA 59.227 40.000 0.00 0.00 0.00 1.47
615 624 4.588951 TCTGATTGGGATTGCTCGTAGTAT 59.411 41.667 0.00 0.00 0.00 2.12
616 625 3.958147 TCTGATTGGGATTGCTCGTAGTA 59.042 43.478 0.00 0.00 0.00 1.82
698 707 4.670221 GCTGTCATTTTGTCGAGCTAAAGG 60.670 45.833 0.00 0.00 0.00 3.11
784 793 9.410556 GCAAATTTCGTGAATATTATAATGGCT 57.589 29.630 8.28 0.00 0.00 4.75
903 912 2.604079 TCCCCGGCGTGGAAAGTA 60.604 61.111 9.15 0.00 42.00 2.24
933 942 1.521681 CTCGATCTTTGGACCGCCC 60.522 63.158 0.00 0.00 0.00 6.13
975 984 1.865788 GCGGCTGTCAGAAAATGCCA 61.866 55.000 3.32 0.00 43.38 4.92
998 1007 1.817099 CACGGGAAGCAGCTCATCC 60.817 63.158 4.67 4.67 0.00 3.51
1106 1115 2.037121 TCAAGTCAAGTCAAGATGCGGA 59.963 45.455 0.00 0.00 0.00 5.54
1120 1129 1.708993 AAGCTGGGCAGGTCAAGTCA 61.709 55.000 0.00 0.00 38.35 3.41
1121 1130 0.957888 GAAGCTGGGCAGGTCAAGTC 60.958 60.000 0.00 0.00 38.35 3.01
1122 1131 1.073897 GAAGCTGGGCAGGTCAAGT 59.926 57.895 0.00 0.00 38.35 3.16
1123 1132 0.959372 CAGAAGCTGGGCAGGTCAAG 60.959 60.000 0.00 0.00 38.35 3.02
1124 1133 1.073722 CAGAAGCTGGGCAGGTCAA 59.926 57.895 0.00 0.00 38.35 3.18
1132 1141 3.123620 GTCTGCGCAGAAGCTGGG 61.124 66.667 39.63 12.43 45.35 4.45
1137 1146 2.048222 TTCCGGTCTGCGCAGAAG 60.048 61.111 39.63 32.63 39.48 2.85
1260 1270 3.370527 GCTAGGCCTCTTGTACCATCAAA 60.371 47.826 9.68 0.00 0.00 2.69
1265 1275 1.195115 CAGCTAGGCCTCTTGTACCA 58.805 55.000 9.68 0.00 0.00 3.25
1370 1389 5.178252 CCGATAAATCAAGATGCTACAGGTG 59.822 44.000 0.00 0.00 0.00 4.00
1372 1391 4.692625 CCCGATAAATCAAGATGCTACAGG 59.307 45.833 0.00 0.00 0.00 4.00
1399 1418 0.971386 TTCGCTTAGTCCCCGTTTCT 59.029 50.000 0.00 0.00 0.00 2.52
1586 1627 5.403897 TCACGCAACTTAAGTTCAGAAAG 57.596 39.130 18.00 7.25 35.83 2.62
1597 1638 2.631062 TCTCTCCCTTTCACGCAACTTA 59.369 45.455 0.00 0.00 0.00 2.24
1599 1640 1.048601 TCTCTCCCTTTCACGCAACT 58.951 50.000 0.00 0.00 0.00 3.16
1682 1723 9.814899 ACAACACATCAAATATTTGTTTCTTCA 57.185 25.926 23.95 6.96 39.18 3.02
1719 1760 2.424246 CCCGAAGAGTAAGTCAGAGACC 59.576 54.545 0.00 0.00 32.18 3.85
1737 1848 1.817941 CAACCGAATAGCCACCCCG 60.818 63.158 0.00 0.00 0.00 5.73
1760 1871 6.393171 GGTGAAATCTAATTCAAGCAAGCTT 58.607 36.000 0.59 0.59 40.76 3.74
1835 1946 2.424956 GCAGGCAGCAGCTAAAAACTAT 59.575 45.455 0.00 0.00 44.79 2.12
1858 1969 2.306805 AGGGATCAGACTTGCATGTTCA 59.693 45.455 6.70 0.00 0.00 3.18
1895 2006 6.252599 AGGACAAGCAAATATACAGGATCA 57.747 37.500 0.00 0.00 0.00 2.92
1900 2011 5.220931 GCCAGAAGGACAAGCAAATATACAG 60.221 44.000 0.00 0.00 36.89 2.74
1911 2022 1.002430 TGTAGCAGCCAGAAGGACAAG 59.998 52.381 0.00 0.00 36.89 3.16
1920 2031 2.462456 TGAGAAACTGTAGCAGCCAG 57.538 50.000 0.00 0.00 34.37 4.85
1929 2040 3.618507 GCTGCAGGTAGATGAGAAACTGT 60.619 47.826 17.12 0.00 0.00 3.55
1932 2043 2.284190 GGCTGCAGGTAGATGAGAAAC 58.716 52.381 17.12 0.00 0.00 2.78
2015 2126 1.348064 TCTCTTGTACCACCACCCTG 58.652 55.000 0.00 0.00 0.00 4.45
2016 2127 2.344093 ATCTCTTGTACCACCACCCT 57.656 50.000 0.00 0.00 0.00 4.34
2017 2128 3.434940 AAATCTCTTGTACCACCACCC 57.565 47.619 0.00 0.00 0.00 4.61
2018 2129 5.497474 ACATAAATCTCTTGTACCACCACC 58.503 41.667 0.00 0.00 0.00 4.61
2019 2130 7.174253 TCAAACATAAATCTCTTGTACCACCAC 59.826 37.037 0.00 0.00 0.00 4.16
2020 2131 7.227873 TCAAACATAAATCTCTTGTACCACCA 58.772 34.615 0.00 0.00 0.00 4.17
2189 2300 9.976511 CCGACACTTTATGGATCTTATAGTTAA 57.023 33.333 0.00 0.00 0.00 2.01
2268 2386 8.827177 TCCAATATAAATACCTTCACGATCAC 57.173 34.615 0.00 0.00 0.00 3.06
2349 2469 7.661437 AGTTGAATTGAAGTGCAAGATACTACA 59.339 33.333 0.00 0.00 40.42 2.74
2389 2509 8.807948 ACTGCCATTTACACTTAATAACATCT 57.192 30.769 0.00 0.00 0.00 2.90
2394 2514 8.856153 TCAGAACTGCCATTTACACTTAATAA 57.144 30.769 0.00 0.00 0.00 1.40
2395 2515 8.726988 GTTCAGAACTGCCATTTACACTTAATA 58.273 33.333 6.00 0.00 0.00 0.98
2419 2539 6.622427 AATACTCTACTGCCCTAACTTGTT 57.378 37.500 0.00 0.00 0.00 2.83
2422 2542 5.067544 GTCGAATACTCTACTGCCCTAACTT 59.932 44.000 0.00 0.00 0.00 2.66
2797 2917 1.340405 ACCTGTCCATTCTCCATGTGC 60.340 52.381 0.00 0.00 0.00 4.57
2872 2992 4.941263 GCAGTACATGAAAGATAACACCCA 59.059 41.667 0.00 0.00 0.00 4.51
3079 3199 2.874086 CTGATCACCATCTGCGCAATAA 59.126 45.455 13.05 0.00 0.00 1.40
3261 3467 7.615582 TGCTCTTACATGTTCTTTATGAAGG 57.384 36.000 2.30 0.00 35.01 3.46
3287 3494 9.650714 ACCACACCTATACATGTATAGAAGTTA 57.349 33.333 37.80 15.57 44.80 2.24
3350 3560 8.902540 TTTAGAGTTGTATATGTTAGCCATGG 57.097 34.615 7.63 7.63 34.86 3.66
3564 3774 5.526506 AAGAAGAAATATGGATGGCAAGC 57.473 39.130 0.00 0.00 0.00 4.01
3616 3826 2.847234 TGTCTGGTGGGCGGTCTT 60.847 61.111 0.00 0.00 0.00 3.01
3674 3884 2.192861 CAAACCCTTCGCTGCACCA 61.193 57.895 0.00 0.00 0.00 4.17
3764 3974 5.128827 AGACAGCTTCGGGTAATAATCTTCA 59.871 40.000 0.00 0.00 0.00 3.02
4136 4346 1.289800 GGCAGAACTTTCGACGGTCC 61.290 60.000 1.91 0.00 0.00 4.46
4169 4379 1.076777 ATACCGGCCTTGCAGCAAT 60.077 52.632 8.67 0.00 0.00 3.56
4304 4514 4.558538 ACAGCTTTTCGGATCATAATGC 57.441 40.909 0.00 0.00 0.00 3.56
4436 4646 2.628290 CCCTCCTCTAGCCTCCTTTCTT 60.628 54.545 0.00 0.00 0.00 2.52
4472 4682 2.039405 GCAGCAGCCTTCACTGAGG 61.039 63.158 0.00 0.00 40.25 3.86
4613 4823 1.478510 GGATCTGCTCTCGGTTTCTCA 59.521 52.381 0.00 0.00 0.00 3.27
4631 4841 3.554934 CTGCCTGTTATATTTGCCAGGA 58.445 45.455 8.65 0.00 45.97 3.86
4645 4855 3.007182 CCATCAAATTCAAACCTGCCTGT 59.993 43.478 0.00 0.00 0.00 4.00
4685 4895 1.514678 TAAACACAAGCCTGGCAGCG 61.515 55.000 22.65 10.88 38.01 5.18
4687 4897 1.267806 CTGTAAACACAAGCCTGGCAG 59.732 52.381 22.65 15.30 0.00 4.85
4692 4902 2.851195 CTGGTCTGTAAACACAAGCCT 58.149 47.619 0.00 0.00 0.00 4.58
4693 4903 1.266989 GCTGGTCTGTAAACACAAGCC 59.733 52.381 0.00 0.00 0.00 4.35
4694 4904 1.266989 GGCTGGTCTGTAAACACAAGC 59.733 52.381 0.00 0.00 0.00 4.01
4695 4905 1.880027 GGGCTGGTCTGTAAACACAAG 59.120 52.381 0.00 0.00 0.00 3.16
4696 4906 1.493022 AGGGCTGGTCTGTAAACACAA 59.507 47.619 0.00 0.00 0.00 3.33
4701 4965 0.324943 GCAGAGGGCTGGTCTGTAAA 59.675 55.000 11.78 0.00 43.00 2.01
4714 4978 2.901813 CCTGGCTGAGAGCAGAGG 59.098 66.667 0.00 0.00 44.75 3.69
4719 4983 2.039405 CACAAGCCTGGCTGAGAGC 61.039 63.158 24.16 0.00 39.62 4.09
4796 5060 4.376008 CGCAATACGGTATGTGATAAGTGC 60.376 45.833 0.58 4.51 38.44 4.40
4831 5096 3.087031 CAGATTCCCAGCAGTTGAACAT 58.913 45.455 0.00 0.00 0.00 2.71
4912 5177 9.640963 CCTTATCCTAGACGATAAATACAAAGG 57.359 37.037 0.00 0.00 34.98 3.11
4927 5192 9.429109 AAAAACCAAAGAAAACCTTATCCTAGA 57.571 29.630 0.00 0.00 34.00 2.43
4970 5235 5.406649 ACAACTCTTTTTCGATGCACAAAA 58.593 33.333 0.00 0.00 0.00 2.44
5010 5276 9.243105 TGGACAAAAGGAAAAATCCTCTAATAG 57.757 33.333 0.00 0.00 39.65 1.73
5143 5409 9.000018 GCAGTTAGAACGAAAACATTCATATTC 58.000 33.333 0.00 0.00 0.00 1.75
5217 5484 6.097412 ACTTGAGAAAAAGAGGCAAATTCTGT 59.903 34.615 0.00 0.00 30.89 3.41
5306 5573 9.277783 GCCATGAAATGTATCTACTAGATGTTT 57.722 33.333 8.62 7.07 44.81 2.83
5307 5574 8.432013 TGCCATGAAATGTATCTACTAGATGTT 58.568 33.333 8.62 0.00 44.81 2.71
5308 5575 7.966812 TGCCATGAAATGTATCTACTAGATGT 58.033 34.615 8.62 0.00 44.81 3.06
5309 5576 8.837788 TTGCCATGAAATGTATCTACTAGATG 57.162 34.615 8.62 0.00 44.81 2.90
5310 5577 9.445878 CATTGCCATGAAATGTATCTACTAGAT 57.554 33.333 0.00 3.99 44.81 1.98
5311 5578 8.432013 ACATTGCCATGAAATGTATCTACTAGA 58.568 33.333 19.29 0.00 44.41 2.43
5312 5579 8.613060 ACATTGCCATGAAATGTATCTACTAG 57.387 34.615 19.29 0.00 44.41 2.57
5313 5580 8.978874 AACATTGCCATGAAATGTATCTACTA 57.021 30.769 20.37 0.00 45.25 1.82
5314 5581 7.776969 AGAACATTGCCATGAAATGTATCTACT 59.223 33.333 20.37 13.97 45.25 2.57
5315 5582 7.934457 AGAACATTGCCATGAAATGTATCTAC 58.066 34.615 20.37 12.68 45.25 2.59
5316 5583 7.774625 TGAGAACATTGCCATGAAATGTATCTA 59.225 33.333 20.37 12.47 45.25 1.98
5317 5584 6.604396 TGAGAACATTGCCATGAAATGTATCT 59.396 34.615 20.37 21.11 45.25 1.98
5318 5585 6.798482 TGAGAACATTGCCATGAAATGTATC 58.202 36.000 20.37 19.83 45.25 2.24
5319 5586 6.778834 TGAGAACATTGCCATGAAATGTAT 57.221 33.333 20.37 14.71 45.25 2.29
5320 5587 6.587206 TTGAGAACATTGCCATGAAATGTA 57.413 33.333 20.37 8.07 45.25 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.