Multiple sequence alignment - TraesCS2B01G135000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G135000 chr2B 100.000 3020 0 0 1 3020 101452693 101455712 0.000000e+00 5578.0
1 TraesCS2B01G135000 chr2B 91.045 402 22 4 32 427 101433681 101434074 5.730000e-147 531.0
2 TraesCS2B01G135000 chr2B 90.547 402 24 4 32 427 101419781 101420174 1.240000e-143 520.0
3 TraesCS2B01G135000 chr2B 94.915 177 9 0 427 603 101455107 101454931 8.250000e-71 278.0
4 TraesCS2B01G135000 chr2B 93.478 184 11 1 427 610 765570150 765569968 3.840000e-69 272.0
5 TraesCS2B01G135000 chr2B 92.973 185 13 0 420 604 758149307 758149491 1.380000e-68 270.0
6 TraesCS2B01G135000 chr2B 97.015 134 4 0 2012 2145 101434346 101434213 3.030000e-55 226.0
7 TraesCS2B01G135000 chr2B 80.602 299 47 7 31 325 101072672 101072381 1.410000e-53 220.0
8 TraesCS2B01G135000 chr2B 98.980 98 1 0 2144 2241 101420263 101420166 3.090000e-40 176.0
9 TraesCS2B01G135000 chr2B 98.980 98 1 0 2144 2241 101434163 101434066 3.090000e-40 176.0
10 TraesCS2B01G135000 chr2B 94.845 97 5 0 2049 2145 101420409 101420313 5.210000e-33 152.0
11 TraesCS2B01G135000 chr2D 88.986 1489 75 48 704 2139 68905342 68903890 0.000000e+00 1759.0
12 TraesCS2B01G135000 chr2D 86.290 496 26 20 2567 3020 68905440 68905935 4.490000e-138 501.0
13 TraesCS2B01G135000 chr2D 85.230 413 30 15 32 427 68903374 68903772 2.180000e-106 396.0
14 TraesCS2B01G135000 chr2D 87.087 333 31 7 94 425 69148862 69148541 1.710000e-97 366.0
15 TraesCS2B01G135000 chr2D 91.837 196 14 2 2229 2422 610329858 610329663 3.840000e-69 272.0
16 TraesCS2B01G135000 chr2A 87.932 1417 75 53 763 2145 65814301 65812947 0.000000e+00 1581.0
17 TraesCS2B01G135000 chr2A 84.177 316 19 15 2567 2865 65814438 65814739 8.250000e-71 278.0
18 TraesCS2B01G135000 chr2A 87.500 240 20 3 161 393 65703891 65704127 4.960000e-68 268.0
19 TraesCS2B01G135000 chr2A 91.566 83 2 2 2934 3011 65814874 65814956 3.180000e-20 110.0
20 TraesCS2B01G135000 chr5B 94.565 184 9 1 427 610 346616164 346616346 1.770000e-72 283.0
21 TraesCS2B01G135000 chr5B 94.022 184 10 1 427 609 666300982 666300799 8.250000e-71 278.0
22 TraesCS2B01G135000 chr5B 91.837 196 14 2 2229 2422 84580451 84580256 3.840000e-69 272.0
23 TraesCS2B01G135000 chr5B 91.837 196 14 2 2229 2422 237886833 237886638 3.840000e-69 272.0
24 TraesCS2B01G135000 chr5B 94.656 131 6 1 2419 2549 358816911 358817040 5.110000e-48 202.0
25 TraesCS2B01G135000 chr1B 92.857 196 12 2 2229 2422 174407506 174407311 1.770000e-72 283.0
26 TraesCS2B01G135000 chr1B 92.593 189 13 1 419 607 174407312 174407499 1.380000e-68 270.0
27 TraesCS2B01G135000 chr1B 91.096 146 12 1 2423 2567 335974998 335975143 2.380000e-46 196.0
28 TraesCS2B01G135000 chr1B 100.000 29 0 0 601 629 664973238 664973210 2.000000e-03 54.7
29 TraesCS2B01G135000 chr4D 92.347 196 13 2 2229 2422 329878790 329878595 8.250000e-71 278.0
30 TraesCS2B01G135000 chr4B 92.347 196 13 2 2229 2422 328009099 328009294 8.250000e-71 278.0
31 TraesCS2B01G135000 chr4B 91.837 196 14 2 2229 2422 230258047 230258242 3.840000e-69 272.0
32 TraesCS2B01G135000 chr4B 92.063 189 14 1 419 607 206242718 206242905 6.420000e-67 265.0
33 TraesCS2B01G135000 chr4B 91.667 192 15 1 419 610 328009293 328009103 6.420000e-67 265.0
34 TraesCS2B01G135000 chr4B 91.549 142 10 1 2414 2553 369378377 369378518 8.540000e-46 195.0
35 TraesCS2B01G135000 chr6B 92.746 193 11 3 2226 2417 213152366 213152556 2.970000e-70 276.0
36 TraesCS2B01G135000 chr7B 93.514 185 10 1 427 609 741292076 741291892 1.070000e-69 274.0
37 TraesCS2B01G135000 chr7B 94.574 129 7 0 2423 2551 746124558 746124430 1.840000e-47 200.0
38 TraesCS2B01G135000 chr7B 90.411 146 12 2 2423 2567 86512296 86512152 1.110000e-44 191.0
39 TraesCS2B01G135000 chr6D 91.837 196 14 2 2229 2422 468312458 468312653 3.840000e-69 272.0
40 TraesCS2B01G135000 chr1A 93.985 133 7 1 2417 2549 548441707 548441576 1.840000e-47 200.0
41 TraesCS2B01G135000 chrUn 93.893 131 7 1 2423 2553 23715013 23715142 2.380000e-46 196.0
42 TraesCS2B01G135000 chr6A 91.489 141 9 3 2414 2553 457399489 457399351 1.110000e-44 191.0
43 TraesCS2B01G135000 chr3B 89.933 149 13 2 2420 2567 603872172 603872319 1.110000e-44 191.0
44 TraesCS2B01G135000 chr3B 76.531 294 51 13 1000 1290 738685649 738685371 8.730000e-31 145.0
45 TraesCS2B01G135000 chr3D 77.926 299 50 9 1000 1296 555454752 555454468 4.000000e-39 172.0
46 TraesCS2B01G135000 chr3A 76.923 299 53 9 1000 1296 692607299 692607015 4.030000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G135000 chr2B 101452693 101455712 3019 False 5578.0 5578 100.000 1 3020 1 chr2B.!!$F3 3019
1 TraesCS2B01G135000 chr2D 68903890 68905342 1452 True 1759.0 1759 88.986 704 2139 1 chr2D.!!$R1 1435
2 TraesCS2B01G135000 chr2D 68903374 68905935 2561 False 448.5 501 85.760 32 3020 2 chr2D.!!$F1 2988
3 TraesCS2B01G135000 chr2A 65812947 65814301 1354 True 1581.0 1581 87.932 763 2145 1 chr2A.!!$R1 1382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 719 0.107017 ATGGGTGGCTCGGAATTCAG 60.107 55.0 7.93 3.12 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2394 0.025513 GATCAACTCGATGTGCGTGC 59.974 55.0 0.0 0.0 41.8 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.900547 TGCCATCGATGAGGACTCA 58.099 52.632 26.86 4.26 44.59 3.41
19 20 0.461548 TGCCATCGATGAGGACTCAC 59.538 55.000 26.86 5.95 43.11 3.51
20 21 0.596083 GCCATCGATGAGGACTCACG 60.596 60.000 26.86 7.51 43.11 4.35
21 22 1.025041 CCATCGATGAGGACTCACGA 58.975 55.000 26.86 20.53 43.11 4.35
22 23 1.001924 CCATCGATGAGGACTCACGAG 60.002 57.143 26.86 16.30 43.11 4.18
23 24 1.001924 CATCGATGAGGACTCACGAGG 60.002 57.143 21.02 19.57 43.11 4.63
24 25 1.064946 CGATGAGGACTCACGAGGC 59.935 63.158 3.82 0.00 43.11 4.70
25 26 1.064946 GATGAGGACTCACGAGGCG 59.935 63.158 3.82 0.00 43.11 5.52
26 27 1.377366 GATGAGGACTCACGAGGCGA 61.377 60.000 3.82 0.00 43.11 5.54
27 28 0.753479 ATGAGGACTCACGAGGCGAT 60.753 55.000 3.82 0.00 43.11 4.58
28 29 1.064946 GAGGACTCACGAGGCGATG 59.935 63.158 0.00 0.00 37.31 3.84
29 30 2.105128 GGACTCACGAGGCGATGG 59.895 66.667 0.00 0.00 37.31 3.51
30 31 2.583593 GACTCACGAGGCGATGGC 60.584 66.667 0.00 0.00 38.90 4.40
77 78 0.468029 CCCTGACCACCAAACAGCTT 60.468 55.000 0.00 0.00 0.00 3.74
105 106 1.956629 GCGTCCTGATTTCCTCCCGA 61.957 60.000 0.00 0.00 0.00 5.14
136 137 3.998672 GTTCCGACGTGGCCTCCA 61.999 66.667 3.32 0.00 37.80 3.86
150 151 0.961358 CCTCCAACGACTCCGACTCT 60.961 60.000 0.00 0.00 39.50 3.24
151 152 0.448593 CTCCAACGACTCCGACTCTC 59.551 60.000 0.00 0.00 39.50 3.20
169 176 4.656112 ACTCTCTGAGTTTTTCCTTCTCCA 59.344 41.667 4.32 0.00 40.28 3.86
182 189 0.322975 TTCTCCACCTTGAGCTGCTC 59.677 55.000 22.38 22.38 32.22 4.26
185 192 1.220206 CCACCTTGAGCTGCTCGAT 59.780 57.895 23.35 6.19 32.35 3.59
194 201 4.519437 CTGCTCGATCAGGCGCCA 62.519 66.667 31.54 9.64 0.00 5.69
198 205 1.080230 CTCGATCAGGCGCCATAGG 60.080 63.158 31.54 15.18 0.00 2.57
210 217 0.470833 GCCATAGGCTCTCAGGAGGA 60.471 60.000 0.00 0.00 46.69 3.71
222 229 2.690497 CTCAGGAGGAGCAACTCGATTA 59.310 50.000 0.00 0.00 38.39 1.75
223 230 3.300388 TCAGGAGGAGCAACTCGATTAT 58.700 45.455 0.00 0.00 38.39 1.28
224 231 3.706594 TCAGGAGGAGCAACTCGATTATT 59.293 43.478 0.00 0.00 38.39 1.40
225 232 3.806521 CAGGAGGAGCAACTCGATTATTG 59.193 47.826 0.00 0.00 38.39 1.90
226 233 3.452627 AGGAGGAGCAACTCGATTATTGT 59.547 43.478 6.20 0.00 38.39 2.71
236 243 4.000988 ACTCGATTATTGTTGCGGTTCTT 58.999 39.130 0.00 0.00 0.00 2.52
237 244 4.092968 ACTCGATTATTGTTGCGGTTCTTC 59.907 41.667 0.00 0.00 0.00 2.87
238 245 3.372822 TCGATTATTGTTGCGGTTCTTCC 59.627 43.478 0.00 0.00 0.00 3.46
257 264 2.507058 TCCTCCTTGGATTGGACTGATG 59.493 50.000 0.00 0.00 40.56 3.07
278 285 2.487762 GGCTACTCTCCATCTCGATCTG 59.512 54.545 0.00 0.00 0.00 2.90
280 287 3.436704 GCTACTCTCCATCTCGATCTGAG 59.563 52.174 7.88 7.88 46.72 3.35
284 291 1.612950 CTCCATCTCGATCTGAGGGTG 59.387 57.143 13.39 9.05 45.32 4.61
285 292 1.063642 TCCATCTCGATCTGAGGGTGT 60.064 52.381 13.39 0.00 45.32 4.16
286 293 1.759445 CCATCTCGATCTGAGGGTGTT 59.241 52.381 12.54 0.00 45.32 3.32
287 294 2.169352 CCATCTCGATCTGAGGGTGTTT 59.831 50.000 12.54 0.00 45.32 2.83
288 295 3.452474 CATCTCGATCTGAGGGTGTTTC 58.548 50.000 12.54 0.00 45.32 2.78
289 296 2.808919 TCTCGATCTGAGGGTGTTTCT 58.191 47.619 12.54 0.00 45.32 2.52
290 297 2.755655 TCTCGATCTGAGGGTGTTTCTC 59.244 50.000 12.54 0.00 45.32 2.87
291 298 1.472878 TCGATCTGAGGGTGTTTCTCG 59.527 52.381 0.00 0.00 34.19 4.04
292 299 1.469940 CGATCTGAGGGTGTTTCTCGG 60.470 57.143 0.00 0.00 38.60 4.63
293 300 1.825474 GATCTGAGGGTGTTTCTCGGA 59.175 52.381 5.27 5.27 46.71 4.55
294 301 1.257743 TCTGAGGGTGTTTCTCGGAG 58.742 55.000 0.00 0.00 40.53 4.63
295 302 1.203013 TCTGAGGGTGTTTCTCGGAGA 60.203 52.381 2.97 2.97 40.53 3.71
296 303 0.966920 TGAGGGTGTTTCTCGGAGAC 59.033 55.000 7.33 0.00 34.19 3.36
297 304 1.258676 GAGGGTGTTTCTCGGAGACT 58.741 55.000 7.33 0.00 0.00 3.24
298 305 1.202817 GAGGGTGTTTCTCGGAGACTC 59.797 57.143 7.33 6.28 0.00 3.36
304 317 3.695060 GTGTTTCTCGGAGACTCTGGATA 59.305 47.826 7.33 1.08 0.00 2.59
312 325 2.817258 GGAGACTCTGGATATCACGAGG 59.183 54.545 18.89 6.81 0.00 4.63
327 340 3.415237 GAGGCGATCGATGGATCTG 57.585 57.895 21.57 9.77 45.66 2.90
328 341 0.735632 GAGGCGATCGATGGATCTGC 60.736 60.000 21.57 18.82 45.66 4.26
342 355 2.421877 ATCTGCTCGATTACGGCGGG 62.422 60.000 13.24 0.00 40.08 6.13
345 358 3.912907 CTCGATTACGGCGGGCCT 61.913 66.667 13.24 0.00 40.21 5.19
347 360 4.215742 CGATTACGGCGGGCCTGA 62.216 66.667 18.31 0.00 35.72 3.86
348 361 2.426023 GATTACGGCGGGCCTGAT 59.574 61.111 18.31 0.00 0.00 2.90
349 362 1.961277 GATTACGGCGGGCCTGATG 60.961 63.158 18.31 9.05 0.00 3.07
350 363 3.476031 ATTACGGCGGGCCTGATGG 62.476 63.158 18.31 5.50 0.00 3.51
368 381 0.391263 GGCTGTGGTAGGGTTTCTCG 60.391 60.000 0.00 0.00 0.00 4.04
379 392 1.166129 GGTTTCTCGAAAAGAGGGGC 58.834 55.000 0.00 0.00 46.82 5.80
382 395 0.840722 TTCTCGAAAAGAGGGGCCCT 60.841 55.000 29.30 29.30 46.82 5.19
396 409 2.111792 GGGGCCCTGGGTGATTATTAAT 59.888 50.000 24.38 0.00 0.00 1.40
411 424 8.951243 GTGATTATTAATTCTTATGAGGGGCTC 58.049 37.037 0.00 0.00 0.00 4.70
414 427 0.398318 ATTCTTATGAGGGGCTCGCC 59.602 55.000 0.00 0.00 32.35 5.54
428 445 3.344515 GGCTCGCCCCTTATTATTTAGG 58.655 50.000 0.00 0.00 0.00 2.69
447 464 3.887916 GGGAGTACCTAGGACTCATCT 57.112 52.381 27.98 13.95 44.34 2.90
448 465 4.997545 GGGAGTACCTAGGACTCATCTA 57.002 50.000 27.98 6.37 44.34 1.98
451 468 5.252164 GGGAGTACCTAGGACTCATCTAGAT 59.748 48.000 27.98 0.00 44.34 1.98
453 470 6.134535 AGTACCTAGGACTCATCTAGATGG 57.865 45.833 28.30 21.37 39.24 3.51
454 471 4.396357 ACCTAGGACTCATCTAGATGGG 57.604 50.000 27.78 27.78 44.73 4.00
455 472 3.990933 ACCTAGGACTCATCTAGATGGGA 59.009 47.826 34.39 15.49 41.81 4.37
456 473 4.610256 ACCTAGGACTCATCTAGATGGGAT 59.390 45.833 34.39 22.10 41.81 3.85
457 474 5.798518 ACCTAGGACTCATCTAGATGGGATA 59.201 44.000 34.39 22.05 41.81 2.59
458 475 6.453323 ACCTAGGACTCATCTAGATGGGATAT 59.547 42.308 34.39 21.50 41.81 1.63
459 476 7.633801 ACCTAGGACTCATCTAGATGGGATATA 59.366 40.741 34.39 21.47 41.81 0.86
460 477 8.506921 CCTAGGACTCATCTAGATGGGATATAA 58.493 40.741 34.39 16.32 41.81 0.98
463 480 9.796242 AGGACTCATCTAGATGGGATATAATTT 57.204 33.333 34.39 13.04 41.81 1.82
464 481 9.829507 GGACTCATCTAGATGGGATATAATTTG 57.170 37.037 34.39 7.16 41.81 2.32
465 482 9.829507 GACTCATCTAGATGGGATATAATTTGG 57.170 37.037 34.39 5.22 41.81 3.28
466 483 9.343994 ACTCATCTAGATGGGATATAATTTGGT 57.656 33.333 34.39 8.65 41.81 3.67
467 484 9.829507 CTCATCTAGATGGGATATAATTTGGTC 57.170 37.037 25.93 0.00 41.81 4.02
468 485 9.337714 TCATCTAGATGGGATATAATTTGGTCA 57.662 33.333 28.30 4.12 39.24 4.02
469 486 9.388506 CATCTAGATGGGATATAATTTGGTCAC 57.611 37.037 22.89 0.00 35.24 3.67
470 487 8.504811 TCTAGATGGGATATAATTTGGTCACA 57.495 34.615 0.00 0.00 0.00 3.58
471 488 9.116080 TCTAGATGGGATATAATTTGGTCACAT 57.884 33.333 0.00 2.25 37.42 3.21
472 489 9.745018 CTAGATGGGATATAATTTGGTCACATT 57.255 33.333 3.78 0.00 35.02 2.71
473 490 8.641498 AGATGGGATATAATTTGGTCACATTC 57.359 34.615 3.78 0.00 35.02 2.67
474 491 8.226810 AGATGGGATATAATTTGGTCACATTCA 58.773 33.333 3.78 0.00 35.02 2.57
475 492 7.581213 TGGGATATAATTTGGTCACATTCAC 57.419 36.000 0.00 0.00 0.00 3.18
476 493 7.353525 TGGGATATAATTTGGTCACATTCACT 58.646 34.615 0.00 0.00 0.00 3.41
477 494 7.838696 TGGGATATAATTTGGTCACATTCACTT 59.161 33.333 0.00 0.00 0.00 3.16
478 495 8.695456 GGGATATAATTTGGTCACATTCACTTT 58.305 33.333 0.00 0.00 0.00 2.66
485 502 9.442047 AATTTGGTCACATTCACTTTAAAAACA 57.558 25.926 0.00 0.00 0.00 2.83
486 503 8.833231 TTTGGTCACATTCACTTTAAAAACAA 57.167 26.923 0.00 0.00 0.00 2.83
487 504 8.472683 TTGGTCACATTCACTTTAAAAACAAG 57.527 30.769 0.00 0.00 0.00 3.16
488 505 7.831753 TGGTCACATTCACTTTAAAAACAAGA 58.168 30.769 0.00 0.00 0.00 3.02
489 506 8.307483 TGGTCACATTCACTTTAAAAACAAGAA 58.693 29.630 0.00 0.00 0.00 2.52
490 507 8.592155 GGTCACATTCACTTTAAAAACAAGAAC 58.408 33.333 0.00 0.00 0.00 3.01
491 508 9.134734 GTCACATTCACTTTAAAAACAAGAACA 57.865 29.630 0.00 0.00 0.00 3.18
492 509 9.352784 TCACATTCACTTTAAAAACAAGAACAG 57.647 29.630 0.00 0.00 0.00 3.16
493 510 9.352784 CACATTCACTTTAAAAACAAGAACAGA 57.647 29.630 0.00 0.00 0.00 3.41
505 522 7.765695 AAACAAGAACAGATACAATCCATGT 57.234 32.000 0.00 0.00 46.36 3.21
506 523 6.992063 ACAAGAACAGATACAATCCATGTC 57.008 37.500 0.00 0.00 42.70 3.06
507 524 6.475504 ACAAGAACAGATACAATCCATGTCA 58.524 36.000 0.00 0.00 42.70 3.58
508 525 6.596888 ACAAGAACAGATACAATCCATGTCAG 59.403 38.462 0.00 0.00 42.70 3.51
509 526 5.121811 AGAACAGATACAATCCATGTCAGC 58.878 41.667 0.00 0.00 42.70 4.26
510 527 4.492494 ACAGATACAATCCATGTCAGCA 57.508 40.909 0.00 0.00 42.70 4.41
511 528 4.194640 ACAGATACAATCCATGTCAGCAC 58.805 43.478 0.00 0.00 42.70 4.40
512 529 4.193865 CAGATACAATCCATGTCAGCACA 58.806 43.478 0.00 0.00 42.70 4.57
513 530 4.034858 CAGATACAATCCATGTCAGCACAC 59.965 45.833 0.00 0.00 42.70 3.82
514 531 2.275134 ACAATCCATGTCAGCACACA 57.725 45.000 0.00 0.00 37.96 3.72
515 532 1.881973 ACAATCCATGTCAGCACACAC 59.118 47.619 0.00 0.00 37.96 3.82
516 533 1.135888 CAATCCATGTCAGCACACACG 60.136 52.381 0.00 0.00 34.48 4.49
517 534 1.300971 ATCCATGTCAGCACACACGC 61.301 55.000 0.00 0.00 34.48 5.34
518 535 2.253051 CCATGTCAGCACACACGCA 61.253 57.895 0.00 0.00 34.48 5.24
519 536 1.579964 CCATGTCAGCACACACGCAT 61.580 55.000 0.00 0.00 34.48 4.73
520 537 0.179207 CATGTCAGCACACACGCATC 60.179 55.000 0.00 0.00 34.48 3.91
521 538 0.321034 ATGTCAGCACACACGCATCT 60.321 50.000 0.00 0.00 34.48 2.90
522 539 0.532640 TGTCAGCACACACGCATCTT 60.533 50.000 0.00 0.00 0.00 2.40
523 540 1.270041 TGTCAGCACACACGCATCTTA 60.270 47.619 0.00 0.00 0.00 2.10
524 541 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
525 542 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
526 543 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
527 544 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
528 545 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
529 546 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
530 547 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
531 548 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
532 549 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
533 550 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
534 551 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
535 552 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
536 553 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
537 554 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
538 555 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
539 556 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
540 557 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
541 558 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
542 559 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
543 560 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
544 561 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
545 562 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
546 563 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
547 564 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
548 565 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
549 566 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
550 567 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
551 568 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
552 569 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
553 570 6.905736 TCACATCCAATGGCTATAAAAGGTA 58.094 36.000 0.00 0.00 33.60 3.08
554 571 7.350382 TCACATCCAATGGCTATAAAAGGTAA 58.650 34.615 0.00 0.00 33.60 2.85
555 572 7.836685 TCACATCCAATGGCTATAAAAGGTAAA 59.163 33.333 0.00 0.00 33.60 2.01
556 573 8.641541 CACATCCAATGGCTATAAAAGGTAAAT 58.358 33.333 0.00 0.00 33.60 1.40
557 574 8.641541 ACATCCAATGGCTATAAAAGGTAAATG 58.358 33.333 0.00 0.00 33.60 2.32
558 575 8.859090 CATCCAATGGCTATAAAAGGTAAATGA 58.141 33.333 0.00 0.00 0.00 2.57
559 576 8.463930 TCCAATGGCTATAAAAGGTAAATGAG 57.536 34.615 0.00 0.00 0.00 2.90
560 577 8.278639 TCCAATGGCTATAAAAGGTAAATGAGA 58.721 33.333 0.00 0.00 0.00 3.27
561 578 8.352942 CCAATGGCTATAAAAGGTAAATGAGAC 58.647 37.037 0.00 0.00 0.00 3.36
562 579 8.352942 CAATGGCTATAAAAGGTAAATGAGACC 58.647 37.037 0.00 0.00 37.22 3.85
563 580 6.964464 TGGCTATAAAAGGTAAATGAGACCA 58.036 36.000 0.00 0.00 39.65 4.02
564 581 7.406916 TGGCTATAAAAGGTAAATGAGACCAA 58.593 34.615 0.00 0.00 39.65 3.67
565 582 7.891183 TGGCTATAAAAGGTAAATGAGACCAAA 59.109 33.333 0.00 0.00 39.65 3.28
566 583 8.914011 GGCTATAAAAGGTAAATGAGACCAAAT 58.086 33.333 0.00 0.00 39.65 2.32
670 687 6.555315 TCTCTGTTGTTTCAAAAAGAGAAGC 58.445 36.000 16.62 0.00 37.74 3.86
671 688 6.150976 TCTCTGTTGTTTCAAAAAGAGAAGCA 59.849 34.615 16.62 0.00 37.74 3.91
672 689 6.686630 TCTGTTGTTTCAAAAAGAGAAGCAA 58.313 32.000 0.00 0.00 41.67 3.91
678 695 9.651913 TTGTTTCAAAAAGAGAAGCAACTTATT 57.348 25.926 0.00 0.00 39.95 1.40
679 696 9.301153 TGTTTCAAAAAGAGAAGCAACTTATTC 57.699 29.630 0.00 0.00 34.07 1.75
680 697 9.521503 GTTTCAAAAAGAGAAGCAACTTATTCT 57.478 29.630 0.00 0.00 38.46 2.40
686 703 5.649602 GAGAAGCAACTTATTCTCGATGG 57.350 43.478 0.00 0.00 41.33 3.51
687 704 4.446371 AGAAGCAACTTATTCTCGATGGG 58.554 43.478 0.00 0.00 29.80 4.00
688 705 3.914426 AGCAACTTATTCTCGATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
689 706 3.535561 AGCAACTTATTCTCGATGGGTG 58.464 45.455 0.00 0.00 0.00 4.61
690 707 2.614057 GCAACTTATTCTCGATGGGTGG 59.386 50.000 0.00 0.00 0.00 4.61
691 708 2.614057 CAACTTATTCTCGATGGGTGGC 59.386 50.000 0.00 0.00 0.00 5.01
692 709 2.119495 ACTTATTCTCGATGGGTGGCT 58.881 47.619 0.00 0.00 0.00 4.75
693 710 2.103263 ACTTATTCTCGATGGGTGGCTC 59.897 50.000 0.00 0.00 0.00 4.70
694 711 0.673985 TATTCTCGATGGGTGGCTCG 59.326 55.000 0.00 0.00 36.25 5.03
695 712 2.032860 ATTCTCGATGGGTGGCTCGG 62.033 60.000 0.00 0.00 35.64 4.63
696 713 3.147595 CTCGATGGGTGGCTCGGA 61.148 66.667 0.00 0.00 35.64 4.55
697 714 2.682136 TCGATGGGTGGCTCGGAA 60.682 61.111 0.00 0.00 35.64 4.30
698 715 2.032860 CTCGATGGGTGGCTCGGAAT 62.033 60.000 0.00 0.00 35.64 3.01
699 716 1.153168 CGATGGGTGGCTCGGAATT 60.153 57.895 0.00 0.00 0.00 2.17
700 717 1.160329 CGATGGGTGGCTCGGAATTC 61.160 60.000 0.00 0.00 0.00 2.17
701 718 0.107214 GATGGGTGGCTCGGAATTCA 60.107 55.000 7.93 0.00 0.00 2.57
702 719 0.107017 ATGGGTGGCTCGGAATTCAG 60.107 55.000 7.93 3.12 0.00 3.02
712 729 2.813754 CTCGGAATTCAGAAGTTGCCAA 59.186 45.455 9.61 0.00 0.00 4.52
724 741 4.768968 AGAAGTTGCCAAGCACTATGAATT 59.231 37.500 0.00 0.00 38.71 2.17
739 761 7.040478 GCACTATGAATTCTGTGGGCATAATAA 60.040 37.037 20.00 0.00 0.00 1.40
740 762 9.017509 CACTATGAATTCTGTGGGCATAATAAT 57.982 33.333 7.05 0.00 0.00 1.28
741 763 9.236006 ACTATGAATTCTGTGGGCATAATAATC 57.764 33.333 7.05 0.00 0.00 1.75
742 764 9.458727 CTATGAATTCTGTGGGCATAATAATCT 57.541 33.333 7.05 0.00 0.00 2.40
743 765 8.716674 ATGAATTCTGTGGGCATAATAATCTT 57.283 30.769 7.05 0.00 0.00 2.40
752 774 6.370166 GTGGGCATAATAATCTTACAGCTCTC 59.630 42.308 0.00 0.00 0.00 3.20
756 778 7.087639 GCATAATAATCTTACAGCTCTCGAGT 58.912 38.462 13.13 0.00 0.00 4.18
757 779 8.237949 GCATAATAATCTTACAGCTCTCGAGTA 58.762 37.037 13.13 0.00 0.00 2.59
761 783 3.008330 TCTTACAGCTCTCGAGTACACC 58.992 50.000 13.13 0.00 0.00 4.16
826 849 1.813102 TTTGGAATTTTGGGCCCACT 58.187 45.000 28.70 9.83 0.00 4.00
827 850 1.347062 TTGGAATTTTGGGCCCACTC 58.653 50.000 28.70 18.36 0.00 3.51
828 851 0.544120 TGGAATTTTGGGCCCACTCC 60.544 55.000 28.70 26.36 0.00 3.85
829 852 0.252239 GGAATTTTGGGCCCACTCCT 60.252 55.000 28.70 10.07 0.00 3.69
887 914 2.485124 GCTGCATACCTCTCAGCTTCAT 60.485 50.000 6.24 0.00 46.93 2.57
933 986 5.695851 AATCAAGCACTCCTTACAAGTTG 57.304 39.130 0.00 0.00 31.00 3.16
934 987 2.878406 TCAAGCACTCCTTACAAGTTGC 59.122 45.455 1.81 0.00 31.00 4.17
935 988 2.618241 CAAGCACTCCTTACAAGTTGCA 59.382 45.455 1.81 0.00 31.00 4.08
936 989 2.930950 AGCACTCCTTACAAGTTGCAA 58.069 42.857 1.81 0.00 0.00 4.08
937 990 2.618709 AGCACTCCTTACAAGTTGCAAC 59.381 45.455 22.17 22.17 0.00 4.17
953 1006 6.520272 AGTTGCAACCATCTATCTAGCTTAG 58.480 40.000 25.62 0.00 0.00 2.18
954 1007 6.325028 AGTTGCAACCATCTATCTAGCTTAGA 59.675 38.462 25.62 0.00 39.50 2.10
955 1008 6.731292 TGCAACCATCTATCTAGCTTAGAA 57.269 37.500 0.00 0.00 38.50 2.10
956 1009 6.516718 TGCAACCATCTATCTAGCTTAGAAC 58.483 40.000 0.00 0.00 38.50 3.01
957 1010 6.098266 TGCAACCATCTATCTAGCTTAGAACA 59.902 38.462 0.00 0.00 38.50 3.18
958 1011 6.986817 GCAACCATCTATCTAGCTTAGAACAA 59.013 38.462 0.00 0.00 38.50 2.83
959 1012 7.042389 GCAACCATCTATCTAGCTTAGAACAAC 60.042 40.741 0.00 0.00 38.50 3.32
961 1014 6.841755 ACCATCTATCTAGCTTAGAACAACCT 59.158 38.462 0.00 0.00 38.50 3.50
981 1034 1.217779 GAGTGAGTGAGCTCCAGCC 59.782 63.158 12.15 0.00 43.38 4.85
983 1036 1.217779 GTGAGTGAGCTCCAGCCTC 59.782 63.158 12.15 11.41 43.38 4.70
984 1037 1.986757 TGAGTGAGCTCCAGCCTCC 60.987 63.158 12.15 0.00 43.38 4.30
1812 1916 3.710722 CCGCTCCAAGCCTCTGGT 61.711 66.667 0.00 0.00 38.18 4.00
1848 1952 2.647297 GCGCCTCAAAAAGCAGCT 59.353 55.556 0.00 0.00 0.00 4.24
1854 1958 1.518056 CTCAAAAAGCAGCTGCCGGA 61.518 55.000 34.39 21.82 43.38 5.14
1922 2143 4.687215 CATCGGCGGCGGGATGAT 62.687 66.667 31.73 14.28 42.00 2.45
1923 2144 4.687215 ATCGGCGGCGGGATGATG 62.687 66.667 31.73 0.00 0.00 3.07
2024 2391 1.363080 GGGCGGTGTACTAGCTAGC 59.637 63.158 20.91 6.62 0.00 3.42
2026 2393 1.389609 GGCGGTGTACTAGCTAGCCA 61.390 60.000 20.91 14.41 42.37 4.75
2027 2394 0.030908 GCGGTGTACTAGCTAGCCAG 59.969 60.000 20.91 10.32 0.00 4.85
2139 2525 0.942410 AAACGTCGAGCTAGCGCAAA 60.942 50.000 18.87 2.81 39.10 3.68
2145 2531 1.800315 GAGCTAGCGCAAACGTCGA 60.800 57.895 14.09 0.00 42.83 4.20
2146 2532 1.342082 GAGCTAGCGCAAACGTCGAA 61.342 55.000 14.09 0.00 42.83 3.71
2147 2533 1.057361 GCTAGCGCAAACGTCGAAG 59.943 57.895 11.47 0.00 42.83 3.79
2148 2534 1.615107 GCTAGCGCAAACGTCGAAGT 61.615 55.000 11.47 0.00 42.83 3.01
2149 2535 1.609932 CTAGCGCAAACGTCGAAGTA 58.390 50.000 11.47 0.00 42.83 2.24
2150 2536 1.316735 CTAGCGCAAACGTCGAAGTAC 59.683 52.381 11.47 0.00 42.83 2.73
2151 2537 0.318445 AGCGCAAACGTCGAAGTACT 60.318 50.000 11.47 0.00 42.83 2.73
2152 2538 1.069022 AGCGCAAACGTCGAAGTACTA 60.069 47.619 11.47 0.00 42.83 1.82
2153 2539 1.916000 GCGCAAACGTCGAAGTACTAT 59.084 47.619 3.93 0.00 42.83 2.12
2154 2540 2.035921 GCGCAAACGTCGAAGTACTATC 60.036 50.000 3.93 0.00 42.83 2.08
2155 2541 3.423571 CGCAAACGTCGAAGTACTATCT 58.576 45.455 3.93 0.00 33.53 1.98
2156 2542 3.477802 CGCAAACGTCGAAGTACTATCTC 59.522 47.826 3.93 0.00 33.53 2.75
2157 2543 3.790288 GCAAACGTCGAAGTACTATCTCC 59.210 47.826 3.93 0.00 0.00 3.71
2158 2544 4.349501 CAAACGTCGAAGTACTATCTCCC 58.650 47.826 3.93 0.00 0.00 4.30
2159 2545 2.570135 ACGTCGAAGTACTATCTCCCC 58.430 52.381 0.90 0.00 0.00 4.81
2160 2546 1.530293 CGTCGAAGTACTATCTCCCCG 59.470 57.143 0.00 0.00 0.00 5.73
2161 2547 1.266446 GTCGAAGTACTATCTCCCCGC 59.734 57.143 0.00 0.00 0.00 6.13
2164 2550 1.461911 AAGTACTATCTCCCCGCCGC 61.462 60.000 0.00 0.00 0.00 6.53
2184 2570 2.729491 GCTTTGCGCCCACGTTTC 60.729 61.111 4.18 0.00 42.83 2.78
2185 2571 2.050442 CTTTGCGCCCACGTTTCC 60.050 61.111 4.18 0.00 42.83 3.13
2186 2572 3.872409 CTTTGCGCCCACGTTTCCG 62.872 63.158 4.18 0.00 42.83 4.30
2191 2577 3.284449 GCCCACGTTTCCGCTTGT 61.284 61.111 0.00 0.00 37.70 3.16
2192 2578 2.841160 GCCCACGTTTCCGCTTGTT 61.841 57.895 0.00 0.00 37.70 2.83
2193 2579 1.731093 CCCACGTTTCCGCTTGTTT 59.269 52.632 0.00 0.00 37.70 2.83
2194 2580 0.101579 CCCACGTTTCCGCTTGTTTT 59.898 50.000 0.00 0.00 37.70 2.43
2263 2649 9.944376 AATACAGTTTTGCTAGAACTCATCTAA 57.056 29.630 0.00 0.00 40.12 2.10
2264 2650 9.944376 ATACAGTTTTGCTAGAACTCATCTAAA 57.056 29.630 0.00 0.00 40.12 1.85
2265 2651 8.854614 ACAGTTTTGCTAGAACTCATCTAAAT 57.145 30.769 0.00 0.00 40.12 1.40
2266 2652 8.725148 ACAGTTTTGCTAGAACTCATCTAAATG 58.275 33.333 0.00 0.00 40.12 2.32
2291 2677 9.225682 TGAGATATAATTTGGTCTCCTTTACCT 57.774 33.333 9.69 0.00 37.01 3.08
2314 2700 8.362639 ACCTTTTATAATCATTGGATGTGATGC 58.637 33.333 0.00 0.00 36.49 3.91
2315 2701 8.582437 CCTTTTATAATCATTGGATGTGATGCT 58.418 33.333 0.00 0.00 36.49 3.79
2324 2710 6.373495 TCATTGGATGTGATGCTATAAGATGC 59.627 38.462 0.00 0.00 0.00 3.91
2325 2711 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
2326 2712 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
2327 2713 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
2328 2714 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
2329 2715 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
2330 2716 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
2332 2718 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
2334 2720 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
2337 2723 0.532640 AAGATGCGTGTGTGCTGACA 60.533 50.000 0.00 0.00 35.36 3.58
2339 2725 0.179207 GATGCGTGTGTGCTGACATG 60.179 55.000 0.00 0.00 36.16 3.21
2340 2726 1.579964 ATGCGTGTGTGCTGACATGG 61.580 55.000 0.00 0.00 34.03 3.66
2341 2727 1.960763 GCGTGTGTGCTGACATGGA 60.961 57.895 0.00 0.00 34.03 3.41
2343 2729 1.159285 CGTGTGTGCTGACATGGATT 58.841 50.000 0.00 0.00 33.63 3.01
2344 2730 1.135888 CGTGTGTGCTGACATGGATTG 60.136 52.381 0.00 0.00 33.63 2.67
2345 2731 1.881973 GTGTGTGCTGACATGGATTGT 59.118 47.619 0.00 0.00 42.79 2.71
2346 2732 3.073678 GTGTGTGCTGACATGGATTGTA 58.926 45.455 0.00 0.00 39.18 2.41
2354 3146 6.646240 GTGCTGACATGGATTGTATTTGTTTT 59.354 34.615 0.00 0.00 39.18 2.43
2380 3172 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
2381 3173 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
2387 3179 9.956720 CAAAGTGAATGAGACCAAATTATATCC 57.043 33.333 0.00 0.00 0.00 2.59
2388 3180 8.697507 AAGTGAATGAGACCAAATTATATCCC 57.302 34.615 0.00 0.00 0.00 3.85
2389 3181 7.815383 AGTGAATGAGACCAAATTATATCCCA 58.185 34.615 0.00 0.00 0.00 4.37
2390 3182 8.451245 AGTGAATGAGACCAAATTATATCCCAT 58.549 33.333 0.00 0.00 0.00 4.00
2391 3183 8.734386 GTGAATGAGACCAAATTATATCCCATC 58.266 37.037 0.00 0.00 0.00 3.51
2392 3184 8.672329 TGAATGAGACCAAATTATATCCCATCT 58.328 33.333 0.00 0.00 0.00 2.90
2395 3187 8.972662 TGAGACCAAATTATATCCCATCTAGA 57.027 34.615 0.00 0.00 0.00 2.43
2396 3188 9.566331 TGAGACCAAATTATATCCCATCTAGAT 57.434 33.333 0.00 0.00 0.00 1.98
2397 3189 9.829507 GAGACCAAATTATATCCCATCTAGATG 57.170 37.037 23.53 23.53 38.51 2.90
2398 3190 9.566331 AGACCAAATTATATCCCATCTAGATGA 57.434 33.333 30.40 14.56 41.20 2.92
2399 3191 9.829507 GACCAAATTATATCCCATCTAGATGAG 57.170 37.037 30.40 19.96 41.20 2.90
2400 3192 9.343994 ACCAAATTATATCCCATCTAGATGAGT 57.656 33.333 30.40 18.36 41.20 3.41
2401 3193 9.829507 CCAAATTATATCCCATCTAGATGAGTC 57.170 37.037 30.40 0.00 41.20 3.36
2402 3194 9.829507 CAAATTATATCCCATCTAGATGAGTCC 57.170 37.037 30.40 0.00 41.20 3.85
2403 3195 9.796242 AAATTATATCCCATCTAGATGAGTCCT 57.204 33.333 30.40 15.57 41.20 3.85
2406 3198 4.666412 TCCCATCTAGATGAGTCCTAGG 57.334 50.000 30.40 20.92 41.20 3.02
2407 3199 3.990933 TCCCATCTAGATGAGTCCTAGGT 59.009 47.826 30.40 0.00 41.20 3.08
2408 3200 5.170959 TCCCATCTAGATGAGTCCTAGGTA 58.829 45.833 30.40 10.68 41.20 3.08
2409 3201 5.014333 TCCCATCTAGATGAGTCCTAGGTAC 59.986 48.000 30.40 5.97 41.20 3.34
2410 3202 5.014755 CCCATCTAGATGAGTCCTAGGTACT 59.985 48.000 30.40 10.92 41.20 2.73
2411 3203 6.177610 CCATCTAGATGAGTCCTAGGTACTC 58.822 48.000 30.40 23.77 43.04 2.59
2412 3204 5.829062 TCTAGATGAGTCCTAGGTACTCC 57.171 47.826 25.80 17.10 42.24 3.85
2413 3205 3.887916 AGATGAGTCCTAGGTACTCCC 57.112 52.381 25.80 20.23 42.24 4.30
2414 3206 8.904394 CATCTAGATGAGTCCTAGGTACTCCCT 61.904 48.148 25.78 23.68 43.27 4.20
2415 3207 3.794971 AGATGAGTCCTAGGTACTCCCTT 59.205 47.826 25.80 16.64 42.73 3.95
2416 3208 4.233287 AGATGAGTCCTAGGTACTCCCTTT 59.767 45.833 25.80 15.01 42.73 3.11
2417 3209 4.415224 TGAGTCCTAGGTACTCCCTTTT 57.585 45.455 25.80 3.92 42.73 2.27
2418 3210 5.541258 TGAGTCCTAGGTACTCCCTTTTA 57.459 43.478 25.80 12.42 42.73 1.52
2419 3211 6.101274 TGAGTCCTAGGTACTCCCTTTTAT 57.899 41.667 25.80 2.84 42.73 1.40
2420 3212 7.229951 TGAGTCCTAGGTACTCCCTTTTATA 57.770 40.000 25.80 11.44 42.73 0.98
2421 3213 7.834046 TGAGTCCTAGGTACTCCCTTTTATAT 58.166 38.462 25.80 1.93 42.73 0.86
2422 3214 8.294690 TGAGTCCTAGGTACTCCCTTTTATATT 58.705 37.037 25.80 0.00 42.73 1.28
2423 3215 9.819754 GAGTCCTAGGTACTCCCTTTTATATTA 57.180 37.037 21.61 0.00 42.73 0.98
2424 3216 9.599056 AGTCCTAGGTACTCCCTTTTATATTAC 57.401 37.037 9.08 0.00 42.73 1.89
2425 3217 9.599056 GTCCTAGGTACTCCCTTTTATATTACT 57.401 37.037 9.08 0.00 42.73 2.24
2426 3218 9.819754 TCCTAGGTACTCCCTTTTATATTACTC 57.180 37.037 9.08 0.00 42.73 2.59
2427 3219 9.033711 CCTAGGTACTCCCTTTTATATTACTCC 57.966 40.741 0.00 0.00 42.73 3.85
2428 3220 7.868792 AGGTACTCCCTTTTATATTACTCCC 57.131 40.000 0.00 0.00 42.73 4.30
2429 3221 7.612179 AGGTACTCCCTTTTATATTACTCCCT 58.388 38.462 0.00 0.00 42.73 4.20
2430 3222 7.733955 AGGTACTCCCTTTTATATTACTCCCTC 59.266 40.741 0.00 0.00 42.73 4.30
2431 3223 7.038445 GGTACTCCCTTTTATATTACTCCCTCC 60.038 44.444 0.00 0.00 0.00 4.30
2432 3224 5.543020 ACTCCCTTTTATATTACTCCCTCCG 59.457 44.000 0.00 0.00 0.00 4.63
2433 3225 5.470501 TCCCTTTTATATTACTCCCTCCGT 58.529 41.667 0.00 0.00 0.00 4.69
2434 3226 5.541484 TCCCTTTTATATTACTCCCTCCGTC 59.459 44.000 0.00 0.00 0.00 4.79
2435 3227 5.279859 CCCTTTTATATTACTCCCTCCGTCC 60.280 48.000 0.00 0.00 0.00 4.79
2436 3228 5.458041 TTTTATATTACTCCCTCCGTCCG 57.542 43.478 0.00 0.00 0.00 4.79
2437 3229 2.965671 ATATTACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
2438 3230 2.734755 TATTACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
2439 3231 1.856629 ATTACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2440 3232 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
2441 3233 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2442 3234 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2443 3235 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2444 3236 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2445 3237 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2446 3238 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2447 3239 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2448 3240 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2449 3241 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2450 3242 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2451 3243 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2452 3244 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2453 3245 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2454 3246 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2455 3247 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2456 3248 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2457 3249 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2458 3250 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
2459 3251 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
2460 3252 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
2525 3317 7.411486 TTCCTTTTTGTCTATTTTGGTGACA 57.589 32.000 0.00 0.00 38.71 3.58
2539 3331 4.822036 TGGTGACAAGTATTTTTGGACG 57.178 40.909 0.00 0.00 37.44 4.79
2540 3332 3.566322 TGGTGACAAGTATTTTTGGACGG 59.434 43.478 0.00 0.00 37.44 4.79
2541 3333 3.816523 GGTGACAAGTATTTTTGGACGGA 59.183 43.478 0.00 0.00 32.32 4.69
2542 3334 4.083484 GGTGACAAGTATTTTTGGACGGAG 60.083 45.833 0.00 0.00 32.32 4.63
2543 3335 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
2544 3336 4.202377 TGACAAGTATTTTTGGACGGAGGA 60.202 41.667 0.00 0.00 32.32 3.71
2545 3337 4.721132 ACAAGTATTTTTGGACGGAGGAA 58.279 39.130 0.00 0.00 32.32 3.36
2546 3338 4.760204 ACAAGTATTTTTGGACGGAGGAAG 59.240 41.667 0.00 0.00 32.32 3.46
2547 3339 4.635699 AGTATTTTTGGACGGAGGAAGT 57.364 40.909 0.00 0.00 0.00 3.01
2548 3340 5.750352 AGTATTTTTGGACGGAGGAAGTA 57.250 39.130 0.00 0.00 0.00 2.24
2549 3341 6.309389 AGTATTTTTGGACGGAGGAAGTAT 57.691 37.500 0.00 0.00 0.00 2.12
2550 3342 7.427989 AGTATTTTTGGACGGAGGAAGTATA 57.572 36.000 0.00 0.00 0.00 1.47
2551 3343 8.030913 AGTATTTTTGGACGGAGGAAGTATAT 57.969 34.615 0.00 0.00 0.00 0.86
2552 3344 7.931948 AGTATTTTTGGACGGAGGAAGTATATG 59.068 37.037 0.00 0.00 0.00 1.78
2553 3345 4.682778 TTTGGACGGAGGAAGTATATGG 57.317 45.455 0.00 0.00 0.00 2.74
2554 3346 2.605257 TGGACGGAGGAAGTATATGGG 58.395 52.381 0.00 0.00 0.00 4.00
2555 3347 2.178325 TGGACGGAGGAAGTATATGGGA 59.822 50.000 0.00 0.00 0.00 4.37
2556 3348 2.561858 GGACGGAGGAAGTATATGGGAC 59.438 54.545 0.00 0.00 0.00 4.46
2557 3349 2.228343 GACGGAGGAAGTATATGGGACG 59.772 54.545 0.00 0.00 0.00 4.79
2558 3350 1.544691 CGGAGGAAGTATATGGGACGG 59.455 57.143 0.00 0.00 0.00 4.79
2559 3351 2.816712 CGGAGGAAGTATATGGGACGGA 60.817 54.545 0.00 0.00 0.00 4.69
2560 3352 2.826725 GGAGGAAGTATATGGGACGGAG 59.173 54.545 0.00 0.00 0.00 4.63
2561 3353 2.826725 GAGGAAGTATATGGGACGGAGG 59.173 54.545 0.00 0.00 0.00 4.30
2562 3354 1.900486 GGAAGTATATGGGACGGAGGG 59.100 57.143 0.00 0.00 0.00 4.30
2563 3355 2.492196 GGAAGTATATGGGACGGAGGGA 60.492 54.545 0.00 0.00 0.00 4.20
2564 3356 2.606751 AGTATATGGGACGGAGGGAG 57.393 55.000 0.00 0.00 0.00 4.30
2565 3357 1.787676 AGTATATGGGACGGAGGGAGT 59.212 52.381 0.00 0.00 0.00 3.85
2587 3379 7.307455 GGAGTACTAAACTGCTTCAAAGTTCAG 60.307 40.741 0.00 0.00 42.92 3.02
2590 3382 6.349300 ACTAAACTGCTTCAAAGTTCAGAGA 58.651 36.000 4.91 0.00 36.87 3.10
2592 3384 4.679373 ACTGCTTCAAAGTTCAGAGAGA 57.321 40.909 4.91 0.00 0.00 3.10
2595 3387 5.219343 TGCTTCAAAGTTCAGAGAGATGA 57.781 39.130 0.00 0.00 0.00 2.92
2622 3414 2.896044 TCTTGTTTGCATGCATGGGTTA 59.104 40.909 27.34 1.46 0.00 2.85
2651 3446 8.670521 TGTGGATAACTGGATATACATGATCT 57.329 34.615 0.00 0.00 29.10 2.75
2667 3462 7.071069 ACATGATCTAACTATGCATCTCCAA 57.929 36.000 0.19 0.00 0.00 3.53
2700 3495 7.384115 GTGCATGTCAGTTAAAGTTCTACTACA 59.616 37.037 0.00 0.00 0.00 2.74
2731 3529 7.988904 AGTTATCAACTCTACGAGCATAAAC 57.011 36.000 0.00 0.00 37.02 2.01
2742 3540 3.863424 ACGAGCATAAACGTACATCCAAG 59.137 43.478 0.00 0.00 40.92 3.61
2746 3544 3.861113 GCATAAACGTACATCCAAGACGA 59.139 43.478 0.06 0.00 39.81 4.20
2775 3573 3.663176 GGCTGCGTGCACACATGT 61.663 61.111 18.64 0.00 45.15 3.21
2790 3592 6.322712 TGCACACATGTCACCATATAGTAGTA 59.677 38.462 0.00 0.00 0.00 1.82
2794 3596 9.064706 ACACATGTCACCATATAGTAGTACTAC 57.935 37.037 23.03 23.03 32.84 2.73
2800 3602 6.712095 TCACCATATAGTAGTACTACGTTGGG 59.288 42.308 29.40 25.78 40.80 4.12
2878 3705 2.809446 TCACCTTCGACATTCGCATAG 58.191 47.619 0.00 0.00 40.21 2.23
2879 3706 1.258982 CACCTTCGACATTCGCATAGC 59.741 52.381 0.00 0.00 40.21 2.97
2904 3731 1.375523 CGTTCCTGTCCGGGAAAGG 60.376 63.158 25.24 25.24 45.55 3.11
2959 3791 2.878406 CACTTGACCAACTTTGACCGAT 59.122 45.455 0.00 0.00 0.00 4.18
2966 3798 5.129650 TGACCAACTTTGACCGATATGGATA 59.870 40.000 0.00 0.00 42.00 2.59
2967 3799 6.183361 TGACCAACTTTGACCGATATGGATAT 60.183 38.462 0.00 0.00 42.00 1.63
2969 3801 6.710744 ACCAACTTTGACCGATATGGATATTC 59.289 38.462 0.00 0.00 42.00 1.75
2970 3802 6.128553 CCAACTTTGACCGATATGGATATTCG 60.129 42.308 0.00 0.00 42.00 3.34
2972 3804 5.926542 ACTTTGACCGATATGGATATTCGTG 59.073 40.000 0.00 0.00 42.00 4.35
2983 3820 2.037772 GGATATTCGTGACCTCCATGCT 59.962 50.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.461548 GTGAGTCCTCATCGATGGCA 59.538 55.000 24.61 6.09 42.18 4.92
1 2 0.596083 CGTGAGTCCTCATCGATGGC 60.596 60.000 24.61 12.59 42.18 4.40
2 3 1.001924 CTCGTGAGTCCTCATCGATGG 60.002 57.143 24.61 14.95 42.18 3.51
3 4 1.001924 CCTCGTGAGTCCTCATCGATG 60.002 57.143 19.61 19.61 42.18 3.84
4 5 1.313772 CCTCGTGAGTCCTCATCGAT 58.686 55.000 16.50 0.00 42.18 3.59
5 6 1.377366 GCCTCGTGAGTCCTCATCGA 61.377 60.000 15.78 15.78 42.18 3.59
6 7 1.064946 GCCTCGTGAGTCCTCATCG 59.935 63.158 0.00 6.61 42.18 3.84
7 8 1.064946 CGCCTCGTGAGTCCTCATC 59.935 63.158 0.00 0.00 42.18 2.92
8 9 0.753479 ATCGCCTCGTGAGTCCTCAT 60.753 55.000 0.00 0.00 42.18 2.90
9 10 1.378646 ATCGCCTCGTGAGTCCTCA 60.379 57.895 0.00 0.00 37.24 3.86
10 11 1.064946 CATCGCCTCGTGAGTCCTC 59.935 63.158 0.00 0.00 0.00 3.71
11 12 2.418910 CCATCGCCTCGTGAGTCCT 61.419 63.158 0.00 0.00 0.00 3.85
12 13 2.105128 CCATCGCCTCGTGAGTCC 59.895 66.667 0.00 0.00 0.00 3.85
13 14 2.583593 GCCATCGCCTCGTGAGTC 60.584 66.667 0.00 0.00 0.00 3.36
14 15 4.498520 CGCCATCGCCTCGTGAGT 62.499 66.667 0.00 0.00 0.00 3.41
53 54 0.476771 GTTTGGTGGTCAGGGAGGAA 59.523 55.000 0.00 0.00 0.00 3.36
136 137 1.270947 ACTCAGAGAGTCGGAGTCGTT 60.271 52.381 3.79 0.00 46.33 3.85
150 151 3.716872 AGGTGGAGAAGGAAAAACTCAGA 59.283 43.478 0.00 0.00 33.00 3.27
151 152 4.092116 AGGTGGAGAAGGAAAAACTCAG 57.908 45.455 0.00 0.00 33.00 3.35
169 176 0.175302 CTGATCGAGCAGCTCAAGGT 59.825 55.000 18.91 2.77 0.00 3.50
182 189 2.740055 GCCTATGGCGCCTGATCG 60.740 66.667 29.70 9.69 39.62 3.69
194 201 0.560193 TGCTCCTCCTGAGAGCCTAT 59.440 55.000 10.05 0.00 44.42 2.57
198 205 0.175531 GAGTTGCTCCTCCTGAGAGC 59.824 60.000 5.82 5.82 44.42 4.09
204 211 3.452627 ACAATAATCGAGTTGCTCCTCCT 59.547 43.478 0.00 0.00 0.00 3.69
222 229 1.073923 AGGAGGAAGAACCGCAACAAT 59.926 47.619 0.00 0.00 44.74 2.71
223 230 0.472471 AGGAGGAAGAACCGCAACAA 59.528 50.000 0.00 0.00 44.74 2.83
224 231 0.472471 AAGGAGGAAGAACCGCAACA 59.528 50.000 0.00 0.00 44.74 3.33
225 232 0.875059 CAAGGAGGAAGAACCGCAAC 59.125 55.000 0.00 0.00 44.74 4.17
226 233 0.250727 CCAAGGAGGAAGAACCGCAA 60.251 55.000 0.00 0.00 44.74 4.85
237 244 2.422519 CCATCAGTCCAATCCAAGGAGG 60.423 54.545 0.00 0.00 35.42 4.30
238 245 2.928334 CCATCAGTCCAATCCAAGGAG 58.072 52.381 0.00 0.00 35.42 3.69
257 264 2.487762 CAGATCGAGATGGAGAGTAGCC 59.512 54.545 0.00 0.00 0.00 3.93
273 280 1.825474 TCCGAGAAACACCCTCAGATC 59.175 52.381 0.00 0.00 0.00 2.75
278 285 1.202817 GAGTCTCCGAGAAACACCCTC 59.797 57.143 0.00 0.00 0.00 4.30
280 287 1.067495 CAGAGTCTCCGAGAAACACCC 60.067 57.143 0.00 0.00 0.00 4.61
284 291 4.580995 TGATATCCAGAGTCTCCGAGAAAC 59.419 45.833 0.00 0.00 0.00 2.78
285 292 4.580995 GTGATATCCAGAGTCTCCGAGAAA 59.419 45.833 0.00 0.00 0.00 2.52
286 293 4.138290 GTGATATCCAGAGTCTCCGAGAA 58.862 47.826 0.00 0.00 0.00 2.87
287 294 3.745799 GTGATATCCAGAGTCTCCGAGA 58.254 50.000 0.00 0.00 0.00 4.04
288 295 2.482336 CGTGATATCCAGAGTCTCCGAG 59.518 54.545 0.00 0.00 0.00 4.63
289 296 2.104281 TCGTGATATCCAGAGTCTCCGA 59.896 50.000 0.00 0.00 0.00 4.55
290 297 2.482336 CTCGTGATATCCAGAGTCTCCG 59.518 54.545 13.42 0.00 0.00 4.63
291 298 2.817258 CCTCGTGATATCCAGAGTCTCC 59.183 54.545 17.76 0.00 0.00 3.71
292 299 2.227865 GCCTCGTGATATCCAGAGTCTC 59.772 54.545 17.76 0.00 0.00 3.36
293 300 2.235016 GCCTCGTGATATCCAGAGTCT 58.765 52.381 17.76 0.00 0.00 3.24
294 301 1.068885 CGCCTCGTGATATCCAGAGTC 60.069 57.143 17.76 8.77 0.00 3.36
295 302 0.955178 CGCCTCGTGATATCCAGAGT 59.045 55.000 17.76 0.00 0.00 3.24
296 303 1.239347 TCGCCTCGTGATATCCAGAG 58.761 55.000 14.27 14.27 0.00 3.35
297 304 1.813178 GATCGCCTCGTGATATCCAGA 59.187 52.381 0.00 0.00 32.57 3.86
298 305 1.466529 CGATCGCCTCGTGATATCCAG 60.467 57.143 0.26 0.00 42.56 3.86
321 334 1.004277 CGCCGTAATCGAGCAGATCC 61.004 60.000 0.00 0.00 38.98 3.36
328 341 3.912907 AGGCCCGCCGTAATCGAG 61.913 66.667 0.00 0.00 41.95 4.04
344 357 0.620556 AACCCTACCACAGCCATCAG 59.379 55.000 0.00 0.00 0.00 2.90
345 358 1.004277 GAAACCCTACCACAGCCATCA 59.996 52.381 0.00 0.00 0.00 3.07
347 360 1.282157 GAGAAACCCTACCACAGCCAT 59.718 52.381 0.00 0.00 0.00 4.40
348 361 0.690762 GAGAAACCCTACCACAGCCA 59.309 55.000 0.00 0.00 0.00 4.75
349 362 0.391263 CGAGAAACCCTACCACAGCC 60.391 60.000 0.00 0.00 0.00 4.85
350 363 0.606604 TCGAGAAACCCTACCACAGC 59.393 55.000 0.00 0.00 0.00 4.40
351 364 3.396260 TTTCGAGAAACCCTACCACAG 57.604 47.619 0.00 0.00 0.00 3.66
352 365 3.388676 TCTTTTCGAGAAACCCTACCACA 59.611 43.478 0.00 0.00 0.00 4.17
353 366 3.995048 CTCTTTTCGAGAAACCCTACCAC 59.005 47.826 0.00 0.00 42.62 4.16
354 367 3.007614 CCTCTTTTCGAGAAACCCTACCA 59.992 47.826 0.00 0.00 42.62 3.25
368 381 2.360585 CCCAGGGCCCCTCTTTTC 59.639 66.667 21.43 0.00 0.00 2.29
379 392 9.236006 CTCATAAGAATTAATAATCACCCAGGG 57.764 37.037 2.85 2.85 32.17 4.45
382 395 8.170061 CCCCTCATAAGAATTAATAATCACCCA 58.830 37.037 0.00 0.00 32.17 4.51
396 409 1.830145 GGCGAGCCCCTCATAAGAA 59.170 57.895 1.97 0.00 0.00 2.52
427 444 3.887916 AGATGAGTCCTAGGTACTCCC 57.112 52.381 25.80 20.23 42.24 4.30
428 445 5.829062 TCTAGATGAGTCCTAGGTACTCC 57.171 47.826 25.80 17.10 42.24 3.85
429 446 6.177610 CCATCTAGATGAGTCCTAGGTACTC 58.822 48.000 30.40 23.77 43.04 2.59
430 447 5.014755 CCCATCTAGATGAGTCCTAGGTACT 59.985 48.000 30.40 10.92 41.20 2.73
431 448 5.014333 TCCCATCTAGATGAGTCCTAGGTAC 59.986 48.000 30.40 5.97 41.20 3.34
432 449 5.170959 TCCCATCTAGATGAGTCCTAGGTA 58.829 45.833 30.40 10.68 41.20 3.08
434 451 4.666412 TCCCATCTAGATGAGTCCTAGG 57.334 50.000 30.40 20.92 41.20 3.02
439 456 9.829507 CCAAATTATATCCCATCTAGATGAGTC 57.170 37.037 30.40 0.00 41.20 3.36
440 457 9.343994 ACCAAATTATATCCCATCTAGATGAGT 57.656 33.333 30.40 18.36 41.20 3.41
441 458 9.829507 GACCAAATTATATCCCATCTAGATGAG 57.170 37.037 30.40 19.96 41.20 2.90
442 459 9.337714 TGACCAAATTATATCCCATCTAGATGA 57.662 33.333 30.40 14.56 41.20 2.92
443 460 9.388506 GTGACCAAATTATATCCCATCTAGATG 57.611 37.037 23.53 23.53 38.51 2.90
444 461 9.116080 TGTGACCAAATTATATCCCATCTAGAT 57.884 33.333 0.00 0.00 0.00 1.98
446 463 9.745018 AATGTGACCAAATTATATCCCATCTAG 57.255 33.333 0.00 0.00 0.00 2.43
447 464 9.739276 GAATGTGACCAAATTATATCCCATCTA 57.261 33.333 0.00 0.00 0.00 1.98
448 465 8.226810 TGAATGTGACCAAATTATATCCCATCT 58.773 33.333 0.00 0.00 0.00 2.90
451 468 7.353525 AGTGAATGTGACCAAATTATATCCCA 58.646 34.615 0.00 0.00 0.00 4.37
459 476 9.442047 TGTTTTTAAAGTGAATGTGACCAAATT 57.558 25.926 0.00 0.00 0.00 1.82
460 477 9.442047 TTGTTTTTAAAGTGAATGTGACCAAAT 57.558 25.926 0.00 0.00 0.00 2.32
461 478 8.833231 TTGTTTTTAAAGTGAATGTGACCAAA 57.167 26.923 0.00 0.00 0.00 3.28
462 479 8.307483 TCTTGTTTTTAAAGTGAATGTGACCAA 58.693 29.630 0.00 0.00 0.00 3.67
463 480 7.831753 TCTTGTTTTTAAAGTGAATGTGACCA 58.168 30.769 0.00 0.00 0.00 4.02
464 481 8.592155 GTTCTTGTTTTTAAAGTGAATGTGACC 58.408 33.333 0.00 0.00 0.00 4.02
465 482 9.134734 TGTTCTTGTTTTTAAAGTGAATGTGAC 57.865 29.630 0.00 0.00 0.00 3.67
466 483 9.352784 CTGTTCTTGTTTTTAAAGTGAATGTGA 57.647 29.630 0.00 0.00 0.00 3.58
467 484 9.352784 TCTGTTCTTGTTTTTAAAGTGAATGTG 57.647 29.630 0.00 0.00 0.00 3.21
479 496 8.641541 ACATGGATTGTATCTGTTCTTGTTTTT 58.358 29.630 0.00 0.00 36.57 1.94
480 497 8.181904 ACATGGATTGTATCTGTTCTTGTTTT 57.818 30.769 0.00 0.00 36.57 2.43
481 498 7.448161 TGACATGGATTGTATCTGTTCTTGTTT 59.552 33.333 0.00 0.00 39.18 2.83
482 499 6.942005 TGACATGGATTGTATCTGTTCTTGTT 59.058 34.615 0.00 0.00 39.18 2.83
483 500 6.475504 TGACATGGATTGTATCTGTTCTTGT 58.524 36.000 0.00 0.00 39.18 3.16
484 501 6.457934 GCTGACATGGATTGTATCTGTTCTTG 60.458 42.308 0.00 0.00 39.18 3.02
485 502 5.587844 GCTGACATGGATTGTATCTGTTCTT 59.412 40.000 0.00 0.00 39.18 2.52
486 503 5.121811 GCTGACATGGATTGTATCTGTTCT 58.878 41.667 0.00 0.00 39.18 3.01
487 504 4.877823 TGCTGACATGGATTGTATCTGTTC 59.122 41.667 0.00 0.00 39.18 3.18
488 505 4.637534 GTGCTGACATGGATTGTATCTGTT 59.362 41.667 0.00 0.00 39.18 3.16
489 506 4.194640 GTGCTGACATGGATTGTATCTGT 58.805 43.478 0.00 0.00 39.18 3.41
490 507 4.034858 GTGTGCTGACATGGATTGTATCTG 59.965 45.833 0.00 0.00 39.18 2.90
491 508 4.194640 GTGTGCTGACATGGATTGTATCT 58.805 43.478 0.00 0.00 39.18 1.98
492 509 3.940852 TGTGTGCTGACATGGATTGTATC 59.059 43.478 0.00 0.00 39.18 2.24
493 510 3.691118 GTGTGTGCTGACATGGATTGTAT 59.309 43.478 0.00 0.00 39.18 2.29
494 511 3.073678 GTGTGTGCTGACATGGATTGTA 58.926 45.455 0.00 0.00 39.18 2.41
495 512 1.881973 GTGTGTGCTGACATGGATTGT 59.118 47.619 0.00 0.00 42.79 2.71
496 513 1.135888 CGTGTGTGCTGACATGGATTG 60.136 52.381 0.00 0.00 33.63 2.67
497 514 1.159285 CGTGTGTGCTGACATGGATT 58.841 50.000 0.00 0.00 33.63 3.01
498 515 1.300971 GCGTGTGTGCTGACATGGAT 61.301 55.000 0.00 0.00 34.03 3.41
499 516 1.960763 GCGTGTGTGCTGACATGGA 60.961 57.895 0.00 0.00 34.03 3.41
500 517 1.579964 ATGCGTGTGTGCTGACATGG 61.580 55.000 0.00 0.00 34.03 3.66
501 518 0.179207 GATGCGTGTGTGCTGACATG 60.179 55.000 0.00 0.00 36.16 3.21
502 519 0.321034 AGATGCGTGTGTGCTGACAT 60.321 50.000 0.00 0.00 33.63 3.06
503 520 0.532640 AAGATGCGTGTGTGCTGACA 60.533 50.000 0.00 0.00 35.36 3.58
504 521 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
505 522 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
506 523 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
507 524 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
508 525 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
509 526 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
510 527 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
511 528 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
512 529 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
513 530 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
514 531 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
515 532 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
516 533 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
517 534 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
518 535 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
519 536 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
520 537 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
521 538 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
522 539 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
523 540 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
524 541 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
525 542 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
526 543 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
527 544 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
528 545 6.376248 ACCTTTTATAGCCATTGGATGTGAT 58.624 36.000 6.95 0.00 0.00 3.06
529 546 5.765510 ACCTTTTATAGCCATTGGATGTGA 58.234 37.500 6.95 0.00 0.00 3.58
530 547 7.581213 TTACCTTTTATAGCCATTGGATGTG 57.419 36.000 6.95 0.00 0.00 3.21
531 548 8.641541 CATTTACCTTTTATAGCCATTGGATGT 58.358 33.333 6.95 0.10 0.00 3.06
532 549 8.859090 TCATTTACCTTTTATAGCCATTGGATG 58.141 33.333 6.95 0.00 0.00 3.51
533 550 9.082313 CTCATTTACCTTTTATAGCCATTGGAT 57.918 33.333 6.95 1.78 0.00 3.41
534 551 8.278639 TCTCATTTACCTTTTATAGCCATTGGA 58.721 33.333 6.95 0.00 0.00 3.53
535 552 8.352942 GTCTCATTTACCTTTTATAGCCATTGG 58.647 37.037 0.00 0.00 0.00 3.16
536 553 8.352942 GGTCTCATTTACCTTTTATAGCCATTG 58.647 37.037 0.00 0.00 33.97 2.82
537 554 8.058847 TGGTCTCATTTACCTTTTATAGCCATT 58.941 33.333 0.00 0.00 37.91 3.16
538 555 7.582719 TGGTCTCATTTACCTTTTATAGCCAT 58.417 34.615 0.00 0.00 37.91 4.40
539 556 6.964464 TGGTCTCATTTACCTTTTATAGCCA 58.036 36.000 0.00 0.00 37.91 4.75
540 557 7.875327 TTGGTCTCATTTACCTTTTATAGCC 57.125 36.000 0.00 0.00 37.91 3.93
644 661 7.704047 GCTTCTCTTTTTGAAACAACAGAGAAT 59.296 33.333 22.03 0.00 39.45 2.40
645 662 7.029563 GCTTCTCTTTTTGAAACAACAGAGAA 58.970 34.615 21.25 21.25 38.38 2.87
646 663 6.150976 TGCTTCTCTTTTTGAAACAACAGAGA 59.849 34.615 13.83 13.83 0.00 3.10
647 664 6.324819 TGCTTCTCTTTTTGAAACAACAGAG 58.675 36.000 0.00 0.00 0.00 3.35
648 665 6.266168 TGCTTCTCTTTTTGAAACAACAGA 57.734 33.333 0.00 0.00 0.00 3.41
649 666 6.587608 AGTTGCTTCTCTTTTTGAAACAACAG 59.412 34.615 18.46 0.00 45.37 3.16
650 667 6.454795 AGTTGCTTCTCTTTTTGAAACAACA 58.545 32.000 18.46 0.00 45.37 3.33
654 671 9.521503 AGAATAAGTTGCTTCTCTTTTTGAAAC 57.478 29.630 0.00 0.00 0.00 2.78
658 675 7.576236 TCGAGAATAAGTTGCTTCTCTTTTTG 58.424 34.615 19.53 9.83 43.32 2.44
664 681 4.509600 CCCATCGAGAATAAGTTGCTTCTC 59.490 45.833 15.14 15.14 42.49 2.87
669 686 2.614057 CCACCCATCGAGAATAAGTTGC 59.386 50.000 0.00 0.00 0.00 4.17
670 687 2.614057 GCCACCCATCGAGAATAAGTTG 59.386 50.000 0.00 0.00 0.00 3.16
671 688 2.505819 AGCCACCCATCGAGAATAAGTT 59.494 45.455 0.00 0.00 0.00 2.66
672 689 2.103263 GAGCCACCCATCGAGAATAAGT 59.897 50.000 0.00 0.00 0.00 2.24
673 690 2.760374 GAGCCACCCATCGAGAATAAG 58.240 52.381 0.00 0.00 0.00 1.73
674 691 1.068588 CGAGCCACCCATCGAGAATAA 59.931 52.381 0.00 0.00 41.40 1.40
675 692 0.673985 CGAGCCACCCATCGAGAATA 59.326 55.000 0.00 0.00 41.40 1.75
676 693 1.443407 CGAGCCACCCATCGAGAAT 59.557 57.895 0.00 0.00 41.40 2.40
677 694 2.721167 CCGAGCCACCCATCGAGAA 61.721 63.158 0.00 0.00 41.40 2.87
678 695 3.147595 CCGAGCCACCCATCGAGA 61.148 66.667 0.00 0.00 41.40 4.04
679 696 2.032860 ATTCCGAGCCACCCATCGAG 62.033 60.000 0.00 0.00 41.40 4.04
680 697 1.622607 AATTCCGAGCCACCCATCGA 61.623 55.000 0.00 0.00 41.40 3.59
681 698 1.153168 AATTCCGAGCCACCCATCG 60.153 57.895 0.00 0.00 38.65 3.84
682 699 0.107214 TGAATTCCGAGCCACCCATC 60.107 55.000 2.27 0.00 0.00 3.51
683 700 0.107017 CTGAATTCCGAGCCACCCAT 60.107 55.000 2.27 0.00 0.00 4.00
684 701 1.198094 TCTGAATTCCGAGCCACCCA 61.198 55.000 2.27 0.00 0.00 4.51
685 702 0.035439 TTCTGAATTCCGAGCCACCC 60.035 55.000 2.27 0.00 0.00 4.61
686 703 1.339151 ACTTCTGAATTCCGAGCCACC 60.339 52.381 2.27 0.00 0.00 4.61
687 704 2.100605 ACTTCTGAATTCCGAGCCAC 57.899 50.000 2.27 0.00 0.00 5.01
688 705 2.426522 CAACTTCTGAATTCCGAGCCA 58.573 47.619 2.27 0.00 0.00 4.75
689 706 1.131315 GCAACTTCTGAATTCCGAGCC 59.869 52.381 2.27 0.00 0.00 4.70
690 707 1.131315 GGCAACTTCTGAATTCCGAGC 59.869 52.381 2.27 1.91 0.00 5.03
691 708 2.426522 TGGCAACTTCTGAATTCCGAG 58.573 47.619 2.27 0.89 37.61 4.63
692 709 2.559698 TGGCAACTTCTGAATTCCGA 57.440 45.000 2.27 0.00 37.61 4.55
693 710 2.669391 GCTTGGCAACTTCTGAATTCCG 60.669 50.000 2.27 0.00 37.61 4.30
694 711 2.297033 TGCTTGGCAACTTCTGAATTCC 59.703 45.455 2.27 0.00 34.76 3.01
695 712 3.005155 AGTGCTTGGCAACTTCTGAATTC 59.995 43.478 0.00 0.00 41.47 2.17
696 713 2.961062 AGTGCTTGGCAACTTCTGAATT 59.039 40.909 0.00 0.00 41.47 2.17
697 714 2.590821 AGTGCTTGGCAACTTCTGAAT 58.409 42.857 0.00 0.00 41.47 2.57
698 715 2.057137 AGTGCTTGGCAACTTCTGAA 57.943 45.000 0.00 0.00 41.47 3.02
699 716 2.928801 TAGTGCTTGGCAACTTCTGA 57.071 45.000 0.00 0.00 41.47 3.27
700 717 3.076621 TCATAGTGCTTGGCAACTTCTG 58.923 45.455 0.00 0.00 41.47 3.02
701 718 3.423539 TCATAGTGCTTGGCAACTTCT 57.576 42.857 0.00 0.00 41.47 2.85
702 719 4.708726 ATTCATAGTGCTTGGCAACTTC 57.291 40.909 0.00 0.00 41.47 3.01
712 729 2.025981 TGCCCACAGAATTCATAGTGCT 60.026 45.455 8.44 0.00 0.00 4.40
724 741 5.997746 GCTGTAAGATTATTATGCCCACAGA 59.002 40.000 0.00 0.00 34.07 3.41
739 761 3.628487 GGTGTACTCGAGAGCTGTAAGAT 59.372 47.826 21.68 0.00 34.07 2.40
740 762 3.008330 GGTGTACTCGAGAGCTGTAAGA 58.992 50.000 21.68 0.00 34.07 2.10
741 763 2.223066 CGGTGTACTCGAGAGCTGTAAG 60.223 54.545 21.68 0.00 0.00 2.34
742 764 1.736126 CGGTGTACTCGAGAGCTGTAA 59.264 52.381 21.68 0.00 0.00 2.41
743 765 1.338484 ACGGTGTACTCGAGAGCTGTA 60.338 52.381 21.68 0.00 0.00 2.74
752 774 1.274596 GGTTGCATACGGTGTACTCG 58.725 55.000 7.45 7.45 0.00 4.18
756 778 0.391927 GGCTGGTTGCATACGGTGTA 60.392 55.000 0.00 0.00 45.15 2.90
757 779 1.674322 GGCTGGTTGCATACGGTGT 60.674 57.895 0.00 0.00 45.15 4.16
761 783 3.202001 CCGGGCTGGTTGCATACG 61.202 66.667 3.48 0.00 45.15 3.06
816 839 2.610859 GAGGAGGAGTGGGCCCAA 60.611 66.667 30.64 8.18 0.00 4.12
826 849 3.090888 TGTATAGGAGGAGGAGGAGGA 57.909 52.381 0.00 0.00 0.00 3.71
827 850 4.626771 CGTATGTATAGGAGGAGGAGGAGG 60.627 54.167 0.00 0.00 0.00 4.30
828 851 4.519213 CGTATGTATAGGAGGAGGAGGAG 58.481 52.174 0.00 0.00 0.00 3.69
829 852 3.308259 GCGTATGTATAGGAGGAGGAGGA 60.308 52.174 0.00 0.00 0.00 3.71
887 914 2.441717 TGCTGGTGTGGCTTTGCA 60.442 55.556 0.00 0.00 0.00 4.08
917 970 2.287608 GGTTGCAACTTGTAAGGAGTGC 60.288 50.000 27.64 3.83 34.80 4.40
922 975 5.882557 AGATAGATGGTTGCAACTTGTAAGG 59.117 40.000 27.64 0.00 0.00 2.69
924 977 6.538742 GCTAGATAGATGGTTGCAACTTGTAA 59.461 38.462 27.64 12.33 0.00 2.41
925 978 6.049149 GCTAGATAGATGGTTGCAACTTGTA 58.951 40.000 27.64 17.99 0.00 2.41
928 981 5.365021 AGCTAGATAGATGGTTGCAACTT 57.635 39.130 27.64 16.29 0.00 2.66
931 984 6.731292 TCTAAGCTAGATAGATGGTTGCAA 57.269 37.500 0.00 0.00 0.00 4.08
932 985 6.098266 TGTTCTAAGCTAGATAGATGGTTGCA 59.902 38.462 0.00 0.00 34.22 4.08
933 986 6.516718 TGTTCTAAGCTAGATAGATGGTTGC 58.483 40.000 0.00 0.00 34.22 4.17
934 987 7.439655 GGTTGTTCTAAGCTAGATAGATGGTTG 59.560 40.741 0.00 0.00 34.22 3.77
935 988 7.345914 AGGTTGTTCTAAGCTAGATAGATGGTT 59.654 37.037 0.00 0.00 34.22 3.67
936 989 6.841755 AGGTTGTTCTAAGCTAGATAGATGGT 59.158 38.462 0.00 0.00 34.22 3.55
937 990 7.296628 AGGTTGTTCTAAGCTAGATAGATGG 57.703 40.000 0.00 0.00 34.22 3.51
953 1006 3.257127 AGCTCACTCACTCTAGGTTGTTC 59.743 47.826 0.00 0.00 0.00 3.18
954 1007 3.235200 AGCTCACTCACTCTAGGTTGTT 58.765 45.455 0.00 0.00 0.00 2.83
955 1008 2.823154 GAGCTCACTCACTCTAGGTTGT 59.177 50.000 9.40 0.00 42.93 3.32
956 1009 2.165437 GGAGCTCACTCACTCTAGGTTG 59.835 54.545 17.19 0.00 45.42 3.77
957 1010 2.225142 TGGAGCTCACTCACTCTAGGTT 60.225 50.000 17.19 0.00 45.42 3.50
958 1011 1.356059 TGGAGCTCACTCACTCTAGGT 59.644 52.381 17.19 0.00 45.42 3.08
959 1012 2.023673 CTGGAGCTCACTCACTCTAGG 58.976 57.143 17.19 0.00 45.42 3.02
961 1014 1.468985 GCTGGAGCTCACTCACTCTA 58.531 55.000 17.19 0.00 45.42 2.43
981 1034 0.463204 TGCTAGCTGCTTAGCTGGAG 59.537 55.000 17.23 9.79 44.67 3.86
983 1036 1.227639 CATGCTAGCTGCTTAGCTGG 58.772 55.000 17.23 9.89 45.81 4.85
984 1037 1.227639 CCATGCTAGCTGCTTAGCTG 58.772 55.000 17.23 18.42 45.81 4.24
1454 1513 0.401105 ATGAGGATGAGGGTGAGGGG 60.401 60.000 0.00 0.00 0.00 4.79
1457 1516 0.249784 CGCATGAGGATGAGGGTGAG 60.250 60.000 0.00 0.00 0.00 3.51
1458 1517 1.825341 CGCATGAGGATGAGGGTGA 59.175 57.895 0.00 0.00 0.00 4.02
1461 1520 2.281345 GGCGCATGAGGATGAGGG 60.281 66.667 10.83 0.00 30.48 4.30
1501 1572 4.742201 TTCCTCGTGAGCGGCAGC 62.742 66.667 0.00 0.00 45.58 5.25
1502 1573 2.507992 CTTCCTCGTGAGCGGCAG 60.508 66.667 1.45 0.00 35.48 4.85
1513 1584 1.444553 CGACGTGGTGCTCTTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
1514 1585 2.143594 GACGACGTGGTGCTCTTCCT 62.144 60.000 8.32 0.00 0.00 3.36
1515 1586 1.733399 GACGACGTGGTGCTCTTCC 60.733 63.158 8.32 0.00 0.00 3.46
1917 2138 2.281070 ATGTCGCCGGCCATCATC 60.281 61.111 23.46 5.56 0.00 2.92
1918 2139 2.401699 ATCATGTCGCCGGCCATCAT 62.402 55.000 23.46 19.14 0.00 2.45
1919 2140 3.105686 ATCATGTCGCCGGCCATCA 62.106 57.895 23.46 17.66 0.00 3.07
1920 2141 2.281070 ATCATGTCGCCGGCCATC 60.281 61.111 23.46 12.06 0.00 3.51
1921 2142 2.592574 CATCATGTCGCCGGCCAT 60.593 61.111 23.46 16.97 0.00 4.40
1922 2143 4.094646 ACATCATGTCGCCGGCCA 62.095 61.111 23.46 15.13 0.00 5.36
1923 2144 3.272334 GACATCATGTCGCCGGCC 61.272 66.667 23.46 8.57 37.67 6.13
2024 2391 2.029288 AACTCGATGTGCGTGCTGG 61.029 57.895 0.00 0.00 41.80 4.85
2026 2393 0.390340 ATCAACTCGATGTGCGTGCT 60.390 50.000 0.00 0.00 41.80 4.40
2027 2394 0.025513 GATCAACTCGATGTGCGTGC 59.974 55.000 0.00 0.00 41.80 5.34
2030 2397 1.633561 AGTGATCAACTCGATGTGCG 58.366 50.000 0.00 0.00 42.69 5.34
2031 2398 5.725110 AATAAGTGATCAACTCGATGTGC 57.275 39.130 0.00 0.00 38.56 4.57
2032 2399 9.642312 CAATTAATAAGTGATCAACTCGATGTG 57.358 33.333 0.00 0.00 38.56 3.21
2139 2525 2.570135 GGGGAGATAGTACTTCGACGT 58.430 52.381 0.00 0.00 0.00 4.34
2145 2531 1.461911 GCGGCGGGGAGATAGTACTT 61.462 60.000 9.78 0.00 0.00 2.24
2146 2532 1.902432 GCGGCGGGGAGATAGTACT 60.902 63.158 9.78 0.00 0.00 2.73
2147 2533 2.649614 GCGGCGGGGAGATAGTAC 59.350 66.667 9.78 0.00 0.00 2.73
2148 2534 2.981909 CGCGGCGGGGAGATAGTA 60.982 66.667 15.84 0.00 0.00 1.82
2168 2554 2.050442 GGAAACGTGGGCGCAAAG 60.050 61.111 10.83 5.43 42.83 2.77
2237 2623 9.944376 TTAGATGAGTTCTAGCAAAACTGTATT 57.056 29.630 0.32 0.00 38.19 1.89
2238 2624 9.944376 TTTAGATGAGTTCTAGCAAAACTGTAT 57.056 29.630 0.32 0.00 38.19 2.29
2239 2625 9.944376 ATTTAGATGAGTTCTAGCAAAACTGTA 57.056 29.630 0.32 0.00 38.19 2.74
2240 2626 8.725148 CATTTAGATGAGTTCTAGCAAAACTGT 58.275 33.333 0.32 0.00 38.19 3.55
2241 2627 8.939929 TCATTTAGATGAGTTCTAGCAAAACTG 58.060 33.333 0.32 0.00 38.19 3.16
2265 2651 9.225682 AGGTAAAGGAGACCAAATTATATCTCA 57.774 33.333 12.36 0.00 39.52 3.27
2288 2674 8.362639 GCATCACATCCAATGATTATAAAAGGT 58.637 33.333 0.00 0.00 34.49 3.50
2289 2675 8.582437 AGCATCACATCCAATGATTATAAAAGG 58.418 33.333 0.00 0.00 34.49 3.11
2297 2683 8.957466 CATCTTATAGCATCACATCCAATGATT 58.043 33.333 0.00 0.00 34.49 2.57
2298 2684 7.067129 GCATCTTATAGCATCACATCCAATGAT 59.933 37.037 0.00 0.00 37.27 2.45
2299 2685 6.373495 GCATCTTATAGCATCACATCCAATGA 59.627 38.462 0.00 0.00 0.00 2.57
2301 2687 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
2302 2688 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
2303 2689 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
2306 2692 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
2307 2693 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
2308 2694 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
2309 2695 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
2310 2696 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
2312 2698 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
2313 2699 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
2314 2700 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
2315 2701 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
2316 2702 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
2317 2703 1.270041 TGTCAGCACACACGCATCTTA 60.270 47.619 0.00 0.00 0.00 2.10
2318 2704 0.532640 TGTCAGCACACACGCATCTT 60.533 50.000 0.00 0.00 0.00 2.40
2319 2705 0.321034 ATGTCAGCACACACGCATCT 60.321 50.000 0.00 0.00 34.48 2.90
2320 2706 0.179207 CATGTCAGCACACACGCATC 60.179 55.000 0.00 0.00 34.48 3.91
2321 2707 1.579964 CCATGTCAGCACACACGCAT 61.580 55.000 0.00 0.00 34.48 4.73
2322 2708 2.253051 CCATGTCAGCACACACGCA 61.253 57.895 0.00 0.00 34.48 5.24
2324 2710 1.135888 CAATCCATGTCAGCACACACG 60.136 52.381 0.00 0.00 34.48 4.49
2325 2711 1.881973 ACAATCCATGTCAGCACACAC 59.118 47.619 0.00 0.00 37.96 3.82
2326 2712 2.275134 ACAATCCATGTCAGCACACA 57.725 45.000 0.00 0.00 37.96 3.72
2327 2713 4.970662 AATACAATCCATGTCAGCACAC 57.029 40.909 0.00 0.00 42.70 3.82
2328 2714 4.766373 ACAAATACAATCCATGTCAGCACA 59.234 37.500 0.00 0.00 42.70 4.57
2329 2715 5.314923 ACAAATACAATCCATGTCAGCAC 57.685 39.130 0.00 0.00 42.70 4.40
2330 2716 5.981088 AACAAATACAATCCATGTCAGCA 57.019 34.783 0.00 0.00 42.70 4.41
2332 2718 8.592105 ACAAAAACAAATACAATCCATGTCAG 57.408 30.769 0.00 0.00 42.70 3.51
2354 3146 6.522625 TGGTCTCATTCACTTTGAAAACAA 57.477 33.333 0.00 0.00 40.12 2.83
2361 3153 9.956720 GGATATAATTTGGTCTCATTCACTTTG 57.043 33.333 0.00 0.00 0.00 2.77
2362 3154 9.136323 GGGATATAATTTGGTCTCATTCACTTT 57.864 33.333 0.00 0.00 0.00 2.66
2365 3157 8.641498 ATGGGATATAATTTGGTCTCATTCAC 57.359 34.615 0.00 0.00 27.57 3.18
2366 3158 8.672329 AGATGGGATATAATTTGGTCTCATTCA 58.328 33.333 1.96 0.00 32.20 2.57
2369 3161 9.566331 TCTAGATGGGATATAATTTGGTCTCAT 57.434 33.333 0.00 0.31 34.63 2.90
2370 3162 8.972662 TCTAGATGGGATATAATTTGGTCTCA 57.027 34.615 0.00 0.00 0.00 3.27
2371 3163 9.829507 CATCTAGATGGGATATAATTTGGTCTC 57.170 37.037 22.89 0.00 35.24 3.36
2373 3165 9.829507 CTCATCTAGATGGGATATAATTTGGTC 57.170 37.037 25.93 0.00 41.81 4.02
2374 3166 9.343994 ACTCATCTAGATGGGATATAATTTGGT 57.656 33.333 34.39 8.65 41.81 3.67
2375 3167 9.829507 GACTCATCTAGATGGGATATAATTTGG 57.170 37.037 34.39 5.22 41.81 3.28
2380 3172 8.506921 CCTAGGACTCATCTAGATGGGATATAA 58.493 40.741 34.39 16.32 41.81 0.98
2381 3173 7.633801 ACCTAGGACTCATCTAGATGGGATATA 59.366 40.741 34.39 21.47 41.81 0.86
2383 3175 5.798518 ACCTAGGACTCATCTAGATGGGATA 59.201 44.000 34.39 22.05 41.81 2.59
2384 3176 4.610256 ACCTAGGACTCATCTAGATGGGAT 59.390 45.833 34.39 22.10 41.81 3.85
2385 3177 3.990933 ACCTAGGACTCATCTAGATGGGA 59.009 47.826 34.39 15.49 41.81 4.37
2386 3178 4.396357 ACCTAGGACTCATCTAGATGGG 57.604 50.000 27.78 27.78 44.73 4.00
2387 3179 6.134535 AGTACCTAGGACTCATCTAGATGG 57.865 45.833 28.30 21.37 39.24 3.51
2388 3180 6.177610 GGAGTACCTAGGACTCATCTAGATG 58.822 48.000 27.98 24.32 44.34 2.90
2389 3181 5.252164 GGGAGTACCTAGGACTCATCTAGAT 59.748 48.000 27.98 0.00 44.34 1.98
2390 3182 4.598373 GGGAGTACCTAGGACTCATCTAGA 59.402 50.000 27.98 0.00 44.34 2.43
2391 3183 4.913784 GGGAGTACCTAGGACTCATCTAG 58.086 52.174 27.98 0.00 44.34 2.43
2392 3184 4.997545 GGGAGTACCTAGGACTCATCTA 57.002 50.000 27.98 6.37 44.34 1.98
2393 3185 3.887916 GGGAGTACCTAGGACTCATCT 57.112 52.381 27.98 13.95 44.34 2.90
2405 3197 7.038445 GGAGGGAGTAATATAAAAGGGAGTACC 60.038 44.444 0.00 0.00 40.67 3.34
2406 3198 7.309683 CGGAGGGAGTAATATAAAAGGGAGTAC 60.310 44.444 0.00 0.00 0.00 2.73
2407 3199 6.723052 CGGAGGGAGTAATATAAAAGGGAGTA 59.277 42.308 0.00 0.00 0.00 2.59
2408 3200 5.543020 CGGAGGGAGTAATATAAAAGGGAGT 59.457 44.000 0.00 0.00 0.00 3.85
2409 3201 5.543020 ACGGAGGGAGTAATATAAAAGGGAG 59.457 44.000 0.00 0.00 0.00 4.30
2410 3202 5.470501 ACGGAGGGAGTAATATAAAAGGGA 58.529 41.667 0.00 0.00 0.00 4.20
2411 3203 5.279859 GGACGGAGGGAGTAATATAAAAGGG 60.280 48.000 0.00 0.00 0.00 3.95
2412 3204 5.566230 CGGACGGAGGGAGTAATATAAAAGG 60.566 48.000 0.00 0.00 0.00 3.11
2413 3205 5.242393 TCGGACGGAGGGAGTAATATAAAAG 59.758 44.000 0.00 0.00 0.00 2.27
2414 3206 5.139727 TCGGACGGAGGGAGTAATATAAAA 58.860 41.667 0.00 0.00 0.00 1.52
2415 3207 4.728772 TCGGACGGAGGGAGTAATATAAA 58.271 43.478 0.00 0.00 0.00 1.40
2416 3208 4.371624 TCGGACGGAGGGAGTAATATAA 57.628 45.455 0.00 0.00 0.00 0.98
2417 3209 4.371624 TTCGGACGGAGGGAGTAATATA 57.628 45.455 0.00 0.00 0.00 0.86
2418 3210 2.965671 TCGGACGGAGGGAGTAATAT 57.034 50.000 0.00 0.00 0.00 1.28
2419 3211 2.734755 TTCGGACGGAGGGAGTAATA 57.265 50.000 0.00 0.00 0.00 0.98
2420 3212 1.856629 TTTCGGACGGAGGGAGTAAT 58.143 50.000 0.00 0.00 0.00 1.89
2421 3213 1.631405 TTTTCGGACGGAGGGAGTAA 58.369 50.000 0.00 0.00 0.00 2.24
2422 3214 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2423 3215 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2424 3216 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2425 3217 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2426 3218 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2427 3219 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2428 3220 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2429 3221 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2430 3222 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2431 3223 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2432 3224 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
2433 3225 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
2434 3226 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
2499 3291 9.137459 TGTCACCAAAATAGACAAAAAGGAATA 57.863 29.630 0.00 0.00 39.15 1.75
2500 3292 8.017418 TGTCACCAAAATAGACAAAAAGGAAT 57.983 30.769 0.00 0.00 39.15 3.01
2501 3293 7.411486 TGTCACCAAAATAGACAAAAAGGAA 57.589 32.000 0.00 0.00 39.15 3.36
2502 3294 7.411486 TTGTCACCAAAATAGACAAAAAGGA 57.589 32.000 4.90 0.00 45.95 3.36
2509 3301 9.743057 CAAAAATACTTGTCACCAAAATAGACA 57.257 29.630 0.00 0.00 40.24 3.41
2510 3302 9.191995 CCAAAAATACTTGTCACCAAAATAGAC 57.808 33.333 0.00 0.00 0.00 2.59
2511 3303 9.137459 TCCAAAAATACTTGTCACCAAAATAGA 57.863 29.630 0.00 0.00 0.00 1.98
2512 3304 9.191995 GTCCAAAAATACTTGTCACCAAAATAG 57.808 33.333 0.00 0.00 0.00 1.73
2513 3305 7.863375 CGTCCAAAAATACTTGTCACCAAAATA 59.137 33.333 0.00 0.00 0.00 1.40
2514 3306 6.699642 CGTCCAAAAATACTTGTCACCAAAAT 59.300 34.615 0.00 0.00 0.00 1.82
2515 3307 6.037098 CGTCCAAAAATACTTGTCACCAAAA 58.963 36.000 0.00 0.00 0.00 2.44
2516 3308 5.450688 CCGTCCAAAAATACTTGTCACCAAA 60.451 40.000 0.00 0.00 0.00 3.28
2517 3309 4.036971 CCGTCCAAAAATACTTGTCACCAA 59.963 41.667 0.00 0.00 0.00 3.67
2518 3310 3.566322 CCGTCCAAAAATACTTGTCACCA 59.434 43.478 0.00 0.00 0.00 4.17
2519 3311 3.816523 TCCGTCCAAAAATACTTGTCACC 59.183 43.478 0.00 0.00 0.00 4.02
2520 3312 4.083484 CCTCCGTCCAAAAATACTTGTCAC 60.083 45.833 0.00 0.00 0.00 3.67
2521 3313 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
2522 3314 4.320870 TCCTCCGTCCAAAAATACTTGTC 58.679 43.478 0.00 0.00 0.00 3.18
2523 3315 4.360951 TCCTCCGTCCAAAAATACTTGT 57.639 40.909 0.00 0.00 0.00 3.16
2524 3316 4.760204 ACTTCCTCCGTCCAAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
2525 3317 4.981812 ACTTCCTCCGTCCAAAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
2526 3318 4.635699 ACTTCCTCCGTCCAAAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
2527 3319 7.172703 CCATATACTTCCTCCGTCCAAAAATAC 59.827 40.741 0.00 0.00 0.00 1.89
2528 3320 7.221450 CCATATACTTCCTCCGTCCAAAAATA 58.779 38.462 0.00 0.00 0.00 1.40
2529 3321 6.062095 CCATATACTTCCTCCGTCCAAAAAT 58.938 40.000 0.00 0.00 0.00 1.82
2530 3322 5.433526 CCATATACTTCCTCCGTCCAAAAA 58.566 41.667 0.00 0.00 0.00 1.94
2531 3323 4.141574 CCCATATACTTCCTCCGTCCAAAA 60.142 45.833 0.00 0.00 0.00 2.44
2532 3324 3.389983 CCCATATACTTCCTCCGTCCAAA 59.610 47.826 0.00 0.00 0.00 3.28
2533 3325 2.969950 CCCATATACTTCCTCCGTCCAA 59.030 50.000 0.00 0.00 0.00 3.53
2534 3326 2.178325 TCCCATATACTTCCTCCGTCCA 59.822 50.000 0.00 0.00 0.00 4.02
2535 3327 2.561858 GTCCCATATACTTCCTCCGTCC 59.438 54.545 0.00 0.00 0.00 4.79
2536 3328 2.228343 CGTCCCATATACTTCCTCCGTC 59.772 54.545 0.00 0.00 0.00 4.79
2537 3329 2.236766 CGTCCCATATACTTCCTCCGT 58.763 52.381 0.00 0.00 0.00 4.69
2538 3330 1.544691 CCGTCCCATATACTTCCTCCG 59.455 57.143 0.00 0.00 0.00 4.63
2539 3331 2.826725 CTCCGTCCCATATACTTCCTCC 59.173 54.545 0.00 0.00 0.00 4.30
2540 3332 2.826725 CCTCCGTCCCATATACTTCCTC 59.173 54.545 0.00 0.00 0.00 3.71
2541 3333 2.492940 CCCTCCGTCCCATATACTTCCT 60.493 54.545 0.00 0.00 0.00 3.36
2542 3334 1.900486 CCCTCCGTCCCATATACTTCC 59.100 57.143 0.00 0.00 0.00 3.46
2543 3335 2.826725 CTCCCTCCGTCCCATATACTTC 59.173 54.545 0.00 0.00 0.00 3.01
2544 3336 2.179424 ACTCCCTCCGTCCCATATACTT 59.821 50.000 0.00 0.00 0.00 2.24
2545 3337 1.787676 ACTCCCTCCGTCCCATATACT 59.212 52.381 0.00 0.00 0.00 2.12
2546 3338 2.305858 ACTCCCTCCGTCCCATATAC 57.694 55.000 0.00 0.00 0.00 1.47
2547 3339 2.991713 AGTACTCCCTCCGTCCCATATA 59.008 50.000 0.00 0.00 0.00 0.86
2548 3340 1.787676 AGTACTCCCTCCGTCCCATAT 59.212 52.381 0.00 0.00 0.00 1.78
2549 3341 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2550 3342 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2551 3343 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2552 3344 1.753649 GTTTAGTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
2553 3345 2.426381 CAGTTTAGTACTCCCTCCGTCC 59.574 54.545 0.00 0.00 33.85 4.79
2554 3346 2.159268 GCAGTTTAGTACTCCCTCCGTC 60.159 54.545 0.00 0.00 33.85 4.79
2555 3347 1.823610 GCAGTTTAGTACTCCCTCCGT 59.176 52.381 0.00 0.00 33.85 4.69
2556 3348 2.100989 AGCAGTTTAGTACTCCCTCCG 58.899 52.381 0.00 0.00 33.85 4.63
2557 3349 3.514309 TGAAGCAGTTTAGTACTCCCTCC 59.486 47.826 0.00 0.00 33.85 4.30
2558 3350 4.803098 TGAAGCAGTTTAGTACTCCCTC 57.197 45.455 0.00 0.00 33.85 4.30
2559 3351 5.071923 ACTTTGAAGCAGTTTAGTACTCCCT 59.928 40.000 0.00 0.00 33.85 4.20
2560 3352 5.306394 ACTTTGAAGCAGTTTAGTACTCCC 58.694 41.667 0.00 0.00 33.85 4.30
2561 3353 6.482308 TGAACTTTGAAGCAGTTTAGTACTCC 59.518 38.462 0.00 0.00 34.49 3.85
2562 3354 7.438459 TCTGAACTTTGAAGCAGTTTAGTACTC 59.562 37.037 0.00 0.00 38.44 2.59
2563 3355 7.272978 TCTGAACTTTGAAGCAGTTTAGTACT 58.727 34.615 0.00 0.00 38.44 2.73
2564 3356 7.438459 TCTCTGAACTTTGAAGCAGTTTAGTAC 59.562 37.037 5.82 0.00 38.44 2.73
2565 3357 7.497595 TCTCTGAACTTTGAAGCAGTTTAGTA 58.502 34.615 5.82 0.00 38.44 1.82
2592 3384 4.401202 TGCATGCAAACAAGAGATGATCAT 59.599 37.500 20.30 8.25 0.00 2.45
2595 3387 4.441495 CCATGCATGCAAACAAGAGATGAT 60.441 41.667 26.68 0.00 0.00 2.45
2602 3394 2.172851 AACCCATGCATGCAAACAAG 57.827 45.000 26.68 14.07 0.00 3.16
2622 3414 6.747414 TGTATATCCAGTTATCCACAGCTT 57.253 37.500 0.00 0.00 0.00 3.74
2667 3462 2.645838 AACTGACATGCACACTCCTT 57.354 45.000 0.00 0.00 0.00 3.36
2718 3516 4.603985 TGGATGTACGTTTATGCTCGTAG 58.396 43.478 0.00 0.00 41.90 3.51
2731 3529 2.981805 TCGTTTTCGTCTTGGATGTACG 59.018 45.455 0.00 0.00 44.46 3.67
2742 3540 2.378084 GCCCTCGGTCGTTTTCGTC 61.378 63.158 0.00 0.00 44.46 4.20
2746 3544 2.668550 GCAGCCCTCGGTCGTTTT 60.669 61.111 0.00 0.00 0.00 2.43
2775 3573 6.712095 CCCAACGTAGTACTACTATATGGTGA 59.288 42.308 26.36 0.00 45.00 4.02
2794 3596 0.670546 CTCAGTGGCACTACCCAACG 60.671 60.000 21.59 6.17 36.46 4.10
2800 3602 0.321122 AAGCAGCTCAGTGGCACTAC 60.321 55.000 21.59 12.83 34.17 2.73
2880 3707 2.511600 CGGACAGGAACGGATGCC 60.512 66.667 0.00 0.00 0.00 4.40
2886 3713 1.375523 CCTTTCCCGGACAGGAACG 60.376 63.158 13.80 0.00 45.65 3.95
2904 3731 1.436983 CTCCATTTAACCGCGGGCTC 61.437 60.000 31.76 0.00 0.00 4.70
2959 3791 4.322725 GCATGGAGGTCACGAATATCCATA 60.323 45.833 4.79 0.00 46.52 2.74
2966 3798 3.768633 GAGCATGGAGGTCACGAAT 57.231 52.632 0.00 0.00 44.14 3.34
2972 3804 2.107953 GCCGAGAGCATGGAGGTC 59.892 66.667 0.00 0.00 45.07 3.85
3002 3839 3.075005 GCTCCTGGCCGTAGTCCA 61.075 66.667 0.00 0.00 31.01 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.