Multiple sequence alignment - TraesCS2B01G134900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G134900 chr2B 100.000 4479 0 0 1 4479 101442101 101437623 0.000000e+00 8272.0
1 TraesCS2B01G134900 chr2B 94.421 1900 92 10 2584 4478 100919207 100917317 0.000000e+00 2909.0
2 TraesCS2B01G134900 chr2B 96.706 1275 21 3 3206 4479 101428154 101426900 0.000000e+00 2102.0
3 TraesCS2B01G134900 chr2B 95.496 977 25 6 963 1939 101415751 101414794 0.000000e+00 1543.0
4 TraesCS2B01G134900 chr2B 90.198 908 54 13 1033 1933 100921159 100920280 0.000000e+00 1151.0
5 TraesCS2B01G134900 chr2B 99.156 474 3 1 2 474 101428627 101428154 0.000000e+00 852.0
6 TraesCS2B01G134900 chr2B 99.135 347 3 0 314 660 101416094 101415748 3.800000e-175 625.0
7 TraesCS2B01G134900 chr2B 98.833 257 2 1 1 256 101416380 101416124 1.470000e-124 457.0
8 TraesCS2B01G134900 chr2B 81.752 274 42 8 1617 1889 100849253 100848987 5.830000e-54 222.0
9 TraesCS2B01G134900 chr2B 90.769 130 11 1 488 616 100921388 100921259 5.960000e-39 172.0
10 TraesCS2B01G134900 chr2B 95.082 61 1 1 602 660 100921241 100921181 1.330000e-15 95.3
11 TraesCS2B01G134900 chr2D 93.464 1989 104 15 2496 4479 64605077 64603110 0.000000e+00 2929.0
12 TraesCS2B01G134900 chr2D 92.948 1489 65 17 1033 2502 64606592 64605125 0.000000e+00 2132.0
13 TraesCS2B01G134900 chr2D 89.526 1012 80 9 2584 3592 68863893 68862905 0.000000e+00 1258.0
14 TraesCS2B01G134900 chr2D 88.465 971 68 17 1168 2109 68866245 68865290 0.000000e+00 1133.0
15 TraesCS2B01G134900 chr2D 95.038 665 33 0 1275 1939 69215421 69216085 0.000000e+00 1046.0
16 TraesCS2B01G134900 chr2D 92.994 314 9 7 975 1279 69151556 69151865 3.180000e-121 446.0
17 TraesCS2B01G134900 chr2D 92.013 313 22 3 658 968 383807792 383808103 1.910000e-118 436.0
18 TraesCS2B01G134900 chr2D 91.374 313 26 1 658 969 143750351 143750039 1.150000e-115 427.0
19 TraesCS2B01G134900 chr2D 82.071 396 34 17 290 660 69151170 69151553 2.020000e-78 303.0
20 TraesCS2B01G134900 chr2D 90.909 121 10 1 496 615 64614506 64614386 1.290000e-35 161.0
21 TraesCS2B01G134900 chr2D 88.636 88 8 1 3640 3727 68861110 68861025 6.130000e-19 106.0
22 TraesCS2B01G134900 chr2D 95.082 61 1 2 602 660 64606674 64606614 1.330000e-15 95.3
23 TraesCS2B01G134900 chr2D 86.667 60 4 4 2530 2587 592631051 592630994 3.740000e-06 63.9
24 TraesCS2B01G134900 chr2D 97.059 34 0 1 3725 3757 627642999 627643032 6.260000e-04 56.5
25 TraesCS2B01G134900 chr2A 93.293 1670 82 13 2495 4155 65698733 65697085 0.000000e+00 2436.0
26 TraesCS2B01G134900 chr2A 95.155 1197 32 8 1085 2271 65700107 65698927 0.000000e+00 1866.0
27 TraesCS2B01G134900 chr2A 92.308 247 17 2 4231 4477 65697080 65696836 2.560000e-92 350.0
28 TraesCS2B01G134900 chr2A 93.678 174 10 1 488 660 65700372 65700199 4.440000e-65 259.0
29 TraesCS2B01G134900 chr2A 93.431 137 9 0 2376 2512 65698932 65698796 2.110000e-48 204.0
30 TraesCS2B01G134900 chr2A 90.698 86 4 3 975 1056 65700184 65700099 1.320000e-20 111.0
31 TraesCS2B01G134900 chr4B 96.541 318 9 2 651 966 258762648 258762331 3.970000e-145 525.0
32 TraesCS2B01G134900 chr7B 91.429 315 26 1 655 968 590032374 590032688 8.900000e-117 431.0
33 TraesCS2B01G134900 chr7B 92.857 42 2 1 2530 2571 572400346 572400386 4.840000e-05 60.2
34 TraesCS2B01G134900 chr7D 91.374 313 27 0 655 967 83997527 83997839 3.200000e-116 429.0
35 TraesCS2B01G134900 chr7D 91.401 314 26 1 655 967 209720270 209720583 3.200000e-116 429.0
36 TraesCS2B01G134900 chr3D 91.586 309 25 1 658 965 386221392 386221084 4.140000e-115 425.0
37 TraesCS2B01G134900 chr5A 91.401 314 20 6 658 967 273249283 273248973 1.490000e-114 424.0
38 TraesCS2B01G134900 chr3B 91.346 312 24 2 658 967 204334700 204334390 1.490000e-114 424.0
39 TraesCS2B01G134900 chr3B 100.000 38 0 0 255 292 7148394 7148431 2.240000e-08 71.3
40 TraesCS2B01G134900 chr6A 82.262 451 74 5 3913 4359 106731048 106730600 7.030000e-103 385.0
41 TraesCS2B01G134900 chr1D 76.000 425 77 15 3727 4141 354721010 354721419 3.530000e-46 196.0
42 TraesCS2B01G134900 chr1B 79.273 275 42 12 3727 3994 476344473 476344739 1.280000e-40 178.0
43 TraesCS2B01G134900 chr1B 92.683 41 3 0 2530 2570 17536170 17536210 4.840000e-05 60.2
44 TraesCS2B01G134900 chr6B 89.362 47 5 0 2530 2576 646750224 646750178 4.840000e-05 60.2
45 TraesCS2B01G134900 chr6B 92.308 39 2 1 3720 3758 686507141 686507178 2.000000e-03 54.7
46 TraesCS2B01G134900 chr4A 92.857 42 2 1 2530 2571 531311623 531311663 4.840000e-05 60.2
47 TraesCS2B01G134900 chr3A 92.857 42 2 1 2530 2571 378815068 378815108 4.840000e-05 60.2
48 TraesCS2B01G134900 chr5D 92.683 41 2 1 2530 2570 339760822 339760861 1.740000e-04 58.4
49 TraesCS2B01G134900 chr4D 96.970 33 1 0 3725 3757 9715660 9715628 6.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G134900 chr2B 101437623 101442101 4478 True 8272.000000 8272 100.000000 1 4479 1 chr2B.!!$R2 4478
1 TraesCS2B01G134900 chr2B 101426900 101428627 1727 True 1477.000000 2102 97.931000 2 4479 2 chr2B.!!$R5 4477
2 TraesCS2B01G134900 chr2B 100917317 100921388 4071 True 1081.825000 2909 92.617500 488 4478 4 chr2B.!!$R3 3990
3 TraesCS2B01G134900 chr2B 101414794 101416380 1586 True 875.000000 1543 97.821333 1 1939 3 chr2B.!!$R4 1938
4 TraesCS2B01G134900 chr2D 64603110 64606674 3564 True 1718.766667 2929 93.831333 602 4479 3 chr2D.!!$R4 3877
5 TraesCS2B01G134900 chr2D 69215421 69216085 664 False 1046.000000 1046 95.038000 1275 1939 1 chr2D.!!$F1 664
6 TraesCS2B01G134900 chr2D 68861025 68866245 5220 True 832.333333 1258 88.875667 1168 3727 3 chr2D.!!$R5 2559
7 TraesCS2B01G134900 chr2D 69151170 69151865 695 False 374.500000 446 87.532500 290 1279 2 chr2D.!!$F4 989
8 TraesCS2B01G134900 chr2A 65696836 65700372 3536 True 871.000000 2436 93.093833 488 4477 6 chr2A.!!$R1 3989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.904649 ATGACCGGAAGATGCACTCA 59.095 50.000 9.46 0.00 0.00 3.41 F
665 728 1.750022 TGGTTACCAACTTAGGGCCT 58.250 50.000 12.58 12.58 0.00 5.19 F
666 729 2.067386 TGGTTACCAACTTAGGGCCTT 58.933 47.619 13.45 0.00 0.00 4.35 F
730 793 2.111384 AGGATTAGAGTGCCATGTCGT 58.889 47.619 0.00 0.00 0.00 4.34 F
739 802 2.228822 AGTGCCATGTCGTTTTGAATCC 59.771 45.455 0.00 0.00 0.00 3.01 F
740 803 2.228822 GTGCCATGTCGTTTTGAATCCT 59.771 45.455 0.00 0.00 0.00 3.24 F
1510 1601 2.743718 CAACACCGTCAGGAGCCT 59.256 61.111 0.00 0.00 41.02 4.58 F
2856 4612 1.178534 CCCGCAACAACCAACCAGAT 61.179 55.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 1957 2.205022 TGCATACCTCTTGCAGCTTT 57.795 45.000 0.00 0.00 44.73 3.51 R
2253 3105 1.798223 GCATGCTAGAACACACGACAA 59.202 47.619 11.37 0.00 0.00 3.18 R
2458 4127 4.351874 TTGGAACAGGAAGTCTTACTGG 57.648 45.455 25.55 10.37 42.39 4.00 R
2522 4271 4.513406 AAGTAGTGGTCCAAAGTCCAAA 57.487 40.909 0.00 0.00 32.72 3.28 R
2524 4273 4.657039 ACTAAAGTAGTGGTCCAAAGTCCA 59.343 41.667 0.00 0.00 37.69 4.02 R
2525 4274 5.224821 ACTAAAGTAGTGGTCCAAAGTCC 57.775 43.478 0.00 0.00 37.69 3.85 R
3073 4831 1.080093 GTGTCTCCGGTCGAATGCA 60.080 57.895 0.00 0.00 0.00 3.96 R
3911 7423 0.107361 GTGGGATAGGGTTTCCACCG 60.107 60.000 0.00 0.00 45.39 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.904649 ATGACCGGAAGATGCACTCA 59.095 50.000 9.46 0.00 0.00 3.41
564 591 1.894756 GTGCCTGTACGTTTGGCCA 60.895 57.895 18.82 0.00 45.56 5.36
660 723 5.120208 CAGTTCGACATGGTTACCAACTTAG 59.880 44.000 8.63 0.00 36.95 2.18
661 724 4.196626 TCGACATGGTTACCAACTTAGG 57.803 45.455 8.63 0.00 36.95 2.69
662 725 3.055675 TCGACATGGTTACCAACTTAGGG 60.056 47.826 8.63 0.00 36.95 3.53
663 726 3.014623 GACATGGTTACCAACTTAGGGC 58.985 50.000 8.63 0.00 36.95 5.19
664 727 2.291346 ACATGGTTACCAACTTAGGGCC 60.291 50.000 8.63 0.00 36.95 5.80
665 728 1.750022 TGGTTACCAACTTAGGGCCT 58.250 50.000 12.58 12.58 0.00 5.19
666 729 2.067386 TGGTTACCAACTTAGGGCCTT 58.933 47.619 13.45 0.00 0.00 4.35
667 730 2.447811 TGGTTACCAACTTAGGGCCTTT 59.552 45.455 13.45 0.00 0.00 3.11
668 731 3.117054 TGGTTACCAACTTAGGGCCTTTT 60.117 43.478 13.45 0.00 0.00 2.27
669 732 3.899360 GGTTACCAACTTAGGGCCTTTTT 59.101 43.478 13.45 0.00 0.00 1.94
670 733 4.262292 GGTTACCAACTTAGGGCCTTTTTG 60.262 45.833 13.45 12.69 0.00 2.44
671 734 3.322191 ACCAACTTAGGGCCTTTTTGA 57.678 42.857 13.45 0.00 0.00 2.69
672 735 3.856900 ACCAACTTAGGGCCTTTTTGAT 58.143 40.909 13.45 0.00 0.00 2.57
673 736 4.231273 ACCAACTTAGGGCCTTTTTGATT 58.769 39.130 13.45 0.96 0.00 2.57
674 737 4.283467 ACCAACTTAGGGCCTTTTTGATTC 59.717 41.667 13.45 0.00 0.00 2.52
675 738 4.485163 CAACTTAGGGCCTTTTTGATTCG 58.515 43.478 13.45 0.00 0.00 3.34
676 739 3.763057 ACTTAGGGCCTTTTTGATTCGT 58.237 40.909 13.45 0.00 0.00 3.85
677 740 4.913784 ACTTAGGGCCTTTTTGATTCGTA 58.086 39.130 13.45 0.00 0.00 3.43
678 741 4.941873 ACTTAGGGCCTTTTTGATTCGTAG 59.058 41.667 13.45 0.00 0.00 3.51
679 742 2.723273 AGGGCCTTTTTGATTCGTAGG 58.277 47.619 0.00 0.00 0.00 3.18
680 743 2.307686 AGGGCCTTTTTGATTCGTAGGA 59.692 45.455 0.00 0.00 0.00 2.94
681 744 3.053619 AGGGCCTTTTTGATTCGTAGGAT 60.054 43.478 0.00 0.00 0.00 3.24
682 745 3.699538 GGGCCTTTTTGATTCGTAGGATT 59.300 43.478 0.84 0.00 0.00 3.01
683 746 4.159693 GGGCCTTTTTGATTCGTAGGATTT 59.840 41.667 0.84 0.00 0.00 2.17
684 747 5.337250 GGGCCTTTTTGATTCGTAGGATTTT 60.337 40.000 0.84 0.00 0.00 1.82
685 748 5.805486 GGCCTTTTTGATTCGTAGGATTTTC 59.195 40.000 0.00 0.00 0.00 2.29
686 749 6.386654 GCCTTTTTGATTCGTAGGATTTTCA 58.613 36.000 0.00 0.00 0.00 2.69
687 750 6.866248 GCCTTTTTGATTCGTAGGATTTTCAA 59.134 34.615 0.00 0.00 0.00 2.69
688 751 7.383843 GCCTTTTTGATTCGTAGGATTTTCAAA 59.616 33.333 11.51 11.51 0.00 2.69
689 752 9.255304 CCTTTTTGATTCGTAGGATTTTCAAAA 57.745 29.630 17.97 17.97 35.10 2.44
691 754 7.845617 TTTGATTCGTAGGATTTTCAAAACG 57.154 32.000 12.48 0.00 0.00 3.60
692 755 6.548441 TGATTCGTAGGATTTTCAAAACGT 57.452 33.333 0.00 0.00 0.00 3.99
693 756 7.655236 TGATTCGTAGGATTTTCAAAACGTA 57.345 32.000 0.00 0.00 0.00 3.57
694 757 7.735500 TGATTCGTAGGATTTTCAAAACGTAG 58.264 34.615 0.00 0.00 0.00 3.51
695 758 7.599621 TGATTCGTAGGATTTTCAAAACGTAGA 59.400 33.333 0.00 0.00 0.00 2.59
696 759 7.712264 TTCGTAGGATTTTCAAAACGTAGAA 57.288 32.000 0.00 0.00 0.00 2.10
697 760 7.712264 TCGTAGGATTTTCAAAACGTAGAAA 57.288 32.000 6.64 6.64 32.34 2.52
698 761 8.314143 TCGTAGGATTTTCAAAACGTAGAAAT 57.686 30.769 10.34 3.80 34.10 2.17
699 762 9.421806 TCGTAGGATTTTCAAAACGTAGAAATA 57.578 29.630 10.34 4.51 34.10 1.40
700 763 9.685005 CGTAGGATTTTCAAAACGTAGAAATAG 57.315 33.333 10.34 0.00 34.10 1.73
724 787 4.546829 AAAACGTAGGATTAGAGTGCCA 57.453 40.909 0.00 0.00 0.00 4.92
725 788 4.755266 AAACGTAGGATTAGAGTGCCAT 57.245 40.909 0.00 0.00 0.00 4.40
726 789 3.735237 ACGTAGGATTAGAGTGCCATG 57.265 47.619 0.00 0.00 0.00 3.66
727 790 3.031736 ACGTAGGATTAGAGTGCCATGT 58.968 45.455 0.00 0.00 0.00 3.21
728 791 3.068307 ACGTAGGATTAGAGTGCCATGTC 59.932 47.826 0.00 0.00 0.00 3.06
729 792 2.898729 AGGATTAGAGTGCCATGTCG 57.101 50.000 0.00 0.00 0.00 4.35
730 793 2.111384 AGGATTAGAGTGCCATGTCGT 58.889 47.619 0.00 0.00 0.00 4.34
731 794 2.501723 AGGATTAGAGTGCCATGTCGTT 59.498 45.455 0.00 0.00 0.00 3.85
732 795 3.055094 AGGATTAGAGTGCCATGTCGTTT 60.055 43.478 0.00 0.00 0.00 3.60
733 796 3.689649 GGATTAGAGTGCCATGTCGTTTT 59.310 43.478 0.00 0.00 0.00 2.43
734 797 4.437390 GGATTAGAGTGCCATGTCGTTTTG 60.437 45.833 0.00 0.00 0.00 2.44
735 798 2.254546 AGAGTGCCATGTCGTTTTGA 57.745 45.000 0.00 0.00 0.00 2.69
736 799 2.571212 AGAGTGCCATGTCGTTTTGAA 58.429 42.857 0.00 0.00 0.00 2.69
737 800 3.149196 AGAGTGCCATGTCGTTTTGAAT 58.851 40.909 0.00 0.00 0.00 2.57
738 801 3.189287 AGAGTGCCATGTCGTTTTGAATC 59.811 43.478 0.00 0.00 0.00 2.52
739 802 2.228822 AGTGCCATGTCGTTTTGAATCC 59.771 45.455 0.00 0.00 0.00 3.01
740 803 2.228822 GTGCCATGTCGTTTTGAATCCT 59.771 45.455 0.00 0.00 0.00 3.24
741 804 3.438781 GTGCCATGTCGTTTTGAATCCTA 59.561 43.478 0.00 0.00 0.00 2.94
742 805 3.438781 TGCCATGTCGTTTTGAATCCTAC 59.561 43.478 0.00 0.00 0.00 3.18
743 806 3.438781 GCCATGTCGTTTTGAATCCTACA 59.561 43.478 0.00 0.00 0.00 2.74
744 807 4.437390 GCCATGTCGTTTTGAATCCTACAG 60.437 45.833 0.00 0.00 0.00 2.74
745 808 4.094887 CCATGTCGTTTTGAATCCTACAGG 59.905 45.833 0.00 0.00 0.00 4.00
758 821 3.693807 TCCTACAGGATTGTACGAGTGT 58.306 45.455 0.00 0.00 39.78 3.55
759 822 4.084287 TCCTACAGGATTGTACGAGTGTT 58.916 43.478 0.00 0.00 39.78 3.32
760 823 4.525487 TCCTACAGGATTGTACGAGTGTTT 59.475 41.667 0.00 0.00 39.78 2.83
761 824 4.625742 CCTACAGGATTGTACGAGTGTTTG 59.374 45.833 0.00 0.00 38.76 2.93
762 825 4.330944 ACAGGATTGTACGAGTGTTTGA 57.669 40.909 0.00 0.00 35.25 2.69
763 826 4.894784 ACAGGATTGTACGAGTGTTTGAT 58.105 39.130 0.00 0.00 35.25 2.57
764 827 5.305585 ACAGGATTGTACGAGTGTTTGATT 58.694 37.500 0.00 0.00 35.25 2.57
765 828 5.179368 ACAGGATTGTACGAGTGTTTGATTG 59.821 40.000 0.00 0.00 35.25 2.67
766 829 5.179368 CAGGATTGTACGAGTGTTTGATTGT 59.821 40.000 0.00 0.00 0.00 2.71
767 830 5.179368 AGGATTGTACGAGTGTTTGATTGTG 59.821 40.000 0.00 0.00 0.00 3.33
768 831 3.870723 TGTACGAGTGTTTGATTGTGC 57.129 42.857 0.00 0.00 0.00 4.57
769 832 3.198872 TGTACGAGTGTTTGATTGTGCA 58.801 40.909 0.00 0.00 0.00 4.57
770 833 3.812609 TGTACGAGTGTTTGATTGTGCAT 59.187 39.130 0.00 0.00 0.00 3.96
771 834 4.991687 TGTACGAGTGTTTGATTGTGCATA 59.008 37.500 0.00 0.00 0.00 3.14
772 835 4.668576 ACGAGTGTTTGATTGTGCATAG 57.331 40.909 0.00 0.00 0.00 2.23
773 836 4.314961 ACGAGTGTTTGATTGTGCATAGA 58.685 39.130 0.00 0.00 0.00 1.98
774 837 4.754618 ACGAGTGTTTGATTGTGCATAGAA 59.245 37.500 0.00 0.00 0.00 2.10
775 838 5.238432 ACGAGTGTTTGATTGTGCATAGAAA 59.762 36.000 0.00 0.00 0.00 2.52
776 839 6.142139 CGAGTGTTTGATTGTGCATAGAAAA 58.858 36.000 0.00 0.00 0.00 2.29
777 840 6.636447 CGAGTGTTTGATTGTGCATAGAAAAA 59.364 34.615 0.00 0.00 0.00 1.94
778 841 7.357532 CGAGTGTTTGATTGTGCATAGAAAAAC 60.358 37.037 0.00 0.00 0.00 2.43
779 842 6.417635 AGTGTTTGATTGTGCATAGAAAAACG 59.582 34.615 0.00 0.00 0.00 3.60
780 843 6.198216 GTGTTTGATTGTGCATAGAAAAACGT 59.802 34.615 0.00 0.00 0.00 3.99
781 844 7.377397 GTGTTTGATTGTGCATAGAAAAACGTA 59.623 33.333 0.00 0.00 0.00 3.57
782 845 7.589587 TGTTTGATTGTGCATAGAAAAACGTAG 59.410 33.333 0.00 0.00 0.00 3.51
783 846 6.176975 TGATTGTGCATAGAAAAACGTAGG 57.823 37.500 0.00 0.00 0.00 3.18
784 847 5.123186 TGATTGTGCATAGAAAAACGTAGGG 59.877 40.000 0.00 0.00 0.00 3.53
785 848 4.010667 TGTGCATAGAAAAACGTAGGGT 57.989 40.909 0.00 0.00 0.00 4.34
786 849 4.391155 TGTGCATAGAAAAACGTAGGGTT 58.609 39.130 0.00 0.00 41.76 4.11
787 850 4.453136 TGTGCATAGAAAAACGTAGGGTTC 59.547 41.667 0.00 0.00 38.08 3.62
788 851 4.694037 GTGCATAGAAAAACGTAGGGTTCT 59.306 41.667 0.00 0.00 38.08 3.01
789 852 5.180680 GTGCATAGAAAAACGTAGGGTTCTT 59.819 40.000 7.87 0.00 38.08 2.52
790 853 5.766174 TGCATAGAAAAACGTAGGGTTCTTT 59.234 36.000 7.87 0.09 38.08 2.52
791 854 6.072893 TGCATAGAAAAACGTAGGGTTCTTTC 60.073 38.462 7.87 0.00 38.08 2.62
792 855 6.072893 GCATAGAAAAACGTAGGGTTCTTTCA 60.073 38.462 7.87 0.00 38.08 2.69
793 856 7.520937 GCATAGAAAAACGTAGGGTTCTTTCAA 60.521 37.037 7.87 0.00 38.08 2.69
794 857 6.762702 AGAAAAACGTAGGGTTCTTTCAAA 57.237 33.333 0.00 0.00 38.08 2.69
795 858 6.792326 AGAAAAACGTAGGGTTCTTTCAAAG 58.208 36.000 0.00 0.00 38.08 2.77
796 859 6.600427 AGAAAAACGTAGGGTTCTTTCAAAGA 59.400 34.615 0.00 0.00 38.08 2.52
797 860 6.373186 AAAACGTAGGGTTCTTTCAAAGAG 57.627 37.500 0.00 0.00 38.08 2.85
798 861 4.950205 ACGTAGGGTTCTTTCAAAGAGA 57.050 40.909 0.00 0.00 39.03 3.10
799 862 5.485209 ACGTAGGGTTCTTTCAAAGAGAT 57.515 39.130 0.00 0.00 39.03 2.75
800 863 5.866207 ACGTAGGGTTCTTTCAAAGAGATT 58.134 37.500 0.00 0.00 39.03 2.40
801 864 6.296803 ACGTAGGGTTCTTTCAAAGAGATTT 58.703 36.000 0.00 0.00 39.03 2.17
802 865 6.204882 ACGTAGGGTTCTTTCAAAGAGATTTG 59.795 38.462 0.00 0.00 39.03 2.32
803 866 6.426937 CGTAGGGTTCTTTCAAAGAGATTTGA 59.573 38.462 0.00 0.00 39.03 2.69
804 867 6.890979 AGGGTTCTTTCAAAGAGATTTGAG 57.109 37.500 0.00 0.00 41.38 3.02
805 868 6.368805 AGGGTTCTTTCAAAGAGATTTGAGT 58.631 36.000 0.00 0.00 41.38 3.41
806 869 6.264067 AGGGTTCTTTCAAAGAGATTTGAGTG 59.736 38.462 0.00 2.41 41.38 3.51
807 870 6.442112 GGTTCTTTCAAAGAGATTTGAGTGG 58.558 40.000 0.00 0.44 41.38 4.00
808 871 6.263168 GGTTCTTTCAAAGAGATTTGAGTGGA 59.737 38.462 0.00 2.37 41.38 4.02
809 872 7.040132 GGTTCTTTCAAAGAGATTTGAGTGGAT 60.040 37.037 0.00 0.00 41.38 3.41
810 873 9.003658 GTTCTTTCAAAGAGATTTGAGTGGATA 57.996 33.333 0.00 0.00 41.38 2.59
811 874 9.573166 TTCTTTCAAAGAGATTTGAGTGGATAA 57.427 29.630 0.00 0.00 41.38 1.75
812 875 9.573166 TCTTTCAAAGAGATTTGAGTGGATAAA 57.427 29.630 0.00 0.00 41.38 1.40
845 908 9.060347 TCTATGAAATCTAGTGCAAATGAATCC 57.940 33.333 0.00 0.00 0.00 3.01
846 909 7.893124 ATGAAATCTAGTGCAAATGAATCCT 57.107 32.000 0.00 0.00 0.00 3.24
847 910 8.985315 ATGAAATCTAGTGCAAATGAATCCTA 57.015 30.769 0.00 0.00 0.00 2.94
848 911 8.985315 TGAAATCTAGTGCAAATGAATCCTAT 57.015 30.769 0.00 0.00 0.00 2.57
849 912 8.843262 TGAAATCTAGTGCAAATGAATCCTATG 58.157 33.333 0.00 0.00 0.00 2.23
850 913 7.756395 AATCTAGTGCAAATGAATCCTATGG 57.244 36.000 0.00 0.00 0.00 2.74
851 914 6.499106 TCTAGTGCAAATGAATCCTATGGA 57.501 37.500 0.00 0.00 35.55 3.41
852 915 6.899089 TCTAGTGCAAATGAATCCTATGGAA 58.101 36.000 0.00 0.00 34.34 3.53
853 916 7.345691 TCTAGTGCAAATGAATCCTATGGAAA 58.654 34.615 0.00 0.00 34.34 3.13
854 917 6.855763 AGTGCAAATGAATCCTATGGAAAA 57.144 33.333 0.00 0.00 34.34 2.29
855 918 7.243604 AGTGCAAATGAATCCTATGGAAAAA 57.756 32.000 0.00 0.00 34.34 1.94
856 919 7.854337 AGTGCAAATGAATCCTATGGAAAAAT 58.146 30.769 0.00 0.00 34.34 1.82
857 920 8.323567 AGTGCAAATGAATCCTATGGAAAAATT 58.676 29.630 0.00 0.00 34.34 1.82
858 921 8.606602 GTGCAAATGAATCCTATGGAAAAATTC 58.393 33.333 0.00 0.00 34.34 2.17
874 937 7.041721 GGAAAAATTCCTATGGTTCACAATCC 58.958 38.462 1.86 0.00 46.57 3.01
875 938 7.093333 GGAAAAATTCCTATGGTTCACAATCCT 60.093 37.037 1.86 0.00 46.57 3.24
876 939 8.893563 AAAAATTCCTATGGTTCACAATCCTA 57.106 30.769 0.00 0.00 0.00 2.94
877 940 9.492730 AAAAATTCCTATGGTTCACAATCCTAT 57.507 29.630 0.00 0.00 0.00 2.57
878 941 8.469309 AAATTCCTATGGTTCACAATCCTATG 57.531 34.615 0.00 0.00 0.00 2.23
879 942 6.823286 TTCCTATGGTTCACAATCCTATGA 57.177 37.500 0.00 0.00 0.00 2.15
880 943 6.823286 TCCTATGGTTCACAATCCTATGAA 57.177 37.500 0.00 0.00 32.44 2.57
881 944 7.392766 TCCTATGGTTCACAATCCTATGAAT 57.607 36.000 0.00 0.00 37.19 2.57
882 945 7.453393 TCCTATGGTTCACAATCCTATGAATC 58.547 38.462 0.00 0.00 37.19 2.52
883 946 7.072328 TCCTATGGTTCACAATCCTATGAATCA 59.928 37.037 2.65 2.65 46.93 2.57
884 947 7.720957 CCTATGGTTCACAATCCTATGAATCAA 59.279 37.037 4.20 0.00 46.23 2.57
885 948 7.959658 ATGGTTCACAATCCTATGAATCAAA 57.040 32.000 4.20 0.00 46.23 2.69
886 949 7.156876 TGGTTCACAATCCTATGAATCAAAC 57.843 36.000 0.00 0.00 41.75 2.93
887 950 6.718912 TGGTTCACAATCCTATGAATCAAACA 59.281 34.615 0.00 0.00 41.75 2.83
888 951 7.232330 TGGTTCACAATCCTATGAATCAAACAA 59.768 33.333 0.00 0.00 41.75 2.83
889 952 7.542130 GGTTCACAATCCTATGAATCAAACAAC 59.458 37.037 0.00 0.00 36.21 3.32
890 953 7.156876 TCACAATCCTATGAATCAAACAACC 57.843 36.000 0.00 0.00 0.00 3.77
891 954 6.152661 TCACAATCCTATGAATCAAACAACCC 59.847 38.462 0.00 0.00 0.00 4.11
892 955 6.015918 ACAATCCTATGAATCAAACAACCCA 58.984 36.000 0.00 0.00 0.00 4.51
893 956 6.071391 ACAATCCTATGAATCAAACAACCCAC 60.071 38.462 0.00 0.00 0.00 4.61
894 957 4.991776 TCCTATGAATCAAACAACCCACA 58.008 39.130 0.00 0.00 0.00 4.17
895 958 5.579047 TCCTATGAATCAAACAACCCACAT 58.421 37.500 0.00 0.00 0.00 3.21
896 959 6.726379 TCCTATGAATCAAACAACCCACATA 58.274 36.000 0.00 0.00 0.00 2.29
897 960 6.828273 TCCTATGAATCAAACAACCCACATAG 59.172 38.462 0.00 0.00 37.06 2.23
898 961 5.920193 ATGAATCAAACAACCCACATAGG 57.080 39.130 0.00 0.00 37.03 2.57
899 962 4.991776 TGAATCAAACAACCCACATAGGA 58.008 39.130 0.00 0.00 41.22 2.94
900 963 5.389520 TGAATCAAACAACCCACATAGGAA 58.610 37.500 0.00 0.00 41.22 3.36
901 964 5.835819 TGAATCAAACAACCCACATAGGAAA 59.164 36.000 0.00 0.00 41.22 3.13
902 965 6.325028 TGAATCAAACAACCCACATAGGAAAA 59.675 34.615 0.00 0.00 41.22 2.29
903 966 6.739331 ATCAAACAACCCACATAGGAAAAA 57.261 33.333 0.00 0.00 41.22 1.94
904 967 6.739331 TCAAACAACCCACATAGGAAAAAT 57.261 33.333 0.00 0.00 41.22 1.82
905 968 7.130681 TCAAACAACCCACATAGGAAAAATT 57.869 32.000 0.00 0.00 41.22 1.82
906 969 7.213678 TCAAACAACCCACATAGGAAAAATTC 58.786 34.615 0.00 0.00 41.22 2.17
949 1012 8.248904 TCAAAATTCCTTTGAGAATCCTTTGA 57.751 30.769 8.80 8.80 46.80 2.69
950 1013 8.703743 TCAAAATTCCTTTGAGAATCCTTTGAA 58.296 29.630 9.83 0.00 46.80 2.69
951 1014 9.498176 CAAAATTCCTTTGAGAATCCTTTGAAT 57.502 29.630 5.90 0.00 46.35 2.57
952 1015 9.716531 AAAATTCCTTTGAGAATCCTTTGAATC 57.283 29.630 0.00 0.00 35.40 2.52
953 1016 8.426569 AATTCCTTTGAGAATCCTTTGAATCA 57.573 30.769 0.00 0.00 35.40 2.57
954 1017 7.838079 TTCCTTTGAGAATCCTTTGAATCAA 57.162 32.000 0.00 0.00 0.00 2.57
955 1018 7.838079 TCCTTTGAGAATCCTTTGAATCAAA 57.162 32.000 8.25 8.25 33.82 2.69
1510 1601 2.743718 CAACACCGTCAGGAGCCT 59.256 61.111 0.00 0.00 41.02 4.58
1924 2018 5.332707 TGTCTACTCTTTCGATCATGAACG 58.667 41.667 18.32 18.32 0.00 3.95
2252 3104 3.064207 CGTAAGGCAACACATACACACT 58.936 45.455 0.00 0.00 41.41 3.55
2253 3105 3.496884 CGTAAGGCAACACATACACACTT 59.503 43.478 0.00 0.00 41.41 3.16
2383 4039 3.248363 CACATGATTGTACCTACGCATGG 59.752 47.826 0.00 0.00 37.26 3.66
2752 4508 5.402270 GCACGTTTTTAGCATCAATGACTTT 59.598 36.000 0.00 0.00 0.00 2.66
2856 4612 1.178534 CCCGCAACAACCAACCAGAT 61.179 55.000 0.00 0.00 0.00 2.90
2860 4616 1.197721 GCAACAACCAACCAGATCTCG 59.802 52.381 0.00 0.00 0.00 4.04
2894 4650 7.016072 TGTCATTTTTGAAAGGTGGGTGAATAT 59.984 33.333 0.00 0.00 0.00 1.28
2895 4651 7.877612 GTCATTTTTGAAAGGTGGGTGAATATT 59.122 33.333 0.00 0.00 0.00 1.28
2896 4652 9.094578 TCATTTTTGAAAGGTGGGTGAATATTA 57.905 29.630 0.00 0.00 0.00 0.98
2931 4687 7.881643 TTAACTGGTAAAATTAACGTCGCTA 57.118 32.000 0.00 0.00 0.00 4.26
2938 4694 6.476706 GGTAAAATTAACGTCGCTACCTACAT 59.523 38.462 0.00 0.00 0.00 2.29
3073 4831 1.071471 CTGGACCAAGTGCTCCGTT 59.929 57.895 0.00 0.00 0.00 4.44
3718 7226 3.138283 TCACAGTTCCCACCTTCTTCATT 59.862 43.478 0.00 0.00 0.00 2.57
3778 7286 1.578583 GGTCCACATAATTCCGACGG 58.421 55.000 7.84 7.84 0.00 4.79
3822 7333 2.886134 GCCACACCAGACCCCGTAA 61.886 63.158 0.00 0.00 0.00 3.18
3900 7412 2.097036 CAGTATATATCCGGGTCCGCA 58.903 52.381 0.00 0.00 38.24 5.69
3911 7423 2.585247 GTCCGCAGCCGTGATACC 60.585 66.667 0.00 0.00 0.00 2.73
4286 7799 1.687682 GGAGGATCTCACTCAGCTCCA 60.688 57.143 0.00 0.00 39.62 3.86
4414 7927 4.121669 GCTGTGCGCGAGAGGAGA 62.122 66.667 12.10 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
564 591 1.734388 GCTGTTGGTTCGTTGGGCTT 61.734 55.000 0.00 0.00 0.00 4.35
660 723 2.718563 TCCTACGAATCAAAAAGGCCC 58.281 47.619 0.00 0.00 0.00 5.80
661 724 4.983671 AATCCTACGAATCAAAAAGGCC 57.016 40.909 0.00 0.00 0.00 5.19
662 725 6.386654 TGAAAATCCTACGAATCAAAAAGGC 58.613 36.000 0.00 0.00 0.00 4.35
663 726 8.810652 TTTGAAAATCCTACGAATCAAAAAGG 57.189 30.769 0.00 0.00 0.00 3.11
665 728 8.747666 CGTTTTGAAAATCCTACGAATCAAAAA 58.252 29.630 11.64 0.00 37.50 1.94
666 729 7.916450 ACGTTTTGAAAATCCTACGAATCAAAA 59.084 29.630 6.15 7.23 34.71 2.44
667 730 7.419204 ACGTTTTGAAAATCCTACGAATCAAA 58.581 30.769 6.15 0.00 33.60 2.69
668 731 6.961576 ACGTTTTGAAAATCCTACGAATCAA 58.038 32.000 6.15 0.00 33.60 2.57
669 732 6.548441 ACGTTTTGAAAATCCTACGAATCA 57.452 33.333 6.15 0.00 33.60 2.57
670 733 7.956558 TCTACGTTTTGAAAATCCTACGAATC 58.043 34.615 6.15 0.00 33.60 2.52
671 734 7.894376 TCTACGTTTTGAAAATCCTACGAAT 57.106 32.000 6.15 0.00 33.60 3.34
672 735 7.712264 TTCTACGTTTTGAAAATCCTACGAA 57.288 32.000 6.15 0.00 33.60 3.85
673 736 7.712264 TTTCTACGTTTTGAAAATCCTACGA 57.288 32.000 6.15 0.00 33.60 3.43
674 737 9.685005 CTATTTCTACGTTTTGAAAATCCTACG 57.315 33.333 12.60 0.00 36.06 3.51
702 765 4.901868 TGGCACTCTAATCCTACGTTTTT 58.098 39.130 0.00 0.00 0.00 1.94
703 766 4.546829 TGGCACTCTAATCCTACGTTTT 57.453 40.909 0.00 0.00 0.00 2.43
704 767 4.081087 ACATGGCACTCTAATCCTACGTTT 60.081 41.667 0.00 0.00 0.00 3.60
705 768 3.451178 ACATGGCACTCTAATCCTACGTT 59.549 43.478 0.00 0.00 0.00 3.99
706 769 3.031736 ACATGGCACTCTAATCCTACGT 58.968 45.455 0.00 0.00 0.00 3.57
707 770 3.643763 GACATGGCACTCTAATCCTACG 58.356 50.000 0.00 0.00 0.00 3.51
708 771 3.068307 ACGACATGGCACTCTAATCCTAC 59.932 47.826 0.00 0.00 0.00 3.18
709 772 3.296854 ACGACATGGCACTCTAATCCTA 58.703 45.455 0.00 0.00 0.00 2.94
710 773 2.111384 ACGACATGGCACTCTAATCCT 58.889 47.619 0.00 0.00 0.00 3.24
711 774 2.604046 ACGACATGGCACTCTAATCC 57.396 50.000 0.00 0.00 0.00 3.01
712 775 4.391830 TCAAAACGACATGGCACTCTAATC 59.608 41.667 0.00 0.00 0.00 1.75
713 776 4.323417 TCAAAACGACATGGCACTCTAAT 58.677 39.130 0.00 0.00 0.00 1.73
714 777 3.734463 TCAAAACGACATGGCACTCTAA 58.266 40.909 0.00 0.00 0.00 2.10
715 778 3.394674 TCAAAACGACATGGCACTCTA 57.605 42.857 0.00 0.00 0.00 2.43
716 779 2.254546 TCAAAACGACATGGCACTCT 57.745 45.000 0.00 0.00 0.00 3.24
717 780 3.492313 GATTCAAAACGACATGGCACTC 58.508 45.455 0.00 0.00 0.00 3.51
718 781 2.228822 GGATTCAAAACGACATGGCACT 59.771 45.455 0.00 0.00 0.00 4.40
719 782 2.228822 AGGATTCAAAACGACATGGCAC 59.771 45.455 0.00 0.00 0.00 5.01
720 783 2.513753 AGGATTCAAAACGACATGGCA 58.486 42.857 0.00 0.00 0.00 4.92
721 784 3.438781 TGTAGGATTCAAAACGACATGGC 59.561 43.478 0.00 0.00 0.00 4.40
722 785 4.094887 CCTGTAGGATTCAAAACGACATGG 59.905 45.833 0.00 0.00 37.39 3.66
723 786 4.935205 TCCTGTAGGATTCAAAACGACATG 59.065 41.667 0.00 0.00 39.78 3.21
724 787 5.160607 TCCTGTAGGATTCAAAACGACAT 57.839 39.130 0.00 0.00 39.78 3.06
725 788 4.610605 TCCTGTAGGATTCAAAACGACA 57.389 40.909 0.00 0.00 39.78 4.35
738 801 4.451629 AACACTCGTACAATCCTGTAGG 57.548 45.455 0.00 0.00 42.66 3.18
739 802 5.466819 TCAAACACTCGTACAATCCTGTAG 58.533 41.667 0.00 0.00 38.73 2.74
740 803 5.456548 TCAAACACTCGTACAATCCTGTA 57.543 39.130 0.00 0.00 36.96 2.74
741 804 4.330944 TCAAACACTCGTACAATCCTGT 57.669 40.909 0.00 0.00 39.75 4.00
742 805 5.179368 ACAATCAAACACTCGTACAATCCTG 59.821 40.000 0.00 0.00 0.00 3.86
743 806 5.179368 CACAATCAAACACTCGTACAATCCT 59.821 40.000 0.00 0.00 0.00 3.24
744 807 5.382303 CACAATCAAACACTCGTACAATCC 58.618 41.667 0.00 0.00 0.00 3.01
745 808 4.846137 GCACAATCAAACACTCGTACAATC 59.154 41.667 0.00 0.00 0.00 2.67
746 809 4.274705 TGCACAATCAAACACTCGTACAAT 59.725 37.500 0.00 0.00 0.00 2.71
747 810 3.623510 TGCACAATCAAACACTCGTACAA 59.376 39.130 0.00 0.00 0.00 2.41
748 811 3.198872 TGCACAATCAAACACTCGTACA 58.801 40.909 0.00 0.00 0.00 2.90
749 812 3.870723 TGCACAATCAAACACTCGTAC 57.129 42.857 0.00 0.00 0.00 3.67
750 813 5.474825 TCTATGCACAATCAAACACTCGTA 58.525 37.500 0.00 0.00 0.00 3.43
751 814 4.314961 TCTATGCACAATCAAACACTCGT 58.685 39.130 0.00 0.00 0.00 4.18
752 815 4.926860 TCTATGCACAATCAAACACTCG 57.073 40.909 0.00 0.00 0.00 4.18
753 816 7.357532 CGTTTTTCTATGCACAATCAAACACTC 60.358 37.037 11.21 0.00 0.00 3.51
754 817 6.417635 CGTTTTTCTATGCACAATCAAACACT 59.582 34.615 11.21 0.00 0.00 3.55
755 818 6.198216 ACGTTTTTCTATGCACAATCAAACAC 59.802 34.615 11.21 1.30 0.00 3.32
756 819 6.269315 ACGTTTTTCTATGCACAATCAAACA 58.731 32.000 11.21 0.00 0.00 2.83
757 820 6.747659 ACGTTTTTCTATGCACAATCAAAC 57.252 33.333 0.00 0.00 0.00 2.93
758 821 7.081349 CCTACGTTTTTCTATGCACAATCAAA 58.919 34.615 0.00 0.00 0.00 2.69
759 822 6.348950 CCCTACGTTTTTCTATGCACAATCAA 60.349 38.462 0.00 0.00 0.00 2.57
760 823 5.123186 CCCTACGTTTTTCTATGCACAATCA 59.877 40.000 0.00 0.00 0.00 2.57
761 824 5.123344 ACCCTACGTTTTTCTATGCACAATC 59.877 40.000 0.00 0.00 0.00 2.67
762 825 5.007682 ACCCTACGTTTTTCTATGCACAAT 58.992 37.500 0.00 0.00 0.00 2.71
763 826 4.391155 ACCCTACGTTTTTCTATGCACAA 58.609 39.130 0.00 0.00 0.00 3.33
764 827 4.010667 ACCCTACGTTTTTCTATGCACA 57.989 40.909 0.00 0.00 0.00 4.57
765 828 4.694037 AGAACCCTACGTTTTTCTATGCAC 59.306 41.667 0.00 0.00 33.74 4.57
766 829 4.901868 AGAACCCTACGTTTTTCTATGCA 58.098 39.130 0.00 0.00 33.74 3.96
767 830 5.874895 AAGAACCCTACGTTTTTCTATGC 57.125 39.130 0.00 0.00 33.74 3.14
768 831 7.429636 TGAAAGAACCCTACGTTTTTCTATG 57.570 36.000 0.00 0.00 35.17 2.23
769 832 8.454570 TTTGAAAGAACCCTACGTTTTTCTAT 57.545 30.769 0.00 0.00 35.17 1.98
770 833 7.769970 TCTTTGAAAGAACCCTACGTTTTTCTA 59.230 33.333 4.94 0.00 35.17 2.10
771 834 6.600427 TCTTTGAAAGAACCCTACGTTTTTCT 59.400 34.615 4.94 0.00 35.17 2.52
772 835 6.788243 TCTTTGAAAGAACCCTACGTTTTTC 58.212 36.000 4.94 0.00 33.74 2.29
773 836 6.600427 TCTCTTTGAAAGAACCCTACGTTTTT 59.400 34.615 9.15 0.00 37.02 1.94
774 837 6.117488 TCTCTTTGAAAGAACCCTACGTTTT 58.883 36.000 9.15 0.00 37.02 2.43
775 838 5.677567 TCTCTTTGAAAGAACCCTACGTTT 58.322 37.500 9.15 0.00 37.02 3.60
776 839 5.286267 TCTCTTTGAAAGAACCCTACGTT 57.714 39.130 9.15 0.00 37.02 3.99
777 840 4.950205 TCTCTTTGAAAGAACCCTACGT 57.050 40.909 9.15 0.00 37.02 3.57
778 841 6.426937 TCAAATCTCTTTGAAAGAACCCTACG 59.573 38.462 9.15 0.00 45.91 3.51
779 842 7.745620 TCAAATCTCTTTGAAAGAACCCTAC 57.254 36.000 9.15 0.00 45.91 3.18
819 882 9.060347 GGATTCATTTGCACTAGATTTCATAGA 57.940 33.333 0.00 0.00 0.00 1.98
820 883 9.064706 AGGATTCATTTGCACTAGATTTCATAG 57.935 33.333 0.00 0.00 0.00 2.23
821 884 8.985315 AGGATTCATTTGCACTAGATTTCATA 57.015 30.769 0.00 0.00 0.00 2.15
822 885 7.893124 AGGATTCATTTGCACTAGATTTCAT 57.107 32.000 0.00 0.00 0.00 2.57
823 886 8.843262 CATAGGATTCATTTGCACTAGATTTCA 58.157 33.333 0.00 0.00 0.00 2.69
824 887 8.295288 CCATAGGATTCATTTGCACTAGATTTC 58.705 37.037 0.00 0.00 0.00 2.17
825 888 8.000709 TCCATAGGATTCATTTGCACTAGATTT 58.999 33.333 0.00 0.00 0.00 2.17
826 889 7.520798 TCCATAGGATTCATTTGCACTAGATT 58.479 34.615 0.00 0.00 0.00 2.40
827 890 7.083062 TCCATAGGATTCATTTGCACTAGAT 57.917 36.000 0.00 0.00 0.00 1.98
828 891 6.499106 TCCATAGGATTCATTTGCACTAGA 57.501 37.500 0.00 0.00 0.00 2.43
829 892 7.572523 TTTCCATAGGATTCATTTGCACTAG 57.427 36.000 0.00 0.00 0.00 2.57
830 893 7.953005 TTTTCCATAGGATTCATTTGCACTA 57.047 32.000 0.00 0.00 0.00 2.74
831 894 6.855763 TTTTCCATAGGATTCATTTGCACT 57.144 33.333 0.00 0.00 0.00 4.40
832 895 8.496707 AATTTTTCCATAGGATTCATTTGCAC 57.503 30.769 0.00 0.00 0.00 4.57
833 896 8.721019 GAATTTTTCCATAGGATTCATTTGCA 57.279 30.769 0.00 0.00 0.00 4.08
850 913 7.840931 AGGATTGTGAACCATAGGAATTTTTC 58.159 34.615 0.00 0.00 0.00 2.29
851 914 7.797121 AGGATTGTGAACCATAGGAATTTTT 57.203 32.000 0.00 0.00 0.00 1.94
852 915 8.917088 CATAGGATTGTGAACCATAGGAATTTT 58.083 33.333 0.00 0.00 0.00 1.82
853 916 8.281531 TCATAGGATTGTGAACCATAGGAATTT 58.718 33.333 0.00 0.00 0.00 1.82
854 917 7.815383 TCATAGGATTGTGAACCATAGGAATT 58.185 34.615 0.00 0.00 0.00 2.17
855 918 7.392766 TCATAGGATTGTGAACCATAGGAAT 57.607 36.000 0.00 0.00 0.00 3.01
856 919 6.823286 TCATAGGATTGTGAACCATAGGAA 57.177 37.500 0.00 0.00 0.00 3.36
857 920 6.823286 TTCATAGGATTGTGAACCATAGGA 57.177 37.500 0.00 0.00 30.59 2.94
858 921 7.226441 TGATTCATAGGATTGTGAACCATAGG 58.774 38.462 0.00 0.00 37.27 2.57
859 922 8.681486 TTGATTCATAGGATTGTGAACCATAG 57.319 34.615 0.00 0.00 37.27 2.23
860 923 8.902806 GTTTGATTCATAGGATTGTGAACCATA 58.097 33.333 0.00 0.00 37.27 2.74
861 924 7.396907 TGTTTGATTCATAGGATTGTGAACCAT 59.603 33.333 0.00 0.00 37.27 3.55
862 925 6.718912 TGTTTGATTCATAGGATTGTGAACCA 59.281 34.615 0.00 0.00 37.27 3.67
863 926 7.156876 TGTTTGATTCATAGGATTGTGAACC 57.843 36.000 0.00 0.00 37.27 3.62
864 927 7.542130 GGTTGTTTGATTCATAGGATTGTGAAC 59.458 37.037 0.00 0.00 37.27 3.18
865 928 7.309744 GGGTTGTTTGATTCATAGGATTGTGAA 60.310 37.037 0.00 0.00 38.55 3.18
866 929 6.152661 GGGTTGTTTGATTCATAGGATTGTGA 59.847 38.462 0.00 0.00 0.00 3.58
867 930 6.071447 TGGGTTGTTTGATTCATAGGATTGTG 60.071 38.462 0.00 0.00 0.00 3.33
868 931 6.015918 TGGGTTGTTTGATTCATAGGATTGT 58.984 36.000 0.00 0.00 0.00 2.71
869 932 6.071447 TGTGGGTTGTTTGATTCATAGGATTG 60.071 38.462 0.00 0.00 0.00 2.67
870 933 6.015918 TGTGGGTTGTTTGATTCATAGGATT 58.984 36.000 0.00 0.00 0.00 3.01
871 934 5.579047 TGTGGGTTGTTTGATTCATAGGAT 58.421 37.500 0.00 0.00 0.00 3.24
872 935 4.991776 TGTGGGTTGTTTGATTCATAGGA 58.008 39.130 0.00 0.00 0.00 2.94
873 936 5.920193 ATGTGGGTTGTTTGATTCATAGG 57.080 39.130 0.00 0.00 0.00 2.57
874 937 6.828273 TCCTATGTGGGTTGTTTGATTCATAG 59.172 38.462 0.00 0.00 35.63 2.23
875 938 6.726379 TCCTATGTGGGTTGTTTGATTCATA 58.274 36.000 0.00 0.00 36.20 2.15
876 939 5.579047 TCCTATGTGGGTTGTTTGATTCAT 58.421 37.500 0.00 0.00 36.20 2.57
877 940 4.991776 TCCTATGTGGGTTGTTTGATTCA 58.008 39.130 0.00 0.00 36.20 2.57
878 941 5.975693 TTCCTATGTGGGTTGTTTGATTC 57.024 39.130 0.00 0.00 36.20 2.52
879 942 6.739331 TTTTCCTATGTGGGTTGTTTGATT 57.261 33.333 0.00 0.00 36.20 2.57
880 943 6.739331 TTTTTCCTATGTGGGTTGTTTGAT 57.261 33.333 0.00 0.00 36.20 2.57
881 944 6.739331 ATTTTTCCTATGTGGGTTGTTTGA 57.261 33.333 0.00 0.00 36.20 2.69
882 945 6.426633 GGAATTTTTCCTATGTGGGTTGTTTG 59.573 38.462 0.00 0.00 46.57 2.93
883 946 6.530120 GGAATTTTTCCTATGTGGGTTGTTT 58.470 36.000 0.00 0.00 46.57 2.83
884 947 6.109156 GGAATTTTTCCTATGTGGGTTGTT 57.891 37.500 0.00 0.00 46.57 2.83
885 948 5.738619 GGAATTTTTCCTATGTGGGTTGT 57.261 39.130 0.00 0.00 46.57 3.32
925 988 8.891671 TTCAAAGGATTCTCAAAGGAATTTTG 57.108 30.769 0.00 0.00 46.09 2.44
926 989 9.716531 GATTCAAAGGATTCTCAAAGGAATTTT 57.283 29.630 0.00 0.00 36.24 1.82
927 990 8.873144 TGATTCAAAGGATTCTCAAAGGAATTT 58.127 29.630 0.00 0.00 36.24 1.82
928 991 8.426569 TGATTCAAAGGATTCTCAAAGGAATT 57.573 30.769 0.00 0.00 36.24 2.17
929 992 8.426569 TTGATTCAAAGGATTCTCAAAGGAAT 57.573 30.769 0.00 0.00 38.47 3.01
930 993 7.838079 TTGATTCAAAGGATTCTCAAAGGAA 57.162 32.000 0.00 0.00 0.00 3.36
931 994 7.838079 TTTGATTCAAAGGATTCTCAAAGGA 57.162 32.000 7.74 0.00 31.21 3.36
945 1008 6.239289 CCAGTTAAGGGCTTCTTTGATTCAAA 60.239 38.462 11.19 11.19 36.93 2.69
946 1009 5.243730 CCAGTTAAGGGCTTCTTTGATTCAA 59.756 40.000 0.00 0.00 36.93 2.69
947 1010 4.766891 CCAGTTAAGGGCTTCTTTGATTCA 59.233 41.667 0.00 0.00 36.93 2.57
948 1011 4.158579 CCCAGTTAAGGGCTTCTTTGATTC 59.841 45.833 0.00 0.00 43.10 2.52
949 1012 4.089361 CCCAGTTAAGGGCTTCTTTGATT 58.911 43.478 0.00 0.00 43.10 2.57
950 1013 3.701664 CCCAGTTAAGGGCTTCTTTGAT 58.298 45.455 0.00 0.00 43.10 2.57
951 1014 3.154827 CCCAGTTAAGGGCTTCTTTGA 57.845 47.619 0.00 0.00 43.10 2.69
961 1024 1.065418 CAGTGCTACCCCCAGTTAAGG 60.065 57.143 0.00 0.00 0.00 2.69
962 1025 1.628846 ACAGTGCTACCCCCAGTTAAG 59.371 52.381 0.00 0.00 0.00 1.85
963 1026 1.737199 ACAGTGCTACCCCCAGTTAA 58.263 50.000 0.00 0.00 0.00 2.01
964 1027 2.225445 ACTACAGTGCTACCCCCAGTTA 60.225 50.000 0.00 0.00 0.00 2.24
965 1028 1.276622 CTACAGTGCTACCCCCAGTT 58.723 55.000 0.00 0.00 0.00 3.16
977 1046 2.795329 AGCCCCATGAAAACTACAGTG 58.205 47.619 0.00 0.00 0.00 3.66
1342 1427 4.389576 CCTTGAACGTGCAGCCGC 62.390 66.667 0.00 0.00 39.24 6.53
1865 1957 2.205022 TGCATACCTCTTGCAGCTTT 57.795 45.000 0.00 0.00 44.73 3.51
1924 2018 5.181748 ACTGAAGAGTAGACCAATGCAATC 58.818 41.667 0.00 0.00 0.00 2.67
2252 3104 2.223144 GCATGCTAGAACACACGACAAA 59.777 45.455 11.37 0.00 0.00 2.83
2253 3105 1.798223 GCATGCTAGAACACACGACAA 59.202 47.619 11.37 0.00 0.00 3.18
2458 4127 4.351874 TTGGAACAGGAAGTCTTACTGG 57.648 45.455 25.55 10.37 42.39 4.00
2522 4271 4.513406 AAGTAGTGGTCCAAAGTCCAAA 57.487 40.909 0.00 0.00 32.72 3.28
2523 4272 4.513406 AAAGTAGTGGTCCAAAGTCCAA 57.487 40.909 0.00 0.00 32.72 3.53
2524 4273 4.657039 ACTAAAGTAGTGGTCCAAAGTCCA 59.343 41.667 0.00 0.00 37.69 4.02
2525 4274 5.224821 ACTAAAGTAGTGGTCCAAAGTCC 57.775 43.478 0.00 0.00 37.69 3.85
2526 4275 6.465084 ATCACTAAAGTAGTGGTCCAAAGTC 58.535 40.000 13.91 0.00 46.78 3.01
2527 4276 6.435292 ATCACTAAAGTAGTGGTCCAAAGT 57.565 37.500 13.91 0.00 46.78 2.66
2579 4332 6.533730 ACAAGATGAAGTTCCAATGTACTCA 58.466 36.000 0.00 0.00 0.00 3.41
2752 4508 2.563179 GAGAGTGGAGCTTGTGAGGTTA 59.437 50.000 0.00 0.00 32.79 2.85
2856 4612 2.078849 AAATGACATGCGTGACGAGA 57.921 45.000 14.17 0.00 0.00 4.04
2860 4616 4.148696 CCTTTCAAAAATGACATGCGTGAC 59.851 41.667 14.17 7.25 0.00 3.67
2959 4717 6.092955 TGAGGAGTGAAGTGTTACGTTAAT 57.907 37.500 0.00 0.00 0.00 1.40
2965 4723 5.177696 GTGTTCATGAGGAGTGAAGTGTTAC 59.822 44.000 0.00 0.00 36.35 2.50
3073 4831 1.080093 GTGTCTCCGGTCGAATGCA 60.080 57.895 0.00 0.00 0.00 3.96
3127 4885 5.182001 AGTGATTTTAGCTTCTTCAACGCAT 59.818 36.000 0.00 0.00 0.00 4.73
3718 7226 2.100916 GCTAGAGATGCCCTAACGACAA 59.899 50.000 0.00 0.00 0.00 3.18
3911 7423 0.107361 GTGGGATAGGGTTTCCACCG 60.107 60.000 0.00 0.00 45.39 4.94
3947 7459 3.263425 GGCGAGAAATCATAGGGGGAATA 59.737 47.826 0.00 0.00 0.00 1.75
4286 7799 4.070552 GCTCCCTCTTCACCGCGT 62.071 66.667 4.92 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.