Multiple sequence alignment - TraesCS2B01G134400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G134400 chr2B 100.000 3562 0 0 1 3562 100850693 100847132 0.000000e+00 6578.0
1 TraesCS2B01G134400 chr2B 90.774 672 52 5 190 860 39331498 39332160 0.000000e+00 889.0
2 TraesCS2B01G134400 chr2B 94.595 185 10 0 4 188 39331001 39331185 1.620000e-73 287.0
3 TraesCS2B01G134400 chr2B 79.404 369 60 12 1339 1699 100920681 100920321 2.750000e-61 246.0
4 TraesCS2B01G134400 chr2B 89.888 89 9 0 3287 3375 652415557 652415469 8.080000e-22 115.0
5 TraesCS2B01G134400 chr2B 85.714 105 14 1 2669 2772 799713711 799713815 3.760000e-20 110.0
6 TraesCS2B01G134400 chr2D 91.347 913 61 10 2658 3562 64597202 64596300 0.000000e+00 1232.0
7 TraesCS2B01G134400 chr2D 89.184 980 75 18 858 1815 68858847 68857877 0.000000e+00 1194.0
8 TraesCS2B01G134400 chr2D 82.825 885 110 27 972 1824 64601917 64601043 0.000000e+00 754.0
9 TraesCS2B01G134400 chr2D 84.762 735 78 23 1892 2606 64597921 64597201 0.000000e+00 706.0
10 TraesCS2B01G134400 chr2D 85.088 570 56 17 1851 2395 68857706 68857141 4.020000e-154 555.0
11 TraesCS2B01G134400 chr2D 93.717 191 9 2 2 192 555118614 555118801 2.090000e-72 283.0
12 TraesCS2B01G134400 chr2D 84.270 267 34 8 1441 1700 68865781 68865516 1.640000e-63 254.0
13 TraesCS2B01G134400 chr2D 79.412 374 60 13 1339 1704 64606114 64605750 7.640000e-62 248.0
14 TraesCS2B01G134400 chr2D 83.032 277 39 8 1435 1704 69215757 69216032 9.880000e-61 244.0
15 TraesCS2B01G134400 chr2D 77.869 244 40 13 2664 2899 636062060 636061823 4.800000e-29 139.0
16 TraesCS2B01G134400 chr2D 80.814 172 19 7 2916 3087 68856730 68856573 4.830000e-24 122.0
17 TraesCS2B01G134400 chr2D 87.379 103 12 1 2671 2773 131357168 131357269 2.250000e-22 117.0
18 TraesCS2B01G134400 chr2D 87.952 83 9 1 3284 3366 594382889 594382970 2.930000e-16 97.1
19 TraesCS2B01G134400 chr2A 90.664 889 61 11 851 1718 65680749 65679862 0.000000e+00 1162.0
20 TraesCS2B01G134400 chr2A 84.031 764 92 23 972 1708 65685806 65685046 0.000000e+00 708.0
21 TraesCS2B01G134400 chr2A 78.093 776 97 47 1848 2576 65679823 65679074 1.180000e-114 424.0
22 TraesCS2B01G134400 chr2A 77.915 729 82 39 1892 2575 65683435 65682741 7.220000e-102 381.0
23 TraesCS2B01G134400 chr2A 74.889 677 128 30 1049 1707 65699961 65699309 1.630000e-68 270.0
24 TraesCS2B01G134400 chr6B 92.330 678 47 2 185 858 279204027 279204703 0.000000e+00 959.0
25 TraesCS2B01G134400 chr6B 90.441 680 58 4 183 858 68261659 68262335 0.000000e+00 889.0
26 TraesCS2B01G134400 chr6B 87.970 133 15 1 2768 2899 64858626 64858758 4.760000e-34 156.0
27 TraesCS2B01G134400 chr6B 88.235 85 6 3 3287 3370 559404909 559404828 8.140000e-17 99.0
28 TraesCS2B01G134400 chr3B 91.176 680 53 5 188 861 819548008 819547330 0.000000e+00 917.0
29 TraesCS2B01G134400 chr3B 90.588 680 55 4 188 861 819548986 819548310 0.000000e+00 893.0
30 TraesCS2B01G134400 chr3B 90.433 669 57 4 190 858 18761857 18761196 0.000000e+00 874.0
31 TraesCS2B01G134400 chr3B 94.764 191 8 2 2 192 651730511 651730323 2.690000e-76 296.0
32 TraesCS2B01G134400 chr3B 94.241 191 9 2 2 192 609895537 609895349 1.250000e-74 291.0
33 TraesCS2B01G134400 chr3B 94.565 184 10 0 2 185 659292219 659292402 5.820000e-73 285.0
34 TraesCS2B01G134400 chr7B 91.285 677 46 8 188 860 112125455 112124788 0.000000e+00 911.0
35 TraesCS2B01G134400 chr7B 94.652 187 10 0 2 188 112125949 112125763 1.250000e-74 291.0
36 TraesCS2B01G134400 chr5B 90.533 676 61 2 185 858 456389954 456390628 0.000000e+00 891.0
37 TraesCS2B01G134400 chr5B 90.164 671 56 5 188 857 655493353 655492692 0.000000e+00 865.0
38 TraesCS2B01G134400 chr5B 85.870 92 13 0 3284 3375 681738861 681738952 8.140000e-17 99.0
39 TraesCS2B01G134400 chrUn 93.583 187 12 0 2 188 36557800 36557986 2.710000e-71 279.0
40 TraesCS2B01G134400 chrUn 87.059 85 10 1 3287 3371 300167490 300167407 1.050000e-15 95.3
41 TraesCS2B01G134400 chrUn 86.486 74 8 1 3182 3255 360048311 360048240 2.950000e-11 80.5
42 TraesCS2B01G134400 chrUn 86.486 74 8 1 3182 3255 384037385 384037314 2.950000e-11 80.5
43 TraesCS2B01G134400 chrUn 84.810 79 10 1 3177 3255 38135580 38135504 1.060000e-10 78.7
44 TraesCS2B01G134400 chrUn 77.863 131 25 3 2772 2899 136982443 136982572 1.060000e-10 78.7
45 TraesCS2B01G134400 chrUn 85.526 76 7 3 3182 3255 232153316 232153389 3.810000e-10 76.8
46 TraesCS2B01G134400 chrUn 85.526 76 7 3 3182 3255 237972355 237972428 3.810000e-10 76.8
47 TraesCS2B01G134400 chrUn 85.135 74 9 1 3182 3255 247001404 247001333 1.370000e-09 75.0
48 TraesCS2B01G134400 chrUn 85.135 74 9 1 3182 3255 268873638 268873567 1.370000e-09 75.0
49 TraesCS2B01G134400 chrUn 85.135 74 9 1 3182 3255 359498041 359497970 1.370000e-09 75.0
50 TraesCS2B01G134400 chrUn 84.211 76 8 3 3182 3255 103856041 103856114 1.770000e-08 71.3
51 TraesCS2B01G134400 chr3D 93.583 187 12 0 2 188 418002901 418003087 2.710000e-71 279.0
52 TraesCS2B01G134400 chr3D 83.486 109 17 1 2666 2773 523190652 523190760 2.260000e-17 100.0
53 TraesCS2B01G134400 chr3D 86.076 79 9 1 3177 3255 112728944 112729020 2.280000e-12 84.2
54 TraesCS2B01G134400 chr3D 85.542 83 7 4 3173 3255 3081160 3081237 8.200000e-12 82.4
55 TraesCS2B01G134400 chr1B 93.583 187 12 0 2 188 465682356 465682542 2.710000e-71 279.0
56 TraesCS2B01G134400 chr1A 82.692 260 18 13 2667 2899 31856680 31856421 4.660000e-49 206.0
57 TraesCS2B01G134400 chr1A 89.189 74 6 1 3182 3255 550970839 550970768 1.360000e-14 91.6
58 TraesCS2B01G134400 chr1A 84.444 90 11 3 3284 3371 547968607 547968695 6.340000e-13 86.1
59 TraesCS2B01G134400 chr1A 86.076 79 7 3 3177 3255 533694504 533694430 8.200000e-12 82.4
60 TraesCS2B01G134400 chr7A 81.439 264 21 11 2663 2899 44885985 44885723 1.310000e-44 191.0
61 TraesCS2B01G134400 chr7A 92.308 130 9 1 2771 2899 5433432 5433561 2.180000e-42 183.0
62 TraesCS2B01G134400 chr7A 86.517 89 11 1 3293 3381 37119434 37119347 2.930000e-16 97.1
63 TraesCS2B01G134400 chr7A 84.946 93 13 1 3283 3375 581187066 581187157 3.790000e-15 93.5
64 TraesCS2B01G134400 chr7A 85.714 84 9 2 3172 3255 440649215 440649295 6.340000e-13 86.1
65 TraesCS2B01G134400 chr5D 81.609 261 20 14 2666 2899 149640176 149640435 1.310000e-44 191.0
66 TraesCS2B01G134400 chr5D 87.013 77 8 1 3179 3255 46310892 46310966 6.340000e-13 86.1
67 TraesCS2B01G134400 chr5D 87.838 74 7 1 3182 3255 481514039 481514110 6.340000e-13 86.1
68 TraesCS2B01G134400 chr5D 87.838 74 7 1 3182 3255 558509944 558509873 6.340000e-13 86.1
69 TraesCS2B01G134400 chr5D 79.464 112 15 8 2655 2764 546429597 546429702 4.930000e-09 73.1
70 TraesCS2B01G134400 chr7D 81.538 260 20 12 2667 2899 263669199 263668941 4.690000e-44 189.0
71 TraesCS2B01G134400 chr7D 89.516 124 12 1 2771 2893 161929994 161929871 4.760000e-34 156.0
72 TraesCS2B01G134400 chr7D 77.395 261 29 18 2667 2899 96078607 96078349 1.040000e-25 128.0
73 TraesCS2B01G134400 chr7D 89.873 79 6 1 3177 3255 232463748 232463672 2.260000e-17 100.0
74 TraesCS2B01G134400 chr7D 86.076 79 9 1 3177 3255 580374001 580374077 2.280000e-12 84.2
75 TraesCS2B01G134400 chr7D 82.178 101 14 3 2802 2899 631757482 631757383 2.280000e-12 84.2
76 TraesCS2B01G134400 chr7D 82.418 91 13 3 3287 3375 207059355 207059266 3.810000e-10 76.8
77 TraesCS2B01G134400 chr4A 80.077 261 23 10 2667 2899 601170908 601171167 2.200000e-37 167.0
78 TraesCS2B01G134400 chr4A 75.556 270 32 23 2664 2902 108873772 108873506 6.290000e-18 102.0
79 TraesCS2B01G134400 chr4A 80.952 126 17 3 2768 2891 574914914 574915034 3.790000e-15 93.5
80 TraesCS2B01G134400 chr4A 85.057 87 7 5 3170 3255 680050697 680050778 2.280000e-12 84.2
81 TraesCS2B01G134400 chr3A 88.321 137 14 2 2771 2905 107613929 107613793 2.850000e-36 163.0
82 TraesCS2B01G134400 chr3A 77.863 262 28 20 2666 2899 125499652 125499393 6.200000e-28 135.0
83 TraesCS2B01G134400 chr1D 78.626 262 28 8 2666 2899 25135524 25135785 7.970000e-32 148.0
84 TraesCS2B01G134400 chr1D 88.043 92 10 1 3284 3375 57474086 57473996 1.350000e-19 108.0
85 TraesCS2B01G134400 chr1D 83.636 110 14 4 2666 2773 306672253 306672146 2.260000e-17 100.0
86 TraesCS2B01G134400 chr1D 88.608 79 9 0 3285 3363 19620608 19620686 2.930000e-16 97.1
87 TraesCS2B01G134400 chr1D 84.270 89 13 1 3287 3375 16899503 16899416 6.340000e-13 86.1
88 TraesCS2B01G134400 chr1D 85.057 87 9 3 3170 3255 103480683 103480766 6.340000e-13 86.1
89 TraesCS2B01G134400 chr1D 84.091 88 14 0 3296 3383 491417502 491417589 6.340000e-13 86.1
90 TraesCS2B01G134400 chr1D 86.842 76 6 3 3182 3255 79539967 79539894 8.200000e-12 82.4
91 TraesCS2B01G134400 chr1D 84.810 79 10 1 3177 3255 20027539 20027463 1.060000e-10 78.7
92 TraesCS2B01G134400 chr1D 92.105 38 3 0 3287 3324 278947481 278947444 2.000000e-03 54.7
93 TraesCS2B01G134400 chr6A 75.735 272 36 20 2666 2908 313083381 313083651 3.760000e-20 110.0
94 TraesCS2B01G134400 chr6A 82.569 109 18 1 2666 2773 497996048 497995940 1.050000e-15 95.3
95 TraesCS2B01G134400 chr6A 87.838 74 7 1 3182 3255 26364371 26364442 6.340000e-13 86.1
96 TraesCS2B01G134400 chr6A 80.374 107 20 1 2662 2768 27087181 27087076 2.950000e-11 80.5
97 TraesCS2B01G134400 chr5A 75.758 264 36 19 2664 2899 626160794 626160531 1.350000e-19 108.0
98 TraesCS2B01G134400 chr5A 88.235 85 9 1 3291 3375 114709394 114709477 2.260000e-17 100.0
99 TraesCS2B01G134400 chr4D 75.573 262 36 14 2665 2899 117211063 117210803 1.750000e-18 104.0
100 TraesCS2B01G134400 chr4D 83.962 106 15 2 2669 2773 472213847 472213951 2.260000e-17 100.0
101 TraesCS2B01G134400 chr4D 85.393 89 13 0 3287 3375 474374223 474374311 3.790000e-15 93.5
102 TraesCS2B01G134400 chr4D 86.747 83 9 1 3173 3255 58643750 58643830 1.360000e-14 91.6
103 TraesCS2B01G134400 chr4D 80.682 88 17 0 2772 2859 330170045 330170132 6.380000e-08 69.4
104 TraesCS2B01G134400 chr6D 86.170 94 13 0 2667 2760 270873965 270874058 6.290000e-18 102.0
105 TraesCS2B01G134400 chr6D 87.838 74 7 1 3182 3255 27451562 27451633 6.340000e-13 86.1
106 TraesCS2B01G134400 chr6D 85.185 81 8 3 3177 3255 24998361 24998283 2.950000e-11 80.5
107 TraesCS2B01G134400 chr6D 85.526 76 7 3 3182 3255 143276520 143276593 3.810000e-10 76.8
108 TraesCS2B01G134400 chr6D 85.526 76 7 3 3182 3255 334718538 334718465 3.810000e-10 76.8
109 TraesCS2B01G134400 chr6D 80.851 94 14 4 3284 3375 468888333 468888424 1.770000e-08 71.3
110 TraesCS2B01G134400 chr6D 80.392 102 11 6 2672 2772 319665494 319665401 6.380000e-08 69.4
111 TraesCS2B01G134400 chr4B 87.500 80 8 1 3176 3255 20603912 20603989 1.360000e-14 91.6
112 TraesCS2B01G134400 chr4B 85.714 84 8 4 3174 3255 662013669 662013750 6.340000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G134400 chr2B 100847132 100850693 3561 True 6578.000000 6578 100.000000 1 3562 1 chr2B.!!$R1 3561
1 TraesCS2B01G134400 chr2B 39331001 39332160 1159 False 588.000000 889 92.684500 4 860 2 chr2B.!!$F2 856
2 TraesCS2B01G134400 chr2D 64596300 64606114 9814 True 735.000000 1232 84.586500 972 3562 4 chr2D.!!$R3 2590
3 TraesCS2B01G134400 chr2D 68856573 68858847 2274 True 623.666667 1194 85.028667 858 3087 3 chr2D.!!$R4 2229
4 TraesCS2B01G134400 chr2A 65679074 65685806 6732 True 668.750000 1162 82.675750 851 2576 4 chr2A.!!$R2 1725
5 TraesCS2B01G134400 chr2A 65699309 65699961 652 True 270.000000 270 74.889000 1049 1707 1 chr2A.!!$R1 658
6 TraesCS2B01G134400 chr6B 279204027 279204703 676 False 959.000000 959 92.330000 185 858 1 chr6B.!!$F3 673
7 TraesCS2B01G134400 chr6B 68261659 68262335 676 False 889.000000 889 90.441000 183 858 1 chr6B.!!$F2 675
8 TraesCS2B01G134400 chr3B 819547330 819548986 1656 True 905.000000 917 90.882000 188 861 2 chr3B.!!$R4 673
9 TraesCS2B01G134400 chr3B 18761196 18761857 661 True 874.000000 874 90.433000 190 858 1 chr3B.!!$R1 668
10 TraesCS2B01G134400 chr7B 112124788 112125949 1161 True 601.000000 911 92.968500 2 860 2 chr7B.!!$R1 858
11 TraesCS2B01G134400 chr5B 456389954 456390628 674 False 891.000000 891 90.533000 185 858 1 chr5B.!!$F1 673
12 TraesCS2B01G134400 chr5B 655492692 655493353 661 True 865.000000 865 90.164000 188 857 1 chr5B.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 2025 0.588737 TCGCGTGCACTGCATTTTAA 59.411 45.0 25.5 7.64 41.91 1.52 F
1888 9320 0.370273 GCCGTGTTATTGACTCGCTG 59.630 55.0 0.0 0.00 42.28 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 9644 0.109412 GTCAGTTCTTGCATGCAGGC 60.109 55.0 23.98 18.05 0.0 4.85 R
3385 11071 0.667184 GGGCGGTTTTGATGTTGCAG 60.667 55.0 0.00 0.00 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.122227 ATTGTGCAAGTGTTTGGCCT 58.878 45.000 3.32 0.00 34.79 5.19
73 74 1.210478 AGATGTCGCAAGGCTATTGGT 59.790 47.619 0.00 0.00 46.88 3.67
113 114 1.524621 CCCAGGTATGCTTGGCTCG 60.525 63.158 6.42 0.00 40.20 5.03
147 148 6.647334 TGCATTGGAGTTGAAAGAATTGTA 57.353 33.333 0.00 0.00 0.00 2.41
158 159 6.647334 TGAAAGAATTGTACAAAGGCATGA 57.353 33.333 13.23 0.00 0.00 3.07
510 1801 4.263025 CGGGGGAGATCATCATGATTTGTA 60.263 45.833 5.16 0.00 37.20 2.41
716 2025 0.588737 TCGCGTGCACTGCATTTTAA 59.411 45.000 25.50 7.64 41.91 1.52
726 2035 2.811431 ACTGCATTTTAACGCACTGCTA 59.189 40.909 0.00 0.00 33.75 3.49
741 2052 3.081133 CTAGAATTGCGCGCGTGT 58.919 55.556 32.35 13.75 0.00 4.49
816 2128 2.202388 CGCGTGCTGCAAATCAGG 60.202 61.111 2.77 0.00 46.97 3.86
883 5091 2.995258 GTTACCAAATTCCGTACGAGCA 59.005 45.455 18.76 0.00 0.00 4.26
909 5117 4.388080 CACGGTCACGGACGCGTA 62.388 66.667 13.97 0.00 46.48 4.42
912 5120 2.202401 GGTCACGGACGCGTAGAC 60.202 66.667 13.97 17.51 32.65 2.59
922 5130 2.805546 GCGTAGACCGAGCCATCA 59.194 61.111 0.00 0.00 39.56 3.07
933 5141 1.804372 CGAGCCATCAACCAGAGCTAC 60.804 57.143 0.00 0.00 32.97 3.58
934 5142 1.484240 GAGCCATCAACCAGAGCTACT 59.516 52.381 0.00 0.00 32.97 2.57
946 5154 2.124942 GCTACTGAGCCAGGGTGC 60.125 66.667 0.00 0.00 43.49 5.01
947 5155 2.185350 CTACTGAGCCAGGGTGCG 59.815 66.667 0.00 0.00 35.51 5.34
948 5156 4.082523 TACTGAGCCAGGGTGCGC 62.083 66.667 0.00 0.00 35.51 6.09
968 5176 3.879903 CGTACATACGTCGTCGCC 58.120 61.111 0.00 0.00 44.13 5.54
970 5178 2.023181 TACATACGTCGTCGCCGC 59.977 61.111 0.00 0.00 41.18 6.53
971 5179 2.748843 TACATACGTCGTCGCCGCA 61.749 57.895 0.00 0.00 41.18 5.69
972 5180 2.636207 TACATACGTCGTCGCCGCAG 62.636 60.000 0.00 0.00 41.18 5.18
1072 5305 3.691342 TCCACGTCCCCTTCAGCG 61.691 66.667 0.00 0.00 0.00 5.18
1102 5335 3.653009 ACTTCGTCGCGTCCACGA 61.653 61.111 16.28 16.28 44.36 4.35
1130 5363 2.125912 CCACGTCTTCTCCTGCGG 60.126 66.667 0.00 0.00 0.00 5.69
1131 5364 2.125912 CACGTCTTCTCCTGCGGG 60.126 66.667 4.71 4.71 0.00 6.13
1167 5403 2.230940 CCGCTACAAGTCCATCGCG 61.231 63.158 0.00 0.00 40.22 5.87
1177 5413 4.175489 CCATCGCGGACGTCTCGT 62.175 66.667 22.66 12.35 45.10 4.18
1284 5532 3.168963 CGCGATCTACTTCTTTGACGAA 58.831 45.455 0.00 0.00 0.00 3.85
1531 5791 4.379243 CGGAGAAGGGCGCAGTGT 62.379 66.667 10.83 0.00 0.00 3.55
1720 5980 2.413765 CCGCTCCTAGTTCTCGCC 59.586 66.667 0.00 0.00 0.00 5.54
1732 5992 0.602638 TTCTCGCCACGCATCTGTTT 60.603 50.000 0.00 0.00 0.00 2.83
1733 5993 0.602638 TCTCGCCACGCATCTGTTTT 60.603 50.000 0.00 0.00 0.00 2.43
1734 5994 1.075542 CTCGCCACGCATCTGTTTTA 58.924 50.000 0.00 0.00 0.00 1.52
1735 5995 1.061131 CTCGCCACGCATCTGTTTTAG 59.939 52.381 0.00 0.00 0.00 1.85
1737 5997 1.196808 CGCCACGCATCTGTTTTAGTT 59.803 47.619 0.00 0.00 0.00 2.24
1744 6004 6.291585 CCACGCATCTGTTTTAGTTGTTTTTC 60.292 38.462 0.00 0.00 0.00 2.29
1816 6078 0.512952 CGAGTCGTTTTGCCTCTTGG 59.487 55.000 3.82 0.00 0.00 3.61
1828 6090 2.510768 CCTCTTGGCACGGTATCTAC 57.489 55.000 0.00 0.00 0.00 2.59
1830 6092 2.223829 CCTCTTGGCACGGTATCTACTG 60.224 54.545 0.00 0.00 38.52 2.74
1833 6095 1.108776 TGGCACGGTATCTACTGGAC 58.891 55.000 1.52 0.00 36.89 4.02
1845 6177 7.882271 CGGTATCTACTGGACTATACCTACTTT 59.118 40.741 0.00 0.00 41.06 2.66
1846 6178 9.012161 GGTATCTACTGGACTATACCTACTTTG 57.988 40.741 0.00 0.00 40.39 2.77
1884 9316 1.392510 GTTCGGCCGTGTTATTGACTC 59.607 52.381 27.15 0.00 0.00 3.36
1888 9320 0.370273 GCCGTGTTATTGACTCGCTG 59.630 55.000 0.00 0.00 42.28 5.18
1904 9339 2.704108 CTGCATGCAGCTAAGGAGG 58.296 57.895 33.18 9.09 45.94 4.30
1936 9371 3.448267 CAGACATCCACTGCATCGT 57.552 52.632 0.00 0.00 0.00 3.73
1940 9375 1.662629 GACATCCACTGCATCGTCTTG 59.337 52.381 0.00 0.00 0.00 3.02
1944 9379 0.667487 CCACTGCATCGTCTTGTCGT 60.667 55.000 0.00 0.00 0.00 4.34
2029 9473 3.423154 CGACAAGGCGACCAAGGC 61.423 66.667 0.00 0.00 0.00 4.35
2145 9614 1.153429 GCAACGCCGGTTCTCCTAT 60.153 57.895 1.90 0.00 32.98 2.57
2165 9644 6.028368 CCTATACAAGAACCTATATGACGCG 58.972 44.000 3.53 3.53 0.00 6.01
2169 9648 1.000163 AGAACCTATATGACGCGCCTG 60.000 52.381 5.73 0.00 0.00 4.85
2188 9667 0.445436 GCATGCAAGAACTGACGAGG 59.555 55.000 14.21 0.00 0.00 4.63
2200 9682 1.197721 CTGACGAGGCAATGTGGTTTC 59.802 52.381 0.00 0.00 0.00 2.78
2270 9765 0.322546 TCAGCTCAGAGTGGTCGCTA 60.323 55.000 0.00 0.00 0.00 4.26
2612 10290 2.054799 AGGAGGTTTAGCCAGTTCACA 58.945 47.619 0.00 0.00 40.61 3.58
2613 10291 2.152016 GGAGGTTTAGCCAGTTCACAC 58.848 52.381 0.00 0.00 40.61 3.82
2614 10292 2.486548 GGAGGTTTAGCCAGTTCACACA 60.487 50.000 0.00 0.00 40.61 3.72
2615 10293 2.548480 GAGGTTTAGCCAGTTCACACAC 59.452 50.000 0.00 0.00 40.61 3.82
2617 10295 2.032924 GGTTTAGCCAGTTCACACACAC 59.967 50.000 0.00 0.00 37.17 3.82
2619 10297 1.948104 TAGCCAGTTCACACACACAC 58.052 50.000 0.00 0.00 0.00 3.82
2620 10298 0.035534 AGCCAGTTCACACACACACA 60.036 50.000 0.00 0.00 0.00 3.72
2621 10299 0.098728 GCCAGTTCACACACACACAC 59.901 55.000 0.00 0.00 0.00 3.82
2623 10301 1.130373 CCAGTTCACACACACACACAC 59.870 52.381 0.00 0.00 0.00 3.82
2628 10306 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2629 10307 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2630 10308 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2631 10309 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2632 10310 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2633 10311 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2634 10312 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2635 10313 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2636 10314 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2637 10315 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2638 10316 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2639 10317 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2640 10318 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2641 10319 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2642 10320 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2643 10321 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2644 10322 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2645 10323 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2646 10324 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2647 10325 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2648 10326 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2649 10327 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2650 10328 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2651 10329 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2652 10330 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2653 10331 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2654 10332 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
2655 10333 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
2656 10334 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
2657 10335 4.509970 ACACACACACACACACACATATAC 59.490 41.667 0.00 0.00 0.00 1.47
2658 10336 4.509600 CACACACACACACACACATATACA 59.490 41.667 0.00 0.00 0.00 2.29
2687 10365 7.119407 GGATGTACTCCCTCTGTTTCTTTTTAC 59.881 40.741 0.00 0.00 38.19 2.01
2693 10371 4.821805 CCCTCTGTTTCTTTTTACTCTGCA 59.178 41.667 0.00 0.00 0.00 4.41
2891 10570 4.766404 ATACAGGAGCAAAAAGAAACGG 57.234 40.909 0.00 0.00 0.00 4.44
2977 10656 3.837213 AATCATCAGTGCTTGTTTCCG 57.163 42.857 0.00 0.00 0.00 4.30
2981 10660 1.021202 TCAGTGCTTGTTTCCGTTGG 58.979 50.000 0.00 0.00 0.00 3.77
2983 10662 1.403679 CAGTGCTTGTTTCCGTTGGAA 59.596 47.619 0.00 0.00 40.27 3.53
3017 10696 1.568504 TAAGGGAGTGGCTAGTGGTG 58.431 55.000 0.00 0.00 0.00 4.17
3043 10722 6.878389 TGAATTTAAAATTTGGGTCAGGCATC 59.122 34.615 0.00 0.00 0.00 3.91
3045 10724 5.659440 TTAAAATTTGGGTCAGGCATCTC 57.341 39.130 0.00 0.00 0.00 2.75
3185 10871 2.764572 GGTAGGCTAAAGTACTGCTCCA 59.235 50.000 0.00 0.00 0.00 3.86
3187 10873 3.828875 AGGCTAAAGTACTGCTCCATC 57.171 47.619 0.00 0.00 0.00 3.51
3200 10886 5.930135 ACTGCTCCATCCGTTTCTAAATAT 58.070 37.500 0.00 0.00 0.00 1.28
3236 10922 7.495901 AGAGATTCCAATGCGGACTATATATG 58.504 38.462 0.00 0.00 46.36 1.78
3237 10923 7.343057 AGAGATTCCAATGCGGACTATATATGA 59.657 37.037 0.00 0.00 46.36 2.15
3241 10927 7.712204 TCCAATGCGGACTATATATGAAGTA 57.288 36.000 0.00 0.00 39.64 2.24
3242 10928 7.544622 TCCAATGCGGACTATATATGAAGTAC 58.455 38.462 0.00 0.00 39.64 2.73
3258 10944 6.618287 TGAAGTACAAAATGAGTGAAGGTG 57.382 37.500 0.00 0.00 0.00 4.00
3262 10948 6.226787 AGTACAAAATGAGTGAAGGTGAGAG 58.773 40.000 0.00 0.00 0.00 3.20
3266 10952 1.633774 TGAGTGAAGGTGAGAGGGAC 58.366 55.000 0.00 0.00 0.00 4.46
3280 10966 6.389906 GTGAGAGGGACCATGTTAAAATTTG 58.610 40.000 0.00 0.00 0.00 2.32
3283 10969 3.056179 AGGGACCATGTTAAAATTTGCGG 60.056 43.478 0.00 0.00 0.00 5.69
3285 10971 4.082136 GGGACCATGTTAAAATTTGCGGTA 60.082 41.667 0.00 0.00 0.00 4.02
3342 11028 7.543172 TCTGCATGCAGTTTTTATTGAAATCTC 59.457 33.333 39.08 0.00 43.96 2.75
3343 11029 7.380536 TGCATGCAGTTTTTATTGAAATCTCT 58.619 30.769 18.46 0.00 0.00 3.10
3375 11061 9.303116 AGACTTACATTTAGAAACAGAGAGAGA 57.697 33.333 0.00 0.00 0.00 3.10
3385 11071 6.733145 AGAAACAGAGAGAGAAAAATGTTGC 58.267 36.000 0.00 0.00 31.67 4.17
3403 11089 1.284297 GCTGCAACATCAAAACCGCC 61.284 55.000 0.00 0.00 0.00 6.13
3420 11106 1.204467 CGCCCCAGCACACAAAAATAT 59.796 47.619 0.00 0.00 39.83 1.28
3475 11161 5.576384 TGAGCATCAACAAACAAAGACAAAC 59.424 36.000 0.00 0.00 45.97 2.93
3526 11212 0.744281 AACCACAAAACAGAAGCCCG 59.256 50.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.712081 CCTTGCGACATCTTCAGCG 59.288 57.895 0.00 0.00 0.00 5.18
73 74 1.083489 CCCGCGAGCTTTGTTCATAA 58.917 50.000 8.23 0.00 0.00 1.90
113 114 5.009310 TCAACTCCAATGCATGCAATCTATC 59.991 40.000 26.68 0.00 0.00 2.08
147 148 2.291209 TGTCCATGTCATGCCTTTGT 57.709 45.000 7.35 0.00 0.00 2.83
186 498 1.536766 GCTTGCAAAATCCCAAAAGCC 59.463 47.619 0.00 0.00 35.19 4.35
372 1663 2.529389 ACCCTTTCAGCCCTCCGT 60.529 61.111 0.00 0.00 0.00 4.69
437 1728 8.610896 CAATGAGATCCTTCTTGAGTTCATTAC 58.389 37.037 0.00 0.00 33.28 1.89
489 1780 4.692625 CGTACAAATCATGATGATCTCCCC 59.307 45.833 9.46 0.00 35.76 4.81
490 1781 5.300752 ACGTACAAATCATGATGATCTCCC 58.699 41.667 9.46 0.00 35.76 4.30
492 1783 7.909267 TCAAACGTACAAATCATGATGATCTC 58.091 34.615 9.46 0.11 35.76 2.75
510 1801 6.791303 AGTTCAACAATACAACATCAAACGT 58.209 32.000 0.00 0.00 0.00 3.99
602 1896 8.890124 AATCACAAACATCATTCACAATCAAA 57.110 26.923 0.00 0.00 0.00 2.69
726 2035 2.127270 CAACACGCGCGCAATTCT 60.127 55.556 32.58 6.00 0.00 2.40
741 2052 1.154054 CAGCCGCGCTAAAATGCAA 60.154 52.632 5.56 0.00 36.40 4.08
789 2101 2.357396 AGCACGCGCAACATCAGA 60.357 55.556 5.73 0.00 42.27 3.27
883 5091 3.062042 GTCCGTGACCGTGATTTAAGTT 58.938 45.455 0.00 0.00 0.00 2.66
909 5117 0.904865 TCTGGTTGATGGCTCGGTCT 60.905 55.000 0.00 0.00 0.00 3.85
912 5120 1.817099 GCTCTGGTTGATGGCTCGG 60.817 63.158 0.00 0.00 0.00 4.63
939 5147 2.899345 TATGTACGCTGCGCACCCTG 62.899 60.000 23.51 0.00 0.00 4.45
940 5148 2.717044 TATGTACGCTGCGCACCCT 61.717 57.895 23.51 11.93 0.00 4.34
941 5149 2.202824 TATGTACGCTGCGCACCC 60.203 61.111 23.51 7.89 0.00 4.61
963 5171 2.434359 AAACCTAGCTGCGGCGAC 60.434 61.111 12.98 2.02 44.37 5.19
964 5172 2.125673 GAAACCTAGCTGCGGCGA 60.126 61.111 12.98 5.90 44.37 5.54
968 5176 0.992802 GAAGTCGAAACCTAGCTGCG 59.007 55.000 0.00 0.00 0.00 5.18
970 5178 2.631418 TCGAAGTCGAAACCTAGCTG 57.369 50.000 0.00 0.00 46.30 4.24
1284 5532 1.944024 CGTATCGTCCTCTTGCTCTCT 59.056 52.381 0.00 0.00 0.00 3.10
1372 5626 3.933722 CTCCTGGCCGGCGATGAT 61.934 66.667 22.54 0.00 0.00 2.45
1708 5968 0.872021 GATGCGTGGCGAGAACTAGG 60.872 60.000 0.00 0.00 0.00 3.02
1712 5972 1.291877 AACAGATGCGTGGCGAGAAC 61.292 55.000 0.00 0.00 0.00 3.01
1720 5980 6.472163 AGAAAAACAACTAAAACAGATGCGTG 59.528 34.615 0.00 0.00 30.32 5.34
1744 6004 9.476202 CACCAAAGGTAGATTTTAAAGGAAAAG 57.524 33.333 0.00 0.00 35.73 2.27
1753 6013 9.802039 AATCTTGTACACCAAAGGTAGATTTTA 57.198 29.630 8.63 0.00 34.34 1.52
1816 6078 4.155644 GGTATAGTCCAGTAGATACCGTGC 59.844 50.000 0.00 0.00 35.72 5.34
1824 6086 6.832384 CACCAAAGTAGGTATAGTCCAGTAGA 59.168 42.308 0.00 0.00 40.77 2.59
1825 6087 6.606395 ACACCAAAGTAGGTATAGTCCAGTAG 59.394 42.308 0.00 0.00 40.77 2.57
1828 6090 5.934402 ACACCAAAGTAGGTATAGTCCAG 57.066 43.478 0.00 0.00 40.77 3.86
1830 6092 6.780457 TGTACACCAAAGTAGGTATAGTCC 57.220 41.667 0.00 0.00 40.77 3.85
1833 6095 8.861086 AGATCATGTACACCAAAGTAGGTATAG 58.139 37.037 0.00 0.00 40.77 1.31
1888 9320 1.527844 CCCCTCCTTAGCTGCATGC 60.528 63.158 11.82 11.82 43.29 4.06
1904 9339 1.520342 GTCTGCTCTGTCGATGCCC 60.520 63.158 0.00 0.00 0.00 5.36
1936 9371 0.250597 TCTGGAGTCCGACGACAAGA 60.251 55.000 4.30 0.00 41.87 3.02
1940 9375 1.433879 CCATCTGGAGTCCGACGAC 59.566 63.158 4.30 0.00 39.50 4.34
1944 9379 3.621225 CAGCCATCTGGAGTCCGA 58.379 61.111 4.30 5.43 36.68 4.55
2011 9446 2.742372 CCTTGGTCGCCTTGTCGG 60.742 66.667 0.00 0.00 0.00 4.79
2035 9479 2.728817 GGAGGGTATCGCTGTCGG 59.271 66.667 0.00 0.00 36.13 4.79
2079 9529 4.389576 CTTCGCTGTTGCCGGCAC 62.390 66.667 32.95 24.14 43.56 5.01
2102 9558 4.811557 CCTTTCAAGAATGATAGGGACGAC 59.188 45.833 7.25 0.00 45.74 4.34
2145 9614 3.551454 GGCGCGTCATATAGGTTCTTGTA 60.551 47.826 5.47 0.00 0.00 2.41
2160 9635 4.824166 CTTGCATGCAGGCGCGTC 62.824 66.667 21.50 0.21 42.97 5.19
2165 9644 0.109412 GTCAGTTCTTGCATGCAGGC 60.109 55.000 23.98 18.05 0.00 4.85
2169 9648 0.445436 CCTCGTCAGTTCTTGCATGC 59.555 55.000 11.82 11.82 0.00 4.06
2188 9667 6.902224 AACACTTTTAAGAAACCACATTGC 57.098 33.333 0.00 0.00 0.00 3.56
2200 9682 4.101942 TGCACGCAGAAAACACTTTTAAG 58.898 39.130 0.00 0.00 31.94 1.85
2248 9743 0.735632 CGACCACTCTGAGCTGAAGC 60.736 60.000 4.19 0.00 42.49 3.86
2299 9794 1.542915 GCCAGAACTCTACCGTGTACA 59.457 52.381 0.00 0.00 0.00 2.90
2309 9804 3.241530 TGGTGCCGCCAGAACTCT 61.242 61.111 0.00 0.00 43.61 3.24
2588 10266 2.942604 ACTGGCTAAACCTCCTAGGA 57.057 50.000 11.98 11.98 37.67 2.94
2589 10267 2.838202 TGAACTGGCTAAACCTCCTAGG 59.162 50.000 0.82 0.82 42.49 3.02
2612 10290 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2613 10291 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2614 10292 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2615 10293 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2617 10295 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2619 10297 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2620 10298 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2621 10299 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2623 10301 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2628 10306 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2629 10307 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2630 10308 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2631 10309 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2632 10310 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2633 10311 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2634 10312 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2635 10313 4.509600 TGTATATGTGTGTGTGTGTGTGTG 59.490 41.667 0.00 0.00 0.00 3.82
2636 10314 4.698575 TGTATATGTGTGTGTGTGTGTGT 58.301 39.130 0.00 0.00 0.00 3.72
2637 10315 5.861222 ATGTATATGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
2638 10316 6.071051 TCCTATGTATATGTGTGTGTGTGTGT 60.071 38.462 0.00 0.00 0.00 3.72
2639 10317 6.337356 TCCTATGTATATGTGTGTGTGTGTG 58.663 40.000 0.00 0.00 0.00 3.82
2640 10318 6.538945 TCCTATGTATATGTGTGTGTGTGT 57.461 37.500 0.00 0.00 0.00 3.72
2641 10319 6.986231 ACATCCTATGTATATGTGTGTGTGTG 59.014 38.462 0.00 0.00 42.78 3.82
2642 10320 7.124573 ACATCCTATGTATATGTGTGTGTGT 57.875 36.000 0.00 0.00 42.78 3.72
2643 10321 8.360390 AGTACATCCTATGTATATGTGTGTGTG 58.640 37.037 3.28 0.00 46.39 3.82
2644 10322 8.478775 AGTACATCCTATGTATATGTGTGTGT 57.521 34.615 3.28 0.00 46.39 3.72
2645 10323 8.029522 GGAGTACATCCTATGTATATGTGTGTG 58.970 40.741 3.28 0.00 46.39 3.82
2646 10324 8.123639 GGAGTACATCCTATGTATATGTGTGT 57.876 38.462 3.28 0.00 46.39 3.72
2656 10334 4.544564 ACAGAGGGAGTACATCCTATGT 57.455 45.455 21.44 21.44 46.86 2.29
2687 10365 8.218338 ACTCAGACCAAATTTTATATGCAGAG 57.782 34.615 0.00 0.00 0.00 3.35
2693 10371 8.814038 AGCTTGACTCAGACCAAATTTTATAT 57.186 30.769 0.00 0.00 0.00 0.86
2700 10378 4.210331 ACAAAGCTTGACTCAGACCAAAT 58.790 39.130 0.00 0.00 0.00 2.32
2705 10383 5.993106 ACTTTACAAAGCTTGACTCAGAC 57.007 39.130 0.00 0.00 39.63 3.51
2708 10386 5.339990 GCAAACTTTACAAAGCTTGACTCA 58.660 37.500 17.68 0.00 42.00 3.41
2861 10539 9.487790 TTCTTTTTGCTCCTGTATAAAATTTGG 57.512 29.630 0.00 0.00 0.00 3.28
2874 10552 2.230660 CCTCCGTTTCTTTTTGCTCCT 58.769 47.619 0.00 0.00 0.00 3.69
2891 10570 3.629398 CCATTGCATTGTAAGACTCCCTC 59.371 47.826 7.75 0.00 0.00 4.30
2977 10656 4.617253 AATTAAGGGCCACTTTTCCAAC 57.383 40.909 6.18 0.00 40.64 3.77
3017 10696 5.994668 TGCCTGACCCAAATTTTAAATTCAC 59.005 36.000 3.23 0.00 0.00 3.18
3068 10747 1.643310 TTGCATTTTGCCCTAGCCTT 58.357 45.000 0.00 0.00 44.23 4.35
3069 10748 1.643310 TTTGCATTTTGCCCTAGCCT 58.357 45.000 0.00 0.00 44.23 4.58
3116 10802 5.523916 GGTGTTCGAATGCATGAAGTATACT 59.476 40.000 0.00 0.00 0.00 2.12
3200 10886 6.535150 CGCATTGGAATCTCTACAAAGACTTA 59.465 38.462 0.00 0.00 0.00 2.24
3236 10922 6.706270 TCTCACCTTCACTCATTTTGTACTTC 59.294 38.462 0.00 0.00 0.00 3.01
3237 10923 6.591935 TCTCACCTTCACTCATTTTGTACTT 58.408 36.000 0.00 0.00 0.00 2.24
3241 10927 4.392940 CCTCTCACCTTCACTCATTTTGT 58.607 43.478 0.00 0.00 0.00 2.83
3242 10928 3.755378 CCCTCTCACCTTCACTCATTTTG 59.245 47.826 0.00 0.00 0.00 2.44
3258 10944 5.410924 GCAAATTTTAACATGGTCCCTCTC 58.589 41.667 0.00 0.00 0.00 3.20
3262 10948 3.258228 CCGCAAATTTTAACATGGTCCC 58.742 45.455 0.00 0.00 0.00 4.46
3318 11004 7.380536 AGAGATTTCAATAAAAACTGCATGCA 58.619 30.769 21.29 21.29 30.80 3.96
3350 11036 9.915629 TTCTCTCTCTGTTTCTAAATGTAAGTC 57.084 33.333 0.00 0.00 0.00 3.01
3385 11071 0.667184 GGGCGGTTTTGATGTTGCAG 60.667 55.000 0.00 0.00 0.00 4.41
3403 11089 6.757897 TCTCTAATATTTTTGTGTGCTGGG 57.242 37.500 0.00 0.00 0.00 4.45
3440 11126 5.518848 TGTTGATGCTCACTTGATTTGTT 57.481 34.783 0.00 0.00 0.00 2.83
3442 11128 5.749588 TGTTTGTTGATGCTCACTTGATTTG 59.250 36.000 0.00 0.00 0.00 2.32
3490 11176 3.616821 GTGGTTGCAAAGGTTTGAGTTTC 59.383 43.478 0.00 0.00 40.55 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.