Multiple sequence alignment - TraesCS2B01G134200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G134200 chr2B 100.000 5957 0 0 1 5957 100339647 100333691 0.000000e+00 11001.0
1 TraesCS2B01G134200 chr2B 99.074 108 1 0 4179 4286 100335415 100335308 1.690000e-45 195.0
2 TraesCS2B01G134200 chr2B 99.074 108 1 0 4233 4340 100335469 100335362 1.690000e-45 195.0
3 TraesCS2B01G134200 chr2B 98.148 54 1 0 4179 4232 100335361 100335308 1.770000e-15 95.3
4 TraesCS2B01G134200 chr2B 98.148 54 1 0 4287 4340 100335469 100335416 1.770000e-15 95.3
5 TraesCS2B01G134200 chr2A 95.385 3770 132 16 493 4225 65670255 65666491 0.000000e+00 5960.0
6 TraesCS2B01G134200 chr2A 96.310 786 23 3 4292 5075 65666532 65665751 0.000000e+00 1286.0
7 TraesCS2B01G134200 chr2A 91.000 400 30 5 5077 5475 65665709 65665315 8.790000e-148 534.0
8 TraesCS2B01G134200 chr2A 93.521 355 21 1 1 355 65670612 65670260 1.470000e-145 527.0
9 TraesCS2B01G134200 chr2A 90.842 273 20 5 5555 5823 65665294 65665023 1.580000e-95 361.0
10 TraesCS2B01G134200 chr2A 98.000 150 1 2 352 499 377320063 377320212 5.920000e-65 259.0
11 TraesCS2B01G134200 chr2A 84.942 259 33 6 998 1254 43143386 43143640 2.130000e-64 257.0
12 TraesCS2B01G134200 chr2A 92.647 136 6 4 752 883 65670139 65670004 6.090000e-45 193.0
13 TraesCS2B01G134200 chr2A 89.423 104 10 1 5468 5570 361381616 361381719 4.850000e-26 130.0
14 TraesCS2B01G134200 chr2A 89.024 82 8 1 5877 5957 65664552 65664471 3.800000e-17 100.0
15 TraesCS2B01G134200 chr2D 96.198 2367 78 9 493 2851 64187489 64185127 0.000000e+00 3862.0
16 TraesCS2B01G134200 chr2D 95.745 1269 44 5 2972 4230 64185118 64183850 0.000000e+00 2036.0
17 TraesCS2B01G134200 chr2D 88.158 1216 86 36 4292 5469 64183896 64182701 0.000000e+00 1395.0
18 TraesCS2B01G134200 chr2D 95.775 355 13 1 1 355 64187846 64187494 6.700000e-159 571.0
19 TraesCS2B01G134200 chr2D 92.697 178 10 2 5647 5823 64182466 64182291 2.760000e-63 254.0
20 TraesCS2B01G134200 chr2D 89.630 135 11 2 752 883 64187373 64187239 1.030000e-37 169.0
21 TraesCS2B01G134200 chr2D 90.000 100 10 0 5464 5563 117843131 117843032 4.850000e-26 130.0
22 TraesCS2B01G134200 chr2D 93.827 81 5 0 5877 5957 64182080 64182000 8.110000e-24 122.0
23 TraesCS2B01G134200 chr2D 96.923 65 2 0 5815 5879 64182266 64182202 6.310000e-20 110.0
24 TraesCS2B01G134200 chr5D 81.795 390 47 13 4831 5200 262397798 262397413 7.500000e-79 305.0
25 TraesCS2B01G134200 chr5A 98.000 150 1 2 352 499 6212906 6212757 5.920000e-65 259.0
26 TraesCS2B01G134200 chr5A 98.000 150 1 2 352 499 299774100 299774249 5.920000e-65 259.0
27 TraesCS2B01G134200 chr5A 95.506 89 4 0 5468 5556 218994215 218994303 6.220000e-30 143.0
28 TraesCS2B01G134200 chr4B 98.639 147 1 1 352 497 413735070 413734924 5.920000e-65 259.0
29 TraesCS2B01G134200 chr4B 94.382 89 5 0 5469 5557 668489827 668489915 2.900000e-28 137.0
30 TraesCS2B01G134200 chr4B 83.133 83 12 2 3212 3293 146558509 146558428 2.300000e-09 75.0
31 TraesCS2B01G134200 chr1B 97.386 153 2 2 352 502 234818448 234818600 5.920000e-65 259.0
32 TraesCS2B01G134200 chr7B 99.291 141 1 0 352 492 52907091 52907231 7.660000e-64 255.0
33 TraesCS2B01G134200 chr7B 93.407 91 6 0 5468 5558 639796286 639796196 1.040000e-27 135.0
34 TraesCS2B01G134200 chr7A 96.774 155 2 3 352 504 404121676 404121523 7.660000e-64 255.0
35 TraesCS2B01G134200 chr7A 87.634 186 20 3 4831 5015 104530948 104530765 4.680000e-51 213.0
36 TraesCS2B01G134200 chr7A 86.667 75 6 4 3212 3284 32300595 32300523 4.950000e-11 80.5
37 TraesCS2B01G134200 chr3A 96.774 155 1 3 352 506 90137416 90137266 7.660000e-64 255.0
38 TraesCS2B01G134200 chr3A 90.000 100 8 2 5456 5555 99426282 99426185 1.740000e-25 128.0
39 TraesCS2B01G134200 chr1A 96.774 155 1 3 352 506 155847062 155846912 7.660000e-64 255.0
40 TraesCS2B01G134200 chr6B 96.512 86 3 0 5470 5555 705518148 705518233 6.220000e-30 143.0
41 TraesCS2B01G134200 chr7D 96.471 85 3 0 5471 5555 4511732 4511648 2.240000e-29 141.0
42 TraesCS2B01G134200 chr7D 89.333 75 4 4 3212 3284 31996313 31996241 2.290000e-14 91.6
43 TraesCS2B01G134200 chr6D 95.349 86 4 0 5470 5555 47081293 47081378 2.900000e-28 137.0
44 TraesCS2B01G134200 chrUn 88.000 75 5 4 3212 3284 366954127 366954055 1.060000e-12 86.1
45 TraesCS2B01G134200 chrUn 88.000 75 5 4 3212 3284 366956098 366956026 1.060000e-12 86.1
46 TraesCS2B01G134200 chrUn 88.000 75 5 4 3212 3284 444590120 444590192 1.060000e-12 86.1
47 TraesCS2B01G134200 chr4A 88.000 75 5 4 3212 3284 694667077 694667149 1.060000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G134200 chr2B 100333691 100339647 5956 True 11001.000000 11001 100.000000 1 5957 1 chr2B.!!$R1 5956
1 TraesCS2B01G134200 chr2A 65664471 65670612 6141 True 1280.142857 5960 92.675571 1 5957 7 chr2A.!!$R1 5956
2 TraesCS2B01G134200 chr2D 64182000 64187846 5846 True 1064.875000 3862 93.619125 1 5957 8 chr2D.!!$R2 5956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 465 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 F
477 478 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.0 38.40 4.00 F
588 589 0.397941 ATGGACCATATGAGGGCACG 59.602 55.000 4.75 0.0 38.98 5.34 F
2383 2399 1.403679 GGATGAGACCTCACGACTCAG 59.596 57.143 1.31 0.0 43.11 3.35 F
4107 4151 0.378257 CTGCAATGGGAACGAATCGG 59.622 55.000 7.80 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2028 0.808755 GTACCATGAACTTTGCGGGG 59.191 55.000 0.00 0.00 0.0 5.73 R
2473 2489 1.798813 GGCATAACCGAGGAAATAGCG 59.201 52.381 0.00 0.00 0.0 4.26 R
2542 2558 5.376625 TCAGGTATGCAGTTCAAAGAAGTT 58.623 37.500 0.00 0.00 0.0 2.66 R
4195 4239 0.036577 CTTGCTAGCAGGCTGTCACT 60.037 55.000 18.45 7.36 0.0 3.41 R
5674 5862 0.322816 GCAGGCCCAATCACTCAAGA 60.323 55.000 0.00 0.00 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 6.071616 TGAGAACCTTAATATTTTGCACCACC 60.072 38.462 0.00 0.00 0.00 4.61
200 201 0.177604 CAAGCAGAGGGCCTCTACTG 59.822 60.000 32.12 24.80 46.50 2.74
208 209 1.134037 AGGGCCTCTACTGTCTACTCG 60.134 57.143 0.00 0.00 0.00 4.18
228 229 3.952323 TCGGGAAGAGTATGTAAGAGTGG 59.048 47.826 0.00 0.00 0.00 4.00
232 233 4.442192 GGAAGAGTATGTAAGAGTGGCAGG 60.442 50.000 0.00 0.00 0.00 4.85
311 312 7.653767 AATCGTTAAACAGCCAGCTATATAC 57.346 36.000 0.00 0.00 0.00 1.47
312 313 6.151663 TCGTTAAACAGCCAGCTATATACA 57.848 37.500 0.00 0.00 0.00 2.29
355 356 6.065976 TGTGGAATGTCTACAAATGAGGAT 57.934 37.500 0.00 0.00 34.87 3.24
356 357 6.115446 TGTGGAATGTCTACAAATGAGGATC 58.885 40.000 0.00 0.00 34.87 3.36
359 360 5.762218 GGAATGTCTACAAATGAGGATCCAG 59.238 44.000 15.82 0.00 0.00 3.86
360 361 4.760530 TGTCTACAAATGAGGATCCAGG 57.239 45.455 15.82 0.00 0.00 4.45
361 362 3.455910 TGTCTACAAATGAGGATCCAGGG 59.544 47.826 15.82 0.00 0.00 4.45
362 363 3.711704 GTCTACAAATGAGGATCCAGGGA 59.288 47.826 15.82 0.00 0.00 4.20
363 364 4.164221 GTCTACAAATGAGGATCCAGGGAA 59.836 45.833 15.82 0.00 0.00 3.97
365 366 2.243221 ACAAATGAGGATCCAGGGAAGG 59.757 50.000 15.82 0.00 0.00 3.46
366 367 1.527457 AATGAGGATCCAGGGAAGGG 58.473 55.000 15.82 0.00 0.00 3.95
367 368 0.348370 ATGAGGATCCAGGGAAGGGT 59.652 55.000 15.82 0.00 0.00 4.34
368 369 0.326618 TGAGGATCCAGGGAAGGGTC 60.327 60.000 15.82 0.00 38.11 4.46
370 371 3.231298 GATCCAGGGAAGGGTCCG 58.769 66.667 0.00 0.00 46.04 4.79
371 372 1.382695 GATCCAGGGAAGGGTCCGA 60.383 63.158 0.00 0.00 46.04 4.55
372 373 1.687297 GATCCAGGGAAGGGTCCGAC 61.687 65.000 0.00 0.00 46.04 4.79
373 374 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
374 375 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
375 376 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
376 377 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
377 378 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
378 379 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
379 380 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
380 381 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
381 382 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
382 383 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
392 393 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
393 394 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
394 395 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
395 396 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
396 397 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
397 398 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
398 399 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
399 400 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
400 401 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
401 402 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
402 403 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
403 404 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
404 405 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
405 406 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
406 407 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
407 408 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
408 409 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
409 410 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
410 411 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
411 412 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
412 413 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
413 414 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
414 415 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
415 416 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
416 417 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
417 418 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
418 419 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
430 431 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
431 432 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
432 433 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
433 434 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
434 435 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
435 436 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
436 437 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
437 438 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
438 439 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
439 440 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
440 441 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
441 442 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
442 443 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
443 444 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
444 445 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
445 446 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
446 447 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
447 448 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
448 449 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
449 450 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
450 451 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
451 452 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
463 464 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
464 465 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
465 466 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
466 467 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
467 468 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
468 469 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
469 470 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
470 471 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
471 472 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
472 473 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
473 474 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
474 475 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
475 476 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
476 477 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
477 478 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
478 479 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
482 483 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
483 484 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
484 485 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
485 486 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
486 487 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
487 488 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
488 489 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
489 490 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
495 496 4.496336 GCGCCAAGGCTCCCTCAT 62.496 66.667 9.73 0.00 39.32 2.90
496 497 2.515523 CGCCAAGGCTCCCTCATG 60.516 66.667 9.73 0.00 39.32 3.07
497 498 2.123982 GCCAAGGCTCCCTCATGG 60.124 66.667 3.29 0.00 35.28 3.66
498 499 2.988839 GCCAAGGCTCCCTCATGGT 61.989 63.158 3.29 0.00 34.80 3.55
499 500 1.225704 CCAAGGCTCCCTCATGGTC 59.774 63.158 0.00 0.00 29.40 4.02
588 589 0.397941 ATGGACCATATGAGGGCACG 59.602 55.000 4.75 0.00 38.98 5.34
616 617 3.484407 GCACCATTGCTAGGATCTTCAT 58.516 45.455 0.00 0.00 46.17 2.57
750 752 6.205464 CACACATGTTCTTATCACTTTCTGGT 59.795 38.462 0.00 0.00 0.00 4.00
779 781 4.937201 ACTTGTTTCTAGCCTTTTTGGG 57.063 40.909 0.00 0.00 36.00 4.12
883 885 3.926527 TGTCACACATGTTCTAATCGCTC 59.073 43.478 0.00 0.00 0.00 5.03
885 887 4.032217 GTCACACATGTTCTAATCGCTCTG 59.968 45.833 0.00 0.00 0.00 3.35
973 982 9.781834 TTCTTAAAAGGTGCATAATGATAAACG 57.218 29.630 0.00 0.00 0.00 3.60
974 983 8.952278 TCTTAAAAGGTGCATAATGATAAACGT 58.048 29.630 0.00 0.00 0.00 3.99
988 997 5.301555 TGATAAACGTGTGGAGTTTCATGA 58.698 37.500 0.00 0.00 41.44 3.07
1297 1306 5.994668 CCAGAAGATATTACTTTGAGCCCTC 59.005 44.000 0.00 0.00 0.00 4.30
1318 1327 3.009143 TCCCCTCCTCTTCAAGTTAAAGC 59.991 47.826 0.00 0.00 0.00 3.51
1671 1680 4.808364 GGTTCTGTTGCTCTCATAAGCTAG 59.192 45.833 0.00 0.00 42.94 3.42
1672 1681 5.415221 GTTCTGTTGCTCTCATAAGCTAGT 58.585 41.667 0.00 0.00 42.94 2.57
1864 1874 2.682893 GCATGTACCAGGCTCGAAG 58.317 57.895 0.00 0.00 38.19 3.79
2017 2028 6.200854 CCTCACTTGGTTAAAAATTTGACAGC 59.799 38.462 0.00 0.00 0.00 4.40
2034 2045 2.275380 GCCCCGCAAAGTTCATGGT 61.275 57.895 0.00 0.00 0.00 3.55
2048 2060 5.133221 AGTTCATGGTACTGCTCTGTTTTT 58.867 37.500 0.00 0.00 0.00 1.94
2091 2103 5.009210 ACGTGTTTAGCCATGTTATGTGTTT 59.991 36.000 0.00 0.00 30.45 2.83
2097 2109 8.487176 GTTTAGCCATGTTATGTGTTTTTGAAG 58.513 33.333 0.00 0.00 0.00 3.02
2331 2347 4.157656 TGGTTCTGTGGTGAAAGAAACTTG 59.842 41.667 2.50 0.00 40.19 3.16
2383 2399 1.403679 GGATGAGACCTCACGACTCAG 59.596 57.143 1.31 0.00 43.11 3.35
2487 2503 3.753294 ATGATTCGCTATTTCCTCGGT 57.247 42.857 0.00 0.00 0.00 4.69
2623 2640 5.556006 TCTGTATGATGATCATGCCTTCA 57.444 39.130 17.74 5.60 38.48 3.02
2757 2774 3.625764 TGCCGATAATGAACAAGTAAGCC 59.374 43.478 0.00 0.00 0.00 4.35
2813 2830 5.507315 GCATATTAACTGTTAATTGCGGGCT 60.507 40.000 25.68 7.37 37.12 5.19
2873 2903 8.947115 GCTTGACTTAGTATGTTACCTGAATTT 58.053 33.333 0.00 0.00 0.00 1.82
2890 2921 7.158021 CCTGAATTTTGGCATAACCTTGTAAA 58.842 34.615 0.00 0.00 40.22 2.01
2891 2922 7.659390 CCTGAATTTTGGCATAACCTTGTAAAA 59.341 33.333 0.00 0.00 40.22 1.52
2892 2923 8.964476 TGAATTTTGGCATAACCTTGTAAAAA 57.036 26.923 0.00 0.00 40.22 1.94
2893 2924 8.831550 TGAATTTTGGCATAACCTTGTAAAAAC 58.168 29.630 0.00 0.00 40.22 2.43
2897 2928 7.778470 TTGGCATAACCTTGTAAAAACTTTG 57.222 32.000 0.00 0.00 40.22 2.77
2910 2943 8.918961 TGTAAAAACTTTGTGAACATAACTGG 57.081 30.769 0.00 0.00 0.00 4.00
2921 2954 4.716784 TGAACATAACTGGCTCACCTCTAT 59.283 41.667 0.00 0.00 36.63 1.98
2949 2982 8.997621 ATCTTGAATTAGTTTTAGTGCTCGTA 57.002 30.769 0.00 0.00 0.00 3.43
3033 3066 3.552604 TTACCTTGCGAGCAACAATTC 57.447 42.857 6.39 0.00 0.00 2.17
3166 3199 6.701145 TCAGTCCTCACTAGCTATTACAAG 57.299 41.667 0.00 0.00 0.00 3.16
3322 3355 1.073199 CCGTCTTGGGGCAGTCTTT 59.927 57.895 0.00 0.00 0.00 2.52
3640 3673 2.208872 AGGATTCCCTTGGTATGCACT 58.791 47.619 0.00 0.00 40.78 4.40
3724 3757 1.134788 GTGTCTTACACCATCCTCCCG 60.135 57.143 0.00 0.00 43.05 5.14
3899 3932 7.956315 AGTAGGCCTCCTGTAAATATCTAATCA 59.044 37.037 9.68 0.00 34.61 2.57
4090 4125 6.024552 TGGCTTAAAAATCCTTGTTAGCTG 57.975 37.500 0.00 0.00 0.00 4.24
4094 4129 6.591448 GCTTAAAAATCCTTGTTAGCTGCAAT 59.409 34.615 1.02 0.00 0.00 3.56
4095 4130 7.412237 GCTTAAAAATCCTTGTTAGCTGCAATG 60.412 37.037 1.02 0.00 0.00 2.82
4107 4151 0.378257 CTGCAATGGGAACGAATCGG 59.622 55.000 7.80 0.00 0.00 4.18
4131 4175 1.301677 CGGAAACTGGCAGCTCTTCC 61.302 60.000 23.74 23.74 33.60 3.46
4133 4177 1.916697 GAAACTGGCAGCTCTTCCGC 61.917 60.000 15.89 0.00 0.00 5.54
4141 4185 1.080025 AGCTCTTCCGCCGTTGTAC 60.080 57.895 0.00 0.00 0.00 2.90
4148 4192 0.604073 TCCGCCGTTGTACATCAGAA 59.396 50.000 0.00 0.00 0.00 3.02
4150 4194 1.801771 CCGCCGTTGTACATCAGAAAA 59.198 47.619 0.00 0.00 0.00 2.29
4155 4199 5.276395 CGCCGTTGTACATCAGAAAATAGAG 60.276 44.000 0.00 0.00 0.00 2.43
4158 4202 7.011482 GCCGTTGTACATCAGAAAATAGAGAAT 59.989 37.037 0.00 0.00 0.00 2.40
4180 4224 6.795144 ATTTCAAGTAAATGATGGATGCCA 57.205 33.333 0.00 0.00 36.41 4.92
4182 4226 4.209538 TCAAGTAAATGATGGATGCCAGG 58.790 43.478 0.00 0.00 36.75 4.45
4183 4227 4.079844 TCAAGTAAATGATGGATGCCAGGA 60.080 41.667 0.00 0.00 36.75 3.86
4184 4228 3.825328 AGTAAATGATGGATGCCAGGAC 58.175 45.455 0.00 0.00 36.75 3.85
4185 4229 1.683943 AAATGATGGATGCCAGGACG 58.316 50.000 0.00 0.00 36.75 4.79
4186 4230 0.839277 AATGATGGATGCCAGGACGA 59.161 50.000 0.00 0.00 36.75 4.20
4187 4231 1.062364 ATGATGGATGCCAGGACGAT 58.938 50.000 0.00 0.00 36.75 3.73
4188 4232 1.715785 TGATGGATGCCAGGACGATA 58.284 50.000 0.00 0.00 36.75 2.92
4189 4233 2.046292 TGATGGATGCCAGGACGATAA 58.954 47.619 0.00 0.00 36.75 1.75
4190 4234 2.437651 TGATGGATGCCAGGACGATAAA 59.562 45.455 0.00 0.00 36.75 1.40
4191 4235 3.072915 TGATGGATGCCAGGACGATAAAT 59.927 43.478 0.00 0.00 36.75 1.40
4192 4236 3.576078 TGGATGCCAGGACGATAAATT 57.424 42.857 0.00 0.00 0.00 1.82
4193 4237 3.897239 TGGATGCCAGGACGATAAATTT 58.103 40.909 0.00 0.00 0.00 1.82
4194 4238 4.277476 TGGATGCCAGGACGATAAATTTT 58.723 39.130 0.00 0.00 0.00 1.82
4195 4239 5.441500 TGGATGCCAGGACGATAAATTTTA 58.558 37.500 0.00 0.00 0.00 1.52
4196 4240 5.530915 TGGATGCCAGGACGATAAATTTTAG 59.469 40.000 0.00 0.00 0.00 1.85
4197 4241 5.531287 GGATGCCAGGACGATAAATTTTAGT 59.469 40.000 0.00 0.00 0.00 2.24
4198 4242 5.811399 TGCCAGGACGATAAATTTTAGTG 57.189 39.130 0.00 0.00 0.00 2.74
4199 4243 5.492895 TGCCAGGACGATAAATTTTAGTGA 58.507 37.500 0.00 0.00 0.00 3.41
4200 4244 5.353123 TGCCAGGACGATAAATTTTAGTGAC 59.647 40.000 0.00 0.00 0.00 3.67
4201 4245 5.353123 GCCAGGACGATAAATTTTAGTGACA 59.647 40.000 0.00 0.00 0.00 3.58
4202 4246 6.456988 GCCAGGACGATAAATTTTAGTGACAG 60.457 42.308 0.00 0.00 0.00 3.51
4203 4247 6.456988 CCAGGACGATAAATTTTAGTGACAGC 60.457 42.308 0.00 0.00 0.00 4.40
4204 4248 5.585047 AGGACGATAAATTTTAGTGACAGCC 59.415 40.000 0.00 0.00 0.00 4.85
4205 4249 5.585047 GGACGATAAATTTTAGTGACAGCCT 59.415 40.000 0.00 0.00 0.00 4.58
4206 4250 6.422776 ACGATAAATTTTAGTGACAGCCTG 57.577 37.500 0.00 0.00 0.00 4.85
4207 4251 5.163754 ACGATAAATTTTAGTGACAGCCTGC 60.164 40.000 0.00 0.00 0.00 4.85
4208 4252 5.065218 CGATAAATTTTAGTGACAGCCTGCT 59.935 40.000 0.00 0.00 0.00 4.24
4209 4253 6.257849 CGATAAATTTTAGTGACAGCCTGCTA 59.742 38.462 0.00 0.00 0.00 3.49
4210 4254 5.886960 AAATTTTAGTGACAGCCTGCTAG 57.113 39.130 0.00 0.00 0.00 3.42
4211 4255 2.386661 TTTAGTGACAGCCTGCTAGC 57.613 50.000 8.10 8.10 0.00 3.42
4212 4256 1.266178 TTAGTGACAGCCTGCTAGCA 58.734 50.000 18.22 18.22 34.23 3.49
4213 4257 1.266178 TAGTGACAGCCTGCTAGCAA 58.734 50.000 19.86 0.00 34.23 3.91
4214 4258 0.036577 AGTGACAGCCTGCTAGCAAG 60.037 55.000 19.86 14.38 34.23 4.01
4215 4259 1.023513 GTGACAGCCTGCTAGCAAGG 61.024 60.000 19.86 21.13 34.23 3.61
4216 4260 1.451028 GACAGCCTGCTAGCAAGGG 60.451 63.158 25.21 21.55 34.23 3.95
4217 4261 1.903877 GACAGCCTGCTAGCAAGGGA 61.904 60.000 23.52 0.00 34.23 4.20
4218 4262 1.277580 ACAGCCTGCTAGCAAGGGAT 61.278 55.000 23.52 16.32 34.23 3.85
4219 4263 0.761187 CAGCCTGCTAGCAAGGGATA 59.239 55.000 23.52 0.00 34.23 2.59
4220 4264 1.350351 CAGCCTGCTAGCAAGGGATAT 59.650 52.381 23.52 8.20 34.23 1.63
4221 4265 1.350351 AGCCTGCTAGCAAGGGATATG 59.650 52.381 23.52 8.09 34.23 1.78
4222 4266 1.349026 GCCTGCTAGCAAGGGATATGA 59.651 52.381 23.52 0.00 0.00 2.15
4223 4267 2.224621 GCCTGCTAGCAAGGGATATGAA 60.225 50.000 23.52 0.00 0.00 2.57
4224 4268 3.748668 GCCTGCTAGCAAGGGATATGAAA 60.749 47.826 23.52 0.00 0.00 2.69
4225 4269 4.660168 CCTGCTAGCAAGGGATATGAAAT 58.340 43.478 19.86 0.00 0.00 2.17
4226 4270 5.804446 GCCTGCTAGCAAGGGATATGAAATA 60.804 44.000 23.52 0.00 0.00 1.40
4227 4271 6.240894 CCTGCTAGCAAGGGATATGAAATAA 58.759 40.000 19.86 0.00 29.06 1.40
4228 4272 6.373774 CCTGCTAGCAAGGGATATGAAATAAG 59.626 42.308 19.86 0.20 29.06 1.73
4229 4273 7.078249 TGCTAGCAAGGGATATGAAATAAGA 57.922 36.000 16.84 0.00 29.06 2.10
4230 4274 6.936900 TGCTAGCAAGGGATATGAAATAAGAC 59.063 38.462 16.84 0.00 29.06 3.01
4231 4275 7.164803 GCTAGCAAGGGATATGAAATAAGACT 58.835 38.462 10.63 0.00 29.06 3.24
4232 4276 7.333174 GCTAGCAAGGGATATGAAATAAGACTC 59.667 40.741 10.63 0.00 29.06 3.36
4233 4277 6.538263 AGCAAGGGATATGAAATAAGACTCC 58.462 40.000 0.00 0.00 29.06 3.85
4234 4278 6.101734 AGCAAGGGATATGAAATAAGACTCCA 59.898 38.462 0.00 0.00 28.02 3.86
4235 4279 6.429385 GCAAGGGATATGAAATAAGACTCCAG 59.571 42.308 0.00 0.00 28.02 3.86
4236 4280 6.694445 AGGGATATGAAATAAGACTCCAGG 57.306 41.667 0.00 0.00 28.02 4.45
4246 4290 8.265055 TGAAATAAGACTCCAGGACGATAAATT 58.735 33.333 0.00 0.00 0.00 1.82
4257 4301 4.270325 AGGACGATAAATTTTAGCGACAGC 59.730 41.667 27.65 15.43 45.58 4.40
4279 4323 4.660168 CCTGCTAGCAAGGGATATGAAAT 58.340 43.478 19.86 0.00 0.00 2.17
4280 4324 5.804446 GCCTGCTAGCAAGGGATATGAAATA 60.804 44.000 23.52 0.00 0.00 1.40
4281 4325 6.240894 CCTGCTAGCAAGGGATATGAAATAA 58.759 40.000 19.86 0.00 29.06 1.40
4282 4326 6.373774 CCTGCTAGCAAGGGATATGAAATAAG 59.626 42.308 19.86 0.20 29.06 1.73
4283 4327 7.078249 TGCTAGCAAGGGATATGAAATAAGA 57.922 36.000 16.84 0.00 29.06 2.10
4284 4328 6.936900 TGCTAGCAAGGGATATGAAATAAGAC 59.063 38.462 16.84 0.00 29.06 3.01
4285 4329 7.164803 GCTAGCAAGGGATATGAAATAAGACT 58.835 38.462 10.63 0.00 29.06 3.24
4286 4330 7.333174 GCTAGCAAGGGATATGAAATAAGACTC 59.667 40.741 10.63 0.00 29.06 3.36
4287 4331 6.538263 AGCAAGGGATATGAAATAAGACTCC 58.462 40.000 0.00 0.00 29.06 3.85
4288 4332 6.101734 AGCAAGGGATATGAAATAAGACTCCA 59.898 38.462 0.00 0.00 28.02 3.86
4289 4333 6.429385 GCAAGGGATATGAAATAAGACTCCAG 59.571 42.308 0.00 0.00 28.02 3.86
4290 4334 6.694445 AGGGATATGAAATAAGACTCCAGG 57.306 41.667 0.00 0.00 28.02 4.45
4291 4335 6.393897 AGGGATATGAAATAAGACTCCAGGA 58.606 40.000 0.00 0.00 28.02 3.86
4292 4336 6.271159 AGGGATATGAAATAAGACTCCAGGAC 59.729 42.308 0.00 0.00 28.02 3.85
4293 4337 6.159988 GGATATGAAATAAGACTCCAGGACG 58.840 44.000 0.00 0.00 29.06 4.79
4294 4338 6.015350 GGATATGAAATAAGACTCCAGGACGA 60.015 42.308 0.00 0.00 29.06 4.20
4295 4339 5.878406 ATGAAATAAGACTCCAGGACGAT 57.122 39.130 0.00 0.00 0.00 3.73
4296 4340 6.978674 ATGAAATAAGACTCCAGGACGATA 57.021 37.500 0.00 0.00 0.00 2.92
4297 4341 6.785337 TGAAATAAGACTCCAGGACGATAA 57.215 37.500 0.00 0.00 0.00 1.75
4298 4342 7.177832 TGAAATAAGACTCCAGGACGATAAA 57.822 36.000 0.00 0.00 0.00 1.40
4299 4343 7.792032 TGAAATAAGACTCCAGGACGATAAAT 58.208 34.615 0.00 0.00 0.00 1.40
4300 4344 8.265055 TGAAATAAGACTCCAGGACGATAAATT 58.735 33.333 0.00 0.00 0.00 1.82
4301 4345 9.110502 GAAATAAGACTCCAGGACGATAAATTT 57.889 33.333 0.00 0.00 0.00 1.82
4302 4346 9.462606 AAATAAGACTCCAGGACGATAAATTTT 57.537 29.630 0.00 0.00 0.00 1.82
4304 4348 9.765795 ATAAGACTCCAGGACGATAAATTTTAG 57.234 33.333 0.00 0.00 0.00 1.85
4305 4349 6.049790 AGACTCCAGGACGATAAATTTTAGC 58.950 40.000 0.00 0.00 0.00 3.09
4306 4350 4.809426 ACTCCAGGACGATAAATTTTAGCG 59.191 41.667 21.42 21.42 0.00 4.26
4307 4351 5.013568 TCCAGGACGATAAATTTTAGCGA 57.986 39.130 27.65 6.66 0.00 4.93
4308 4352 4.807304 TCCAGGACGATAAATTTTAGCGAC 59.193 41.667 27.65 22.08 0.00 5.19
4309 4353 4.569162 CCAGGACGATAAATTTTAGCGACA 59.431 41.667 27.65 0.00 0.00 4.35
4310 4354 5.276868 CCAGGACGATAAATTTTAGCGACAG 60.277 44.000 27.65 18.30 0.00 3.51
4311 4355 4.270325 AGGACGATAAATTTTAGCGACAGC 59.730 41.667 27.65 15.43 45.58 4.40
4312 4356 4.515432 GACGATAAATTTTAGCGACAGCC 58.485 43.478 27.65 11.05 46.67 4.85
4313 4357 4.189231 ACGATAAATTTTAGCGACAGCCT 58.811 39.130 27.65 6.66 46.67 4.58
4314 4358 4.034048 ACGATAAATTTTAGCGACAGCCTG 59.966 41.667 27.65 0.00 46.67 4.85
4315 4359 2.636768 AAATTTTAGCGACAGCCTGC 57.363 45.000 0.00 0.00 46.67 4.85
4316 4360 1.826385 AATTTTAGCGACAGCCTGCT 58.174 45.000 0.00 0.00 46.67 4.24
4317 4361 2.691409 ATTTTAGCGACAGCCTGCTA 57.309 45.000 0.00 0.00 46.67 3.49
4318 4362 2.010145 TTTTAGCGACAGCCTGCTAG 57.990 50.000 0.00 0.00 43.91 3.42
4319 4363 0.460284 TTTAGCGACAGCCTGCTAGC 60.460 55.000 8.10 8.10 43.91 3.42
4320 4364 1.604147 TTAGCGACAGCCTGCTAGCA 61.604 55.000 18.22 18.22 43.91 3.49
4321 4365 1.604147 TAGCGACAGCCTGCTAGCAA 61.604 55.000 19.86 2.68 46.67 3.91
4322 4366 2.459442 GCGACAGCCTGCTAGCAAG 61.459 63.158 19.86 14.38 37.42 4.01
4323 4367 1.812922 CGACAGCCTGCTAGCAAGG 60.813 63.158 19.86 21.13 34.23 3.61
4324 4368 1.451028 GACAGCCTGCTAGCAAGGG 60.451 63.158 25.21 21.55 34.23 3.95
4325 4369 1.903877 GACAGCCTGCTAGCAAGGGA 61.904 60.000 23.52 0.00 34.23 4.20
4326 4370 1.277580 ACAGCCTGCTAGCAAGGGAT 61.278 55.000 23.52 16.32 34.23 3.85
4327 4371 0.761187 CAGCCTGCTAGCAAGGGATA 59.239 55.000 23.52 0.00 34.23 2.59
4328 4372 1.350351 CAGCCTGCTAGCAAGGGATAT 59.650 52.381 23.52 8.20 34.23 1.63
4329 4373 1.350351 AGCCTGCTAGCAAGGGATATG 59.650 52.381 23.52 8.09 34.23 1.78
4330 4374 1.349026 GCCTGCTAGCAAGGGATATGA 59.651 52.381 23.52 0.00 0.00 2.15
4331 4375 2.224621 GCCTGCTAGCAAGGGATATGAA 60.225 50.000 23.52 0.00 0.00 2.57
4332 4376 3.748668 GCCTGCTAGCAAGGGATATGAAA 60.749 47.826 23.52 0.00 0.00 2.69
4333 4377 4.660168 CCTGCTAGCAAGGGATATGAAAT 58.340 43.478 19.86 0.00 0.00 2.17
4334 4378 5.804446 GCCTGCTAGCAAGGGATATGAAATA 60.804 44.000 23.52 0.00 0.00 1.40
4342 4387 7.155328 AGCAAGGGATATGAAATAAGACTACG 58.845 38.462 0.00 0.00 29.06 3.51
4349 4394 9.178427 GGATATGAAATAAGACTACGTGTACAC 57.822 37.037 16.32 16.32 29.06 2.90
4352 4397 7.806149 TGAAATAAGACTACGTGTACACATG 57.194 36.000 24.98 15.67 38.76 3.21
4372 4417 3.722147 TGTGTCAAGAGCTCTGAAGTTC 58.278 45.455 19.06 7.49 33.22 3.01
4375 4420 4.447389 GTGTCAAGAGCTCTGAAGTTCTTC 59.553 45.833 19.06 5.70 46.49 2.87
4376 4421 4.343526 TGTCAAGAGCTCTGAAGTTCTTCT 59.656 41.667 19.06 0.00 46.49 2.85
4377 4422 5.536538 TGTCAAGAGCTCTGAAGTTCTTCTA 59.463 40.000 19.06 2.26 46.49 2.10
4378 4423 6.210385 TGTCAAGAGCTCTGAAGTTCTTCTAT 59.790 38.462 19.06 0.00 46.49 1.98
4379 4424 7.096551 GTCAAGAGCTCTGAAGTTCTTCTATT 58.903 38.462 19.06 0.00 46.49 1.73
4710 4755 2.125229 AGCTGCTGCATCTCCGTG 60.125 61.111 18.42 0.00 42.74 4.94
4783 4828 4.971125 GCCCGCTGGAGATACGGC 62.971 72.222 0.00 0.00 45.58 5.68
4914 4959 1.071385 CTGCTCAACTCCAAGGTCACT 59.929 52.381 0.00 0.00 0.00 3.41
4932 4977 0.327591 CTGCTTCCTTCTTCAGCCCT 59.672 55.000 0.00 0.00 32.11 5.19
5017 5066 5.073311 TGATCGGTACTGAAAAGGAAGAG 57.927 43.478 8.82 0.00 0.00 2.85
5021 5070 3.372206 CGGTACTGAAAAGGAAGAGCATG 59.628 47.826 0.00 0.00 0.00 4.06
5071 5122 6.097554 TCTGAAGTTCCCAAGTTAAATTTGCA 59.902 34.615 0.00 0.00 0.00 4.08
5075 5126 3.988819 TCCCAAGTTAAATTTGCACTGC 58.011 40.909 0.00 0.00 0.00 4.40
5095 5186 6.305877 CACTGCGTAGTAACTTCTAACTGAAG 59.694 42.308 5.64 4.13 45.21 3.02
5096 5187 6.206243 ACTGCGTAGTAACTTCTAACTGAAGA 59.794 38.462 3.62 0.00 43.90 2.87
5097 5188 7.573469 ACTGCGTAGTAACTTCTAACTGAAGAG 60.573 40.741 3.62 0.00 43.90 2.85
5136 5229 5.164620 TGGAACAGTCTGATCTATTGCAA 57.835 39.130 6.91 0.00 0.00 4.08
5217 5310 0.475906 AGTTGAAGCAGCTCCCTTGT 59.524 50.000 0.00 0.00 0.00 3.16
5218 5311 1.133668 AGTTGAAGCAGCTCCCTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
5219 5312 2.106511 AGTTGAAGCAGCTCCCTTGTTA 59.893 45.455 0.00 0.00 0.00 2.41
5294 5392 2.455674 ATCTGAACTTGCTGCGTGTA 57.544 45.000 0.00 0.00 0.00 2.90
5367 5467 1.224592 CCGCTGCTTGGATAACCCT 59.775 57.895 0.00 0.00 35.38 4.34
5370 5470 2.301870 CCGCTGCTTGGATAACCCTATA 59.698 50.000 0.00 0.00 35.38 1.31
5397 5497 2.600470 TTCTGCTGCTTGGGTTTTTG 57.400 45.000 0.00 0.00 0.00 2.44
5399 5499 2.318908 TCTGCTGCTTGGGTTTTTGAT 58.681 42.857 0.00 0.00 0.00 2.57
5415 5515 6.923508 GGTTTTTGATTTTGGAGAACTACCAG 59.076 38.462 0.00 0.00 38.70 4.00
5420 5520 7.786046 TGATTTTGGAGAACTACCAGTACTA 57.214 36.000 0.00 0.00 38.70 1.82
5439 5539 8.269424 CAGTACTAATTATAGCGCTTTCTTGTG 58.731 37.037 18.68 4.55 31.96 3.33
5484 5629 6.574465 GCAGAATGAAGTACTCCCTCTGTAAA 60.574 42.308 18.15 0.00 39.69 2.01
5486 5631 6.497259 AGAATGAAGTACTCCCTCTGTAAACA 59.503 38.462 0.00 0.00 0.00 2.83
5518 5663 9.017669 ACGAGCGTTTAGATTACTAAAATAGTG 57.982 33.333 0.00 0.00 45.97 2.74
5555 5700 9.597681 TCTTATATTTCTTTACGGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
5636 5781 9.574458 CCGAACTGAATGGTGATACTATTATAG 57.426 37.037 0.00 0.00 29.04 1.31
5876 6100 4.261909 GCCCTTCATCATTCCATGTCAATC 60.262 45.833 0.00 0.00 0.00 2.67
5879 6103 6.097839 CCCTTCATCATTCCATGTCAATCTTT 59.902 38.462 0.00 0.00 0.00 2.52
5880 6104 7.201145 CCTTCATCATTCCATGTCAATCTTTC 58.799 38.462 0.00 0.00 0.00 2.62
5935 6547 4.268939 GCTTTGCACTGCACGGCA 62.269 61.111 17.54 3.51 38.71 5.69
5942 6554 0.318955 GCACTGCACGGCATCTTTTT 60.319 50.000 0.00 0.00 38.13 1.94
5946 6558 0.597568 TGCACGGCATCTTTTTCCTG 59.402 50.000 0.00 0.00 31.71 3.86
5948 6560 1.533625 CACGGCATCTTTTTCCTGGA 58.466 50.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.962807 CCTTTTCAGGTGCACATGGAA 59.037 47.619 29.24 25.23 35.06 3.53
101 102 5.351465 GGTTCTCATAATCGTGAGCAGAAAA 59.649 40.000 0.00 0.00 44.15 2.29
143 144 5.431765 ACTTGTTACCAGATCTATGCAAGG 58.568 41.667 19.41 9.96 37.12 3.61
192 193 3.118334 TCTTCCCGAGTAGACAGTAGAGG 60.118 52.174 0.00 0.00 0.00 3.69
208 209 3.451178 TGCCACTCTTACATACTCTTCCC 59.549 47.826 0.00 0.00 0.00 3.97
228 229 0.326264 ACTGGATTGACTGACCCTGC 59.674 55.000 0.00 0.00 0.00 4.85
232 233 2.234908 AGTAGCACTGGATTGACTGACC 59.765 50.000 0.00 0.00 0.00 4.02
282 283 4.083484 AGCTGGCTGTTTAACGATTAACAC 60.083 41.667 0.00 0.00 0.00 3.32
311 312 6.032094 CACATAAATGCAAAGCTCTAACCTG 58.968 40.000 0.00 0.00 0.00 4.00
312 313 5.126061 CCACATAAATGCAAAGCTCTAACCT 59.874 40.000 0.00 0.00 0.00 3.50
355 356 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
356 357 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
359 360 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
360 361 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
361 362 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
362 363 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
363 364 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
365 366 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
366 367 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
371 372 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
372 373 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
373 374 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
374 375 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
375 376 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
376 377 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
377 378 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
378 379 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
379 380 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
380 381 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
381 382 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
382 383 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
383 384 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
384 385 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
385 386 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
386 387 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
387 388 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
388 389 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
389 390 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
390 391 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
391 392 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
392 393 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
393 394 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
394 395 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
395 396 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
396 397 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
397 398 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
398 399 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
399 400 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
400 401 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
401 402 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
402 403 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
403 404 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
404 405 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
405 406 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
406 407 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
407 408 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
408 409 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
422 423 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
423 424 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
424 425 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
425 426 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
426 427 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
427 428 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
428 429 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
429 430 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
430 431 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
431 432 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
446 447 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
447 448 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
448 449 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
449 450 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
450 451 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
451 452 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
452 453 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
453 454 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
454 455 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
455 456 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
456 457 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
457 458 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
458 459 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
459 460 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
460 461 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
465 466 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
466 467 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
467 468 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
468 469 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
469 470 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
470 471 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
471 472 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
478 479 4.496336 ATGAGGGAGCCTTGGCGC 62.496 66.667 6.84 6.84 31.76 6.53
479 480 2.515523 CATGAGGGAGCCTTGGCG 60.516 66.667 5.95 0.00 31.76 5.69
480 481 2.123982 CCATGAGGGAGCCTTGGC 60.124 66.667 2.97 2.97 40.01 4.52
481 482 1.225704 GACCATGAGGGAGCCTTGG 59.774 63.158 0.00 0.00 37.50 3.61
482 483 0.393537 GTGACCATGAGGGAGCCTTG 60.394 60.000 0.00 0.00 41.15 3.61
483 484 0.842030 TGTGACCATGAGGGAGCCTT 60.842 55.000 0.00 0.00 41.15 4.35
484 485 0.842030 TTGTGACCATGAGGGAGCCT 60.842 55.000 0.00 0.00 41.15 4.58
485 486 0.678048 GTTGTGACCATGAGGGAGCC 60.678 60.000 0.00 0.00 41.15 4.70
486 487 0.326264 AGTTGTGACCATGAGGGAGC 59.674 55.000 0.00 0.00 41.15 4.70
487 488 1.625315 TGAGTTGTGACCATGAGGGAG 59.375 52.381 0.00 0.00 41.15 4.30
488 489 1.347707 GTGAGTTGTGACCATGAGGGA 59.652 52.381 0.00 0.00 41.15 4.20
489 490 1.611673 GGTGAGTTGTGACCATGAGGG 60.612 57.143 0.00 0.00 44.81 4.30
490 491 1.349026 AGGTGAGTTGTGACCATGAGG 59.651 52.381 0.00 0.00 42.21 3.86
491 492 2.847327 AGGTGAGTTGTGACCATGAG 57.153 50.000 0.00 0.00 34.36 2.90
492 493 4.775253 TGTATAGGTGAGTTGTGACCATGA 59.225 41.667 0.00 0.00 34.36 3.07
493 494 5.084818 TGTATAGGTGAGTTGTGACCATG 57.915 43.478 0.00 0.00 34.36 3.66
494 495 5.755409 TTGTATAGGTGAGTTGTGACCAT 57.245 39.130 0.00 0.00 34.36 3.55
495 496 5.755409 ATTGTATAGGTGAGTTGTGACCA 57.245 39.130 0.00 0.00 34.36 4.02
496 497 8.038944 TCTTAATTGTATAGGTGAGTTGTGACC 58.961 37.037 0.00 0.00 0.00 4.02
497 498 8.997621 TCTTAATTGTATAGGTGAGTTGTGAC 57.002 34.615 0.00 0.00 0.00 3.67
737 739 8.375506 ACAAGTTGAAGATACCAGAAAGTGATA 58.624 33.333 10.54 0.00 0.00 2.15
741 743 7.775561 AGAAACAAGTTGAAGATACCAGAAAGT 59.224 33.333 10.54 0.00 0.00 2.66
750 752 8.691661 AAAAGGCTAGAAACAAGTTGAAGATA 57.308 30.769 10.54 0.00 0.00 1.98
883 885 6.108687 TGTCAGCCTTGAAATACATCTACAG 58.891 40.000 0.00 0.00 34.49 2.74
885 887 8.839310 ATATGTCAGCCTTGAAATACATCTAC 57.161 34.615 0.00 0.00 36.56 2.59
967 969 5.049680 GTGTCATGAAACTCCACACGTTTAT 60.050 40.000 8.90 0.00 34.94 1.40
973 982 3.876914 TCTTGTGTCATGAAACTCCACAC 59.123 43.478 16.96 10.56 35.90 3.82
974 983 3.876914 GTCTTGTGTCATGAAACTCCACA 59.123 43.478 16.96 13.75 34.47 4.17
988 997 6.068010 TCCATTACCTCATTTTGTCTTGTGT 58.932 36.000 0.00 0.00 0.00 3.72
1297 1306 3.348119 GCTTTAACTTGAAGAGGAGGGG 58.652 50.000 0.00 0.00 0.00 4.79
1318 1327 4.465305 AGCAAAAGAAGGATCAGAAATGGG 59.535 41.667 0.00 0.00 0.00 4.00
1864 1874 2.030805 CCAAGTTAGCTCAGTTTGGCAC 60.031 50.000 0.00 0.00 32.72 5.01
2017 2028 0.808755 GTACCATGAACTTTGCGGGG 59.191 55.000 0.00 0.00 0.00 5.73
2048 2060 7.985634 ACACGTCGTCTTAGTTAACTTTTTA 57.014 32.000 14.49 0.00 0.00 1.52
2065 2077 3.369756 ACATAACATGGCTAAACACGTCG 59.630 43.478 0.00 0.00 33.60 5.12
2091 2103 8.780846 TGTATATTTTTAGAGACGGCTTCAAA 57.219 30.769 0.00 0.00 0.00 2.69
2097 2109 8.837389 AGGATTTTGTATATTTTTAGAGACGGC 58.163 33.333 0.00 0.00 0.00 5.68
2410 2426 7.984050 TCCAGAGAGAATAATTCAAACTAGCTG 59.016 37.037 0.00 0.00 0.00 4.24
2473 2489 1.798813 GGCATAACCGAGGAAATAGCG 59.201 52.381 0.00 0.00 0.00 4.26
2487 2503 5.514169 TCAGGGTAAATGACAATGGCATAA 58.486 37.500 0.24 0.00 0.00 1.90
2542 2558 5.376625 TCAGGTATGCAGTTCAAAGAAGTT 58.623 37.500 0.00 0.00 0.00 2.66
2610 2627 9.893634 AATGATTAAAAATTGAAGGCATGATCA 57.106 25.926 0.00 0.00 0.00 2.92
2639 2656 6.201806 CCGAGAAGTTCCAGAGCTATAAATTG 59.798 42.308 0.00 0.00 0.00 2.32
2652 2669 1.827399 GCTCACCCCGAGAAGTTCCA 61.827 60.000 0.00 0.00 45.45 3.53
2757 2774 5.147162 GCAAACGTTGGATAAGAAACAGAG 58.853 41.667 6.92 0.00 0.00 3.35
2813 2830 8.871862 CACAAGAATTTCAGAAATGACAAAACA 58.128 29.630 9.24 0.00 0.00 2.83
2873 2903 7.278868 CACAAAGTTTTTACAAGGTTATGCCAA 59.721 33.333 0.00 0.00 40.61 4.52
2890 2921 5.359576 TGAGCCAGTTATGTTCACAAAGTTT 59.640 36.000 0.00 0.00 0.00 2.66
2891 2922 4.887071 TGAGCCAGTTATGTTCACAAAGTT 59.113 37.500 0.00 0.00 0.00 2.66
2892 2923 4.275936 GTGAGCCAGTTATGTTCACAAAGT 59.724 41.667 0.00 0.00 38.25 2.66
2893 2924 4.320494 GGTGAGCCAGTTATGTTCACAAAG 60.320 45.833 9.00 0.00 39.25 2.77
2897 2928 3.003480 GAGGTGAGCCAGTTATGTTCAC 58.997 50.000 0.00 0.00 37.92 3.18
2941 2974 0.108138 ACAGCCAGGAATACGAGCAC 60.108 55.000 0.00 0.00 0.00 4.40
2949 2982 4.785346 ACAGATGAATACAGCCAGGAAT 57.215 40.909 0.00 0.00 32.31 3.01
3033 3066 1.093159 GCAGATTGAGCCAAGGAGTG 58.907 55.000 0.00 0.00 0.00 3.51
3166 3199 1.376553 GTGCAGGAAGTGAGGGCTC 60.377 63.158 0.00 0.00 0.00 4.70
3322 3355 4.735132 CGAAGGAACGCCGAGGCA 62.735 66.667 15.03 0.00 42.06 4.75
3640 3673 0.179076 TCTCCGACGAGGCGTACATA 60.179 55.000 0.00 0.00 41.37 2.29
3724 3757 4.072131 TGAACTCAAAGTAGGCCATGTTC 58.928 43.478 5.01 7.73 34.82 3.18
4069 4104 5.469479 TGCAGCTAACAAGGATTTTTAAGC 58.531 37.500 0.00 0.00 0.00 3.09
4090 4125 1.091537 TTCCGATTCGTTCCCATTGC 58.908 50.000 5.20 0.00 0.00 3.56
4107 4151 1.131315 GAGCTGCCAGTTTCCGAATTC 59.869 52.381 0.00 0.00 0.00 2.17
4131 4175 3.740044 ATTTTCTGATGTACAACGGCG 57.260 42.857 4.80 4.80 0.00 6.46
4133 4177 7.827819 TTCTCTATTTTCTGATGTACAACGG 57.172 36.000 0.00 1.88 0.00 4.44
4155 4199 7.267128 TGGCATCCATCATTTACTTGAAATTC 58.733 34.615 0.00 0.00 35.45 2.17
4158 4202 5.127519 CCTGGCATCCATCATTTACTTGAAA 59.872 40.000 0.00 0.00 30.82 2.69
4163 4207 3.745480 CGTCCTGGCATCCATCATTTACT 60.745 47.826 0.00 0.00 30.82 2.24
4164 4208 2.549754 CGTCCTGGCATCCATCATTTAC 59.450 50.000 0.00 0.00 30.82 2.01
4180 4224 5.585047 GGCTGTCACTAAAATTTATCGTCCT 59.415 40.000 0.00 0.00 0.00 3.85
4182 4226 6.478588 CAGGCTGTCACTAAAATTTATCGTC 58.521 40.000 6.28 0.00 0.00 4.20
4183 4227 5.163754 GCAGGCTGTCACTAAAATTTATCGT 60.164 40.000 17.16 0.00 0.00 3.73
4184 4228 5.065218 AGCAGGCTGTCACTAAAATTTATCG 59.935 40.000 17.16 0.00 0.00 2.92
4185 4229 6.442513 AGCAGGCTGTCACTAAAATTTATC 57.557 37.500 17.16 0.00 0.00 1.75
4186 4230 6.038714 GCTAGCAGGCTGTCACTAAAATTTAT 59.961 38.462 17.16 0.00 0.00 1.40
4187 4231 5.354234 GCTAGCAGGCTGTCACTAAAATTTA 59.646 40.000 17.16 0.00 0.00 1.40
4188 4232 4.156739 GCTAGCAGGCTGTCACTAAAATTT 59.843 41.667 17.16 0.00 0.00 1.82
4189 4233 3.691609 GCTAGCAGGCTGTCACTAAAATT 59.308 43.478 17.16 0.00 0.00 1.82
4190 4234 3.274288 GCTAGCAGGCTGTCACTAAAAT 58.726 45.455 17.16 0.00 0.00 1.82
4191 4235 2.038426 TGCTAGCAGGCTGTCACTAAAA 59.962 45.455 14.93 0.00 0.00 1.52
4192 4236 1.623311 TGCTAGCAGGCTGTCACTAAA 59.377 47.619 14.93 0.00 0.00 1.85
4193 4237 1.266178 TGCTAGCAGGCTGTCACTAA 58.734 50.000 14.93 0.00 0.00 2.24
4194 4238 1.205655 CTTGCTAGCAGGCTGTCACTA 59.794 52.381 18.45 8.16 0.00 2.74
4195 4239 0.036577 CTTGCTAGCAGGCTGTCACT 60.037 55.000 18.45 7.36 0.00 3.41
4196 4240 1.023513 CCTTGCTAGCAGGCTGTCAC 61.024 60.000 20.78 4.27 0.00 3.67
4197 4241 1.297689 CCTTGCTAGCAGGCTGTCA 59.702 57.895 20.78 1.95 0.00 3.58
4198 4242 1.451028 CCCTTGCTAGCAGGCTGTC 60.451 63.158 20.78 8.57 0.00 3.51
4199 4243 1.277580 ATCCCTTGCTAGCAGGCTGT 61.278 55.000 20.78 5.87 0.00 4.40
4200 4244 0.761187 TATCCCTTGCTAGCAGGCTG 59.239 55.000 20.78 10.94 0.00 4.85
4201 4245 1.350351 CATATCCCTTGCTAGCAGGCT 59.650 52.381 20.78 12.31 0.00 4.58
4202 4246 1.349026 TCATATCCCTTGCTAGCAGGC 59.651 52.381 20.78 0.00 0.00 4.85
4203 4247 3.777106 TTCATATCCCTTGCTAGCAGG 57.223 47.619 19.39 19.39 0.00 4.85
4204 4248 7.118971 GTCTTATTTCATATCCCTTGCTAGCAG 59.881 40.741 18.45 11.87 0.00 4.24
4205 4249 6.936900 GTCTTATTTCATATCCCTTGCTAGCA 59.063 38.462 14.93 14.93 0.00 3.49
4206 4250 7.164803 AGTCTTATTTCATATCCCTTGCTAGC 58.835 38.462 8.10 8.10 0.00 3.42
4207 4251 7.821846 GGAGTCTTATTTCATATCCCTTGCTAG 59.178 40.741 0.00 0.00 0.00 3.42
4208 4252 7.292356 TGGAGTCTTATTTCATATCCCTTGCTA 59.708 37.037 0.00 0.00 0.00 3.49
4209 4253 6.101734 TGGAGTCTTATTTCATATCCCTTGCT 59.898 38.462 0.00 0.00 0.00 3.91
4210 4254 6.299141 TGGAGTCTTATTTCATATCCCTTGC 58.701 40.000 0.00 0.00 0.00 4.01
4211 4255 6.939163 CCTGGAGTCTTATTTCATATCCCTTG 59.061 42.308 0.00 0.00 0.00 3.61
4212 4256 6.851836 TCCTGGAGTCTTATTTCATATCCCTT 59.148 38.462 0.00 0.00 0.00 3.95
4213 4257 6.271159 GTCCTGGAGTCTTATTTCATATCCCT 59.729 42.308 0.00 0.00 0.00 4.20
4214 4258 6.468543 GTCCTGGAGTCTTATTTCATATCCC 58.531 44.000 0.00 0.00 0.00 3.85
4215 4259 6.015350 TCGTCCTGGAGTCTTATTTCATATCC 60.015 42.308 0.00 0.00 0.00 2.59
4216 4260 6.982852 TCGTCCTGGAGTCTTATTTCATATC 58.017 40.000 0.00 0.00 0.00 1.63
4217 4261 6.978674 TCGTCCTGGAGTCTTATTTCATAT 57.021 37.500 0.00 0.00 0.00 1.78
4218 4262 6.978674 ATCGTCCTGGAGTCTTATTTCATA 57.021 37.500 0.00 0.00 0.00 2.15
4219 4263 5.878406 ATCGTCCTGGAGTCTTATTTCAT 57.122 39.130 0.00 0.00 0.00 2.57
4220 4264 6.785337 TTATCGTCCTGGAGTCTTATTTCA 57.215 37.500 0.00 0.00 0.00 2.69
4221 4265 8.664211 AATTTATCGTCCTGGAGTCTTATTTC 57.336 34.615 0.00 0.00 0.00 2.17
4222 4266 9.462606 AAAATTTATCGTCCTGGAGTCTTATTT 57.537 29.630 0.00 0.00 0.00 1.40
4224 4268 9.765795 CTAAAATTTATCGTCCTGGAGTCTTAT 57.234 33.333 0.00 0.00 0.00 1.73
4225 4269 7.709613 GCTAAAATTTATCGTCCTGGAGTCTTA 59.290 37.037 0.00 0.00 0.00 2.10
4226 4270 6.539103 GCTAAAATTTATCGTCCTGGAGTCTT 59.461 38.462 0.00 0.00 0.00 3.01
4227 4271 6.049790 GCTAAAATTTATCGTCCTGGAGTCT 58.950 40.000 0.00 0.00 0.00 3.24
4228 4272 5.050972 CGCTAAAATTTATCGTCCTGGAGTC 60.051 44.000 0.00 0.00 0.00 3.36
4229 4273 4.809426 CGCTAAAATTTATCGTCCTGGAGT 59.191 41.667 0.00 0.00 0.00 3.85
4230 4274 5.047847 TCGCTAAAATTTATCGTCCTGGAG 58.952 41.667 8.52 0.00 0.00 3.86
4231 4275 4.807304 GTCGCTAAAATTTATCGTCCTGGA 59.193 41.667 8.52 0.00 0.00 3.86
4232 4276 4.569162 TGTCGCTAAAATTTATCGTCCTGG 59.431 41.667 8.52 0.00 0.00 4.45
4233 4277 5.712217 TGTCGCTAAAATTTATCGTCCTG 57.288 39.130 8.52 0.00 0.00 3.86
4234 4278 4.270325 GCTGTCGCTAAAATTTATCGTCCT 59.730 41.667 8.52 0.00 0.00 3.85
4235 4279 4.515432 GCTGTCGCTAAAATTTATCGTCC 58.485 43.478 8.52 2.88 0.00 4.79
4236 4280 4.270325 AGGCTGTCGCTAAAATTTATCGTC 59.730 41.667 8.52 4.54 36.09 4.20
4246 4290 0.460284 GCTAGCAGGCTGTCGCTAAA 60.460 55.000 17.16 0.00 40.09 1.85
4257 4301 3.777106 TTCATATCCCTTGCTAGCAGG 57.223 47.619 19.39 19.39 0.00 4.85
4279 4323 7.709613 GCTAAAATTTATCGTCCTGGAGTCTTA 59.290 37.037 0.00 0.00 0.00 2.10
4280 4324 6.539103 GCTAAAATTTATCGTCCTGGAGTCTT 59.461 38.462 0.00 0.00 0.00 3.01
4281 4325 6.049790 GCTAAAATTTATCGTCCTGGAGTCT 58.950 40.000 0.00 0.00 0.00 3.24
4282 4326 5.050972 CGCTAAAATTTATCGTCCTGGAGTC 60.051 44.000 0.00 0.00 0.00 3.36
4283 4327 4.809426 CGCTAAAATTTATCGTCCTGGAGT 59.191 41.667 0.00 0.00 0.00 3.85
4284 4328 5.047847 TCGCTAAAATTTATCGTCCTGGAG 58.952 41.667 8.52 0.00 0.00 3.86
4285 4329 4.807304 GTCGCTAAAATTTATCGTCCTGGA 59.193 41.667 8.52 0.00 0.00 3.86
4286 4330 4.569162 TGTCGCTAAAATTTATCGTCCTGG 59.431 41.667 8.52 0.00 0.00 4.45
4287 4331 5.712217 TGTCGCTAAAATTTATCGTCCTG 57.288 39.130 8.52 0.00 0.00 3.86
4288 4332 4.270325 GCTGTCGCTAAAATTTATCGTCCT 59.730 41.667 8.52 0.00 0.00 3.85
4289 4333 4.515432 GCTGTCGCTAAAATTTATCGTCC 58.485 43.478 8.52 2.88 0.00 4.79
4290 4334 4.270325 AGGCTGTCGCTAAAATTTATCGTC 59.730 41.667 8.52 4.54 36.09 4.20
4291 4335 4.034048 CAGGCTGTCGCTAAAATTTATCGT 59.966 41.667 6.28 0.00 36.09 3.73
4292 4336 4.518217 CAGGCTGTCGCTAAAATTTATCG 58.482 43.478 6.28 2.95 36.09 2.92
4293 4337 4.035675 AGCAGGCTGTCGCTAAAATTTATC 59.964 41.667 17.16 0.00 36.50 1.75
4294 4338 3.947834 AGCAGGCTGTCGCTAAAATTTAT 59.052 39.130 17.16 0.00 36.50 1.40
4295 4339 3.343617 AGCAGGCTGTCGCTAAAATTTA 58.656 40.909 17.16 0.00 36.50 1.40
4296 4340 2.162681 AGCAGGCTGTCGCTAAAATTT 58.837 42.857 17.16 0.00 36.50 1.82
4297 4341 1.826385 AGCAGGCTGTCGCTAAAATT 58.174 45.000 17.16 0.00 36.50 1.82
4298 4342 2.555199 CTAGCAGGCTGTCGCTAAAAT 58.445 47.619 17.16 0.00 40.09 1.82
4299 4343 2.007049 GCTAGCAGGCTGTCGCTAAAA 61.007 52.381 17.16 0.00 40.09 1.52
4300 4344 0.460284 GCTAGCAGGCTGTCGCTAAA 60.460 55.000 17.16 0.00 40.09 1.85
4301 4345 1.141881 GCTAGCAGGCTGTCGCTAA 59.858 57.895 17.16 0.00 40.09 3.09
4302 4346 1.604147 TTGCTAGCAGGCTGTCGCTA 61.604 55.000 18.45 10.45 39.70 4.26
4303 4347 2.849120 CTTGCTAGCAGGCTGTCGCT 62.849 60.000 18.45 9.77 42.34 4.93
4304 4348 2.434884 TTGCTAGCAGGCTGTCGC 60.435 61.111 18.45 15.74 0.00 5.19
4305 4349 1.812922 CCTTGCTAGCAGGCTGTCG 60.813 63.158 20.78 3.58 0.00 4.35
4306 4350 1.451028 CCCTTGCTAGCAGGCTGTC 60.451 63.158 20.78 8.57 0.00 3.51
4307 4351 1.277580 ATCCCTTGCTAGCAGGCTGT 61.278 55.000 20.78 5.87 0.00 4.40
4308 4352 0.761187 TATCCCTTGCTAGCAGGCTG 59.239 55.000 20.78 10.94 0.00 4.85
4309 4353 1.350351 CATATCCCTTGCTAGCAGGCT 59.650 52.381 20.78 12.31 0.00 4.58
4310 4354 1.349026 TCATATCCCTTGCTAGCAGGC 59.651 52.381 20.78 0.00 0.00 4.85
4311 4355 3.777106 TTCATATCCCTTGCTAGCAGG 57.223 47.619 19.39 19.39 0.00 4.85
4312 4356 7.118971 GTCTTATTTCATATCCCTTGCTAGCAG 59.881 40.741 18.45 11.87 0.00 4.24
4313 4357 6.936900 GTCTTATTTCATATCCCTTGCTAGCA 59.063 38.462 14.93 14.93 0.00 3.49
4314 4358 7.164803 AGTCTTATTTCATATCCCTTGCTAGC 58.835 38.462 8.10 8.10 0.00 3.42
4315 4359 9.646427 GTAGTCTTATTTCATATCCCTTGCTAG 57.354 37.037 0.00 0.00 0.00 3.42
4316 4360 8.304596 CGTAGTCTTATTTCATATCCCTTGCTA 58.695 37.037 0.00 0.00 0.00 3.49
4317 4361 7.155328 CGTAGTCTTATTTCATATCCCTTGCT 58.845 38.462 0.00 0.00 0.00 3.91
4318 4362 6.929606 ACGTAGTCTTATTTCATATCCCTTGC 59.070 38.462 0.00 0.00 29.74 4.01
4319 4363 7.926555 ACACGTAGTCTTATTTCATATCCCTTG 59.073 37.037 0.00 0.00 41.61 3.61
4320 4364 8.019656 ACACGTAGTCTTATTTCATATCCCTT 57.980 34.615 0.00 0.00 41.61 3.95
4321 4365 7.598759 ACACGTAGTCTTATTTCATATCCCT 57.401 36.000 0.00 0.00 41.61 4.20
4322 4366 8.355169 TGTACACGTAGTCTTATTTCATATCCC 58.645 37.037 0.00 0.00 41.61 3.85
4323 4367 9.178427 GTGTACACGTAGTCTTATTTCATATCC 57.822 37.037 10.84 0.00 41.61 2.59
4324 4368 9.726232 TGTGTACACGTAGTCTTATTTCATATC 57.274 33.333 20.61 0.00 41.61 1.63
4326 4370 9.511144 CATGTGTACACGTAGTCTTATTTCATA 57.489 33.333 20.05 0.00 41.61 2.15
4327 4371 8.033038 ACATGTGTACACGTAGTCTTATTTCAT 58.967 33.333 20.05 0.46 41.61 2.57
4328 4372 7.327518 CACATGTGTACACGTAGTCTTATTTCA 59.672 37.037 20.05 0.00 41.61 2.69
4329 4373 7.327761 ACACATGTGTACACGTAGTCTTATTTC 59.672 37.037 29.66 0.00 40.29 2.17
4330 4374 7.149973 ACACATGTGTACACGTAGTCTTATTT 58.850 34.615 29.66 0.00 40.29 1.40
4331 4375 6.684686 ACACATGTGTACACGTAGTCTTATT 58.315 36.000 29.66 0.00 40.29 1.40
4332 4376 6.072342 TGACACATGTGTACACGTAGTCTTAT 60.072 38.462 31.71 15.68 45.05 1.73
4333 4377 5.239087 TGACACATGTGTACACGTAGTCTTA 59.761 40.000 31.71 20.79 45.05 2.10
4334 4378 4.037089 TGACACATGTGTACACGTAGTCTT 59.963 41.667 31.71 18.64 45.05 3.01
4342 4387 3.393800 AGCTCTTGACACATGTGTACAC 58.606 45.455 30.63 19.36 45.05 2.90
4349 4394 3.661944 ACTTCAGAGCTCTTGACACATG 58.338 45.455 15.27 0.66 0.00 3.21
4352 4397 3.988819 AGAACTTCAGAGCTCTTGACAC 58.011 45.455 15.27 4.57 0.00 3.67
4379 4424 2.962421 CTGTAAAGGCCTGGACCAAAAA 59.038 45.455 5.69 0.00 0.00 1.94
4392 4437 3.743269 CGCCAACCCTATACCTGTAAAGG 60.743 52.174 0.00 0.00 0.00 3.11
4914 4959 0.326264 GAGGGCTGAAGAAGGAAGCA 59.674 55.000 0.00 0.00 38.73 3.91
5017 5066 2.509052 TGCATACGGTCTAGACATGC 57.491 50.000 27.55 27.55 41.81 4.06
5021 5070 3.782046 ACACAATGCATACGGTCTAGAC 58.218 45.455 14.87 14.87 0.00 2.59
5071 5122 6.380190 CTTCAGTTAGAAGTTACTACGCAGT 58.620 40.000 0.00 0.00 46.97 4.40
5098 5189 1.217244 CCAGGCAAGCTTTCCATGC 59.783 57.895 17.76 8.38 39.33 4.06
5122 5213 9.467258 CTTTTTGTTTCTTTGCAATAGATCAGA 57.533 29.630 0.00 0.00 0.00 3.27
5217 5310 3.508402 TCTCGCTGCCGATAACCATATAA 59.492 43.478 0.00 0.00 43.47 0.98
5218 5311 3.086282 TCTCGCTGCCGATAACCATATA 58.914 45.455 0.00 0.00 43.47 0.86
5219 5312 1.893137 TCTCGCTGCCGATAACCATAT 59.107 47.619 0.00 0.00 43.47 1.78
5260 5355 1.616374 TCAGATTAGTCGGTGTGTGCA 59.384 47.619 0.00 0.00 0.00 4.57
5294 5392 1.932757 AGGCCCTCCCTGCAAAGAT 60.933 57.895 0.00 0.00 44.28 2.40
5390 5490 6.811954 TGGTAGTTCTCCAAAATCAAAAACC 58.188 36.000 0.00 0.00 31.50 3.27
5397 5497 9.668497 AATTAGTACTGGTAGTTCTCCAAAATC 57.332 33.333 5.39 0.00 34.35 2.17
5415 5515 8.128016 ACACAAGAAAGCGCTATAATTAGTAC 57.872 34.615 12.05 0.00 0.00 2.73
5420 5520 9.931210 GTAATAACACAAGAAAGCGCTATAATT 57.069 29.630 12.05 0.00 0.00 1.40
5439 5539 4.274978 TGCTTTAGGGCTTGGGTAATAAC 58.725 43.478 0.00 0.00 0.00 1.89
5493 5638 9.229784 TCACTATTTTAGTAATCTAAACGCTCG 57.770 33.333 0.74 0.00 43.20 5.03
5524 5669 8.311836 CCCTCCGTAAAGAAATATAAGAGCATA 58.688 37.037 0.00 0.00 0.00 3.14
5526 5671 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
5527 5672 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
5538 5683 3.118519 GGCAAATACTCCCTCCGTAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
5539 5684 3.203716 GGCAAATACTCCCTCCGTAAAG 58.796 50.000 0.00 0.00 0.00 1.85
5636 5781 0.874390 TTTGTGCAGCGTCCTTGATC 59.126 50.000 0.00 0.00 0.00 2.92
5637 5782 0.593128 GTTTGTGCAGCGTCCTTGAT 59.407 50.000 0.00 0.00 0.00 2.57
5639 5784 0.381801 AAGTTTGTGCAGCGTCCTTG 59.618 50.000 0.00 0.00 0.00 3.61
5640 5785 0.381801 CAAGTTTGTGCAGCGTCCTT 59.618 50.000 0.00 0.00 0.00 3.36
5641 5786 0.748005 ACAAGTTTGTGCAGCGTCCT 60.748 50.000 0.00 0.00 40.49 3.85
5642 5787 0.941542 TACAAGTTTGTGCAGCGTCC 59.058 50.000 7.73 0.00 42.31 4.79
5643 5788 1.597663 AGTACAAGTTTGTGCAGCGTC 59.402 47.619 14.08 0.00 44.73 5.19
5674 5862 0.322816 GCAGGCCCAATCACTCAAGA 60.323 55.000 0.00 0.00 0.00 3.02
5738 5926 2.690778 CCCAAAAGGAGCTTCCGCG 61.691 63.158 0.00 0.00 42.75 6.46
5748 5936 1.908299 GGACTGGTGGCCCAAAAGG 60.908 63.158 0.00 0.00 41.27 3.11
5801 5990 5.163622 CCTTGGACAAAGCGAAATATGATGT 60.164 40.000 0.00 0.00 34.24 3.06
5876 6100 3.370366 CAGCCTCGTCTCAATGAAGAAAG 59.630 47.826 0.00 0.00 33.08 2.62
5879 6103 1.895798 ACAGCCTCGTCTCAATGAAGA 59.104 47.619 0.00 0.00 0.00 2.87
5880 6104 1.998315 CACAGCCTCGTCTCAATGAAG 59.002 52.381 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.